2015 Israel H5N1 Matches Egypt

niman · October 22, 2015

LOCUS       KT792918                1751 bp    cRNA    linear   VRL 20-OCT-2015
DEFINITION  Influenza A virus (A/duck/Gaza/552/2015(H5N1)) segment 4
            hemagglutinin (HA) gene, complete cds.
ACCESSION   KT792918
VERSION     KT792918.1  GI:938454702
KEYWORDS    .
SOURCE      Influenza A virus (A/duck/Gaza/552/2015(H5N1))
  ORGANISM  Influenza A virus (A/duck/Gaza/552/2015(H5N1))
            Viruses; ssRNA viruses; ssRNA negative-strand viruses;
            Orthomyxoviridae; Influenzavirus A.
REFERENCE   1  (bases 1 to 1751)
  AUTHORS   Shkoda,I., Lapin,K., Simanov,L., Alnakhal,R. and Lublin,A.
  TITLE     Highly pathogenic avian influenza A virus H5N1 isolated in Israel
            2015
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1751)
  AUTHORS   Shkoda,I., Lapin,K., Simanov,L., Alnakhal,R. and Lublin,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-SEP-2015) Division of Avian Diseases, Kimron
            Veterinari Institute, P.O.Box 12, Bet Dagan 50250, Israel
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: SeqMan DNAStar v. DNASTAR Lasergene 8
            Sequencing Technology :: IonTorrent
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers


     source          1..1751
                     /organism="Influenza A virus (A/duck/Gaza/552/2015(H5N1))"
                     /mol_type="viral cRNA"
                     /strain="A/duck/Gaza/552/2015"
                     /serotype="H5N1"
                     /host="duck"
                     /db_xref="taxon:1720091"
                     /segment="4"
                     /country="Israel"
                     /collection_date="12-Apr-2015"
                     /note="passage details: E1"


     gene            4..1707
                     /gene="HA"


     CDS             4..1707
                     /gene="HA"
                     /function="receptor binding and fusion protein"
                     /codon_start=1
                     /product="hemagglutinin"
                     /protein_id="ALJ33533.1"
                     /db_xref="GI:938454703"
                     /translation="MEKIVLLLAIASIVKSDQICIGYHANNSTEQVDTIMEKNVTVTH
                     AQDILEKTHNGKLCNLDGVKPLILRDCSVAGWLLGNPMCDEFLNVPEWSYIVEKINPA
                     NDLCYPGNFNDYEELKHLLSRINHFEKIQIIPKDSWSDHEASGVSSACPYQGRSSFFR
                     NVVWLTKKNDAYPTIKKSYNNTNQEDLLVLWGIHHPNDAAEQTRLYQNPTTYISVGTS
                     TLNQRLVPKIATRSKVNGQSGRMEFFWTILKSNDAINFESNGNFIAPENAYKIVKKGD
                     STIMKSELEYSNCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNRLVLATGLRN
                     SPQGEKRRKKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQRAIDG
                     VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE
                     RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHRCDNECMESVRNGTYDYPQYS
                     EEARLKREEISGVKLESIGTYQILSIYSTVASSLALAIMVAGLSLWMCSNGSLQCRIC
                     I"


     sig_peptide     4..51
                     /gene="HA"


     mat_peptide     52..1038
                     /gene="HA"
                     /product="HA1"


     mat_peptide     1039..1704
                     /gene="HA"
                     /product="HA2"
ORIGIN      
        1 aaaatggaga aaatagtgct tcttcttgca atagccagta ttgtcaaaag tgatcagatt
       61 tgcattggtt accatgcaaa caactcgaca gagcaggttg acacaataat ggaaaagaac
      121 gtcactgtta cacacgccca agacatactg gaaaagacac acaacgggaa actctgcaat
      181 ctagatggag tgaagcctct cattttaaga gattgtagtg tagctggatg gctcctcggg
      241 aacccaatgt gcgatgaatt cctcaatgtg ccggaatggt cttacatagt ggagaaaatc
      301 aatccagcca atgacctctg ttatccaggg aatttcaacg actatgaaga actgaaacac
      361 ctattgagca gaataaacca ttttgagaaa attcagatca ttcccaaaga ttcttggtca
      421 gatcatgaag cctcaggagt gagctcagca tgcccatacc aaggaagatc ctcctttttt
      481 agaaatgttg tatggcttac caaaaagaac gatgcatacc caacaataaa gaaaagttac
      541 aataatacta accaagaaga tcttttggta ctatggggga ttcaccatcc aaatgatgct
      601 gcagagcaga caaggcttta tcaaaaccca actacctata tctccgttgg gacatcaaca
      661 ctaaaccaga gattggtacc caaaatagct actagatcta aggtaaacgg gcaaagtgga
      721 aggatggagt ttttttggac aattttaaaa tcgaatgatg caataaactt tgagagcaat
      781 ggaaacttca ttgctccaga aaatgcatac aaaattgtca agaaaggaga ttcaacaatt
      841 atgaaaagtg agttggaata tagtaactgc aacaccaagt gtcagactcc aataggggcg
      901 ataaactcca gtatgccatt ccacaacatc caccctctca ccatcgggga atgccccaaa
      961 tatgtgaaat caaacagatt agtccttgct actgggctca ggaatagccc tcaaggagag
     1021 aaaagaagaa aaaagagagg actattcgga gccatagcag gctttataga gggaggatgg
     1081 cagggaatgg tagatggttg gtatgggtac caccatagca acgagcaggg gagtgggtac
     1141 gctgcagaca aagaatccac tcaaagggct atagatggag tcaccaataa ggtcaattcg
     1201 atcattgaca aaatgaacac ccagtttgag gctgttggaa gggaatttaa taacttagaa
     1261 aggagaatag aaaatttgaa caagaagatg gaagacggat tcctagatgt ctggacctat
     1321 aatgctgaac ttctggttct catggaaaat gagagaactc tagactttca tgactcaaat
     1381 gtcaagaatc tttatgacaa ggtccgacta cagcttaggg ataatgcaaa ggagcttggt
     1441 aacggctgtt tcgagttcta tcacagatgt gataatgaat gtatggaaag tgtaagaaac
     1501 ggaacgtatg actatcctca atattcagaa gaagcaagat taaaaagaga ggaaataagt
     1561 ggagtaaaat tggagtcaat aggaacttac caaatactgt caatttattc aacagtggcg
     1621 agctccctag cactggcaat catggtggct ggtctatctt tatggatgtg ctccaatgga
     1681 tcgctacaat gcagaatttg catttaaatt tgtgagttca aattgtagtt aaaaacaccc
     1741 ttgtttctac t

niman · October 22, 2015

Segment-ID	Name	Score	E-Value	Identity
EPI579781	A/duck/Egypt/CLEVB-25_N00239/2015 (A/H5N1) segment 4 (HA)	3125.7	0.000000e+00	1700/1704 (99%)
EPI579780	A/duck/Egypt/CLEVB-24_N00238/2015 (A/H5N1) segment 4 (HA)	3125.7	0.000000e+00	1700/1704 (99%)
EPI584778	A/chicken/Egypt/A10351A/2014 (A/H5N1) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI573268	A/Turkey/Egypt/AR238-SD177NLQP/2014 (A/H5N1) segment 4 (HA)	3086.9	0.000000e+00	1691/1701 (99%)
EPI579006	A/chicken/Egypt/CLEVB-1_N00215/2014 (A/H5N1) segment 4 (HA)	3083.2	0.000000e+00	1692/1704 (99%)
EPI573252	A/Turkey/Egypt/AR235-S240NLQP/2014 (A/H5N1) segment 4 (HA)	3081.3	0.000000e+00	1690/1701 (99%)
EPI573244	A/chicken/Egypt/AR231-CA113NLQP/2014 (A/H5N1) segment 4 (HA)	3081.3	0.000000e+00	1690/1701 (99%)
EPI579784	A/chicken/Egypt/CLEVB-18_N00232/2015 (A/H5N1) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI579783	A/chicken/Egypt/CLEVB-21_N00235/2015 (A/H5N1) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI579782	A/chicken/Egypt/CLEVB-20_N00234/2015 (A/H5N1) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI579520	A/chicken/Egypt/CLEVB-17_N00231/2015 (A/H5N1) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI579325	A/chicken/Egypt/CLEVB-16_N00230/2014 (A/H5N1) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI579324	A/chicken/Egypt/CLEVB-19_N00233/2015 (A/H5N1) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI574132	A/Egypt/MOH-NRC-7305/2014 (A/H5N1) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI557138	A/Quail/Egypt/BSU5514-AR2219/2014 (A/H5N1) segment 4 (HA)	3075.8	0.000000e+00	1689/1701 (99%)
EPI573248	A/chicken/Egypt/AR233-S283NLQP/2014 (A/H5N1) segment 4 (HA)	3072.1	0.000000e+00	1687/1699 (99%)
EPI573250	A/chicken/Egypt/AR234-FAOF8NLQP/2014 (A/H5N1) segment 4 (HA)	3070.3	0.000000e+00	1688/1701 (99%)
EPI642537	A/Egypt/682/2015 (A/H5N1) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI573260	A/Duck/Egypt/AR236-A3NLQP/2015 (A/H5N1) segment 4 (HA)	3064.7	0.000000e+00	1687/1701 (99%)
EPI573246	A/Duck/Egypt/AR232-A13NLQP/2014 (A/H5N1) segment 4 (HA)	3053.6	0.000000e+00	1685/1701 (99%)
EPI584783	A/Egypt/MOH-NRC-8434/2014 (A/H5N1) segment 4 (HA)	3048.1	0.000000e+00	1686/1704 (98%)
EPI574125	A/Egypt/MOH-NRC-7271/2014 (A/H5N1) segment 4 (HA)	3048.1	0.000000e+00	1686/1704 (98%)
EPI550493	A/duck/Egypt/14VIR784-4-133AD/2013 (A/H5N1) segment 4 (HA)	3037.0	0.000000e+00	1684/1704 (98%)
EPI573315	A/duck/Egypt/BS-146RS-f6/2014 (A/H5N1) segment 4 (HA)	3029.6	0.000000e+00	1662/1673 (99%)
EPI573321	A/chicken/Egypt/153AF/2015 (A/H5N1) segment 4 (HA)	3027.8	0.000000e+00	1662/1674 (99%)
EPI573322	A/chicken/Egypt/152RS/2015 (A/H5N1) segment 4 (HA)	3022.2	0.000000e+00	1661/1674 (99%)
EPI573330	A/chicken/Egypt/1476CA/2014 (A/H5N1) segment 4 (HA)	3020.4	0.000000e+00	1661/1674 (99%)
EPI557194	A/Duck/Egypt/NLQP27SG-AR750/2013 (A/H5N1) segment 4 (HA)	3020.4	0.000000e+00	1679/1701 (98%)
EPI573328	A/chicken/Egypt/14168CA/2014 (A/H5N1) segment 4 (HA)	3016.7	0.000000e+00	1653/1663 (99%)
EPI573318	A/chicken/Egypt/1478CAL/2014 (A/H5N1) segment 4 (HA)	3016.7	0.000000e+00	1653/1663 (99%)
EPI557178	A/chicken/Egypt/NLQP33SD-AR748/2013 (A/H5N1) segment 4 (HA)	3014.9	0.000000e+00	1679/1702 (98%)
EPI500079	A/goose/Egypt/M7221D/2013 (A/H5N1) segment 4 (HA)	3009.3	0.000000e+00	1679/1704 (98%)
EPI500078	A/chicken/Egypt/M7217A/2013 (A/H5N1) segment 4 (HA)	3009.3	0.000000e+00	1679/1704 (98%)
EPI487342	A/chicken/Egypt/M7217B/2013 (A/H5N1) segment 4 (HA)	3009.3	0.000000e+00	1679/1704 (98%)
EPI500109	A/chicken/Egypt/Q5283C/2012 (A/H5N1) segment 4 (HA)	3005.6	0.000000e+00	1678/1704 (98%)
EPI573319	A/chicken/Egypt/152/2015 (A/H5N1) segment 4 (HA)	3003.8	0.000000e+00	1656/1671 (99%)
EPI504991	A/chicken/Egypt/BSU-BS-R24/2012 (A/H5N1) segment 4 (HA)	3003.8	0.000000e+00	1678/1704 (98%)
EPI504990	A/chicken/Egypt/BSU-BS-F27/2012 (A/H5N1) segment 4 (HA)	3003.8	0.000000e+00	1678/1704 (98%)
EPI348153	A/chicken/Egypt/11VIR4453-266/2010 (A/H5N1) segment 4 (HA)	3000.1	0.000000e+00	1677/1704 (98%)
EPI597822	A/duck/Egypt/1471SG/2014 (A/H5N1) segment 4 (HA)	2998.2	0.000000e+00	1678/1705 (98%)
EPI557218	A/chicken/Egypt/NLQP139V-AR753/2013 (A/H5N1) segment 4 (HA)	2998.2	0.000000e+00	1675/1701 (98%)
EPI340133	A/goose/Egypt/1117SF/2011 (A/H5N1) segment 4 (HA)	2998.2	0.000000e+00	1677/1704 (98%)
EPI603916	A/duck/Egypt/154FAOFL/2015 (A/H5N1) segment 4 (HA)	2994.5	0.000000e+00	1634/1640 (99%)
EPI597815	A/turkey/Egypt/1438S/2014 (A/H5N1) segment 4 (HA)	2992.7	0.000000e+00	1676/1704 (98%)
EPI500082	A/duck/Egypt/M7218B/2013 (A/H5N1) segment 4 (HA)	2992.7	0.000000e+00	1677/1705 (98%)
EPI373013	A/Egypt/N00166/2011 (A/H5N1) segment 4 (HA)	2992.7	0.000000e+00	1677/1705 (98%)
EPI340135	A/chicken/Egypt/1113/2011 (A/H5N1) segment 4 (HA)	2992.7	0.000000e+00	1676/1704 (98%)
EPI338733	A/duck/Egypt/M2583B/2010 (A/H5N1) segment 4 (HA)	2992.7	0.000000e+00	1677/1705 (98%)
EPI338732	A/duck/Egypt/M2583C/2010 (A/H5N1) segment 4 (HA)	2992.7	0.000000e+00	1677/1705 (98%)
EPI338616	A/duck/Egypt/M2583D/2010 (A/H5N1) segment 4 (HA)	2992.7	0.000000e+00	1677/1705 (98%)
EPI608783	A/turkey/Israel/188/2015 (A/H5N1) segment 4 (HA)	2987.2	0.000000e+00	1633/1641 (99%)
EPI608778	A/chicken/Israel/88/2015 (A/H5N1) segment 4 (HA)	2987.2	0.000000e+00	1633/1641 (99%)
EPI608777	A/turkey/Israel/107/2015 (A/H5N1) segment 4 (HA)	2987.2	0.000000e+00	1633/1641 (99%)
EPI600754	A/chicken/Egypt/N05832-CLEVB754/2011 (A/H5N1) segment 4 (HA)	2987.2	0.000000e+00	1673/1701 (98%)
EPI597812	A/chicken/Egypt/1422S/2014 (A/H5N1) segment 4 (HA)	2987.2	0.000000e+00	1675/1704 (98%)
EPI372907	A/Egypt/N7562/2011 (A/H5N1) segment 4 (HA)	2987.2	0.000000e+00	1676/1705 (98%)
EPI348152	A/chicken/Egypt/11VIR4453-268/2010 (A/H5N1) segment 4 (HA)	2987.2	0.000000e+00	1675/1704 (98%)
EPI340138	A/duck/Egypt/1125S/2011 (A/H5N1) segment 4 (HA)	2987.2	0.000000e+00	1675/1704 (98%)
EPI340101	A/chicken/Egypt/1112AF/2011 (A/H5N1) segment 4 (HA)	2987.2	0.000000e+00	1675/1704 (98%)
EPI340087	A/duck/Egypt/11193SF/2011 (A/H5N1) segment 4 (HA)	2987.2	0.000000e+00	1675/1704 (98%)
EPI340085	A/chicken/Egypt/1118AF/2011 (A/H5N1) segment 4 (HA)	2987.2	0.000000e+00	1675/1704 (98%)
EPI338615	A/duck/Egypt/Q2645C/2010 (A/H5N1) segment 4 (HA)	2987.2	0.000000e+00	1675/1704 (98%)
EPI608786	A/turkey/Israel/209/2015 (A/H5N1) segment 4 (HA)	2981.6	0.000000e+00	1632/1641 (99%)
EPI608780	A/turkey/Jenin/39/2015 (A/H5N1) segment 4 (HA)	2981.6	0.000000e+00	1632/1641 (99%)
EPI597825	A/turkey/Egypt/1414CAL/2014 (A/H5N1) segment 4 (HA)	2981.6	0.000000e+00	1674/1704 (98%)
EPI597823	A/turkey/Egypt/14125S/2014 (A/H5N1) segment 4 (HA)	2981.6	0.000000e+00	1674/1704 (98%)
EPI597818	A/chicken/Egypt/1461S/2014 (A/H5N1) segment 4 (HA)	2981.6	0.000000e+00	1674/1704 (98%)
EPI597816	A/duck/Egypt/1435CAS/2014 (A/H5N1) segment 4 (HA)	2981.6	0.000000e+00	1675/1705 (98%)
EPI557136	A/Turkey/Egypt/BSU5114-AR2218/2014 (A/H5N1) segment 4 (HA)	2981.6	0.000000e+00	1672/1701 (98%)
EPI340151	A/chicken/Egypt/10513S/2010 (A/H5N1) segment 4 (HA)	2981.6	0.000000e+00	1674/1704 (98%)
EPI340104	A/chicken/Egypt/117AD/2011 (A/H5N1) segment 4 (HA)	2981.6	0.000000e+00	1674/1704 (98%)
EPI550507	A/duck/Egypt/14VIR784-8-1339S/2013 (A/H5N1) segment 4 (HA)	2979.8	0.000000e+00	1673/1703 (98%)
EPI348158	A/chicken/Egypt/11VIR4453-109/VRLCU/2011 (A/H5N1) segment 4 (HA)	2979.8	0.000000e+00	1673/1703 (98%)
EPI608781	A/turkey/Israel/274/2015 (A/H5N1) segment 4 (HA)	2977.9	0.000000e+00	1630/1639 (99%)
EPI373020	A/Egypt/N08932/2010 (A/H5N1) segment 4 (HA)	2977.9	0.000000e+00	1673/1704 (98%)
EPI348160	A/chicken/Egypt/11VIR4453-267/2010 (A/H5N1) segment 4 (HA)	2977.9	0.000000e+00	1672/1702 (98%)
EPI348157	A/chicken/Egypt/11VIR4453-15/VRLCU/2010 (A/H5N1) segment 4 (HA)	2977.9	0.000000e+00	1672/1702 (98%)
EPI348156	A/chicken/Egypt11VIR4453-269/2010 (A/H5N1) segment 4 (HA)	2977.9	0.000000e+00	1672/1703 (98%)
EPI608784	A/chicken/Israel/333/2015 (A/H5N1) segment 4 (HA)	2976.1	0.000000e+00	1631/1641 (99%)
EPI608782	A/turkey/Israel/174/2015 (A/H5N1) segment 4 (HA)	2976.1	0.000000e+00	1631/1641 (99%)
EPI608779	A/chicken/Qalqilya/53/2015 (A/H5N1) segment 4 (HA)	2976.1	0.000000e+00	1631/1641 (99%)
EPI597817	A/chicken/Egypt/1460S/2014 (A/H5N1) segment 4 (HA)	2976.1	0.000000e+00	1673/1704 (98%)
EPI597814	A/chicken/Egypt/1429S/2014 (A/H5N1) segment 4 (HA)	2976.1	0.000000e+00	1673/1704 (98%)
EPI373016	A/Egypt/N10954/2010 (A/H5N1) segment 4 (HA)	2976.1	0.000000e+00	1673/1704 (98%)
EPI340106	A/duck/Egypt/1110AF/2011 (A/H5N1) segment 4 (HA)	2976.1	0.000000e+00	1673/1704 (98%)
EPI340103	A/chicken/Egypt/111766V/2011 (A/H5N1) segment 4 (HA)	2976.1	0.000000e+00	1673/1704 (98%)
EPI340092	A/chicken/Egypt/1155/2011 (A/H5N1) segment 4 (HA)	2976.1	0.000000e+00	1673/1704 (98%)
EPI338618	A/duck/Egypt/M2583A/2010 (A/H5N1) segment 4 (HA)	2976.1	0.000000e+00	1674/1705 (98%)
EPI338610	A/duck/Egypt/M3075B/2011 (A/H5N1) segment 4 (HA)	2976.1	0.000000e+00	1674/1705 (98%)
EPI608787	A/spur-winged lapwing/Israel/101/2015 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1630/1641 (99%)
EPI597813	A/chicken/Egypt/1412SD/2014 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1672/1704 (98%)
EPI550500	A/duck/Egypt/14VIR784-6-1328S/2013 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1672/1704 (98%)
EPI537618	A/Egypt/N01754/2014 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1672/1704 (98%)
EPI373012	A/Egypt/N04286/2011 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1672/1704 (98%)
EPI373011	A/Egypt/N04288/2011 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1672/1704 (98%)
EPI372963	A/Egypt/N10621/2011 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1672/1704 (98%)
EPI372875	A/Egypt/N0677/2011 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1673/1705 (98%)
EPI340165	A/duck/Egypt/10228SF/2010 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1672/1704 (98%)
EPI340154	A/duck/Egypt/10118/2010 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1673/1705 (98%)
EPI340141	A/chicken/Egypt/112SG/2011 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1672/1704 (98%)
EPI340136	A/chicken/Egypt/1112/2011 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1672/1704 (98%)
EPI340131	A/chicken/Egypt/1117/2011 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1672/1704 (98%)
EPI340122	A/chicken/Egypt/1128/2011 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1672/1704 (98%)
EPI340107	A/chicken/Egypt/11184S/2011 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1673/1705 (98%)
EPI340102	A/chicken/Egypt/1134SD/2011 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1672/1704 (98%)
EPI340091	A/duck/Egypt/11117SS/2011 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1672/1704 (98%)
EPI373017	A/Egypt/N05860/2011 (A/H5N1) segment 4 (HA)	2966.8	0.000000e+00	1671/1704 (98%)
EPI348151	A/chicken/Egypt/11VIR4453-270/2010 (A/H5N1) segment 4 (HA)	2966.8	0.000000e+00	1667/1698 (98%)
EPI340118	A/chicken/Egypt/1158SF/2011 (A/H5N1) segment 4 (HA)	2966.8	0.000000e+00	1674/1707 (98%)
EPI597828	A/goose/Egypt/1439FAOS/2014 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1671/1704 (98%)
EPI597811	A/duck/Egypt/141AI/2014 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1672/1705 (98%)
EPI537617	A/Egypt/N01753/2014 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1670/1703 (98%)
EPI397334	A/duck/Egypt/1111sg/2011 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1671/1704 (98%)
EPI393783	A/Egypt/N00951/2012 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1671/1704 (98%)
EPI373015	A/Egypt/N04284/2011 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1671/1704 (98%)
EPI372851	A/Egypt/N0544/2011 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1671/1704 (98%)
EPI340126	A/chicken/Egypt/112AF/2011 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1671/1704 (98%)
EPI340124	A/chicken/Egypt/114AF/2011 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1671/1704 (98%)
EPI340123	A/chicken/Egypt/115AF/2011 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1671/1704 (98%)
EPI340121	A/chicken/Egypt/1146SF/2011 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1671/1704 (98%)
EPI340119	A/duck/Egypt/1148SF/2011 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1671/1704 (98%)
EPI340100	A/duck/Egypt/11211S/2011 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1671/1704 (98%)
EPI340094	A/duck/Egypt/1116AF/2011 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1671/1704 (98%)
EPI338614	A/chicken/Egypt/M2773A/2011 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1671/1704 (98%)
EPI338609	A/chicken/Egypt/S3280B/2011 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1672/1705 (98%)
EPI336862	A/turkey/Jenin/341/2011 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1671/1704 (98%)
EPI628911	A/chicken/F611/Egypt/2015(H5N1) (A/H5N1) segment 4 (HA)	2963.1	0.000000e+00	1629/1642 (99%)
EPI603902	A/chicken/Egypt/1439CAL/2014 (A/H5N1) segment 4 (HA)	2963.1	0.000000e+00	1664/1694 (98%)
EPI538767	A/chicken/Egypt/13VIR-2962-109/2013 (A/H5N1) segment 4 (HA)	2963.1	0.000000e+00	1662/1691 (98%)
EPI372923	A/Egypt/N7724/2011 (A/H5N1) segment 4 (HA)	2961.3	0.000000e+00	1670/1704 (98%)
EPI369189	A/chicken/Egypt/1188/2011 (A/H5N1) segment 4 (HA)	2961.3	0.000000e+00	1671/1705 (98%)
EPI597819	A/duck/Egypt/1468S/2014 (A/H5N1) segment 4 (HA)	2959.5	0.000000e+00	1671/1705 (98%)
EPI557202	A/chicken/Egypt/NLQP20SL-AR751/2013 (A/H5N1) segment 4 (HA)	2959.5	0.000000e+00	1668/1701 (98%)
EPI493430	A/chicken/Egypt/S3280E/2011 (A/H5N1) segment 4 (HA)	2959.5	0.000000e+00	1671/1705 (98%)
EPI393786	A/Egypt/N02137/2012 (A/H5N1) segment 4 (HA)	2959.5	0.000000e+00	1670/1704 (98%)
EPI373019	A/Egypt/N04285/2011 (A/H5N1) segment 4 (HA)	2959.5	0.000000e+00	1670/1704 (98%)
EPI373018	A/Egypt/N00002/2011 (A/H5N1) segment 4 (HA)	2959.5	0.000000e+00	1670/1704 (98%)
EPI372859	A/Egypt/N6322/2011 (A/H5N1) segment 4 (HA)	2959.5	0.000000e+00	1670/1704 (98%)
EPI369181	A/chicken/Egypt/1176/2011 (A/H5N1) segment 4 (HA)	2959.5	0.000000e+00	1670/1704 (98%)
EPI369180	A/duck/Egypt/1120SMF/2011 (A/H5N1) segment 4 (HA)	2959.5	0.000000e+00	1670/1704 (98%)
EPI340173	A/chicken/Egypt/1021AD/2010 (A/H5N1) segment 4 (HA)	2959.5	0.000000e+00	1670/1704 (98%)
EPI340160	A/chicken/Egypt/10250SF/2010 (A/H5N1) segment 4 (HA)	2959.5	0.000000e+00	1670/1704 (98%)
EPI340127	A/chicken/Egypt/111AF/2011 (A/H5N1) segment 4 (HA)	2959.5	0.000000e+00	1670/1704 (98%)
EPI340109	A/chicken/Egypt/111640V/2011 (A/H5N1) segment 4 (HA)	2959.5	0.000000e+00	1670/1704 (98%)
EPI340082	A/quail/Egypt/1171SG/2011 (A/H5N1) segment 4 (HA)	2959.5	0.000000e+00	1670/1704 (98%)
EPI338731	A/goose/Egypt/M2794E/2011 (A/H5N1) segment 4 (HA)	2959.5	0.000000e+00	1670/1704 (98%)
EPI338613	A/goose/Egypt/M2788A/2011 (A/H5N1) segment 4 (HA)	2959.5	0.000000e+00	1670/1704 (98%)
EPI338612	A/goose/Egypt/M2788E/2011 (A/H5N1) segment 4 (HA)	2959.5	0.000000e+00	1670/1704 (98%)
EPI338611	A/goose/Egypt/M2794A/2011 (A/H5N1) segment 4 (HA)	2959.5	0.000000e+00	1670/1704 (98%)
EPI603901	A/chicken/Egypt/1436CAL/2014 (A/H5N1) segment 4 (HA)	2957.6	0.000000e+00	1663/1694 (98%)
EPI460395	A/chicken/Egypt/1094/2010 (A/H5N1) segment 4 (HA)	2957.6	0.000000e+00	1663/1694 (98%)
EPI348155	A/chicken/Egypt/11VIR4453-68/VRLCU/2011 (A/H5N1) segment 4 (HA)	2957.6	0.000000e+00	1661/1691 (98%)
EPI373022	A/Egypt/N09407/2010 (A/H5N1) segment 4 (HA)	2953.9	0.000000e+00	1669/1704 (97%)
EPI372867	A/Egypt/N6658/2011 (A/H5N1) segment 4 (HA)	2953.9	0.000000e+00	1669/1704 (97%)
EPI340152	A/duck/Egypt/10290SF/2010 (A/H5N1) segment 4 (HA)	2953.9	0.000000e+00	1669/1704 (97%)
EPI340149	A/duck/Egypt/10336SF/2010 (A/H5N1) segment 4 (HA)	2953.9	0.000000e+00	1669/1704 (97%)
EPI340147	A/chicken/Egypt/10132/2010 (A/H5N1) segment 4 (HA)	2953.9	0.000000e+00	1669/1704 (97%)
EPI340134	A/duck/Egypt/1113SD/2011 (A/H5N1) segment 4 (HA)	2953.9	0.000000e+00	1670/1705 (97%)
EPI340129	A/chicken/Egypt/1174S/2011 (A/H5N1) segment 4 (HA)	2953.9	0.000000e+00	1669/1704 (97%)
EPI340116	A/chicken/Egypt/116AF/2011 (A/H5N1) segment 4 (HA)	2953.9	0.000000e+00	1670/1705 (97%)
EPI340115	A/duck/Egypt/1174SF/2011 (A/H5N1) segment 4 (HA)	2953.9	0.000000e+00	1669/1704 (97%)
EPI340099	A/duck/Egypt/1153/2011 (A/H5N1) segment 4 (HA)	2953.9	0.000000e+00	1669/1704 (97%)
EPI340096	A/chicken/Egypt/111945V/2011 (A/H5N1) segment 4 (HA)	2953.9	0.000000e+00	1669/1704 (97%)
EPI338608	A/chicken/Egypt/S3280D/2011 (A/H5N1) segment 4 (HA)	2953.9	0.000000e+00	1670/1705 (97%)
EPI603908	A/chicken/Egypt/1456CAL/2014 (A/H5N1) segment 4 (HA)	2952.1	0.000000e+00	1662/1694 (98%)
EPI348154	A/chicken/Egypt/11VIR4453-264/2010 (A/H5N1) segment 4 (HA)	2952.1	0.000000e+00	1668/1704 (97%)
EPI574389	A/Turkey/Egypt/14240FAOS/2014 (A/H5N1) segment 4 (HA)	2950.2	0.000000e+00	1629/1644 (99%)
EPI372915	A/Egypt/N7592/2011 (A/H5N1) segment 4 (HA)	2950.2	0.000000e+00	1668/1704 (97%)
EPI597827	A/chicken/Egypt/147CA/2014 (A/H5N1) segment 4 (HA)	2948.4	0.000000e+00	1670/1706 (97%)
EPI597821	A/chicken/Egypt/1411CAL/2014 (A/H5N1) segment 4 (HA)	2948.4	0.000000e+00	1669/1705 (97%)
EPI373014	A/Egypt/N04287/2011 (A/H5N1) segment 4 (HA)	2948.4	0.000000e+00	1670/1706 (97%)
EPI372883	A/Egypt/N6774/2011 (A/H5N1) segment 4 (HA)	2948.4	0.000000e+00	1668/1704 (97%)
EPI372715	A/Egypt/9538-NAMRU3/2009 (A/H5N1) segment 4 (HA)	2948.4	0.000000e+00	1668/1704 (97%)
EPI369193	A/chicken/Egypt/121/2012 (A/H5N1) segment 4 (HA)	2948.4	0.000000e+00	1668/1704 (97%)
EPI369190	A/duck/Egypt/11762s/2011 (A/H5N1) segment 4 (HA)	2948.4	0.000000e+00	1668/1704 (97%)
EPI340097	A/duck/Egypt/11221S/2011 (A/H5N1) segment 4 (HA)	2948.4	0.000000e+00	1668/1704 (97%)
EPI255398	A/Egypt/N09174/2009 (A/H5N1) segment 4 (HA)	2948.4	0.000000e+00	1668/1704 (97%)
EPI603900	A/turkey/Egypt/1419FAOS/2014 (A/H5N1) segment 4 (HA)	2946.5	0.000000e+00	1661/1694 (98%)
EPI348148	A/chicken/Egypt/11VIR4453-59/VRLCU/2011 (A/H5N1) segment 4 (HA)	2946.5	0.000000e+00	1657/1688 (98%)
EPI603915	A/duck/Egypt/153AL/2015 (A/H5N1) segment 4 (HA)	2944.7	0.000000e+00	1616/1627 (99%)
EPI369179	A/chicken/Egypt/11506SF/2011 (A/H5N1) segment 4 (HA)	2944.7	0.000000e+00	1667/1704 (97%)
EPI608785	A/chicken/Israel/156/2015 (A/H5N1) segment 4 (HA)	2942.8	0.000000e+00	1625/1641 (99%)
EPI493497	A/chicken/Egypt/S2938D/2011 (A/H5N1) segment 4 (HA)	2942.8	0.000000e+00	1667/1704 (97%)
EPI372931	A/Egypt/N09966/2011 (A/H5N1) segment 4 (HA)	2942.8	0.000000e+00	1667/1704 (97%)
EPI372891	A/Egypt/N6828/2011 (A/H5N1) segment 4 (HA)	2942.8	0.000000e+00	1668/1705 (97%)
EPI369185	A/chicken/Egypt/11667s/2011 (A/H5N1) segment 4 (HA)	2942.8	0.000000e+00	1667/1704 (97%)
EPI340146	A/chicken/Egypt/10347SF/2010 (A/H5N1) segment 4 (HA)	2942.8	0.000000e+00	1667/1704 (97%)
EPI340110	A/goose/Egypt/11162S/2011 (A/H5N1) segment 4 (HA)	2942.8	0.000000e+00	1667/1704 (97%)
EPI338730	A/chicken/Egypt/S2938A/2011 (A/H5N1) segment 4 (HA)	2942.8	0.000000e+00	1667/1704 (97%)
EPI338729	A/chicken/Egypt/S3093A/2011 (A/H5N1) segment 4 (HA)	2942.8	0.000000e+00	1667/1704 (97%)
EPI255371	A/Egypt/N02127/2010 (A/H5N1) segment 4 (HA)	2942.8	0.000000e+00	1667/1704 (97%)
EPI348150	A/chicken/Egypt/11VIR4453-138/VRLCU/2011 (A/H5N1) segment 4 (HA)	2941.0	0.000000e+00	1664/1699 (97%)
EPI255367	A/Egypt/N01982/2010 (A/H5N1) segment 4 (HA)	2939.1	0.000000e+00	1666/1704 (97%)
EPI557210	A/chicken/Egypt/NLQP639V-AR752/2013 (A/H5N1) segment 4 (HA)	2937.3	0.000000e+00	1665/1702 (97%)
EPI500117	A/duck/Egypt/S6419C/2012 (A/H5N1) segment 4 (HA)	2937.3	0.000000e+00	1666/1704 (97%)
EPI500080	A/turkey/Egypt/S6405E/2012 (A/H5N1) segment 4 (HA)	2937.3	0.000000e+00	1666/1704 (97%)
EPI493152	A/duck/Egypt/Q4596B/2012 (A/H5N1) segment 4 (HA)	2937.3	0.000000e+00	1666/1704 (97%)
EPI398575	A/duck/Egypt/Q4596C/2012 (A/H5N1) segment 4 (HA)	2937.3	0.000000e+00	1666/1704 (97%)
EPI373021	A/Egypt/N16789/2010 (A/H5N1) segment 4 (HA)	2937.3	0.000000e+00	1667/1705 (97%)
EPI372955	A/Egypt/N14976/2011 (A/H5N1) segment 4 (HA)	2937.3	0.000000e+00	1666/1704 (97%)
EPI372947	A/Egypt/N11470/2011 (A/H5N1) segment 4 (HA)	2937.3	0.000000e+00	1666/1704 (97%)
EPI340144	A/chicken/Egypt/10413SF/2010 (A/H5N1) segment 4 (HA)	2937.3	0.000000e+00	1667/1705 (97%)
EPI340098	A/duck/Egypt/11106SF/2011 (A/H5N1) segment 4 (HA)	2937.3	0.000000e+00	1667/1705 (97%)
EPI340093	A/chicken/Egypt/11124SF/2011 (A/H5N1) segment 4 (HA)	2937.3	0.000000e+00	1667/1705 (97%)
EPI340089	A/duck/Egypt/11312S/2011 (A/H5N1) segment 4 (HA)	2937.3	0.000000e+00	1667/1705 (97%)
EPI338187	A/harrier/Israel/531/2011 (A/H5N1) segment 4 (HA)	2937.3	0.000000e+00	1666/1704 (97%)
EPI597824	A/chicken/Egypt/14126S/2014 (A/H5N1) segment 4 (HA)	2933.6	0.000000e+00	1670/1709 (97%)
EPI573314	A/chicken/Egypt/14148CA/2014 (A/H5N1) segment 4 (HA)	2933.6	0.000000e+00	1616/1630 (99%)
EPI348162	A/chicken/Egypt/11VIR4453-7/VRLCU/2010 (A/H5N1) segment 4 (HA)	2933.6	0.000000e+00	1662/1699 (97%)
EPI597826	A/chicken/Egypt/141VI/2014 (A/H5N1) segment 4 (HA)	2931.8	0.000000e+00	1667/1706 (97%)
EPI538807	A/chicken/Egypt/13VIR-2962-200/2013 (A/H5N1) segment 4 (HA)	2931.8	0.000000e+00	1637/1662 (98%)
EPI538791	A/chicken/Egypt/13VIR-2962-198/2013 (A/H5N1) segment 4 (HA)	2931.8	0.000000e+00	1637/1662 (98%)
EPI500085	A/duck/Egypt/S6419E/2012 (A/H5N1) segment 4 (HA)	2931.8	0.000000e+00	1665/1704 (97%)
EPI372939	A/Egypt/N11126/2011 (A/H5N1) segment 4 (HA)	2931.8	0.000000e+00	1665/1704 (97%)
EPI369198	A/chicken/Egypt/12186F-12/2012 (A/H5N1) segment 4 (HA)	2931.8	0.000000e+00	1665/1704 (97%)
EPI369186	A/duck/Egypt/11685s/2011 (A/H5N1) segment 4 (HA)	2931.8	0.000000e+00	1666/1705 (97%)
EPI369183	A/chicken/Egypt/11672s/2011 (A/H5N1) segment 4 (HA)	2931.8	0.000000e+00	1665/1704 (97%)
EPI348159	A/chicken/Egypt/11VIR4453-137/VRLCU/2011 (A/H5N1) segment 4 (HA)	2931.8	0.000000e+00	1655/1689 (97%)
EPI340150	A/duck/Egypt/10331SF/2010 (A/H5N1) segment 4 (HA)	2931.8	0.000000e+00	1665/1704 (97%)
EPI340081	A/chicken/Egypt/11529S/2011 (A/H5N1) segment 4 (HA)	2931.8	0.000000e+00	1665/1704 (97%)
EPI287352	A/chicken/Egypt/1553-15/2010 (A/H5N1) segment 4 (HA)	2931.8	0.000000e+00	1665/1704 (97%)
EPI283813	A/duck/Egypt/1068s/2010 (A/H5N1) segment 4 (HA)	2931.8	0.000000e+00	1665/1704 (97%)
EPI283811	A/goose/Egypt/1057/2010 (A/H5N1) segment 4 (HA)	2931.8	0.000000e+00	1663/1701 (97%)
EPI283791	A/chicken/Egypt/1034/2010 (A/H5N1) segment 4 (HA)	2931.8	0.000000e+00	1663/1701 (97%)
EPI255400	A/Egypt/N09539/2009 (A/H5N1) segment 4 (HA)	2931.8	0.000000e+00	1665/1704 (97%)
EPI500113	A/duck/Egypt/Q4596A/2012 (A/H5N1) segment 4 (HA)	2926.2	0.000000e+00	1664/1704 (97%)
EPI369197	A/chicken/Egypt/12186F-9/2012 (A/H5N1) segment 4 (HA)	2926.2	0.000000e+00	1664/1704 (97%)
EPI340114	A/chicken/Egypt/117AF/2011 (A/H5N1) segment 4 (HA)	2926.2	0.000000e+00	1664/1704 (97%)
EPI340111	A/chicken/Egypt/119AF/2011 (A/H5N1) segment 4 (HA)	2926.2	0.000000e+00	1664/1704 (97%)
EPI597820	A/chicken/Egypt/1429AD/2014 (A/H5N1) segment 4 (HA)	2922.5	0.000000e+00	1667/1708 (97%)
EPI573334	A/chicken/Egypt/141/2014 (A/H5N1) segment 4 (HA)	2920.7	0.000000e+00	1648/1681 (98%)
EPI573333	A/chicken/Egypt/1427AF/2014 (A/H5N1) segment 4 (HA)	2920.7	0.000000e+00	1653/1689 (97%)
EPI573317	A/chicken/Egypt/1575S/2015 (A/H5N1) segment 4 (HA)	2920.7	0.000000e+00	1611/1626 (99%)
EPI550486	A/chicken/Egypt/14VIR784-5-1318S/2013 (A/H5N1) segment 4 (HA)	2920.7	0.000000e+00	1663/1704 (97%)
EPI504989	A/duck/Egypt/BSU-FA-1D/2012 (A/H5N1) segment 4 (HA)	2920.7	0.000000e+00	1663/1704 (97%)
EPI398585	A/chicken/Egypt/S3802D/2011 (A/H5N1) segment 4 (HA)	2920.7	0.000000e+00	1664/1705 (97%)
EPI398582	A/chicken/Egypt/S3806B/2011 (A/H5N1) segment 4 (HA)	2920.7	0.000000e+00	1664/1705 (97%)
EPI398579	A/chicken/Egypt/S3802B/2011 (A/H5N1) segment 4 (HA)	2920.7	0.000000e+00	1664/1705 (97%)
EPI398578	A/chicken/Egypt/S3806D/2011 (A/H5N1) segment 4 (HA)	2920.7	0.000000e+00	1664/1705 (97%)
EPI398573	A/chicken/Egypt/S3806A/2011 (A/H5N1) segment 4 (HA)	2920.7	0.000000e+00	1664/1705 (97%)
EPI340113	A/chicken/Egypt/118AF/2011 (A/H5N1) segment 4 (HA)	2920.7	0.000000e+00	1663/1704 (97%)
EPI340090	A/chicken/Egypt/1117AF/2011 (A/H5N1) segment 4 (HA)	2920.7	0.000000e+00	1663/1704 (97%)
EPI283815	A/duck/Egypt/106d/2010 (A/H5N1) segment 4 (HA)	2920.7	0.000000e+00	1661/1701 (97%)
EPI283782	A/chicken/Egypt/091317s/2009 (A/H5N1) segment 4 (HA)	2920.7	0.000000e+00	1663/1704 (97%)
EPI214881	A/chicken/Egypt/0920-NLQP/2009 (A/H5N1) segment 4 (HA)	2920.7	0.000000e+00	1663/1704 (97%)
EPI184804	A/Egypt/N00585/2009 (A/H5N1) segment 4 (HA)	2920.7	0.000000e+00	1663/1704 (97%)
EPI340088	A/duck/Egypt/11175SF/2011 (A/H5N1) segment 4 (HA)	2915.1	0.000000e+00	1664/1706 (97%)
EPI340086	A/goose/Egypt/11350S/2011 (A/H5N1) segment 4 (HA)	2915.1	0.000000e+00	1662/1704 (97%)
EPI283821	A/duck/Egypt/1063s/2010 (A/H5N1) segment 4 (HA)	2915.1	0.000000e+00	1660/1701 (97%)
EPI283789	A/chicken/Egypt/1029/2010 (A/H5N1) segment 4 (HA)	2915.1	0.000000e+00	1662/1704 (97%)

niman · October 27, 2015

LOCUS       KT792919                1751 bp    cRNA    linear   VRL 20-OCT-2015
DEFINITION  Influenza A virus (A/turkey/Israel/658/2015(H5N1)) segment 4
            hemagglutinin (HA) gene, complete cds.
ACCESSION   KT792919
VERSION     KT792919.1  GI:938454704
KEYWORDS    .
SOURCE      Influenza A virus (A/turkey/Israel/658/2015(H5N1))
  ORGANISM  Influenza A virus (A/turkey/Israel/658/2015(H5N1))
            Viruses; ssRNA viruses; ssRNA negative-strand viruses;
            Orthomyxoviridae; Influenzavirus A.
REFERENCE   1  (bases 1 to 1751)
  AUTHORS   Shkoda,I., Lapin,K., Simanov,L. and Lublin,A.
  TITLE     Highly pathogenic avian influenza A virus H5N1 isolated in Israel
            2015
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1751)
  AUTHORS   Shkoda,I., Lapin,K., Simanov,L. and Lublin,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-SEP-2015) Division of Avian Diseases, Kimron
            Veterinari Institute, P.O.Box 12, Bet Dagan 50250, Israel
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: SeqMan DNAStar v. DNASTAR Lasergene 8
            Sequencing Technology :: IonTorrent
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers


     source          1..1751
                     /organism="Influenza A virus
                     (A/turkey/Israel/658/2015(H5N1))"
                     /mol_type="viral cRNA"
                     /strain="A/turkey/Israel/658/2015"
                     /serotype="H5N1"
                     /host="turkey"
                     /db_xref="taxon:1720096"
                     /segment="4"
                     /country="Israel"
                     /collection_date="18-May-2015"
                     /note="passage details: E1"


     gene            4..1707
                     /gene="HA"


     CDS             4..1707
                     /gene="HA"
                     /function="receptor binding and fusion protein"
                     /codon_start=1
                     /product="hemagglutinin"
                     /protein_id="ALJ33534.1"
                     /db_xref="GI:938454705"
                     /translation="MEKIVLLLAIVSIVKSDQICIGYHANNSTEQVDTIMEKNVTVTH
                     AQDILEKTHNGKLCNLDGVKPLILRDCSVAGWLLGNPMCDEFLNVPEWSYIGEKISPA
                     NDLCYPGNFNDYEELKHLLSRINHFEKIHIIPKESWSYHEASGVSSACPYQGRSSFFR
                     NVVWLTKKNDAYPTIKKSYNNTNQEDLLVLWGIHHPNDAAEQTRLYQNPTTYISVGTS
                     TLNQRLVPKIATRSKVNGQSGRMEFFWTILKSNDAINFESNGNFIAPENAYKIVKKGD
                     STIMKSELEYSNCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNRLVLATGLRN
                     SPQGEKRRKKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQRAIDG
                     VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE
                     RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHRCDNECMESVRNGTYDYPQYS
                     EEARLKREEISGVKLESIGTYQILSIYSTVASSLALAIMVAGLSLWMCSNGSLQCRIC
                     I"


     sig_peptide     4..51
                     /gene="HA"


     mat_peptide     52..1038
                     /gene="HA"
                     /product="HA1"


     mat_peptide     1039..1704
                     /gene="HA"
                     /product="HA2"
ORIGIN      
        1 aaaatggaga aaatagtgct tcttcttgca atagtcagta ttgtcaaaag tgatcagatt
       61 tgcattggtt accatgcaaa caactcgaca gagcaggttg acacaataat ggaaaagaac
      121 gtcactgtta cacacgccca agacatactg gaaaagacac acaacgggaa actctgcaat
      181 ctagatggag tgaagcctct cattttaaga gattgtagtg tagctggatg gctcctcggg
      241 aacccaatgt gcgatgaatt cctcaatgtg ccggaatggt cttacatagg ggagaaaatc
      301 agtccggcca atgacctctg ttatccaggg aatttcaacg actatgaaga actgaaacac
      361 ctattgagca gaataaacca ttttgagaaa attcatatca ttcccaaaga gtcttggtca
      421 tatcatgaag cctcaggagt gagctcagca tgcccatacc aaggaagatc ctcctttttt
      481 agaaatgttg tatggcttac caaaaagaac gatgcatacc caacaataaa gaaaagttac
      541 aataatacta accaagaaga tcttttggta ctatggggga ttcaccatcc aaatgatgct
      601 gcagagcaga caaggcttta tcaaaaccca actacctata tctccgttgg gacatcaaca
      661 ctaaaccaga gattggtacc caaaatagct actagatcta aggtaaacgg gcaaagtgga
      721 aggatggagt tcttttggac aattttaaaa tcgaatgatg caataaactt tgagagcaat
      781 ggaaacttca ttgctccaga aaatgcatac aaaattgtca agaaaggaga ttcaacaatt
      841 atgaaaagtg agttggaata tagtaactgc aacaccaagt gtcagactcc aataggggcg
      901 ataaactcca gtatgccatt ccacaacatc caccctctca ccatcgggga atgccccaaa
      961 tatgtgaaat caaacagatt agtccttgct actgggctca ggaatagccc tcaaggagag
     1021 aaaagaagaa aaaagagagg actattcgga gccatagcag gctttataga gggaggatgg
     1081 cagggaatgg tagatggttg gtatgggtac caccatagca acgagcaggg gagtgggtac
     1141 gctgcagaca aagaatccac tcaaagggct atagatggag tcaccaataa ggtcaattcg
     1201 atcattgaca aaatgaacac tcagtttgag gctgttggaa gggaatttaa taacttagaa
     1261 aggagaatag aaaatttaaa caagaagatg gaagacggat tcctagatgt ctggacctat
     1321 aatgctgaac ttctggttct catggaaaat gagagaactc tagactttca tgactcaaat
     1381 gtcaagaatc tttatgacaa ggtccgacta cagcttaggg ataatgcaaa ggagcttggt
     1441 aacggttgtt tcgagttcta tcacagatgt gataatgaat gtatggaaag tgtaagaaac
     1501 ggaacgtatg actatcctca atattcagaa gaagcaagat taaaaagaga ggaaataagt
     1561 ggagtaaaat tggagtcaat aggaacttac caaatactgt caatttattc aacagtggcg
     1621 agctccctag cactggcaat catggtggct ggtctatctt tatggatgtg ctccaatgga
     1681 tcgctacaat gcagaatttg catttaaatt tgtgagttca aattgtagtt aaaaacaccc
     1741 ttgtttctac t

Segment-ID	Name	Score	E-Value	Identity
EPI669128	A/turkey/Israel/658/2015 (A/H5N1) segment 4 (HA)	3147.8	0.000000e+00	1704/1704 (100%)
EPI669130	A/turkey/Israel/633/2015 (A/H5N1) segment 4 (HA)	3114.6	0.000000e+00	1698/1704 (99%)
EPI579781	A/duck/Egypt/CLEVB-25_N00239/2015 (A/H5N1) segment 4 (HA)	3109.0	0.000000e+00	1697/1704 (99%)
EPI579780	A/duck/Egypt/CLEVB-24_N00238/2015 (A/H5N1) segment 4 (HA)	3109.0	0.000000e+00	1697/1704 (99%)
EPI669131	A/turkey/Israel/14/2015 (A/H5N1) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI669127	A/duck/Gaza/552/2015 (A/H5N1) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI584778	A/chicken/Egypt/A10351A/2014 (A/H5N1) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI669129	A/chicken/Qatanna/468/2015 (A/H5N1) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI579006	A/chicken/Egypt/CLEVB-1_N00215/2014 (A/H5N1) segment 4 (HA)	3077.6	0.000000e+00	1691/1704 (99%)
EPI669125	A/chicken/Gaza/797/2015 (A/H5N1) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI573252	A/Turkey/Egypt/AR235-S240NLQP/2014 (A/H5N1) segment 4 (HA)	3075.8	0.000000e+00	1689/1701 (99%)
EPI573244	A/chicken/Egypt/AR231-CA113NLQP/2014 (A/H5N1) segment 4 (HA)	3075.8	0.000000e+00	1689/1701 (99%)
EPI669126	A/duck/Gaza/872/2015 (A/H5N1) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI669123	A/chicken/Gaza/803/2015 (A/H5N1) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI669122	A/duck/Gaza/829/2015 (A/H5N1) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI669121	A/chicken/Gaza/869/2015 (A/H5N1) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI579784	A/chicken/Egypt/CLEVB-18_N00232/2015 (A/H5N1) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI579783	A/chicken/Egypt/CLEVB-21_N00235/2015 (A/H5N1) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI579782	A/chicken/Egypt/CLEVB-20_N00234/2015 (A/H5N1) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI579520	A/chicken/Egypt/CLEVB-17_N00231/2015 (A/H5N1) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI579325	A/chicken/Egypt/CLEVB-16_N00230/2014 (A/H5N1) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI579324	A/chicken/Egypt/CLEVB-19_N00233/2015 (A/H5N1) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI574132	A/Egypt/MOH-NRC-7305/2014 (A/H5N1) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI573268	A/Turkey/Egypt/AR238-SD177NLQP/2014 (A/H5N1) segment 4 (HA)	3070.3	0.000000e+00	1688/1701 (99%)
EPI557138	A/Quail/Egypt/BSU5514-AR2219/2014 (A/H5N1) segment 4 (HA)	3070.3	0.000000e+00	1688/1701 (99%)
EPI573248	A/chicken/Egypt/AR233-S283NLQP/2014 (A/H5N1) segment 4 (HA)	3066.6	0.000000e+00	1686/1699 (99%)
EPI669124	A/chicken/Gaza/799/2015 (A/H5N1) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI669120	A/chicken/Gaza/870/2015 (A/H5N1) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI573250	A/chicken/Egypt/AR234-FAOF8NLQP/2014 (A/H5N1) segment 4 (HA)	3064.7	0.000000e+00	1687/1701 (99%)
EPI642537	A/Egypt/682/2015 (A/H5N1) segment 4 (HA)	3059.2	0.000000e+00	1688/1704 (99%)
EPI573260	A/Duck/Egypt/AR236-A3NLQP/2015 (A/H5N1) segment 4 (HA)	3059.2	0.000000e+00	1686/1701 (99%)
EPI669119	A/chicken/Gaza/876/2015 (A/H5N1) segment 4 (HA)	3053.6	0.000000e+00	1687/1704 (99%)
EPI573246	A/Duck/Egypt/AR232-A13NLQP/2014 (A/H5N1) segment 4 (HA)	3048.1	0.000000e+00	1684/1701 (99%)
EPI584783	A/Egypt/MOH-NRC-8434/2014 (A/H5N1) segment 4 (HA)	3042.6	0.000000e+00	1685/1704 (98%)
EPI574125	A/Egypt/MOH-NRC-7271/2014 (A/H5N1) segment 4 (HA)	3042.6	0.000000e+00	1685/1704 (98%)
EPI550493	A/duck/Egypt/14VIR784-4-133AD/2013 (A/H5N1) segment 4 (HA)	3031.5	0.000000e+00	1683/1704 (98%)
EPI573315	A/duck/Egypt/BS-146RS-f6/2014 (A/H5N1) segment 4 (HA)	3024.1	0.000000e+00	1661/1673 (99%)
EPI573321	A/chicken/Egypt/153AF/2015 (A/H5N1) segment 4 (HA)	3022.2	0.000000e+00	1661/1674 (99%)
EPI573322	A/chicken/Egypt/152RS/2015 (A/H5N1) segment 4 (HA)	3016.7	0.000000e+00	1660/1674 (99%)
EPI573330	A/chicken/Egypt/1476CA/2014 (A/H5N1) segment 4 (HA)	3014.9	0.000000e+00	1660/1674 (99%)
EPI557194	A/Duck/Egypt/NLQP27SG-AR750/2013 (A/H5N1) segment 4 (HA)	3014.9	0.000000e+00	1678/1701 (98%)
EPI557178	A/chicken/Egypt/NLQP33SD-AR748/2013 (A/H5N1) segment 4 (HA)	3014.9	0.000000e+00	1679/1702 (98%)
EPI573328	A/chicken/Egypt/14168CA/2014 (A/H5N1) segment 4 (HA)	3011.2	0.000000e+00	1652/1663 (99%)
EPI573318	A/chicken/Egypt/1478CAL/2014 (A/H5N1) segment 4 (HA)	3011.2	0.000000e+00	1652/1663 (99%)
EPI500079	A/goose/Egypt/M7221D/2013 (A/H5N1) segment 4 (HA)	3003.8	0.000000e+00	1678/1704 (98%)
EPI500078	A/chicken/Egypt/M7217A/2013 (A/H5N1) segment 4 (HA)	3003.8	0.000000e+00	1678/1704 (98%)
EPI487342	A/chicken/Egypt/M7217B/2013 (A/H5N1) segment 4 (HA)	3003.8	0.000000e+00	1678/1704 (98%)
EPI500109	A/chicken/Egypt/Q5283C/2012 (A/H5N1) segment 4 (HA)	3000.1	0.000000e+00	1677/1704 (98%)
EPI573319	A/chicken/Egypt/152/2015 (A/H5N1) segment 4 (HA)	2998.2	0.000000e+00	1655/1671 (99%)
EPI504991	A/chicken/Egypt/BSU-BS-R24/2012 (A/H5N1) segment 4 (HA)	2998.2	0.000000e+00	1677/1704 (98%)
EPI504990	A/chicken/Egypt/BSU-BS-F27/2012 (A/H5N1) segment 4 (HA)	2998.2	0.000000e+00	1677/1704 (98%)
EPI348153	A/chicken/Egypt/11VIR4453-266/2010 (A/H5N1) segment 4 (HA)	2994.5	0.000000e+00	1676/1704 (98%)
EPI597822	A/duck/Egypt/1471SG/2014 (A/H5N1) segment 4 (HA)	2992.7	0.000000e+00	1677/1705 (98%)
EPI557218	A/chicken/Egypt/NLQP139V-AR753/2013 (A/H5N1) segment 4 (HA)	2992.7	0.000000e+00	1674/1701 (98%)
EPI340133	A/goose/Egypt/1117SF/2011 (A/H5N1) segment 4 (HA)	2992.7	0.000000e+00	1676/1704 (98%)
EPI597815	A/turkey/Egypt/1438S/2014 (A/H5N1) segment 4 (HA)	2987.2	0.000000e+00	1675/1704 (98%)
EPI500082	A/duck/Egypt/M7218B/2013 (A/H5N1) segment 4 (HA)	2987.2	0.000000e+00	1676/1705 (98%)
EPI340135	A/chicken/Egypt/1113/2011 (A/H5N1) segment 4 (HA)	2987.2	0.000000e+00	1675/1704 (98%)
EPI338733	A/duck/Egypt/M2583B/2010 (A/H5N1) segment 4 (HA)	2987.2	0.000000e+00	1676/1705 (98%)
EPI338732	A/duck/Egypt/M2583C/2010 (A/H5N1) segment 4 (HA)	2987.2	0.000000e+00	1676/1705 (98%)
EPI338616	A/duck/Egypt/M2583D/2010 (A/H5N1) segment 4 (HA)	2987.2	0.000000e+00	1676/1705 (98%)
EPI600754	A/chicken/Egypt/N05832-CLEVB754/2011 (A/H5N1) segment 4 (HA)	2981.6	0.000000e+00	1672/1701 (98%)
EPI597825	A/turkey/Egypt/1414CAL/2014 (A/H5N1) segment 4 (HA)	2981.6	0.000000e+00	1674/1704 (98%)
EPI597812	A/chicken/Egypt/1422S/2014 (A/H5N1) segment 4 (HA)	2981.6	0.000000e+00	1674/1704 (98%)
EPI372907	A/Egypt/N7562/2011 (A/H5N1) segment 4 (HA)	2981.6	0.000000e+00	1675/1705 (98%)
EPI348152	A/chicken/Egypt/11VIR4453-268/2010 (A/H5N1) segment 4 (HA)	2981.6	0.000000e+00	1674/1704 (98%)
EPI340138	A/duck/Egypt/1125S/2011 (A/H5N1) segment 4 (HA)	2981.6	0.000000e+00	1674/1704 (98%)
EPI340101	A/chicken/Egypt/1112AF/2011 (A/H5N1) segment 4 (HA)	2981.6	0.000000e+00	1674/1704 (98%)
EPI340087	A/duck/Egypt/11193SF/2011 (A/H5N1) segment 4 (HA)	2981.6	0.000000e+00	1674/1704 (98%)
EPI340085	A/chicken/Egypt/1118AF/2011 (A/H5N1) segment 4 (HA)	2981.6	0.000000e+00	1674/1704 (98%)
EPI338615	A/duck/Egypt/Q2645C/2010 (A/H5N1) segment 4 (HA)	2981.6	0.000000e+00	1674/1704 (98%)
EPI603916	A/duck/Egypt/154FAOFL/2015 (A/H5N1) segment 4 (HA)	2977.9	0.000000e+00	1631/1640 (99%)
EPI608783	A/turkey/Israel/188/2015 (A/H5N1) segment 4 (HA)	2976.1	0.000000e+00	1631/1641 (99%)
EPI608778	A/chicken/Israel/88/2015 (A/H5N1) segment 4 (HA)	2976.1	0.000000e+00	1631/1641 (99%)
EPI608777	A/turkey/Israel/107/2015 (A/H5N1) segment 4 (HA)	2976.1	0.000000e+00	1631/1641 (99%)
EPI597823	A/turkey/Egypt/14125S/2014 (A/H5N1) segment 4 (HA)	2976.1	0.000000e+00	1673/1704 (98%)
EPI597818	A/chicken/Egypt/1461S/2014 (A/H5N1) segment 4 (HA)	2976.1	0.000000e+00	1673/1704 (98%)
EPI597816	A/duck/Egypt/1435CAS/2014 (A/H5N1) segment 4 (HA)	2976.1	0.000000e+00	1674/1705 (98%)
EPI557136	A/Turkey/Egypt/BSU5114-AR2218/2014 (A/H5N1) segment 4 (HA)	2976.1	0.000000e+00	1671/1701 (98%)
EPI550500	A/duck/Egypt/14VIR784-6-1328S/2013 (A/H5N1) segment 4 (HA)	2976.1	0.000000e+00	1673/1704 (98%)
EPI373013	A/Egypt/N00166/2011 (A/H5N1) segment 4 (HA)	2976.1	0.000000e+00	1674/1705 (98%)
EPI340151	A/chicken/Egypt/10513S/2010 (A/H5N1) segment 4 (HA)	2976.1	0.000000e+00	1673/1704 (98%)
EPI340104	A/chicken/Egypt/117AD/2011 (A/H5N1) segment 4 (HA)	2976.1	0.000000e+00	1673/1704 (98%)
EPI550507	A/duck/Egypt/14VIR784-8-1339S/2013 (A/H5N1) segment 4 (HA)	2974.2	0.000000e+00	1672/1703 (98%)
EPI348158	A/chicken/Egypt/11VIR4453-109/VRLCU/2011 (A/H5N1) segment 4 (HA)	2974.2	0.000000e+00	1672/1703 (98%)
EPI373020	A/Egypt/N08932/2010 (A/H5N1) segment 4 (HA)	2972.4	0.000000e+00	1672/1704 (98%)
EPI348160	A/chicken/Egypt/11VIR4453-267/2010 (A/H5N1) segment 4 (HA)	2972.4	0.000000e+00	1671/1702 (98%)
EPI348157	A/chicken/Egypt/11VIR4453-15/VRLCU/2010 (A/H5N1) segment 4 (HA)	2972.4	0.000000e+00	1671/1702 (98%)
EPI348156	A/chicken/Egypt11VIR4453-269/2010 (A/H5N1) segment 4 (HA)	2972.4	0.000000e+00	1671/1703 (98%)
EPI608786	A/turkey/Israel/209/2015 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1630/1641 (99%)
EPI608780	A/turkey/Jenin/39/2015 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1630/1641 (99%)
EPI597817	A/chicken/Egypt/1460S/2014 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1672/1704 (98%)
EPI597814	A/chicken/Egypt/1429S/2014 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1672/1704 (98%)
EPI373016	A/Egypt/N10954/2010 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1672/1704 (98%)
EPI340106	A/duck/Egypt/1110AF/2011 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1672/1704 (98%)
EPI340103	A/chicken/Egypt/111766V/2011 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1672/1704 (98%)
EPI340092	A/chicken/Egypt/1155/2011 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1672/1704 (98%)
EPI338618	A/duck/Egypt/M2583A/2010 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1673/1705 (98%)
EPI338610	A/duck/Egypt/M3075B/2011 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1673/1705 (98%)
EPI608781	A/turkey/Israel/274/2015 (A/H5N1) segment 4 (HA)	2966.8	0.000000e+00	1628/1639 (99%)

niman · October 27, 2015

LOCUS       KT792921                1751 bp    cRNA    linear   VRL 20-OCT-2015
DEFINITION  Influenza A virus (A/turkey/Israel/633/2015(H5N1)) segment 4
            hemagglutinin (HA) gene, complete cds.
ACCESSION   KT792921
VERSION     KT792921.1  GI:938454708
KEYWORDS    .
SOURCE      Influenza A virus (A/turkey/Israel/633/2015(H5N1))
  ORGANISM  Influenza A virus (A/turkey/Israel/633/2015(H5N1))
            Viruses; ssRNA viruses; ssRNA negative-strand viruses;
            Orthomyxoviridae; Influenzavirus A.
REFERENCE   1  (bases 1 to 1751)
  AUTHORS   Shkoda,I., Lapin,K., Simanov,L. and Lublin,A.
  TITLE     Highly pathogenic avian influenza A virus H5N1 isolated in Israel
            2015
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1751)
  AUTHORS   Shkoda,I., Lapin,K., Simanov,L. and Lublin,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-SEP-2015) Division of Avian Diseases, Kimron
            Veterinari Institute, P.O.Box 12, Bet Dagan 50250, Israel
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: SeqMan DNAStar v. DNASTAR Lasergene 8
            Sequencing Technology :: IonTorrent
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers


     source          1..1751
                     /organism="Influenza A virus
                     (A/turkey/Israel/633/2015(H5N1))"
                     /mol_type="viral cRNA"
                     /strain="A/turkey/Israel/633/2015"
                     /serotype="H5N1"
                     /host="turkey"
                     /db_xref="taxon:1720095"
                     /segment="4"
                     /country="Israel"
                     /collection_date="11-May-2015"
                     /note="passage details: E1"


     gene            4..1707
                     /gene="HA"


     CDS             4..1707
                     /gene="HA"
                     /function="receptor binding and fusion protein"
                     /codon_start=1
                     /product="hemagglutinin"
                     /protein_id="ALJ33536.1"
                     /db_xref="GI:938454709"
                     /translation="MEKIVLLLAIVSIVKSDQICIGYHANNSTEQVDTIMEKNVTVTH
                     AQDILEKTHNGKLCNLDGVKPLILRDCSVAGWLLGNPMCDEFLNVPEWSYIVEKINPA
                     NDLCYPGNFNDYEELKHLLSRINHFEKIQIIPKESWSDHEASGVSSACPYQGRSSFFR
                     NVVWLTKKNDAYPTIKKSYNNTNQEDLLVLWGIHHPNDAAEQTRLYQNPTTYISVGTS
                     TLNQRLVPKIATRSKVNGQSGRMEFFWTILKSNDAINFESNGNFIAPENAYKIVKKGD
                     STIMKSELEYSNCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNRLVLATGLRN
                     SPQGEKRRKKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQRAIDG
                     VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE
                     RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHRCDNECMESVRNGTYDYPQYS
                     EEARLKREEISGVKLESIGTYQILSIYSTVASSLALAIMVAGLSLWMCSNGSLQCRIC
                     I"


     sig_peptide     4..51
                     /gene="HA"


     mat_peptide     52..1038
                     /gene="HA"
                     /product="HA1"


     mat_peptide     1039..1704
                     /gene="HA"
                     /product="HA2"
ORIGIN      
        1 aaaatggaga aaatagtgct tcttcttgca atagtcagta ttgtcaaaag tgatcagatt
       61 tgcattggtt accatgcaaa caactcgaca gagcaggttg acacaataat ggaaaagaac
      121 gtcactgtta cacacgccca agacatactg gaaaagacac acaacgggaa actctgcaat
      181 ctagatggag tgaagcctct cattttaaga gattgtagtg tagctggatg gctcctcggg
      241 aacccaatgt gcgatgaatt cctcaatgtg ccggaatggt cttacatagt ggagaaaatc
      301 aatccagcca atgacctctg ttatccaggg aatttcaacg actatgaaga actgaaacac
      361 ctattgagca gaataaacca ttttgagaaa attcagatca ttcccaaaga gtcttggtca
      421 gatcatgaag cctcgggagt gagctcagca tgcccatacc aaggaagatc ctcctttttt
      481 agaaatgttg tatggcttac caaaaagaac gatgcatacc caacaataaa gaaaagttac
      541 aataatacta accaagaaga tcttttggta ctatggggga ttcaccatcc aaatgatgct
      601 gcagagcaga caaggcttta tcaaaaccca actacctata tctccgttgg gacatcaaca
      661 ctaaaccaga gattggtacc caaaatagct actagatcta aggtaaacgg gcaaagtgga
      721 aggatggagt tcttttggac aattttaaaa tcgaatgatg caataaactt tgagagcaat
      781 ggaaacttca ttgctccaga aaatgcatac aaaattgtca agaaaggaga ttcaacaatt
      841 atgaaaagtg agttggaata tagtaactgc aacaccaagt gtcagactcc aataggggcg
      901 ataaactcca gtatgccatt ccacaacatc caccctctca ccatcgggga atgccccaaa
      961 tatgtgaaat caaacagatt agtccttgct actgggctca ggaatagccc tcaaggagag
     1021 aaaagaagaa aaaagagagg actattcgga gccatagcag gctttataga gggaggatgg
     1081 cagggaatgg tagatggttg gtatgggtac caccatagca acgagcaggg gagtgggtac
     1141 gctgcagaca aagaatccac tcaaagggct atagatggag tcaccaataa ggtcaattcg
     1201 atcattgaca aaatgaacac tcagtttgag gctgttggaa gggaatttaa taacttagaa
     1261 aggagaatag aaaatttaaa caagaagatg gaagacggat tcctagatgt ctggacctat
     1321 aatgctgaac ttctggttct catggaaaat gagagaactc tagactttca tgactcaaat
     1381 gtcaagaatc tttatgacaa ggtccgacta cagcttaggg ataatgcaaa ggagcttggt
     1441 aacggttgtt tcgagttcta tcacagatgt gataatgaat gtatggaaag tgtaagaaac
     1501 ggaacgtatg actatcctca atattcagaa gaagcaagat taaaaagaga ggaaataagt
     1561 ggagtaaaat tggagtcaat aggaacttac caaatactgt caatttattc aacagtggcg
     1621 agctccctag cactggcaat catggtggct ggtctatctt tatggatgtg ctccaatgga
     1681 tcgctacaat gcagaatttg catttaaatt tgtgagttca aattgtagtt aaaaacaccc
     1741 ttgtttctac t

Descriptions

Segment-ID	Name	Score	E-Value	Identity
EPI669130	A/turkey/Israel/633/2015 (A/H5N1) segment 4 (HA)	3147.8	0.000000e+00	1704/1704 (100%)
EPI579781	A/duck/Egypt/CLEVB-25_N00239/2015 (A/H5N1) segment 4 (HA)	3131.2	0.000000e+00	1701/1704 (99%)
EPI579780	A/duck/Egypt/CLEVB-24_N00238/2015 (A/H5N1) segment 4 (HA)	3131.2	0.000000e+00	1701/1704 (99%)
EPI669131	A/turkey/Israel/14/2015 (A/H5N1) segment 4 (HA)	3114.6	0.000000e+00	1698/1704 (99%)
EPI669128	A/turkey/Israel/658/2015 (A/H5N1) segment 4 (HA)	3114.6	0.000000e+00	1698/1704 (99%)
EPI579006	A/chicken/Egypt/CLEVB-1_N00215/2014 (A/H5N1) segment 4 (HA)	3110.9	0.000000e+00	1697/1704 (99%)
EPI669127	A/duck/Gaza/552/2015 (A/H5N1) segment 4 (HA)	3109.0	0.000000e+00	1697/1704 (99%)
EPI584778	A/chicken/Egypt/A10351A/2014 (A/H5N1) segment 4 (HA)	3109.0	0.000000e+00	1697/1704 (99%)
EPI573252	A/Turkey/Egypt/AR235-S240NLQP/2014 (A/H5N1) segment 4 (HA)	3109.0	0.000000e+00	1695/1701 (99%)
EPI669129	A/chicken/Qatanna/468/2015 (A/H5N1) segment 4 (HA)	3103.5	0.000000e+00	1696/1704 (99%)
EPI579784	A/chicken/Egypt/CLEVB-18_N00232/2015 (A/H5N1) segment 4 (HA)	3103.5	0.000000e+00	1696/1704 (99%)
EPI574132	A/Egypt/MOH-NRC-7305/2014 (A/H5N1) segment 4 (HA)	3103.5	0.000000e+00	1696/1704 (99%)
EPI573248	A/chicken/Egypt/AR233-S283NLQP/2014 (A/H5N1) segment 4 (HA)	3099.8	0.000000e+00	1692/1699 (99%)
EPI669125	A/chicken/Gaza/797/2015 (A/H5N1) segment 4 (HA)	3098.0	0.000000e+00	1695/1704 (99%)
EPI573244	A/chicken/Egypt/AR231-CA113NLQP/2014 (A/H5N1) segment 4 (HA)	3098.0	0.000000e+00	1693/1701 (99%)
EPI669126	A/duck/Gaza/872/2015 (A/H5N1) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI669123	A/chicken/Gaza/803/2015 (A/H5N1) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI669122	A/duck/Gaza/829/2015 (A/H5N1) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI669121	A/chicken/Gaza/869/2015 (A/H5N1) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI642537	A/Egypt/682/2015 (A/H5N1) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI579783	A/chicken/Egypt/CLEVB-21_N00235/2015 (A/H5N1) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI579782	A/chicken/Egypt/CLEVB-20_N00234/2015 (A/H5N1) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI579520	A/chicken/Egypt/CLEVB-17_N00231/2015 (A/H5N1) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI579325	A/chicken/Egypt/CLEVB-16_N00230/2014 (A/H5N1) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI579324	A/chicken/Egypt/CLEVB-19_N00233/2015 (A/H5N1) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI573268	A/Turkey/Egypt/AR238-SD177NLQP/2014 (A/H5N1) segment 4 (HA)	3092.4	0.000000e+00	1692/1701 (99%)
EPI573260	A/Duck/Egypt/AR236-A3NLQP/2015 (A/H5N1) segment 4 (HA)	3092.4	0.000000e+00	1692/1701 (99%)
EPI557138	A/Quail/Egypt/BSU5514-AR2219/2014 (A/H5N1) segment 4 (HA)	3092.4	0.000000e+00	1692/1701 (99%)
EPI669124	A/chicken/Gaza/799/2015 (A/H5N1) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI669120	A/chicken/Gaza/870/2015 (A/H5N1) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI573250	A/chicken/Egypt/AR234-FAOF8NLQP/2014 (A/H5N1) segment 4 (HA)	3086.9	0.000000e+00	1691/1701 (99%)
EPI573246	A/Duck/Egypt/AR232-A13NLQP/2014 (A/H5N1) segment 4 (HA)	3081.3	0.000000e+00	1690/1701 (99%)
EPI669119	A/chicken/Gaza/876/2015 (A/H5N1) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI574125	A/Egypt/MOH-NRC-7271/2014 (A/H5N1) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI584783	A/Egypt/MOH-NRC-8434/2014 (A/H5N1) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI573315	A/duck/Egypt/BS-146RS-f6/2014 (A/H5N1) segment 4 (HA)	3057.3	0.000000e+00	1667/1673 (99%)
EPI573321	A/chicken/Egypt/153AF/2015 (A/H5N1) segment 4 (HA)	3055.5	0.000000e+00	1667/1674 (99%)
EPI550493	A/duck/Egypt/14VIR784-4-133AD/2013 (A/H5N1) segment 4 (HA)	3053.6	0.000000e+00	1687/1704 (99%)
EPI573318	A/chicken/Egypt/1478CAL/2014 (A/H5N1) segment 4 (HA)	3044.4	0.000000e+00	1658/1663 (99%)
EPI573322	A/chicken/Egypt/152RS/2015 (A/H5N1) segment 4 (HA)	3038.9	0.000000e+00	1664/1674 (99%)
EPI573330	A/chicken/Egypt/1476CA/2014 (A/H5N1) segment 4 (HA)	3037.0	0.000000e+00	1664/1674 (99%)
EPI557194	A/Duck/Egypt/NLQP27SG-AR750/2013 (A/H5N1) segment 4 (HA)	3037.0	0.000000e+00	1682/1701 (98%)
EPI557178	A/chicken/Egypt/NLQP33SD-AR748/2013 (A/H5N1) segment 4 (HA)	3037.0	0.000000e+00	1683/1702 (98%)
EPI573328	A/chicken/Egypt/14168CA/2014 (A/H5N1) segment 4 (HA)	3033.3	0.000000e+00	1656/1663 (99%)
EPI573319	A/chicken/Egypt/152/2015 (A/H5N1) segment 4 (HA)	3031.5	0.000000e+00	1661/1671 (99%)
EPI500079	A/goose/Egypt/M7221D/2013 (A/H5N1) segment 4 (HA)	3025.9	0.000000e+00	1682/1704 (98%)
EPI500078	A/chicken/Egypt/M7217A/2013 (A/H5N1) segment 4 (HA)	3025.9	0.000000e+00	1682/1704 (98%)
EPI487342	A/chicken/Egypt/M7217B/2013 (A/H5N1) segment 4 (HA)	3025.9	0.000000e+00	1682/1704 (98%)
EPI500109	A/chicken/Egypt/Q5283C/2012 (A/H5N1) segment 4 (HA)	3022.2	0.000000e+00	1681/1704 (98%)
EPI504991	A/chicken/Egypt/BSU-BS-R24/2012 (A/H5N1) segment 4 (HA)	3020.4	0.000000e+00	1681/1704 (98%)
EPI504990	A/chicken/Egypt/BSU-BS-F27/2012 (A/H5N1) segment 4 (HA)	3020.4	0.000000e+00	1681/1704 (98%)
EPI348153	A/chicken/Egypt/11VIR4453-266/2010 (A/H5N1) segment 4 (HA)	3016.7	0.000000e+00	1680/1704 (98%)
EPI597822	A/duck/Egypt/1471SG/2014 (A/H5N1) segment 4 (HA)	3014.9	0.000000e+00	1681/1705 (98%)
EPI557218	A/chicken/Egypt/NLQP139V-AR753/2013 (A/H5N1) segment 4 (HA)	3014.9	0.000000e+00	1678/1701 (98%)
EPI340133	A/goose/Egypt/1117SF/2011 (A/H5N1) segment 4 (HA)	3014.9	0.000000e+00	1680/1704 (98%)
EPI597815	A/turkey/Egypt/1438S/2014 (A/H5N1) segment 4 (HA)	3009.3	0.000000e+00	1679/1704 (98%)
EPI500082	A/duck/Egypt/M7218B/2013 (A/H5N1) segment 4 (HA)	3009.3	0.000000e+00	1680/1705 (98%)
EPI340135	A/chicken/Egypt/1113/2011 (A/H5N1) segment 4 (HA)	3009.3	0.000000e+00	1679/1704 (98%)
EPI338733	A/duck/Egypt/M2583B/2010 (A/H5N1) segment 4 (HA)	3009.3	0.000000e+00	1680/1705 (98%)
EPI338732	A/duck/Egypt/M2583C/2010 (A/H5N1) segment 4 (HA)	3009.3	0.000000e+00	1680/1705 (98%)
EPI338616	A/duck/Egypt/M2583D/2010 (A/H5N1) segment 4 (HA)	3009.3	0.000000e+00	1680/1705 (98%)
EPI600754	A/chicken/Egypt/N05832-CLEVB754/2011 (A/H5N1) segment 4 (HA)	3003.8	0.000000e+00	1676/1701 (98%)
EPI597812	A/chicken/Egypt/1422S/2014 (A/H5N1) segment 4 (HA)	3003.8	0.000000e+00	1678/1704 (98%)
EPI372907	A/Egypt/N7562/2011 (A/H5N1) segment 4 (HA)	3003.8	0.000000e+00	1679/1705 (98%)
EPI348152	A/chicken/Egypt/11VIR4453-268/2010 (A/H5N1) segment 4 (HA)	3003.8	0.000000e+00	1678/1704 (98%)
EPI340138	A/duck/Egypt/1125S/2011 (A/H5N1) segment 4 (HA)	3003.8	0.000000e+00	1678/1704 (98%)
EPI340101	A/chicken/Egypt/1112AF/2011 (A/H5N1) segment 4 (HA)	3003.8	0.000000e+00	1678/1704 (98%)
EPI340087	A/duck/Egypt/11193SF/2011 (A/H5N1) segment 4 (HA)	3003.8	0.000000e+00	1678/1704 (98%)
EPI340085	A/chicken/Egypt/1118AF/2011 (A/H5N1) segment 4 (HA)	3003.8	0.000000e+00	1678/1704 (98%)
EPI338615	A/duck/Egypt/Q2645C/2010 (A/H5N1) segment 4 (HA)	3003.8	0.000000e+00	1678/1704 (98%)
EPI603916	A/duck/Egypt/154FAOFL/2015 (A/H5N1) segment 4 (HA)	3000.1	0.000000e+00	1635/1640 (99%)
EPI608783	A/turkey/Israel/188/2015 (A/H5N1) segment 4 (HA)	2998.2	0.000000e+00	1635/1641 (99%)
EPI608778	A/chicken/Israel/88/2015 (A/H5N1) segment 4 (HA)	2998.2	0.000000e+00	1635/1641 (99%)
EPI608777	A/turkey/Israel/107/2015 (A/H5N1) segment 4 (HA)	2998.2	0.000000e+00	1635/1641 (99%)
EPI597825	A/turkey/Egypt/1414CAL/2014 (A/H5N1) segment 4 (HA)	2998.2	0.000000e+00	1677/1704 (98%)
EPI597823	A/turkey/Egypt/14125S/2014 (A/H5N1) segment 4 (HA)	2998.2	0.000000e+00	1677/1704 (98%)
EPI597818	A/chicken/Egypt/1461S/2014 (A/H5N1) segment 4 (HA)	2998.2	0.000000e+00	1677/1704 (98%)
EPI597816	A/duck/Egypt/1435CAS/2014 (A/H5N1) segment 4 (HA)	2998.2	0.000000e+00	1678/1705 (98%)
EPI557136	A/Turkey/Egypt/BSU5114-AR2218/2014 (A/H5N1) segment 4 (HA)	2998.2	0.000000e+00	1675/1701 (98%)
EPI550500	A/duck/Egypt/14VIR784-6-1328S/2013 (A/H5N1) segment 4 (HA)	2998.2	0.000000e+00	1677/1704 (98%)
EPI373013	A/Egypt/N00166/2011 (A/H5N1) segment 4 (HA)	2998.2	0.000000e+00	1678/1705 (98%)
EPI340151	A/chicken/Egypt/10513S/2010 (A/H5N1) segment 4 (HA)	2998.2	0.000000e+00	1677/1704 (98%)
EPI340104	A/chicken/Egypt/117AD/2011 (A/H5N1) segment 4 (HA)	2998.2	0.000000e+00	1677/1704 (98%)
EPI550507	A/duck/Egypt/14VIR784-8-1339S/2013 (A/H5N1) segment 4 (HA)	2996.4	0.000000e+00	1676/1703 (98%)
EPI348158	A/chicken/Egypt/11VIR4453-109/VRLCU/2011 (A/H5N1) segment 4 (HA)	2996.4	0.000000e+00	1676/1703 (98%)
EPI373020	A/Egypt/N08932/2010 (A/H5N1) segment 4 (HA)	2994.5	0.000000e+00	1676/1704 (98%)
EPI348160	A/chicken/Egypt/11VIR4453-267/2010 (A/H5N1) segment 4 (HA)	2994.5	0.000000e+00	1675/1702 (98%)
EPI348157	A/chicken/Egypt/11VIR4453-15/VRLCU/2010 (A/H5N1) segment 4 (HA)	2994.5	0.000000e+00	1675/1702 (98%)
EPI348156	A/chicken/Egypt11VIR4453-269/2010 (A/H5N1) segment 4 (HA)	2994.5	0.000000e+00	1675/1703 (98%)
EPI608786	A/turkey/Israel/209/2015 (A/H5N1) segment 4 (HA)	2992.7	0.000000e+00	1634/1641 (99%)
EPI608780	A/turkey/Jenin/39/2015 (A/H5N1) segment 4 (HA)	2992.7	0.000000e+00	1634/1641 (99%)
EPI597817	A/chicken/Egypt/1460S/2014 (A/H5N1) segment 4 (HA)	2992.7	0.000000e+00	1676/1704 (98%)
EPI597814	A/chicken/Egypt/1429S/2014 (A/H5N1) segment 4 (HA)	2992.7	0.000000e+00	1676/1704 (98%)
EPI373016	A/Egypt/N10954/2010 (A/H5N1) segment 4 (HA)	2992.7	0.000000e+00	1676/1704 (98%)
EPI340106	A/duck/Egypt/1110AF/2011 (A/H5N1) segment 4 (HA)	2992.7	0.000000e+00	1676/1704 (98%)
EPI340103	A/chicken/Egypt/111766V/2011 (A/H5N1) segment 4 (HA)	2992.7	0.000000e+00	1676/1704 (98%)
EPI340092	A/chicken/Egypt/1155/2011 (A/H5N1) segment 4 (HA)	2992.7	0.000000e+00	1676/1704 (98%)
EPI338618	A/duck/Egypt/M2583A/2010 (A/H5N1) segment 4 (HA)	2992.7	0.000000e+00	1677/1705 (98%)
EPI338610	A/duck/Egypt/M3075B/2011 (A/H5N1) segment 4 (HA)	2992.7	0.000000e+00	1677/1705 (98%)
EPI608781	A/turkey/Israel/274/2015 (A/H5N1) segment 4 (HA)	2989.0	0.000000e+00	1632/1639 (99%)

niman · October 27, 2015

LOCUS       KT792922                1728 bp    cRNA    linear   VRL 20-OCT-2015
DEFINITION  Influenza A virus (A/turkey/Israel/14/2015(H5N1)) segment 4
            hemagglutinin (HA) gene, complete cds.
ACCESSION   KT792922
VERSION     KT792922.1  GI:938454710
KEYWORDS    .
SOURCE      Influenza A virus (A/turkey/Israel/14/2015(H5N1))
  ORGANISM  Influenza A virus (A/turkey/Israel/14/2015(H5N1))
            Viruses; ssRNA viruses; ssRNA negative-strand viruses;
            Orthomyxoviridae; Influenzavirus A.
REFERENCE   1  (bases 1 to 1728)
  AUTHORS   Shkoda,I., Lapin,K., Simanov,L. and Lublin,A.
  TITLE     Highly pathogenic avian influenza A virus H5N1 isolated in Israel
            2015
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1728)
  AUTHORS   Shkoda,I., Lapin,K., Simanov,L. and Lublin,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-SEP-2015) Division of Avian Diseases, Kimron
            Veterinari Institute, P.O.Box 12, Bet Dagan 50250, Israel
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: SeqMan DNAStar v. DNASTAR Lasergene 8
            Sequencing Technology :: IonTorrent
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers


     source          1..1728
                     /organism="Influenza A virus
                     (A/turkey/Israel/14/2015(H5N1))"
                     /mol_type="viral cRNA"
                     /strain="A/turkey/Israel/14/2015"
                     /serotype="H5N1"
                     /host="turkey"
                     /db_xref="taxon:1720094"
                     /segment="4"
                     /country="Israel"
                     /collection_date="16-Jan-2015"
                     /note="passage details: E1"


     gene            4..1707
                     /gene="HA"


     CDS             4..1707
                     /gene="HA"
                     /function="receptor binding and fusion protein"
                     /codon_start=1
                     /product="hemagglutinin"
                     /protein_id="ALJ33537.1"
                     /db_xref="GI:938454711"
                     /translation="MEKIVLLLAIVSIVKSDQICIGYHANNSTEQVDTIMEKNVTVTH
                     AQDILEKTHNGKLCNLDGVKPLILRDCSVAGWLLGNPMCDEFLNVPEWSYIVEKINPA
                     NDLCYPGNFNDYEELKHLLSRINHFEKIQIIPKDSWSDHEASGVSSACPYQGRSSFFR
                     NVVWLTKKNDAYPTIKKSYNNTNQEDLLVLWGIHHPNDAAEQTRLYQNPTTYISVGTS
                     TLNQRLVPKIATRSKVNGQSGRMEFFWTILKSNDAINFESNGNFIAPENAYKIVKKGD
                     STIMKSELEYSNCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNRLVLATGLRN
                     SPQGEKRRKKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQRAIDG
                     VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE
                     RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHRCDNECMESVRNGTYDYPQYS
                     EEARLKREEISGVKLESIGTYQILSIYSTVASSLALAIMVAGLSLWMCSNGSLQCRIC
                     I"


     sig_peptide     4..51
                     /gene="HA"


     mat_peptide     52..1038
                     /gene="HA"
                     /product="HA1"


     mat_peptide     1039..1704
                     /gene="HA"
                     /product="HA2"
ORIGIN      
        1 aaaatggaga aaatagtgct tcttcttgca atagtcagta ttgttaaaag tgatcagatt
       61 tgcattggtt accatgcaaa caactcgaca gagcaggttg acacaataat ggaaaagaac
      121 gtcactgtta cacacgccca agacatactg gaaaagacac acaacgggaa actctgcaat
      181 ctagatggag tgaagcctct cattttaaga gattgtagtg tagctggatg gctcctcggg
      241 aacccaatgt gcgatgaatt cctcaatgtg ccggaatggt cttacatagt ggagaaaatc
      301 aatccagcca atgacctctg ttatccaggg aatttcaacg actatgaaga actgaaacac
      361 ctattgagca gaataaacca ttttgagaaa attcagatca ttcccaaaga ttcttggtca
      421 gatcatgaag cctcaggagt gagctcagca tgcccatacc aaggaagatc ctcctttttt
      481 agaaatgttg tatggcttac caaaaagaac gatgcatacc caacaataaa gaaaagttac
      541 aataatacta accaagaaga tcttttggta ctatggggga ttcaccatcc aaatgatgct
      601 gcagagcaga caaggcttta tcaaaaccca actacctata tctccgttgg gacatcaaca
      661 ctaaaccaga gattggtacc caaaatagct actagatcta aggtaaacgg gcaaagtgga
      721 aggatggagt tcttttggac aattttaaaa tcgaatgatg caataaactt tgagagcaat
      781 ggaaacttca ttgctccaga aaatgcatac aaaattgtca agaaaggaga ttcaacaatt
      841 atgaaaagtg agttggaata tagtaactgc aacaccaagt gtcagactcc aataggggcg
      901 ataaactcca gtatgccatt ccacaacatc caccctctca ccatcgggga atgccccaaa
      961 tatgtgaaat caaacagatt agttcttgct actgggctca ggaatagccc tcaaggagag
     1021 aaaagaagaa aaaagagagg actattcgga gccatagcag gctttataga gggaggatgg
     1081 cagggaatgg tagatggttg gtatgggtac caccatagca acgagcaggg gagtgggtac
     1141 gctgcagaca aagaatccac tcaaagggct atagatggag tcaccaataa ggtcaattcg
     1201 atcattgaca aaatgaacac tcagtttgag gctgttggaa gggaatttaa taacttagaa
     1261 aggagaatag aaaatttaaa caagaagatg gaagacggat tcctagatgt ctggacttat
     1321 aatgctgaac ttctggttct catggaaaat gagagaactc tagactttca tgactcaaat
     1381 gtcaagaatc tttatgacaa ggtccgacta cagcttaggg ataatgcaaa ggagcttggt
     1441 aacggttgtt tcgagttcta tcacagatgt gataatgaat gtatggaaag tgtaagaaac
     1501 ggaacgtatg actaccctca atattcagaa gaagcaagat taaaaagaga ggaaataagt
     1561 ggagtaaaat tggagtcaat aggaacttac caaatactgt caatttattc aacagtggcg
     1621 agctccctag cactggcaat catggtggct ggtctatctt tatggatgtg ctccaatgga
     1681 tcgctacaat gcagaatttg catttaaatt tgtgagttca aattgtgt

Descriptions

Segment-ID	Name	Score	E-Value	Identity
EPI669131	A/turkey/Israel/14/2015 (A/H5N1) segment 4 (HA)	3147.8	0.000000e+00	1704/1704 (100%)
EPI584778	A/chicken/Egypt/A10351A/2014 (A/H5N1) segment 4 (HA)	3131.2	0.000000e+00	1701/1704 (99%)
EPI669129	A/chicken/Qatanna/468/2015 (A/H5N1) segment 4 (HA)	3125.7	0.000000e+00	1700/1704 (99%)
EPI579006	A/chicken/Egypt/CLEVB-1_N00215/2014 (A/H5N1) segment 4 (HA)	3122.0	0.000000e+00	1699/1704 (99%)
EPI579781	A/duck/Egypt/CLEVB-25_N00239/2015 (A/H5N1) segment 4 (HA)	3120.1	0.000000e+00	1699/1704 (99%)
EPI579780	A/duck/Egypt/CLEVB-24_N00238/2015 (A/H5N1) segment 4 (HA)	3120.1	0.000000e+00	1699/1704 (99%)
EPI573252	A/Turkey/Egypt/AR235-S240NLQP/2014 (A/H5N1) segment 4 (HA)	3120.1	0.000000e+00	1697/1701 (99%)
EPI573244	A/chicken/Egypt/AR231-CA113NLQP/2014 (A/H5N1) segment 4 (HA)	3120.1	0.000000e+00	1697/1701 (99%)
EPI669130	A/turkey/Israel/633/2015 (A/H5N1) segment 4 (HA)	3114.6	0.000000e+00	1698/1704 (99%)
EPI579784	A/chicken/Egypt/CLEVB-18_N00232/2015 (A/H5N1) segment 4 (HA)	3114.6	0.000000e+00	1698/1704 (99%)
EPI579783	A/chicken/Egypt/CLEVB-21_N00235/2015 (A/H5N1) segment 4 (HA)	3114.6	0.000000e+00	1698/1704 (99%)
EPI579782	A/chicken/Egypt/CLEVB-20_N00234/2015 (A/H5N1) segment 4 (HA)	3114.6	0.000000e+00	1698/1704 (99%)
EPI579520	A/chicken/Egypt/CLEVB-17_N00231/2015 (A/H5N1) segment 4 (HA)	3114.6	0.000000e+00	1698/1704 (99%)
EPI579325	A/chicken/Egypt/CLEVB-16_N00230/2014 (A/H5N1) segment 4 (HA)	3114.6	0.000000e+00	1698/1704 (99%)
EPI579324	A/chicken/Egypt/CLEVB-19_N00233/2015 (A/H5N1) segment 4 (HA)	3114.6	0.000000e+00	1698/1704 (99%)
EPI574132	A/Egypt/MOH-NRC-7305/2014 (A/H5N1) segment 4 (HA)	3114.6	0.000000e+00	1698/1704 (99%)
EPI573268	A/Turkey/Egypt/AR238-SD177NLQP/2014 (A/H5N1) segment 4 (HA)	3114.6	0.000000e+00	1696/1701 (99%)
EPI557138	A/Quail/Egypt/BSU5514-AR2219/2014 (A/H5N1) segment 4 (HA)	3114.6	0.000000e+00	1696/1701 (99%)
EPI573248	A/chicken/Egypt/AR233-S283NLQP/2014 (A/H5N1) segment 4 (HA)	3110.9	0.000000e+00	1694/1699 (99%)
EPI573250	A/chicken/Egypt/AR234-FAOF8NLQP/2014 (A/H5N1) segment 4 (HA)	3109.0	0.000000e+00	1695/1701 (99%)
EPI642537	A/Egypt/682/2015 (A/H5N1) segment 4 (HA)	3103.5	0.000000e+00	1696/1704 (99%)
EPI573260	A/Duck/Egypt/AR236-A3NLQP/2015 (A/H5N1) segment 4 (HA)	3103.5	0.000000e+00	1694/1701 (99%)
EPI669127	A/duck/Gaza/552/2015 (A/H5N1) segment 4 (HA)	3098.0	0.000000e+00	1695/1704 (99%)
EPI669128	A/turkey/Israel/658/2015 (A/H5N1) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI573246	A/Duck/Egypt/AR232-A13NLQP/2014 (A/H5N1) segment 4 (HA)	3092.4	0.000000e+00	1692/1701 (99%)
EPI669125	A/chicken/Gaza/797/2015 (A/H5N1) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI584783	A/Egypt/MOH-NRC-8434/2014 (A/H5N1) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI574125	A/Egypt/MOH-NRC-7271/2014 (A/H5N1) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI669126	A/duck/Gaza/872/2015 (A/H5N1) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI669123	A/chicken/Gaza/803/2015 (A/H5N1) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI669122	A/duck/Gaza/829/2015 (A/H5N1) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI669121	A/chicken/Gaza/869/2015 (A/H5N1) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI669124	A/chicken/Gaza/799/2015 (A/H5N1) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI669120	A/chicken/Gaza/870/2015 (A/H5N1) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI550493	A/duck/Egypt/14VIR784-4-133AD/2013 (A/H5N1) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI573315	A/duck/Egypt/BS-146RS-f6/2014 (A/H5N1) segment 4 (HA)	3068.4	0.000000e+00	1669/1673 (99%)
EPI573321	A/chicken/Egypt/153AF/2015 (A/H5N1) segment 4 (HA)	3066.6	0.000000e+00	1669/1674 (99%)
EPI669119	A/chicken/Gaza/876/2015 (A/H5N1) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI573330	A/chicken/Egypt/1476CA/2014 (A/H5N1) segment 4 (HA)	3059.2	0.000000e+00	1668/1674 (99%)
EPI557194	A/Duck/Egypt/NLQP27SG-AR750/2013 (A/H5N1) segment 4 (HA)	3059.2	0.000000e+00	1686/1701 (99%)
EPI573328	A/chicken/Egypt/14168CA/2014 (A/H5N1) segment 4 (HA)	3055.5	0.000000e+00	1660/1663 (99%)
EPI573318	A/chicken/Egypt/1478CAL/2014 (A/H5N1) segment 4 (HA)	3055.5	0.000000e+00	1660/1663 (99%)
EPI557178	A/chicken/Egypt/NLQP33SD-AR748/2013 (A/H5N1) segment 4 (HA)	3053.6	0.000000e+00	1686/1702 (99%)
EPI573322	A/chicken/Egypt/152RS/2015 (A/H5N1) segment 4 (HA)	3049.9	0.000000e+00	1666/1674 (99%)
EPI500079	A/goose/Egypt/M7221D/2013 (A/H5N1) segment 4 (HA)	3048.1	0.000000e+00	1686/1704 (98%)
EPI500078	A/chicken/Egypt/M7217A/2013 (A/H5N1) segment 4 (HA)	3048.1	0.000000e+00	1686/1704 (98%)
EPI487342	A/chicken/Egypt/M7217B/2013 (A/H5N1) segment 4 (HA)	3048.1	0.000000e+00	1686/1704 (98%)
EPI500109	A/chicken/Egypt/Q5283C/2012 (A/H5N1) segment 4 (HA)	3044.4	0.000000e+00	1685/1704 (98%)
EPI573319	A/chicken/Egypt/152/2015 (A/H5N1) segment 4 (HA)	3042.6	0.000000e+00	1663/1671 (99%)
EPI504991	A/chicken/Egypt/BSU-BS-R24/2012 (A/H5N1) segment 4 (HA)	3042.6	0.000000e+00	1685/1704 (98%)
EPI504990	A/chicken/Egypt/BSU-BS-F27/2012 (A/H5N1) segment 4 (HA)	3042.6	0.000000e+00	1685/1704 (98%)
EPI348153	A/chicken/Egypt/11VIR4453-266/2010 (A/H5N1) segment 4 (HA)	3038.9	0.000000e+00	1684/1704 (98%)
EPI597822	A/duck/Egypt/1471SG/2014 (A/H5N1) segment 4 (HA)	3037.0	0.000000e+00	1685/1705 (98%)
EPI557218	A/chicken/Egypt/NLQP139V-AR753/2013 (A/H5N1) segment 4 (HA)	3037.0	0.000000e+00	1682/1701 (98%)
EPI340133	A/goose/Egypt/1117SF/2011 (A/H5N1) segment 4 (HA)	3037.0	0.000000e+00	1684/1704 (98%)
EPI597815	A/turkey/Egypt/1438S/2014 (A/H5N1) segment 4 (HA)	3031.5	0.000000e+00	1683/1704 (98%)
EPI500082	A/duck/Egypt/M7218B/2013 (A/H5N1) segment 4 (HA)	3031.5	0.000000e+00	1684/1705 (98%)
EPI340135	A/chicken/Egypt/1113/2011 (A/H5N1) segment 4 (HA)	3031.5	0.000000e+00	1683/1704 (98%)
EPI338733	A/duck/Egypt/M2583B/2010 (A/H5N1) segment 4 (HA)	3031.5	0.000000e+00	1684/1705 (98%)
EPI338732	A/duck/Egypt/M2583C/2010 (A/H5N1) segment 4 (HA)	3031.5	0.000000e+00	1684/1705 (98%)
EPI338616	A/duck/Egypt/M2583D/2010 (A/H5N1) segment 4 (HA)	3031.5	0.000000e+00	1684/1705 (98%)
EPI608783	A/turkey/Israel/188/2015 (A/H5N1) segment 4 (HA)	3025.9	0.000000e+00	1640/1641 (99%)
EPI608778	A/chicken/Israel/88/2015 (A/H5N1) segment 4 (HA)	3025.9	0.000000e+00	1640/1641 (99%)
EPI608777	A/turkey/Israel/107/2015 (A/H5N1) segment 4 (HA)	3025.9	0.000000e+00	1640/1641 (99%)
EPI600754	A/chicken/Egypt/N05832-CLEVB754/2011 (A/H5N1) segment 4 (HA)	3025.9	0.000000e+00	1680/1701 (98%)
EPI597812	A/chicken/Egypt/1422S/2014 (A/H5N1) segment 4 (HA)	3025.9	0.000000e+00	1682/1704 (98%)
EPI372907	A/Egypt/N7562/2011 (A/H5N1) segment 4 (HA)	3025.9	0.000000e+00	1683/1705 (98%)
EPI348152	A/chicken/Egypt/11VIR4453-268/2010 (A/H5N1) segment 4 (HA)	3025.9	0.000000e+00	1682/1704 (98%)
EPI340138	A/duck/Egypt/1125S/2011 (A/H5N1) segment 4 (HA)	3025.9	0.000000e+00	1682/1704 (98%)
EPI340101	A/chicken/Egypt/1112AF/2011 (A/H5N1) segment 4 (HA)	3025.9	0.000000e+00	1682/1704 (98%)
EPI340087	A/duck/Egypt/11193SF/2011 (A/H5N1) segment 4 (HA)	3025.9	0.000000e+00	1682/1704 (98%)
EPI340085	A/chicken/Egypt/1118AF/2011 (A/H5N1) segment 4 (HA)	3025.9	0.000000e+00	1682/1704 (98%)
EPI338615	A/duck/Egypt/Q2645C/2010 (A/H5N1) segment 4 (HA)	3025.9	0.000000e+00	1682/1704 (98%)
EPI608786	A/turkey/Israel/209/2015 (A/H5N1) segment 4 (HA)	3020.4	0.000000e+00	1639/1641 (99%)
EPI597825	A/turkey/Egypt/1414CAL/2014 (A/H5N1) segment 4 (HA)	3020.4	0.000000e+00	1681/1704 (98%)
EPI597823	A/turkey/Egypt/14125S/2014 (A/H5N1) segment 4 (HA)	3020.4	0.000000e+00	1681/1704 (98%)
EPI597818	A/chicken/Egypt/1461S/2014 (A/H5N1) segment 4 (HA)	3020.4	0.000000e+00	1681/1704 (98%)
EPI597816	A/duck/Egypt/1435CAS/2014 (A/H5N1) segment 4 (HA)	3020.4	0.000000e+00	1682/1705 (98%)
EPI557136	A/Turkey/Egypt/BSU5114-AR2218/2014 (A/H5N1) segment 4 (HA)	3020.4	0.000000e+00	1679/1701 (98%)
EPI373013	A/Egypt/N00166/2011 (A/H5N1) segment 4 (HA)	3020.4	0.000000e+00	1682/1705 (98%)
EPI340151	A/chicken/Egypt/10513S/2010 (A/H5N1) segment 4 (HA)	3020.4	0.000000e+00	1681/1704 (98%)
EPI340104	A/chicken/Egypt/117AD/2011 (A/H5N1) segment 4 (HA)	3020.4	0.000000e+00	1681/1704 (98%)
EPI550507	A/duck/Egypt/14VIR784-8-1339S/2013 (A/H5N1) segment 4 (HA)	3018.5	0.000000e+00	1680/1703 (98%)
EPI348158	A/chicken/Egypt/11VIR4453-109/VRLCU/2011 (A/H5N1) segment 4 (HA)	3018.5	0.000000e+00	1680/1703 (98%)
EPI608781	A/turkey/Israel/274/2015 (A/H5N1) segment 4 (HA)	3016.7	0.000000e+00	1637/1639 (99%)
EPI373020	A/Egypt/N08932/2010 (A/H5N1) segment 4 (HA)	3016.7	0.000000e+00	1680/1704 (98%)
EPI348160	A/chicken/Egypt/11VIR4453-267/2010 (A/H5N1) segment 4 (HA)	3016.7	0.000000e+00	1679/1702 (98%)
EPI348157	A/chicken/Egypt/11VIR4453-15/VRLCU/2010 (A/H5N1) segment 4 (HA)	3016.7	0.000000e+00	1679/1702 (98%)
EPI348156	A/chicken/Egypt11VIR4453-269/2010 (A/H5N1) segment 4 (HA)	3016.7	0.000000e+00	1679/1703 (98%)
EPI608782	A/turkey/Israel/174/2015 (A/H5N1) segment 4 (HA)	3014.9	0.000000e+00	1638/1641 (99%)
EPI597817	A/chicken/Egypt/1460S/2014 (A/H5N1) segment 4 (HA)	3014.9	0.000000e+00	1681/1705 (98%)
EPI597814	A/chicken/Egypt/1429S/2014 (A/H5N1) segment 4 (HA)	3014.9	0.000000e+00	1680/1704 (98%)
EPI373016	A/Egypt/N10954/2010 (A/H5N1) segment 4 (HA)	3014.9	0.000000e+00	1680/1704 (98%)
EPI340106	A/duck/Egypt/1110AF/2011 (A/H5N1) segment 4 (HA)	3014.9	0.000000e+00	1680/1704 (98%)
EPI340103	A/chicken/Egypt/111766V/2011 (A/H5N1) segment 4 (HA)	3014.9	0.000000e+00	1680/1704 (98%)
EPI340092	A/chicken/Egypt/1155/2011 (A/H5N1) segment 4 (HA)	3014.9	0.000000e+00	1680/1704 (98%)
EPI338618	A/duck/Egypt/M2583A/2010 (A/H5N1) segment 4 (HA)	3014.9	0.000000e+00	1681/1705 (98%)
EPI338610	A/duck/Egypt/M3075B/2011 (A/H5N1) segment 4 (HA)	3014.9	0.000000e+00	1681/1705 (98%)
EPI608787	A/spur-winged lapwing/Israel/101/2015 (A/H5N1) segment 4 (HA)	3009.3	0.000000e+00	1637/1641 (99%)
EPI608780	A/turkey/Jenin/39/2015 (A/H5N1) segment 4 (HA)	3009.3	0.000000e+00	1637/1641 (99%)

niman · October 27, 2015

LOCUS       KT792920                1752 bp    cRNA    linear   VRL 20-OCT-2015
DEFINITION  Influenza A virus (A/chicken/Qatanna/468/2015(H5N1)) segment 4
            hemagglutinin (HA) gene, complete cds.
ACCESSION   KT792920
VERSION     KT792920.1  GI:938454706
KEYWORDS    .
SOURCE      Influenza A virus (A/chicken/Qatanna/468/2015(H5N1))
  ORGANISM  Influenza A virus (A/chicken/Qatanna/468/2015(H5N1))
            Viruses; ssRNA viruses; ssRNA negative-strand viruses;
            Orthomyxoviridae; Influenzavirus A.
REFERENCE   1  (bases 1 to 1752)
  AUTHORS   Shkoda,I., Lapin,K., Simanov,L. and Lublin,A.
  TITLE     Highly pathogenic avian influenza A virus H5N1 isolated in Israel
            2015
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1752)
  AUTHORS   Shkoda,I., Lapin,K., Simanov,L. and Lublin,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-SEP-2015) Division of Avian Diseases, Kimron
            Veterinari Institute, P.O.Box 12, Bet Dagan 50250, Israel
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: SeqMan DNAStar v. DNASTAR Lasergene 8
            Sequencing Technology :: IonTorrent
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers


     source          1..1752
                     /organism="Influenza A virus
                     (A/chicken/Qatanna/468/2015(H5N1))"
                     /mol_type="viral cRNA"
                     /strain="A/chicken/Qatanna/468/2015"
                     /serotype="H5N1"
                     /host="chicken"
                     /db_xref="taxon:1720090"
                     /segment="4"
                     /country="Israel"
                     /collection_date="22-Mar-2015"
                     /note="passage details: E1"


     gene            4..1707
                     /gene="HA"


     CDS             4..1707
                     /gene="HA"
                     /function="receptor binding and fusion protein"
                     /codon_start=1
                     /product="hemagglutinin"
                     /protein_id="ALJ33535.1"
                     /db_xref="GI:938454707"
                     /translation="MEKIVLLLAIVSIVKSDQICIGYHANNSTEQVDTIMEKNVTVTH
                     AQDILEKTHNGKLCNLDGVKPLILRDCSVAGWLLGNPMCDEFLNVPEWSYIVEKINPA
                     NDLCYPGNFNDYEELKHLLSRINHFEKIQIIPKDSWSDHEASGVSSACPYQGRPSFFR
                     NVVWLTKKNDAYPTIKKSYNNTNQEDLLVLWGIHHPNDAAEQTRLYQNPTTYISVGTS
                     TLNQRLVPKIATRSKVNGQSGRMEFFWTILKSNDAINFESNGNFIAPENAYKIVKKGD
                     STIMRSELEYSNCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNRLVLATGLRN
                     SPQGEKRRKKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQRAIDG
                     VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE
                     RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHRCDNECMESVRNGTYDYPQYS
                     EEARLKREEISGVKLESIGTYQILSIYSTVASSLALAIMVAGLSLWMCSNGSLQCRIC
                     I"


     sig_peptide     4..51
                     /gene="HA"


     mat_peptide     52..1038
                     /gene="HA"
                     /product="HA1"


     mat_peptide     1039..1704
                     /gene="HA"
                     /product="HA2"
ORIGIN      
        1 aaaatggaga aaatagtgct tcttcttgca atagtcagta ttgttaaaag tgatcagatt
       61 tgcattggtt accatgcaaa caactcgaca gagcaggttg acacaataat ggaaaagaac
      121 gtcactgtta cacacgccca agacatactg gaaaagacac acaacgggaa actctgcaat
      181 ctagatggag tgaagcctct cattttaaga gattgtagtg tagctggatg gctcctcggg
      241 aacccaatgt gcgatgaatt cctcaatgtg ccggaatggt cttacatagt ggagaaaatc
      301 aatccagcca atgacctctg ttatccaggg aatttcaacg actatgaaga actgaaacac
      361 ctattgagca gaataaacca ttttgagaaa attcagatca ttcccaaaga ttcttggtca
      421 gatcatgaag cctcaggagt gagctcagca tgcccatacc aaggaagacc ctcctttttt
      481 agaaatgttg tatggcttac caaaaagaac gatgcatacc caacaataaa gaaaagttac
      541 aataatacta accaagaaga tcttttggta ctatggggga ttcaccatcc aaatgatgct
      601 gcagagcaga caaggcttta tcaaaaccca actacctaca tctccgttgg gacatcaaca
      661 ctaaaccaga gattggtacc caaaatagct actagatcta aggtaaacgg gcaaagtgga
      721 aggatggagt tcttttggac aattttaaaa tcgaatgatg caataaactt tgagagcaat
      781 ggaaacttca ttgctccaga aaatgcatac aaaattgtca agaaaggaga ttcaacaatt
      841 atgagaagtg agttggaata tagtaactgc aacaccaagt gtcagactcc aataggggcg
      901 ataaactcca gtatgccatt ccacaacatc caccctctca ccatcgggga atgccccaaa
      961 tatgtgaaat caaacagatt agtccttgct actgggctca ggaatagccc tcaaggagag
     1021 aaaagaagaa aaaagagagg actattcgga gccatagcag gctttataga gggaggatgg
     1081 cagggaatgg tagatggttg gtatgggtac caccatagca acgagcaggg gagtgggtac
     1141 gctgcagaca aagaatccac tcaaagggct atagatggag tcaccaataa ggtcaattcg
     1201 atcattgaca aaatgaacac tcagtttgag gctgttggaa gggaatttaa taacttagaa
     1261 aggagaatag aaaatttaaa caagaagatg gaagacggat tcctagatgt ctggacttat
     1321 aatgctgaac ttctggttct catggaaaat gagagaactc tagactttca tgactcaaat
     1381 gtcaagaatc tttatgacaa ggtccgacta cagcttaggg ataatgcaaa ggagcttggt
     1441 aacggttgtt tcgagttcta tcacagatgt gataatgaat gtatggaaag tgtaagaaac
     1501 ggaacgtatg actaccctca atattcagaa gaagcaagat taaaaagaga ggaaataagt
     1561 ggagtaaaat tggagtcaat aggaacttac caaatactgt caatttattc aacagtggcg
     1621 agctccctag cactggcaat catggtggct ggtctatctt tatggatgtg ctccaatgga
     1681 tcgctacaat gcagaatttg catttaaatt tgtgagttca aattgtagtt aaaaacaccc
     1741 ttgtttctac ta

Descriptions

Segment-ID	Name	Score	E-Value	Identity
EPI669129	A/chicken/Qatanna/468/2015 (A/H5N1) segment 4 (HA)	3147.8	0.000000e+00	1704/1704 (100%)
EPI669131	A/turkey/Israel/14/2015 (A/H5N1) segment 4 (HA)	3125.7	0.000000e+00	1700/1704 (99%)
EPI584778	A/chicken/Egypt/A10351A/2014 (A/H5N1) segment 4 (HA)	3120.1	0.000000e+00	1699/1704 (99%)
EPI579006	A/chicken/Egypt/CLEVB-1_N00215/2014 (A/H5N1) segment 4 (HA)	3110.9	0.000000e+00	1697/1704 (99%)
EPI579781	A/duck/Egypt/CLEVB-25_N00239/2015 (A/H5N1) segment 4 (HA)	3109.0	0.000000e+00	1697/1704 (99%)
EPI579780	A/duck/Egypt/CLEVB-24_N00238/2015 (A/H5N1) segment 4 (HA)	3109.0	0.000000e+00	1697/1704 (99%)
EPI573252	A/Turkey/Egypt/AR235-S240NLQP/2014 (A/H5N1) segment 4 (HA)	3109.0	0.000000e+00	1695/1701 (99%)
EPI573244	A/chicken/Egypt/AR231-CA113NLQP/2014 (A/H5N1) segment 4 (HA)	3109.0	0.000000e+00	1695/1701 (99%)
EPI669130	A/turkey/Israel/633/2015 (A/H5N1) segment 4 (HA)	3103.5	0.000000e+00	1696/1704 (99%)
EPI579784	A/chicken/Egypt/CLEVB-18_N00232/2015 (A/H5N1) segment 4 (HA)	3103.5	0.000000e+00	1696/1704 (99%)
EPI579783	A/chicken/Egypt/CLEVB-21_N00235/2015 (A/H5N1) segment 4 (HA)	3103.5	0.000000e+00	1696/1704 (99%)
EPI579782	A/chicken/Egypt/CLEVB-20_N00234/2015 (A/H5N1) segment 4 (HA)	3103.5	0.000000e+00	1696/1704 (99%)
EPI579520	A/chicken/Egypt/CLEVB-17_N00231/2015 (A/H5N1) segment 4 (HA)	3103.5	0.000000e+00	1696/1704 (99%)
EPI579325	A/chicken/Egypt/CLEVB-16_N00230/2014 (A/H5N1) segment 4 (HA)	3103.5	0.000000e+00	1696/1704 (99%)
EPI579324	A/chicken/Egypt/CLEVB-19_N00233/2015 (A/H5N1) segment 4 (HA)	3103.5	0.000000e+00	1696/1704 (99%)
EPI574132	A/Egypt/MOH-NRC-7305/2014 (A/H5N1) segment 4 (HA)	3103.5	0.000000e+00	1696/1704 (99%)
EPI573268	A/Turkey/Egypt/AR238-SD177NLQP/2014 (A/H5N1) segment 4 (HA)	3103.5	0.000000e+00	1694/1701 (99%)
EPI557138	A/Quail/Egypt/BSU5514-AR2219/2014 (A/H5N1) segment 4 (HA)	3103.5	0.000000e+00	1694/1701 (99%)
EPI573248	A/chicken/Egypt/AR233-S283NLQP/2014 (A/H5N1) segment 4 (HA)	3099.8	0.000000e+00	1692/1699 (99%)
EPI584783	A/Egypt/MOH-NRC-8434/2014 (A/H5N1) segment 4 (HA)	3098.0	0.000000e+00	1695/1704 (99%)
EPI573250	A/chicken/Egypt/AR234-FAOF8NLQP/2014 (A/H5N1) segment 4 (HA)	3098.0	0.000000e+00	1693/1701 (99%)
EPI642537	A/Egypt/682/2015 (A/H5N1) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI573260	A/Duck/Egypt/AR236-A3NLQP/2015 (A/H5N1) segment 4 (HA)	3092.4	0.000000e+00	1692/1701 (99%)
EPI669127	A/duck/Gaza/552/2015 (A/H5N1) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI669128	A/turkey/Israel/658/2015 (A/H5N1) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI573246	A/Duck/Egypt/AR232-A13NLQP/2014 (A/H5N1) segment 4 (HA)	3081.3	0.000000e+00	1690/1701 (99%)
EPI669125	A/chicken/Gaza/797/2015 (A/H5N1) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI574125	A/Egypt/MOH-NRC-7271/2014 (A/H5N1) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI669126	A/duck/Gaza/872/2015 (A/H5N1) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI669123	A/chicken/Gaza/803/2015 (A/H5N1) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI669122	A/duck/Gaza/829/2015 (A/H5N1) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI669121	A/chicken/Gaza/869/2015 (A/H5N1) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI669124	A/chicken/Gaza/799/2015 (A/H5N1) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI669120	A/chicken/Gaza/870/2015 (A/H5N1) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI550493	A/duck/Egypt/14VIR784-4-133AD/2013 (A/H5N1) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI573315	A/duck/Egypt/BS-146RS-f6/2014 (A/H5N1) segment 4 (HA)	3057.3	0.000000e+00	1667/1673 (99%)
EPI573321	A/chicken/Egypt/153AF/2015 (A/H5N1) segment 4 (HA)	3055.5	0.000000e+00	1667/1674 (99%)
EPI669119	A/chicken/Gaza/876/2015 (A/H5N1) segment 4 (HA)	3053.6	0.000000e+00	1687/1704 (99%)
EPI573330	A/chicken/Egypt/1476CA/2014 (A/H5N1) segment 4 (HA)	3048.1	0.000000e+00	1666/1674 (99%)
EPI557194	A/Duck/Egypt/NLQP27SG-AR750/2013 (A/H5N1) segment 4 (HA)	3048.1	0.000000e+00	1684/1701 (99%)
EPI573328	A/chicken/Egypt/14168CA/2014 (A/H5N1) segment 4 (HA)	3044.4	0.000000e+00	1658/1663 (99%)
EPI573318	A/chicken/Egypt/1478CAL/2014 (A/H5N1) segment 4 (HA)	3044.4	0.000000e+00	1658/1663 (99%)
EPI500109	A/chicken/Egypt/Q5283C/2012 (A/H5N1) segment 4 (HA)	3044.4	0.000000e+00	1685/1704 (98%)
EPI557178	A/chicken/Egypt/NLQP33SD-AR748/2013 (A/H5N1) segment 4 (HA)	3042.6	0.000000e+00	1684/1702 (98%)
EPI573322	A/chicken/Egypt/152RS/2015 (A/H5N1) segment 4 (HA)	3038.9	0.000000e+00	1664/1674 (99%)
EPI500079	A/goose/Egypt/M7221D/2013 (A/H5N1) segment 4 (HA)	3037.0	0.000000e+00	1684/1704 (98%)
EPI500078	A/chicken/Egypt/M7217A/2013 (A/H5N1) segment 4 (HA)	3037.0	0.000000e+00	1684/1704 (98%)
EPI487342	A/chicken/Egypt/M7217B/2013 (A/H5N1) segment 4 (HA)	3037.0	0.000000e+00	1684/1704 (98%)
EPI573319	A/chicken/Egypt/152/2015 (A/H5N1) segment 4 (HA)	3031.5	0.000000e+00	1661/1671 (99%)
EPI504991	A/chicken/Egypt/BSU-BS-R24/2012 (A/H5N1) segment 4 (HA)	3031.5	0.000000e+00	1683/1704 (98%)
EPI504990	A/chicken/Egypt/BSU-BS-F27/2012 (A/H5N1) segment 4 (HA)	3031.5	0.000000e+00	1683/1704 (98%)
EPI348153	A/chicken/Egypt/11VIR4453-266/2010 (A/H5N1) segment 4 (HA)	3027.8	0.000000e+00	1682/1704 (98%)
EPI597822	A/duck/Egypt/1471SG/2014 (A/H5N1) segment 4 (HA)	3025.9	0.000000e+00	1683/1705 (98%)
EPI557218	A/chicken/Egypt/NLQP139V-AR753/2013 (A/H5N1) segment 4 (HA)	3025.9	0.000000e+00	1680/1701 (98%)
EPI340133	A/goose/Egypt/1117SF/2011 (A/H5N1) segment 4 (HA)	3025.9	0.000000e+00	1682/1704 (98%)
EPI597815	A/turkey/Egypt/1438S/2014 (A/H5N1) segment 4 (HA)	3020.4	0.000000e+00	1681/1704 (98%)
EPI500082	A/duck/Egypt/M7218B/2013 (A/H5N1) segment 4 (HA)	3020.4	0.000000e+00	1682/1705 (98%)
EPI340135	A/chicken/Egypt/1113/2011 (A/H5N1) segment 4 (HA)	3020.4	0.000000e+00	1681/1704 (98%)
EPI338733	A/duck/Egypt/M2583B/2010 (A/H5N1) segment 4 (HA)	3020.4	0.000000e+00	1682/1705 (98%)
EPI338732	A/duck/Egypt/M2583C/2010 (A/H5N1) segment 4 (HA)	3020.4	0.000000e+00	1682/1705 (98%)
EPI338616	A/duck/Egypt/M2583D/2010 (A/H5N1) segment 4 (HA)	3020.4	0.000000e+00	1682/1705 (98%)
EPI348160	A/chicken/Egypt/11VIR4453-267/2010 (A/H5N1) segment 4 (HA)	3016.7	0.000000e+00	1679/1702 (98%)
EPI600754	A/chicken/Egypt/N05832-CLEVB754/2011 (A/H5N1) segment 4 (HA)	3014.9	0.000000e+00	1678/1701 (98%)
EPI597812	A/chicken/Egypt/1422S/2014 (A/H5N1) segment 4 (HA)	3014.9	0.000000e+00	1680/1704 (98%)
EPI372907	A/Egypt/N7562/2011 (A/H5N1) segment 4 (HA)	3014.9	0.000000e+00	1681/1705 (98%)
EPI348152	A/chicken/Egypt/11VIR4453-268/2010 (A/H5N1) segment 4 (HA)	3014.9	0.000000e+00	1680/1704 (98%)
EPI340138	A/duck/Egypt/1125S/2011 (A/H5N1) segment 4 (HA)	3014.9	0.000000e+00	1680/1704 (98%)
EPI340101	A/chicken/Egypt/1112AF/2011 (A/H5N1) segment 4 (HA)	3014.9	0.000000e+00	1680/1704 (98%)
EPI340087	A/duck/Egypt/11193SF/2011 (A/H5N1) segment 4 (HA)	3014.9	0.000000e+00	1680/1704 (98%)
EPI340085	A/chicken/Egypt/1118AF/2011 (A/H5N1) segment 4 (HA)	3014.9	0.000000e+00	1680/1704 (98%)
EPI338615	A/duck/Egypt/Q2645C/2010 (A/H5N1) segment 4 (HA)	3014.9	0.000000e+00	1680/1704 (98%)
EPI338610	A/duck/Egypt/M3075B/2011 (A/H5N1) segment 4 (HA)	3014.9	0.000000e+00	1681/1705 (98%)
EPI348156	A/chicken/Egypt11VIR4453-269/2010 (A/H5N1) segment 4 (HA)	3011.2	0.000000e+00	1678/1703 (98%)
EPI608780	A/turkey/Jenin/39/2015 (A/H5N1) segment 4 (HA)	3009.3	0.000000e+00	1637/1641 (99%)
EPI597825	A/turkey/Egypt/1414CAL/2014 (A/H5N1) segment 4 (HA)	3009.3	0.000000e+00	1679/1704 (98%)
EPI597823	A/turkey/Egypt/14125S/2014 (A/H5N1) segment 4 (HA)	3009.3	0.000000e+00	1679/1704 (98%)
EPI597818	A/chicken/Egypt/1461S/2014 (A/H5N1) segment 4 (HA)	3009.3	0.000000e+00	1679/1704 (98%)
EPI597816	A/duck/Egypt/1435CAS/2014 (A/H5N1) segment 4 (HA)	3009.3	0.000000e+00	1680/1705 (98%)
EPI557136	A/Turkey/Egypt/BSU5114-AR2218/2014 (A/H5N1) segment 4 (HA)	3009.3	0.000000e+00	1677/1701 (98%)
EPI373013	A/Egypt/N00166/2011 (A/H5N1) segment 4 (HA)	3009.3	0.000000e+00	1680/1705 (98%)
EPI340151	A/chicken/Egypt/10513S/2010 (A/H5N1) segment 4 (HA)	3009.3	0.000000e+00	1679/1704 (98%)
EPI340104	A/chicken/Egypt/117AD/2011 (A/H5N1) segment 4 (HA)	3009.3	0.000000e+00	1679/1704 (98%)
EPI550507	A/duck/Egypt/14VIR784-8-1339S/2013 (A/H5N1) segment 4 (HA)	3007.5	0.000000e+00	1678/1703 (98%)
EPI348158	A/chicken/Egypt/11VIR4453-109/VRLCU/2011 (A/H5N1) segment 4 (HA)	3007.5	0.000000e+00	1678/1703 (98%)
EPI373020	A/Egypt/N08932/2010 (A/H5N1) segment 4 (HA)	3005.6	0.000000e+00	1678/1704 (98%)
EPI348157	A/chicken/Egypt/11VIR4453-15/VRLCU/2010 (A/H5N1) segment 4 (HA)	3005.6	0.000000e+00	1677/1702 (98%)
EPI608783	A/turkey/Israel/188/2015 (A/H5N1) segment 4 (HA)	3003.8	0.000000e+00	1636/1641 (99%)
EPI608778	A/chicken/Israel/88/2015 (A/H5N1) segment 4 (HA)	3003.8	0.000000e+00	1636/1641 (99%)
EPI608777	A/turkey/Israel/107/2015 (A/H5N1) segment 4 (HA)	3003.8	0.000000e+00	1636/1641 (99%)
EPI597817	A/chicken/Egypt/1460S/2014 (A/H5N1) segment 4 (HA)	3003.8	0.000000e+00	1678/1704 (98%)
EPI597814	A/chicken/Egypt/1429S/2014 (A/H5N1) segment 4 (HA)	3003.8	0.000000e+00	1678/1704 (98%)
EPI373016	A/Egypt/N10954/2010 (A/H5N1) segment 4 (HA)	3003.8	0.000000e+00	1678/1704 (98%)
EPI340106	A/duck/Egypt/1110AF/2011 (A/H5N1) segment 4 (HA)	3003.8	0.000000e+00	1678/1704 (98%)
EPI340103	A/chicken/Egypt/111766V/2011 (A/H5N1) segment 4 (HA)	3003.8	0.000000e+00	1678/1704 (98%)
EPI340092	A/chicken/Egypt/1155/2011 (A/H5N1) segment 4 (HA)	3003.8	0.000000e+00	1678/1704 (98%)
EPI338618	A/duck/Egypt/M2583A/2010 (A/H5N1) segment 4 (HA)	3003.8	0.000000e+00	1679/1705 (98%)
EPI608786	A/turkey/Israel/209/2015 (A/H5N1) segment 4 (HA)	2998.2	0.000000e+00	1635/1641 (99%)
EPI597813	A/chicken/Egypt/1412SD/2014 (A/H5N1) segment 4 (HA)	2998.2	0.000000e+00	1677/1704 (98%)
EPI550500	A/duck/Egypt/14VIR784-6-1328S/2013 (A/H5N1) segment 4 (HA)	2998.2	0.000000e+00	1677/1704 (98%)
EPI537618	A/Egypt/N01754/2014 (A/H5N1) segment 4 (HA)	2998.2	0.000000e+00	1677/1704 (98%)

niman · October 27, 2015

LOCUS       KT792910                1750 bp    cRNA    linear   VRL 20-OCT-2015
DEFINITION  Influenza A virus (A/chicken/Gaza/876/2015(H5N1)) segment 4
            hemagglutinin (HA) gene, complete cds.
ACCESSION   KT792910
VERSION     KT792910.1  GI:938454686
KEYWORDS    .
SOURCE      Influenza A virus (A/chicken/Gaza/876/2015(H5N1))
  ORGANISM  Influenza A virus (A/chicken/Gaza/876/2015(H5N1))
            Viruses; ssRNA viruses; ssRNA negative-strand viruses;
            Orthomyxoviridae; Influenzavirus A.
REFERENCE   1  (bases 1 to 1750)
  AUTHORS   Shkoda,I., Lapin,K., Simanov,L., Alnakhal,R. and Lublin,A.
  TITLE     Highly pathogenic avian influenza A virus H5N1 isolated in Israel
            2015
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1750)
  AUTHORS   Shkoda,I., Lapin,K., Simanov,L., Alnakhal,R. and Lublin,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-SEP-2015) Division of Avian Diseases, Kimron
            Veterinari Institute, P.O.Box 12, Bet Dagan 50250, Israel
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: SeqMan DNAStar v. DNASTAR Lasergene 8
            Sequencing Technology :: IonTorrent
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers


     source          1..1750
                     /organism="Influenza A virus
                     (A/chicken/Gaza/876/2015(H5N1))"
                     /mol_type="viral cRNA"
                     /strain="A/chicken/Gaza/876/2015"
                     /serotype="H5N1"
                     /host="chicken"
                     /db_xref="taxon:1720089"
                     /segment="4"
                     /country="Israel"
                     /collection_date="29-Jun-2015"
                     /note="passage details: E1"


     gene            4..1707
                     /gene="HA"


     CDS             4..1707
                     /gene="HA"
                     /function="receptor binding and fusion protein"
                     /codon_start=1
                     /product="hemagglutinin"
                     /protein_id="ALJ33525.1"
                     /db_xref="GI:938454687"
                     /translation="MEKIVLLLAIASIVKSDQICIGYHANNSTEQVDTIMEKNVTVTH
                     AQHILEKTHNGKLCNLDGVKPLILRDCSVAGWLLGNPMCDEFLNVPEWSYILKKINPA
                     NDLCYPGNFNDYEELKHLLSRINHFEKIQIIPKDSWSDHEASGVSSACPYQGRSSFFR
                     NVVWLTKKNDAYPTIKKSYNNTNQEDLLVLWGIHHPNDAAEQTRLYQNPTTYISVGTS
                     TLNQRLVPKIATRSKVNGQSGRMEFFWTILKSNDAINFESNGNFIAPENAYKIVKKGD
                     STIMKSELEYSNCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNRLVLATGLRN
                     SPQGEKRRKKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQRAIDG
                     VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE
                     RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHRCDNECMESVRNGTYDYPQYS
                     EEARLKREEISGVKLESIGTYQILSIYSTVASSLALAIMVAGLSLWMCSNGSLQCRIC
                     I"


     sig_peptide     4..51
                     /gene="HA"


     mat_peptide     52..1038
                     /gene="HA"
                     /product="HA1"


     mat_peptide     1039..1704
                     /gene="HA"
                     /product="HA2"
ORIGIN      
        1 aaaatggaga aaatagtgct tcttcttgca atagccagta ttgtcaaaag tgatcagatt
       61 tgcattggtt accatgcaaa caactcgaca gagcaggttg acacaataat ggaaaagaac
      121 gtcactgtta cacacgccca acacatactg gaaaagacac acaacgggaa actctgcaat
      181 ctagatggag tgaagcctct cattttaaga gattgtagtg tagctggatg gctcctcggg
      241 aacccaatgt gcgatgagtt cctcaatgtg ccggaatggt cttacatact gaagaaaatc
      301 aatccagcca atgacctctg ttatccaggg aatttcaacg actatgaaga actgaaacac
      361 ctattgagca gaataaacca ttttgagaaa attcagatca ttcccaaaga ttcttggtca
      421 gatcatgaag cctcaggagt gagctcagca tgcccatacc aaggaagatc ctcctttttt
      481 agaaatgttg tatggcttac caaaaagaac gatgcatacc caacaataaa gaaaagttac
      541 aataatacta accaagaaga tcttttggta ctatggggga ttcaccatcc aaatgatgct
      601 gcagagcaga caaggcttta tcaaaaccca actacctata tctccgttgg gacatcaaca
      661 ctaaaccaga gattggtacc caaaatagct actagatcta aggtaaacgg gcaaagtgga
      721 aggatggagt tcttttggac aattttaaaa tcgaatgatg caataaactt tgagagcaat
      781 ggaaacttca ttgctccaga aaatgcatac aaaattgtca agaaaggaga ttcaacaatt
      841 atgaaaagtg agttggaata tagtaactgc aacaccaagt gtcagactcc aataggggcg
      901 ataaactcca gtatgccatt ccacaacatc caccctctca ccatcgggga atgccccaaa
      961 tatgtgaaat caaacagatt agtccttgct actgggctca ggaatagccc tcaaggagag
     1021 aaaagaagaa aaaagagagg actattcgga gccatagcag gttttataga gggaggatgg
     1081 cagggaatgg tagatggttg gtatgggtac caccatagca acgagcaggg gagtgggtac
     1141 gctgcagaca aagaatccac tcaaagggct atagatggag tcaccaataa ggtcaattca
     1201 atcattgaca aaatgaacac ccagtttgag gctgttggaa gggaatttaa taacttagaa
     1261 aggagaatag aaaatttgaa caagaagatg gaagacggat tcctagatgt ctggacctat
     1321 aatgctgaac ttctggttct catggaaaat gagagaactc tagactttca tgactcaaat
     1381 gtcaaaaatc tttatgacaa ggtccgacta cagcttaggg ataatgcaaa ggagcttggt
     1441 aacggctgtt tcgagttcta tcacagatgt gataatgaat gtatggaaag tgtaagaaac
     1501 ggaacgtatg actatcctca atattcagaa gaagcaagat taaaaagaga ggaaataagt
     1561 ggagtaaaat tggagtcaat aggaacttac caaatactgt caatttattc aacagtggcg
     1621 agctccctag cactggcaat catggtggct ggtctatctt tatggatgtg ctccaatgga
     1681 tcgctacaat gcagaatttg catttaaatt tgtgagttca aattgtagtt aaaaacaccc
     1741 ttgtttctac

Descriptions

Segment-ID	Name	Score	E-Value	Identity
EPI669119	A/chicken/Gaza/876/2015 (A/H5N1) segment 4 (HA)	3147.8	0.000000e+00	1704/1704 (100%)
EPI669126	A/duck/Gaza/872/2015 (A/H5N1) segment 4 (HA)	3131.2	0.000000e+00	1701/1704 (99%)
EPI669125	A/chicken/Gaza/797/2015 (A/H5N1) segment 4 (HA)	3125.7	0.000000e+00	1700/1704 (99%)
EPI669123	A/chicken/Gaza/803/2015 (A/H5N1) segment 4 (HA)	3120.1	0.000000e+00	1699/1704 (99%)
EPI669122	A/duck/Gaza/829/2015 (A/H5N1) segment 4 (HA)	3120.1	0.000000e+00	1699/1704 (99%)
EPI669121	A/chicken/Gaza/869/2015 (A/H5N1) segment 4 (HA)	3120.1	0.000000e+00	1699/1704 (99%)
EPI669124	A/chicken/Gaza/799/2015 (A/H5N1) segment 4 (HA)	3114.6	0.000000e+00	1698/1704 (99%)
EPI669120	A/chicken/Gaza/870/2015 (A/H5N1) segment 4 (HA)	3114.6	0.000000e+00	1698/1704 (99%)
EPI669127	A/duck/Gaza/552/2015 (A/H5N1) segment 4 (HA)	3103.5	0.000000e+00	1696/1704 (99%)
EPI579781	A/duck/Egypt/CLEVB-25_N00239/2015 (A/H5N1) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI579780	A/duck/Egypt/CLEVB-24_N00238/2015 (A/H5N1) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI669130	A/turkey/Israel/633/2015 (A/H5N1) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI669131	A/turkey/Israel/14/2015 (A/H5N1) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI584778	A/chicken/Egypt/A10351A/2014 (A/H5N1) segment 4 (HA)	3059.2	0.000000e+00	1688/1704 (99%)
EPI669129	A/chicken/Qatanna/468/2015 (A/H5N1) segment 4 (HA)	3053.6	0.000000e+00	1687/1704 (99%)
EPI669128	A/turkey/Israel/658/2015 (A/H5N1) segment 4 (HA)	3053.6	0.000000e+00	1687/1704 (99%)
EPI573268	A/Turkey/Egypt/AR238-SD177NLQP/2014 (A/H5N1) segment 4 (HA)	3053.6	0.000000e+00	1685/1701 (99%)
EPI579006	A/chicken/Egypt/CLEVB-1_N00215/2014 (A/H5N1) segment 4 (HA)	3049.9	0.000000e+00	1686/1704 (98%)
EPI573252	A/Turkey/Egypt/AR235-S240NLQP/2014 (A/H5N1) segment 4 (HA)	3048.1	0.000000e+00	1684/1701 (99%)
EPI573250	A/chicken/Egypt/AR234-FAOF8NLQP/2014 (A/H5N1) segment 4 (HA)	3048.1	0.000000e+00	1684/1701 (99%)
EPI573244	A/chicken/Egypt/AR231-CA113NLQP/2014 (A/H5N1) segment 4 (HA)	3048.1	0.000000e+00	1684/1701 (99%)
EPI579784	A/chicken/Egypt/CLEVB-18_N00232/2015 (A/H5N1) segment 4 (HA)	3042.6	0.000000e+00	1685/1704 (98%)
EPI579783	A/chicken/Egypt/CLEVB-21_N00235/2015 (A/H5N1) segment 4 (HA)	3042.6	0.000000e+00	1685/1704 (98%)
EPI579782	A/chicken/Egypt/CLEVB-20_N00234/2015 (A/H5N1) segment 4 (HA)	3042.6	0.000000e+00	1685/1704 (98%)
EPI579520	A/chicken/Egypt/CLEVB-17_N00231/2015 (A/H5N1) segment 4 (HA)	3042.6	0.000000e+00	1685/1704 (98%)
EPI579325	A/chicken/Egypt/CLEVB-16_N00230/2014 (A/H5N1) segment 4 (HA)	3042.6	0.000000e+00	1685/1704 (98%)
EPI579324	A/chicken/Egypt/CLEVB-19_N00233/2015 (A/H5N1) segment 4 (HA)	3042.6	0.000000e+00	1685/1704 (98%)
EPI574132	A/Egypt/MOH-NRC-7305/2014 (A/H5N1) segment 4 (HA)	3042.6	0.000000e+00	1685/1704 (98%)
EPI557138	A/Quail/Egypt/BSU5514-AR2219/2014 (A/H5N1) segment 4 (HA)	3042.6	0.000000e+00	1683/1701 (98%)
EPI573248	A/chicken/Egypt/AR233-S283NLQP/2014 (A/H5N1) segment 4 (HA)	3038.9	0.000000e+00	1681/1699 (98%)
EPI642537	A/Egypt/682/2015 (A/H5N1) segment 4 (HA)	3031.5	0.000000e+00	1683/1704 (98%)
EPI573260	A/Duck/Egypt/AR236-A3NLQP/2015 (A/H5N1) segment 4 (HA)	3031.5	0.000000e+00	1681/1701 (98%)
EPI573246	A/Duck/Egypt/AR232-A13NLQP/2014 (A/H5N1) segment 4 (HA)	3020.4	0.000000e+00	1679/1701 (98%)
EPI584783	A/Egypt/MOH-NRC-8434/2014 (A/H5N1) segment 4 (HA)	3014.9	0.000000e+00	1680/1704 (98%)
EPI574125	A/Egypt/MOH-NRC-7271/2014 (A/H5N1) segment 4 (HA)	3014.9	0.000000e+00	1680/1704 (98%)
EPI550493	A/duck/Egypt/14VIR784-4-133AD/2013 (A/H5N1) segment 4 (HA)	3003.8	0.000000e+00	1678/1704 (98%)
EPI573322	A/chicken/Egypt/152RS/2015 (A/H5N1) segment 4 (HA)	3000.1	0.000000e+00	1657/1674 (98%)
EPI573315	A/duck/Egypt/BS-146RS-f6/2014 (A/H5N1) segment 4 (HA)	2996.4	0.000000e+00	1656/1673 (98%)
EPI573321	A/chicken/Egypt/153AF/2015 (A/H5N1) segment 4 (HA)	2994.5	0.000000e+00	1656/1674 (98%)
EPI573330	A/chicken/Egypt/1476CA/2014 (A/H5N1) segment 4 (HA)	2987.2	0.000000e+00	1655/1674 (98%)
EPI557194	A/Duck/Egypt/NLQP27SG-AR750/2013 (A/H5N1) segment 4 (HA)	2987.2	0.000000e+00	1673/1701 (98%)
EPI573328	A/chicken/Egypt/14168CA/2014 (A/H5N1) segment 4 (HA)	2983.5	0.000000e+00	1647/1663 (99%)
EPI573318	A/chicken/Egypt/1478CAL/2014 (A/H5N1) segment 4 (HA)	2983.5	0.000000e+00	1647/1663 (99%)
EPI573319	A/chicken/Egypt/152/2015 (A/H5N1) segment 4 (HA)	2981.6	0.000000e+00	1652/1671 (98%)
EPI557178	A/chicken/Egypt/NLQP33SD-AR748/2013 (A/H5N1) segment 4 (HA)	2981.6	0.000000e+00	1673/1702 (98%)
EPI500079	A/goose/Egypt/M7221D/2013 (A/H5N1) segment 4 (HA)	2976.1	0.000000e+00	1673/1704 (98%)
EPI500078	A/chicken/Egypt/M7217A/2013 (A/H5N1) segment 4 (HA)	2976.1	0.000000e+00	1673/1704 (98%)
EPI487342	A/chicken/Egypt/M7217B/2013 (A/H5N1) segment 4 (HA)	2976.1	0.000000e+00	1673/1704 (98%)
EPI500109	A/chicken/Egypt/Q5283C/2012 (A/H5N1) segment 4 (HA)	2972.4	0.000000e+00	1672/1704 (98%)
EPI504991	A/chicken/Egypt/BSU-BS-R24/2012 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1672/1704 (98%)
EPI504990	A/chicken/Egypt/BSU-BS-F27/2012 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1672/1704 (98%)
EPI373013	A/Egypt/N00166/2011 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1673/1705 (98%)
EPI348153	A/chicken/Egypt/11VIR4453-266/2010 (A/H5N1) segment 4 (HA)	2966.8	0.000000e+00	1671/1704 (98%)
EPI597822	A/duck/Egypt/1471SG/2014 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1672/1705 (98%)
EPI557218	A/chicken/Egypt/NLQP139V-AR753/2013 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1669/1701 (98%)
EPI340133	A/goose/Egypt/1117SF/2011 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1671/1704 (98%)
EPI603916	A/duck/Egypt/154FAOFL/2015 (A/H5N1) segment 4 (HA)	2961.3	0.000000e+00	1628/1640 (99%)
EPI597815	A/turkey/Egypt/1438S/2014 (A/H5N1) segment 4 (HA)	2959.5	0.000000e+00	1670/1704 (98%)
EPI500082	A/duck/Egypt/M7218B/2013 (A/H5N1) segment 4 (HA)	2959.5	0.000000e+00	1671/1705 (98%)
EPI340135	A/chicken/Egypt/1113/2011 (A/H5N1) segment 4 (HA)	2959.5	0.000000e+00	1670/1704 (98%)
EPI338733	A/duck/Egypt/M2583B/2010 (A/H5N1) segment 4 (HA)	2959.5	0.000000e+00	1671/1705 (98%)
EPI338732	A/duck/Egypt/M2583C/2010 (A/H5N1) segment 4 (HA)	2959.5	0.000000e+00	1671/1705 (98%)
EPI338616	A/duck/Egypt/M2583D/2010 (A/H5N1) segment 4 (HA)	2959.5	0.000000e+00	1671/1705 (98%)
EPI608783	A/turkey/Israel/188/2015 (A/H5N1) segment 4 (HA)	2953.9	0.000000e+00	1627/1641 (99%)
EPI608778	A/chicken/Israel/88/2015 (A/H5N1) segment 4 (HA)	2953.9	0.000000e+00	1627/1641 (99%)
EPI608777	A/turkey/Israel/107/2015 (A/H5N1) segment 4 (HA)	2953.9	0.000000e+00	1627/1641 (99%)
EPI600754	A/chicken/Egypt/N05832-CLEVB754/2011 (A/H5N1) segment 4 (HA)	2953.9	0.000000e+00	1667/1701 (98%)
EPI597812	A/chicken/Egypt/1422S/2014 (A/H5N1) segment 4 (HA)	2953.9	0.000000e+00	1669/1704 (97%)
EPI372907	A/Egypt/N7562/2011 (A/H5N1) segment 4 (HA)	2953.9	0.000000e+00	1670/1705 (97%)
EPI348152	A/chicken/Egypt/11VIR4453-268/2010 (A/H5N1) segment 4 (HA)	2953.9	0.000000e+00	1669/1704 (97%)
EPI340138	A/duck/Egypt/1125S/2011 (A/H5N1) segment 4 (HA)	2953.9	0.000000e+00	1669/1704 (97%)
EPI340101	A/chicken/Egypt/1112AF/2011 (A/H5N1) segment 4 (HA)	2953.9	0.000000e+00	1669/1704 (97%)
EPI340087	A/duck/Egypt/11193SF/2011 (A/H5N1) segment 4 (HA)	2953.9	0.000000e+00	1669/1704 (97%)
EPI340085	A/chicken/Egypt/1118AF/2011 (A/H5N1) segment 4 (HA)	2953.9	0.000000e+00	1669/1704 (97%)
EPI338615	A/duck/Egypt/Q2645C/2010 (A/H5N1) segment 4 (HA)	2953.9	0.000000e+00	1669/1704 (97%)
EPI608786	A/turkey/Israel/209/2015 (A/H5N1) segment 4 (HA)	2948.4	0.000000e+00	1626/1641 (99%)
EPI608780	A/turkey/Jenin/39/2015 (A/H5N1) segment 4 (HA)	2948.4	0.000000e+00	1626/1641 (99%)
EPI597825	A/turkey/Egypt/1414CAL/2014 (A/H5N1) segment 4 (HA)	2948.4	0.000000e+00	1668/1704 (97%)
EPI597823	A/turkey/Egypt/14125S/2014 (A/H5N1) segment 4 (HA)	2948.4	0.000000e+00	1668/1704 (97%)
EPI597818	A/chicken/Egypt/1461S/2014 (A/H5N1) segment 4 (HA)	2948.4	0.000000e+00	1668/1704 (97%)
EPI597816	A/duck/Egypt/1435CAS/2014 (A/H5N1) segment 4 (HA)	2948.4	0.000000e+00	1669/1705 (97%)
EPI557136	A/Turkey/Egypt/BSU5114-AR2218/2014 (A/H5N1) segment 4 (HA)	2948.4	0.000000e+00	1666/1701 (97%)
EPI373011	A/Egypt/N04288/2011 (A/H5N1) segment 4 (HA)	2948.4	0.000000e+00	1668/1704 (97%)
EPI372963	A/Egypt/N10621/2011 (A/H5N1) segment 4 (HA)	2948.4	0.000000e+00	1668/1704 (97%)
EPI340151	A/chicken/Egypt/10513S/2010 (A/H5N1) segment 4 (HA)	2948.4	0.000000e+00	1668/1704 (97%)
EPI340136	A/chicken/Egypt/1112/2011 (A/H5N1) segment 4 (HA)	2948.4	0.000000e+00	1668/1704 (97%)
EPI340104	A/chicken/Egypt/117AD/2011 (A/H5N1) segment 4 (HA)	2948.4	0.000000e+00	1668/1704 (97%)
EPI550507	A/duck/Egypt/14VIR784-8-1339S/2013 (A/H5N1) segment 4 (HA)	2946.5	0.000000e+00	1667/1703 (97%)
EPI348158	A/chicken/Egypt/11VIR4453-109/VRLCU/2011 (A/H5N1) segment 4 (HA)	2946.5	0.000000e+00	1667/1703 (97%)
EPI608781	A/turkey/Israel/274/2015 (A/H5N1) segment 4 (HA)	2944.7	0.000000e+00	1624/1639 (99%)
EPI373020	A/Egypt/N08932/2010 (A/H5N1) segment 4 (HA)	2944.7	0.000000e+00	1667/1704 (97%)
EPI348160	A/chicken/Egypt/11VIR4453-267/2010 (A/H5N1) segment 4 (HA)	2944.7	0.000000e+00	1666/1702 (97%)
EPI348157	A/chicken/Egypt/11VIR4453-15/VRLCU/2010 (A/H5N1) segment 4 (HA)	2944.7	0.000000e+00	1666/1702 (97%)
EPI348156	A/chicken/Egypt11VIR4453-269/2010 (A/H5N1) segment 4 (HA)	2944.7	0.000000e+00	1666/1703 (97%)
EPI608784	A/chicken/Israel/333/2015 (A/H5N1) segment 4 (HA)	2942.8	0.000000e+00	1625/1641 (99%)
EPI608782	A/turkey/Israel/174/2015 (A/H5N1) segment 4 (HA)	2942.8	0.000000e+00	1625/1641 (99%)
EPI608779	A/chicken/Qalqilya/53/2015 (A/H5N1) segment 4 (HA)	2942.8	0.000000e+00	1625/1641 (99%)
EPI597817	A/chicken/Egypt/1460S/2014 (A/H5N1) segment 4 (HA)	2942.8	0.000000e+00	1667/1704 (97%)
EPI597814	A/chicken/Egypt/1429S/2014 (A/H5N1) segment 4 (HA)	2942.8	0.000000e+00	1667/1704 (97%)
EPI397334	A/duck/Egypt/1111sg/2011 (A/H5N1) segment 4 (HA)	2942.8	0.000000e+00	1667/1704 (97%)

niman · October 27, 2015

LOCUS       KT792911                1750 bp    cRNA    linear   VRL 20-OCT-2015
DEFINITION  Influenza A virus (A/chicken/Gaza/870/2015(H5N1)) segment 4
            hemagglutinin (HA) gene, complete cds.
ACCESSION   KT792911
VERSION     KT792911.1  GI:938454688
KEYWORDS    .
SOURCE      Influenza A virus (A/chicken/Gaza/870/2015(H5N1))
  ORGANISM  Influenza A virus (A/chicken/Gaza/870/2015(H5N1))
            Viruses; ssRNA viruses; ssRNA negative-strand viruses;
            Orthomyxoviridae; Influenzavirus A.
REFERENCE   1  (bases 1 to 1750)
  AUTHORS   Shkoda,I., Lapin,K., Simanov,L., Alnakhal,R. and Lublin,A.
  TITLE     Highly pathogenic avian influenza A virus H5N1 isolated in Israel
            2015
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1750)
  AUTHORS   Shkoda,I., Lapin,K., Simanov,L., Alnakhal,R. and Lublin,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-SEP-2015) Division of Avian Diseases, Kimron
            Veterinari Institute, P.O.Box 12, Bet Dagan 50250, Israel
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: SeqMan DNAStar v. DNASTAR Lasergene 8
            Sequencing Technology :: IonTorrent
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers


     source          1..1750
                     /organism="Influenza A virus
                     (A/chicken/Gaza/870/2015(H5N1))"
                     /mol_type="viral cRNA"
                     /strain="A/chicken/Gaza/870/2015"
                     /serotype="H5N1"
                     /host="chicken"
                     /db_xref="taxon:1720088"
                     /segment="4"
                     /country="Israel"
                     /collection_date="24-Jun-2015"
                     /note="passage details: E1"


     gene            4..1707
                     /gene="HA"


     CDS             4..1707
                     /gene="HA"
                     /function="receptor binding and fusion protein"
                     /codon_start=1
                     /product="hemagglutinin"
                     /protein_id="ALJ33526.1"
                     /db_xref="GI:938454689"
                     /translation="MEKMVLLLAIASIVKSDQICIGYHANNSTEQVDTIMEKNVTVTH
                     AQDILEKTHNGKLCNLDGVKPLILRDCSVAGWLLGNPMCDEFLNVPEWSYIVEKINPA
                     NDLCYPGNFNDYEELKHLLSRINHFEKIQIIPKDSWSDHEASGVSSACPYQGRSSFFR
                     NVVWLTKKNDAYPTIKKSYNNTNQEDLLVLWGIHHPNDAAEQTRLYQNPTTYISVGTS
                     TLNQRLVPKIATRSKVNGQSGRMEFFWTILKSNDAINFESNGNFIAPENAYKIVKKGD
                     STIMKSELEYSNCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNRLVLATGLRN
                     SPQGEKRRKKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQRAIDG
                     VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE
                     RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHRCDNECMESVRNGTYDYPQYS
                     EEARLKREEISGVKLESIGTYQILSIYSTVASSLALAIMVAGLSLWMCSNGSLQCRIC
                     I"


     sig_peptide     4..51
                     /gene="HA"


     mat_peptide     52..1038
                     /gene="HA"
                     /product="HA1"


     mat_peptide     1039..1704
                     /gene="HA"
                     /product="HA2"
ORIGIN      
        1 aaaatggaga aaatggtact tcttcttgca atagccagta ttgtcaaaag tgatcagatt
       61 tgcattggtt accatgcaaa caactcgaca gagcaggttg acacaataat ggaaaagaac
      121 gtcactgtta cacacgccca agacatactg gaaaagacac acaacgggaa actctgcaat
      181 ctagatggag tgaagcctct cattttaaga gattgtagtg tagctggatg gctcctcggg
      241 aacccaatgt gcgatgagtt cctcaatgtg ccggaatggt cttacatagt ggagaaaatc
      301 aatccagcca atgacctctg ttatccaggg aatttcaacg actatgaaga actgaaacac
      361 ctattgagca gaataaacca ttttgagaaa attcagatca ttcccaaaga ttcttggtca
      421 gatcatgaag cctcaggagt gagctcagca tgcccatacc aaggaagatc ctcctttttt
      481 agaaatgttg tatggcttac caaaaagaac gatgcatacc caacaataaa gaaaagttac
      541 aataatacta accaagaaga tcttttggta ctatggggga ttcaccatcc aaatgatgct
      601 gcagagcaga caaggcttta tcaaaaccca actacctata tctccgttgg gacatcaaca
      661 ctaaaccaga gattggtacc caaaatagct actagatcta aggtaaacgg gcaaagtgga
      721 aggatggagt tcttttggac aattttaaaa tcgaatgatg caataaactt tgagagcaat
      781 ggaaacttca ttgctccaga aaatgcatac aaaattgtca agaaaggaga ttcaacaatt
      841 atgaaaagtg agttggaata tagtaactgc aacaccaagt gtcagactcc aataggggcg
      901 ataaactcca gtatgccatt ccacaacatc caccctctca ccatcgggga atgccccaaa
      961 tatgtgaaat caaacagatt agtccttgct actgggctca ggaatagccc tcaaggagag
     1021 aaaagaagaa aaaagagagg actattcgga gccatagcag gttttataga gggaggatgg
     1081 cagggaatgg tagatggttg gtatgggtac caccatagca acgagcaggg gagtgggtac
     1141 gctgcagaca aagaatccac tcaaagggct atagatggag tcaccaataa ggtcaattca
     1201 atcattgaca aaatgaacac ccagtttgag gctgttggaa gggaatttaa taacttagaa
     1261 aggagaatag aaaatttgaa caagaagatg gaagacggat tcctagatgt ctggacctat
     1321 aatgctgaac ttctggttct catggaaaat gagagaactc tagactttca tgactcaaat
     1381 gtcaagaatc tttatgacaa ggtccgacta cagcttaggg ataatgcaaa ggagcttggt
     1441 aacggctgtt tcgagttcta tcacagatgt gataatgaat gtatggaaag tgtaagaaac
     1501 ggaacgtatg actatcctca atattcagaa gaagcaagat taaaaagaga ggaaataagt
     1561 ggagtaaaat tggagtcaat aggaacttac caaatactgt caatttattc aacagtggcg
     1621 agctccctag cactggcaat catggtggct ggtctatctt tatggatgtg ctccaatgga
     1681 tcgctacaat gcagaatttg catttaaatt tgtgagttca aattgtagtt aaaaacaccc
     1741 ttgtttctac

Descriptions

Segment-ID	Name	Score	E-Value	Identity
EPI669120	A/chicken/Gaza/870/2015 (A/H5N1) segment 4 (HA)	3147.8	0.000000e+00	1704/1704 (100%)
EPI669125	A/chicken/Gaza/797/2015 (A/H5N1) segment 4 (HA)	3136.7	0.000000e+00	1702/1704 (99%)
EPI669126	A/duck/Gaza/872/2015 (A/H5N1) segment 4 (HA)	3131.2	0.000000e+00	1701/1704 (99%)
EPI669123	A/chicken/Gaza/803/2015 (A/H5N1) segment 4 (HA)	3131.2	0.000000e+00	1701/1704 (99%)
EPI669122	A/duck/Gaza/829/2015 (A/H5N1) segment 4 (HA)	3131.2	0.000000e+00	1701/1704 (99%)
EPI669121	A/chicken/Gaza/869/2015 (A/H5N1) segment 4 (HA)	3131.2	0.000000e+00	1701/1704 (99%)
EPI669124	A/chicken/Gaza/799/2015 (A/H5N1) segment 4 (HA)	3125.7	0.000000e+00	1700/1704 (99%)
EPI669127	A/duck/Gaza/552/2015 (A/H5N1) segment 4 (HA)	3114.6	0.000000e+00	1698/1704 (99%)
EPI669119	A/chicken/Gaza/876/2015 (A/H5N1) segment 4 (HA)	3114.6	0.000000e+00	1698/1704 (99%)
EPI579781	A/duck/Egypt/CLEVB-25_N00239/2015 (A/H5N1) segment 4 (HA)	3103.5	0.000000e+00	1696/1704 (99%)
EPI579780	A/duck/Egypt/CLEVB-24_N00238/2015 (A/H5N1) segment 4 (HA)	3103.5	0.000000e+00	1696/1704 (99%)
EPI669130	A/turkey/Israel/633/2015 (A/H5N1) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI669131	A/turkey/Israel/14/2015 (A/H5N1) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI584778	A/chicken/Egypt/A10351A/2014 (A/H5N1) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI669129	A/chicken/Qatanna/468/2015 (A/H5N1) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI669128	A/turkey/Israel/658/2015 (A/H5N1) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI573268	A/Turkey/Egypt/AR238-SD177NLQP/2014 (A/H5N1) segment 4 (HA)	3064.7	0.000000e+00	1687/1701 (99%)
EPI579006	A/chicken/Egypt/CLEVB-1_N00215/2014 (A/H5N1) segment 4 (HA)	3061.0	0.000000e+00	1688/1704 (99%)
EPI573252	A/Turkey/Egypt/AR235-S240NLQP/2014 (A/H5N1) segment 4 (HA)	3059.2	0.000000e+00	1686/1701 (99%)
EPI573250	A/chicken/Egypt/AR234-FAOF8NLQP/2014 (A/H5N1) segment 4 (HA)	3059.2	0.000000e+00	1686/1701 (99%)
EPI573244	A/chicken/Egypt/AR231-CA113NLQP/2014 (A/H5N1) segment 4 (HA)	3059.2	0.000000e+00	1686/1701 (99%)
EPI579784	A/chicken/Egypt/CLEVB-18_N00232/2015 (A/H5N1) segment 4 (HA)	3053.6	0.000000e+00	1687/1704 (99%)
EPI579783	A/chicken/Egypt/CLEVB-21_N00235/2015 (A/H5N1) segment 4 (HA)	3053.6	0.000000e+00	1687/1704 (99%)
EPI579782	A/chicken/Egypt/CLEVB-20_N00234/2015 (A/H5N1) segment 4 (HA)	3053.6	0.000000e+00	1687/1704 (99%)
EPI579520	A/chicken/Egypt/CLEVB-17_N00231/2015 (A/H5N1) segment 4 (HA)	3053.6	0.000000e+00	1687/1704 (99%)
EPI579325	A/chicken/Egypt/CLEVB-16_N00230/2014 (A/H5N1) segment 4 (HA)	3053.6	0.000000e+00	1687/1704 (99%)
EPI579324	A/chicken/Egypt/CLEVB-19_N00233/2015 (A/H5N1) segment 4 (HA)	3053.6	0.000000e+00	1687/1704 (99%)
EPI574132	A/Egypt/MOH-NRC-7305/2014 (A/H5N1) segment 4 (HA)	3053.6	0.000000e+00	1687/1704 (99%)
EPI557138	A/Quail/Egypt/BSU5514-AR2219/2014 (A/H5N1) segment 4 (HA)	3053.6	0.000000e+00	1685/1701 (99%)
EPI573248	A/chicken/Egypt/AR233-S283NLQP/2014 (A/H5N1) segment 4 (HA)	3049.9	0.000000e+00	1683/1699 (99%)
EPI642537	A/Egypt/682/2015 (A/H5N1) segment 4 (HA)	3042.6	0.000000e+00	1685/1704 (98%)
EPI573260	A/Duck/Egypt/AR236-A3NLQP/2015 (A/H5N1) segment 4 (HA)	3042.6	0.000000e+00	1683/1701 (98%)
EPI573246	A/Duck/Egypt/AR232-A13NLQP/2014 (A/H5N1) segment 4 (HA)	3031.5	0.000000e+00	1681/1701 (98%)
EPI584783	A/Egypt/MOH-NRC-8434/2014 (A/H5N1) segment 4 (HA)	3025.9	0.000000e+00	1682/1704 (98%)
EPI574125	A/Egypt/MOH-NRC-7271/2014 (A/H5N1) segment 4 (HA)	3025.9	0.000000e+00	1682/1704 (98%)
EPI550493	A/duck/Egypt/14VIR784-4-133AD/2013 (A/H5N1) segment 4 (HA)	3014.9	0.000000e+00	1680/1704 (98%)
EPI573322	A/chicken/Egypt/152RS/2015 (A/H5N1) segment 4 (HA)	3011.2	0.000000e+00	1659/1674 (99%)
EPI573315	A/duck/Egypt/BS-146RS-f6/2014 (A/H5N1) segment 4 (HA)	3007.5	0.000000e+00	1658/1673 (99%)
EPI573321	A/chicken/Egypt/153AF/2015 (A/H5N1) segment 4 (HA)	3005.6	0.000000e+00	1658/1674 (99%)
EPI573330	A/chicken/Egypt/1476CA/2014 (A/H5N1) segment 4 (HA)	2998.2	0.000000e+00	1657/1674 (98%)
EPI557194	A/Duck/Egypt/NLQP27SG-AR750/2013 (A/H5N1) segment 4 (HA)	2998.2	0.000000e+00	1675/1701 (98%)
EPI573328	A/chicken/Egypt/14168CA/2014 (A/H5N1) segment 4 (HA)	2994.5	0.000000e+00	1645/1657 (99%)
EPI573318	A/chicken/Egypt/1478CAL/2014 (A/H5N1) segment 4 (HA)	2994.5	0.000000e+00	1649/1663 (99%)
EPI573319	A/chicken/Egypt/152/2015 (A/H5N1) segment 4 (HA)	2992.7	0.000000e+00	1654/1671 (98%)
EPI557178	A/chicken/Egypt/NLQP33SD-AR748/2013 (A/H5N1) segment 4 (HA)	2992.7	0.000000e+00	1675/1702 (98%)
EPI500079	A/goose/Egypt/M7221D/2013 (A/H5N1) segment 4 (HA)	2987.2	0.000000e+00	1675/1704 (98%)
EPI500078	A/chicken/Egypt/M7217A/2013 (A/H5N1) segment 4 (HA)	2987.2	0.000000e+00	1675/1704 (98%)
EPI487342	A/chicken/Egypt/M7217B/2013 (A/H5N1) segment 4 (HA)	2987.2	0.000000e+00	1675/1704 (98%)
EPI500109	A/chicken/Egypt/Q5283C/2012 (A/H5N1) segment 4 (HA)	2983.5	0.000000e+00	1674/1704 (98%)
EPI504991	A/chicken/Egypt/BSU-BS-R24/2012 (A/H5N1) segment 4 (HA)	2981.6	0.000000e+00	1674/1704 (98%)
EPI504990	A/chicken/Egypt/BSU-BS-F27/2012 (A/H5N1) segment 4 (HA)	2981.6	0.000000e+00	1674/1704 (98%)
EPI373013	A/Egypt/N00166/2011 (A/H5N1) segment 4 (HA)	2981.6	0.000000e+00	1675/1705 (98%)
EPI348153	A/chicken/Egypt/11VIR4453-266/2010 (A/H5N1) segment 4 (HA)	2977.9	0.000000e+00	1673/1704 (98%)
EPI608783	A/turkey/Israel/188/2015 (A/H5N1) segment 4 (HA)	2976.1	0.000000e+00	1631/1641 (99%)
EPI608778	A/chicken/Israel/88/2015 (A/H5N1) segment 4 (HA)	2976.1	0.000000e+00	1631/1641 (99%)
EPI608777	A/turkey/Israel/107/2015 (A/H5N1) segment 4 (HA)	2976.1	0.000000e+00	1631/1641 (99%)
EPI597822	A/duck/Egypt/1471SG/2014 (A/H5N1) segment 4 (HA)	2976.1	0.000000e+00	1674/1705 (98%)
EPI557218	A/chicken/Egypt/NLQP139V-AR753/2013 (A/H5N1) segment 4 (HA)	2976.1	0.000000e+00	1671/1701 (98%)
EPI340133	A/goose/Egypt/1117SF/2011 (A/H5N1) segment 4 (HA)	2976.1	0.000000e+00	1673/1704 (98%)
EPI603916	A/duck/Egypt/154FAOFL/2015 (A/H5N1) segment 4 (HA)	2972.4	0.000000e+00	1630/1640 (99%)
EPI608786	A/turkey/Israel/209/2015 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1630/1641 (99%)
EPI608780	A/turkey/Jenin/39/2015 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1630/1641 (99%)
EPI597815	A/turkey/Egypt/1438S/2014 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1672/1704 (98%)
EPI500082	A/duck/Egypt/M7218B/2013 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1673/1705 (98%)
EPI340135	A/chicken/Egypt/1113/2011 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1672/1704 (98%)
EPI338733	A/duck/Egypt/M2583B/2010 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1673/1705 (98%)
EPI338732	A/duck/Egypt/M2583C/2010 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1673/1705 (98%)
EPI338616	A/duck/Egypt/M2583D/2010 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1673/1705 (98%)
EPI608781	A/turkey/Israel/274/2015 (A/H5N1) segment 4 (HA)	2966.8	0.000000e+00	1628/1639 (99%)
EPI608784	A/chicken/Israel/333/2015 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1629/1641 (99%)
EPI608782	A/turkey/Israel/174/2015 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1629/1641 (99%)
EPI608779	A/chicken/Qalqilya/53/2015 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1629/1641 (99%)
EPI600754	A/chicken/Egypt/N05832-CLEVB754/2011 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1669/1701 (98%)
EPI597812	A/chicken/Egypt/1422S/2014 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1671/1704 (98%)
EPI372907	A/Egypt/N7562/2011 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1672/1705 (98%)
EPI348152	A/chicken/Egypt/11VIR4453-268/2010 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1671/1704 (98%)
EPI340138	A/duck/Egypt/1125S/2011 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1671/1704 (98%)
EPI340101	A/chicken/Egypt/1112AF/2011 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1671/1704 (98%)
EPI340087	A/duck/Egypt/11193SF/2011 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1671/1704 (98%)
EPI340085	A/chicken/Egypt/1118AF/2011 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1671/1704 (98%)
EPI338615	A/duck/Egypt/Q2645C/2010 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1671/1704 (98%)
EPI608787	A/spur-winged lapwing/Israel/101/2015 (A/H5N1) segment 4 (HA)	2959.5	0.000000e+00	1628/1641 (99%)
EPI597825	A/turkey/Egypt/1414CAL/2014 (A/H5N1) segment 4 (HA)	2959.5	0.000000e+00	1670/1704 (98%)
EPI597823	A/turkey/Egypt/14125S/2014 (A/H5N1) segment 4 (HA)	2959.5	0.000000e+00	1670/1704 (98%)
EPI597818	A/chicken/Egypt/1461S/2014 (A/H5N1) segment 4 (HA)	2959.5	0.000000e+00	1670/1704 (98%)
EPI597816	A/duck/Egypt/1435CAS/2014 (A/H5N1) segment 4 (HA)	2959.5	0.000000e+00	1671/1705 (98%)
EPI557136	A/Turkey/Egypt/BSU5114-AR2218/2014 (A/H5N1) segment 4 (HA)	2959.5	0.000000e+00	1668/1701 (98%)
EPI373011	A/Egypt/N04288/2011 (A/H5N1) segment 4 (HA)	2959.5	0.000000e+00	1670/1704 (98%)
EPI372963	A/Egypt/N10621/2011 (A/H5N1) segment 4 (HA)	2959.5	0.000000e+00	1670/1704 (98%)
EPI340151	A/chicken/Egypt/10513S/2010 (A/H5N1) segment 4 (HA)	2959.5	0.000000e+00	1670/1704 (98%)
EPI340136	A/chicken/Egypt/1112/2011 (A/H5N1) segment 4 (HA)	2959.5	0.000000e+00	1670/1704 (98%)
EPI340104	A/chicken/Egypt/117AD/2011 (A/H5N1) segment 4 (HA)	2959.5	0.000000e+00	1670/1704 (98%)
EPI550507	A/duck/Egypt/14VIR784-8-1339S/2013 (A/H5N1) segment 4 (HA)	2957.6	0.000000e+00	1669/1703 (98%)
EPI348158	A/chicken/Egypt/11VIR4453-109/VRLCU/2011 (A/H5N1) segment 4 (HA)	2957.6	0.000000e+00	1669/1703 (98%)
EPI373020	A/Egypt/N08932/2010 (A/H5N1) segment 4 (HA)	2955.8	0.000000e+00	1669/1704 (97%)
EPI348160	A/chicken/Egypt/11VIR4453-267/2010 (A/H5N1) segment 4 (HA)	2955.8	0.000000e+00	1668/1702 (98%)
EPI348157	A/chicken/Egypt/11VIR4453-15/VRLCU/2010 (A/H5N1) segment 4 (HA)	2955.8	0.000000e+00	1668/1702 (98%)
EPI348156	A/chicken/Egypt11VIR4453-269/2010 (A/H5N1) segment 4 (HA)	2955.8	0.000000e+00	1668/1703 (97%)
EPI597817	A/chicken/Egypt/1460S/2014 (A/H5N1) segment 4 (HA)	2953.9	0.000000e+00	1669/1704 (97%)
EPI597814	A/chicken/Egypt/1429S/2014 (A/H5N1) segment 4 (HA)	2953.9	0.000000e+00	1669/1704 (97%)

niman · October 27, 2015

LOCUS       KT792912                1725 bp    cRNA    linear   VRL 20-OCT-2015
DEFINITION  Influenza A virus (A/chicken/Gaza/869/2015(H5N1)) segment 4
            hemagglutinin (HA) gene, complete cds.
ACCESSION   KT792912
VERSION     KT792912.1  GI:938454690
KEYWORDS    .
SOURCE      Influenza A virus (A/chicken/Gaza/869/2015(H5N1))
  ORGANISM  Influenza A virus (A/chicken/Gaza/869/2015(H5N1))
            Viruses; ssRNA viruses; ssRNA negative-strand viruses;
            Orthomyxoviridae; Influenzavirus A.
REFERENCE   1  (bases 1 to 1725)
  AUTHORS   Shkoda,I., Lapin,K., Simanov,L., Alnakhal,R. and Lublin,A.
  TITLE     Highly pathogenic avian influenza A virus H5N1 isolated in Israel
            2015
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1725)
  AUTHORS   Shkoda,I., Lapin,K., Simanov,L., Alnakhal,R. and Lublin,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-SEP-2015) Division of Avian Diseases, Kimron
            Veterinari Institute, P.O.Box 12, Bet Dagan 50250, Israel
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: SeqMan DNAStar v. DNASTAR Lasergene 8
            Sequencing Technology :: IonTorrent
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers


     source          1..1725
                     /organism="Influenza A virus
                     (A/chicken/Gaza/869/2015(H5N1))"
                     /mol_type="viral cRNA"
                     /strain="A/chicken/Gaza/869/2015"
                     /serotype="H5N1"
                     /host="chicken"
                     /db_xref="taxon:1720087"
                     /segment="4"
                     /country="Israel"
                     /collection_date="27-Jun-2015"
                     /note="passage details: E1"


     gene            4..1707
                     /gene="HA"


     CDS             4..1707
                     /gene="HA"
                     /function="receptor binding and fusion protein"
                     /codon_start=1
                     /product="hemagglutinin"
                     /protein_id="ALJ33527.1"
                     /db_xref="GI:938454691"
                     /translation="MEKIVLLLAIASIVKSDQICIGYHANNSTEQVDTIMEKNVTVTH
                     AQDILEKTHNGKLCNLDGVKPLILRDCSVAGWLLGNPMCDEFLNVPEWSYIVEKINPA
                     NDLCYPGNFNDYEELKHLLSRINHFEKIQIIPKDSWSDHEASGVSSACPYQGRSSFFR
                     NVVWLTKKNDAYPTIKKSYNNTNQEDLLVLWGIHHPNDAAEQTRLYQNPTTYISVGTS
                     TLNQRLVPKIATRSKVNGQSGRMEFFWTILKSNDAINFESNGNFIAPENAYKIVKKGD
                     STIMKSELEYSNCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNRLVLATGLRN
                     SPQGEKRRKKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQRAIDG
                     VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE
                     RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHRCDNECMESVRNGTYDYPQYS
                     EEARLKREEISGVKLESIGTYQILSIYSTVASSLALAIMVAGLSLWMCSNGSLQCRIC
                     I"


     sig_peptide     4..51
                     /gene="HA"


     mat_peptide     52..1038
                     /gene="HA"
                     /product="HA1"


     mat_peptide     1039..1704
                     /gene="HA"
                     /product="HA2"
ORIGIN      
        1 aaaatggaga aaatagtgct tcttcttgca atagccagta ttgtcaaaag tgatcagatt
       61 tgcattggtt accatgcaaa caactcgaca gagcaggttg acacaataat ggaaaagaac
      121 gtcactgtta cacacgccca agacatactg gaaaagacac acaacgggaa actctgcaat
      181 ctagatggag tgaagcctct cattttaaga gattgtagtg tagctggatg gctcctcggg
      241 aacccaatgt gcgatgagtt cctcaatgtg ccggagtggt cttacatagt ggagaaaatc
      301 aatccagcca atgacctctg ttatccaggg aatttcaacg actatgaaga actgaaacac
      361 ctattgagca gaataaacca ttttgagaaa attcagatca ttcccaaaga ttcttggtca
      421 gatcatgaag cctcaggagt gagctcagca tgcccatacc aaggaagatc ctcctttttt
      481 agaaatgttg tatggcttac caaaaagaac gatgcatacc caacaataaa gaaaagttac
      541 aataatacta accaagaaga tcttttggta ctatggggga ttcaccatcc aaatgatgct
      601 gcagagcaga caaggcttta tcaaaaccca actacctata tctccgttgg gacatcaaca
      661 ctaaaccaga gattggtacc caaaatagct actagatcta aggtaaacgg gcaaagtgga
      721 aggatggagt tcttttggac aattttaaaa tcgaatgatg caataaactt tgagagcaat
      781 ggaaacttca ttgctccaga aaatgcatac aaaattgtca agaaaggaga ttcaacaatt
      841 atgaaaagtg agttggaata tagtaactgc aacaccaagt gtcagactcc aataggggcg
      901 ataaactcca gtatgccatt ccacaacatc caccctctca ccatcgggga atgccccaaa
      961 tatgtgaaat caaacagatt agtccttgct actgggctca ggaatagccc tcaaggagag
     1021 aaaagaagaa aaaagagagg actattcgga gccatagcag gttttataga gggaggatgg
     1081 cagggaatgg tagatggttg gtatgggtac caccatagca acgagcaggg gagtgggtac
     1141 gctgcagaca aagaatccac tcaaagggct atagatggag tcaccaataa ggtcaattca
     1201 atcattgaca aaatgaacac ccagtttgag gctgttggaa gggaatttaa taacttagaa
     1261 aggagaatag aaaatttgaa caagaagatg gaagacggat tcctagatgt ctggacctat
     1321 aatgctgaac ttctggttct catggaaaat gagagaactc tagactttca tgactcaaat
     1381 gtcaagaatc tttatgacaa ggtccgacta cagcttaggg ataatgcaaa ggagcttggt
     1441 aacggctgtt tcgagttcta tcacagatgt gataatgaat gtatggaaag tgtaagaaac
     1501 ggaacgtatg actatcctca atattcagaa gaagcaagat taaaaagaga ggaaataagt
     1561 ggagtaaaat tggagtcaat aggaacttac caaatactgt caatttattc aacagtggcg
     1621 agctccctag cactggcaat catggtggct ggtctatctt tatggatgtg ctccaatgga
     1681 tcgctacaat gcagaatttg catttaaatt tgtgagttca aattg

Descriptions

Segment-ID	Name	Score	E-Value	Identity
EPI669122	A/duck/Gaza/829/2015 (A/H5N1) segment 4 (HA)	3147.8	0.000000e+00	1704/1704 (100%)
EPI669121	A/chicken/Gaza/869/2015 (A/H5N1) segment 4 (HA)	3147.8	0.000000e+00	1704/1704 (100%)
EPI669125	A/chicken/Gaza/797/2015 (A/H5N1) segment 4 (HA)	3142.3	0.000000e+00	1703/1704 (99%)
EPI669126	A/duck/Gaza/872/2015 (A/H5N1) segment 4 (HA)	3136.7	0.000000e+00	1702/1704 (99%)
EPI669123	A/chicken/Gaza/803/2015 (A/H5N1) segment 4 (HA)	3136.7	0.000000e+00	1702/1704 (99%)
EPI669124	A/chicken/Gaza/799/2015 (A/H5N1) segment 4 (HA)	3131.2	0.000000e+00	1701/1704 (99%)
EPI669120	A/chicken/Gaza/870/2015 (A/H5N1) segment 4 (HA)	3131.2	0.000000e+00	1701/1704 (99%)
EPI669127	A/duck/Gaza/552/2015 (A/H5N1) segment 4 (HA)	3120.1	0.000000e+00	1699/1704 (99%)
EPI669119	A/chicken/Gaza/876/2015 (A/H5N1) segment 4 (HA)	3120.1	0.000000e+00	1699/1704 (99%)
EPI579781	A/duck/Egypt/CLEVB-25_N00239/2015 (A/H5N1) segment 4 (HA)	3109.0	0.000000e+00	1697/1704 (99%)
EPI579780	A/duck/Egypt/CLEVB-24_N00238/2015 (A/H5N1) segment 4 (HA)	3109.0	0.000000e+00	1697/1704 (99%)
EPI669130	A/turkey/Israel/633/2015 (A/H5N1) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI669131	A/turkey/Israel/14/2015 (A/H5N1) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI584778	A/chicken/Egypt/A10351A/2014 (A/H5N1) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI669129	A/chicken/Qatanna/468/2015 (A/H5N1) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI669128	A/turkey/Israel/658/2015 (A/H5N1) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI573268	A/Turkey/Egypt/AR238-SD177NLQP/2014 (A/H5N1) segment 4 (HA)	3070.3	0.000000e+00	1688/1701 (99%)
EPI579006	A/chicken/Egypt/CLEVB-1_N00215/2014 (A/H5N1) segment 4 (HA)	3066.6	0.000000e+00	1689/1704 (99%)
EPI573252	A/Turkey/Egypt/AR235-S240NLQP/2014 (A/H5N1) segment 4 (HA)	3064.7	0.000000e+00	1687/1701 (99%)
EPI573250	A/chicken/Egypt/AR234-FAOF8NLQP/2014 (A/H5N1) segment 4 (HA)	3064.7	0.000000e+00	1687/1701 (99%)
EPI573244	A/chicken/Egypt/AR231-CA113NLQP/2014 (A/H5N1) segment 4 (HA)	3064.7	0.000000e+00	1687/1701 (99%)
EPI579784	A/chicken/Egypt/CLEVB-18_N00232/2015 (A/H5N1) segment 4 (HA)	3059.2	0.000000e+00	1688/1704 (99%)
EPI579783	A/chicken/Egypt/CLEVB-21_N00235/2015 (A/H5N1) segment 4 (HA)	3059.2	0.000000e+00	1688/1704 (99%)
EPI579782	A/chicken/Egypt/CLEVB-20_N00234/2015 (A/H5N1) segment 4 (HA)	3059.2	0.000000e+00	1688/1704 (99%)
EPI579520	A/chicken/Egypt/CLEVB-17_N00231/2015 (A/H5N1) segment 4 (HA)	3059.2	0.000000e+00	1688/1704 (99%)
EPI579325	A/chicken/Egypt/CLEVB-16_N00230/2014 (A/H5N1) segment 4 (HA)	3059.2	0.000000e+00	1688/1704 (99%)
EPI579324	A/chicken/Egypt/CLEVB-19_N00233/2015 (A/H5N1) segment 4 (HA)	3059.2	0.000000e+00	1688/1704 (99%)
EPI574132	A/Egypt/MOH-NRC-7305/2014 (A/H5N1) segment 4 (HA)	3059.2	0.000000e+00	1688/1704 (99%)
EPI557138	A/Quail/Egypt/BSU5514-AR2219/2014 (A/H5N1) segment 4 (HA)	3059.2	0.000000e+00	1686/1701 (99%)
EPI573248	A/chicken/Egypt/AR233-S283NLQP/2014 (A/H5N1) segment 4 (HA)	3055.5	0.000000e+00	1684/1699 (99%)
EPI642537	A/Egypt/682/2015 (A/H5N1) segment 4 (HA)	3048.1	0.000000e+00	1686/1704 (98%)
EPI573260	A/Duck/Egypt/AR236-A3NLQP/2015 (A/H5N1) segment 4 (HA)	3048.1	0.000000e+00	1684/1701 (99%)
EPI573246	A/Duck/Egypt/AR232-A13NLQP/2014 (A/H5N1) segment 4 (HA)	3037.0	0.000000e+00	1682/1701 (98%)
EPI584783	A/Egypt/MOH-NRC-8434/2014 (A/H5N1) segment 4 (HA)	3031.5	0.000000e+00	1683/1704 (98%)
EPI574125	A/Egypt/MOH-NRC-7271/2014 (A/H5N1) segment 4 (HA)	3031.5	0.000000e+00	1683/1704 (98%)
EPI550493	A/duck/Egypt/14VIR784-4-133AD/2013 (A/H5N1) segment 4 (HA)	3020.4	0.000000e+00	1681/1704 (98%)
EPI573322	A/chicken/Egypt/152RS/2015 (A/H5N1) segment 4 (HA)	3016.7	0.000000e+00	1660/1674 (99%)
EPI573315	A/duck/Egypt/BS-146RS-f6/2014 (A/H5N1) segment 4 (HA)	3013.0	0.000000e+00	1659/1673 (99%)
EPI573321	A/chicken/Egypt/153AF/2015 (A/H5N1) segment 4 (HA)	3011.2	0.000000e+00	1659/1674 (99%)
EPI573330	A/chicken/Egypt/1476CA/2014 (A/H5N1) segment 4 (HA)	3003.8	0.000000e+00	1658/1674 (99%)
EPI557194	A/Duck/Egypt/NLQP27SG-AR750/2013 (A/H5N1) segment 4 (HA)	3003.8	0.000000e+00	1676/1701 (98%)
EPI573328	A/chicken/Egypt/14168CA/2014 (A/H5N1) segment 4 (HA)	3000.1	0.000000e+00	1650/1663 (99%)
EPI573318	A/chicken/Egypt/1478CAL/2014 (A/H5N1) segment 4 (HA)	3000.1	0.000000e+00	1650/1663 (99%)
EPI573319	A/chicken/Egypt/152/2015 (A/H5N1) segment 4 (HA)	2998.2	0.000000e+00	1655/1671 (99%)
EPI557178	A/chicken/Egypt/NLQP33SD-AR748/2013 (A/H5N1) segment 4 (HA)	2998.2	0.000000e+00	1676/1702 (98%)
EPI500079	A/goose/Egypt/M7221D/2013 (A/H5N1) segment 4 (HA)	2992.7	0.000000e+00	1676/1704 (98%)
EPI500078	A/chicken/Egypt/M7217A/2013 (A/H5N1) segment 4 (HA)	2992.7	0.000000e+00	1676/1704 (98%)
EPI487342	A/chicken/Egypt/M7217B/2013 (A/H5N1) segment 4 (HA)	2992.7	0.000000e+00	1676/1704 (98%)
EPI500109	A/chicken/Egypt/Q5283C/2012 (A/H5N1) segment 4 (HA)	2989.0	0.000000e+00	1675/1704 (98%)
EPI504991	A/chicken/Egypt/BSU-BS-R24/2012 (A/H5N1) segment 4 (HA)	2987.2	0.000000e+00	1675/1704 (98%)
EPI504990	A/chicken/Egypt/BSU-BS-F27/2012 (A/H5N1) segment 4 (HA)	2987.2	0.000000e+00	1675/1704 (98%)
EPI373013	A/Egypt/N00166/2011 (A/H5N1) segment 4 (HA)	2987.2	0.000000e+00	1676/1705 (98%)
EPI348153	A/chicken/Egypt/11VIR4453-266/2010 (A/H5N1) segment 4 (HA)	2983.5	0.000000e+00	1674/1704 (98%)
EPI597822	A/duck/Egypt/1471SG/2014 (A/H5N1) segment 4 (HA)	2981.6	0.000000e+00	1675/1705 (98%)
EPI557218	A/chicken/Egypt/NLQP139V-AR753/2013 (A/H5N1) segment 4 (HA)	2981.6	0.000000e+00	1672/1701 (98%)
EPI340133	A/goose/Egypt/1117SF/2011 (A/H5N1) segment 4 (HA)	2981.6	0.000000e+00	1674/1704 (98%)
EPI603916	A/duck/Egypt/154FAOFL/2015 (A/H5N1) segment 4 (HA)	2977.9	0.000000e+00	1631/1640 (99%)
EPI597815	A/turkey/Egypt/1438S/2014 (A/H5N1) segment 4 (HA)	2976.1	0.000000e+00	1673/1704 (98%)
EPI500082	A/duck/Egypt/M7218B/2013 (A/H5N1) segment 4 (HA)	2976.1	0.000000e+00	1674/1705 (98%)
EPI340135	A/chicken/Egypt/1113/2011 (A/H5N1) segment 4 (HA)	2976.1	0.000000e+00	1673/1704 (98%)
EPI338733	A/duck/Egypt/M2583B/2010 (A/H5N1) segment 4 (HA)	2976.1	0.000000e+00	1674/1705 (98%)
EPI338732	A/duck/Egypt/M2583C/2010 (A/H5N1) segment 4 (HA)	2976.1	0.000000e+00	1674/1705 (98%)
EPI338616	A/duck/Egypt/M2583D/2010 (A/H5N1) segment 4 (HA)	2976.1	0.000000e+00	1674/1705 (98%)
EPI608783	A/turkey/Israel/188/2015 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1630/1641 (99%)
EPI608778	A/chicken/Israel/88/2015 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1630/1641 (99%)
EPI608777	A/turkey/Israel/107/2015 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1630/1641 (99%)
EPI600754	A/chicken/Egypt/N05832-CLEVB754/2011 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1670/1701 (98%)
EPI597812	A/chicken/Egypt/1422S/2014 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1672/1704 (98%)
EPI372907	A/Egypt/N7562/2011 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1673/1705 (98%)
EPI348152	A/chicken/Egypt/11VIR4453-268/2010 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1672/1704 (98%)
EPI340138	A/duck/Egypt/1125S/2011 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1672/1704 (98%)
EPI340101	A/chicken/Egypt/1112AF/2011 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1672/1704 (98%)
EPI340087	A/duck/Egypt/11193SF/2011 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1672/1704 (98%)
EPI340085	A/chicken/Egypt/1118AF/2011 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1672/1704 (98%)
EPI338615	A/duck/Egypt/Q2645C/2010 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1672/1704 (98%)
EPI608786	A/turkey/Israel/209/2015 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1629/1641 (99%)
EPI608780	A/turkey/Jenin/39/2015 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1629/1641 (99%)
EPI597825	A/turkey/Egypt/1414CAL/2014 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1671/1704 (98%)
EPI597823	A/turkey/Egypt/14125S/2014 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1671/1704 (98%)
EPI597818	A/chicken/Egypt/1461S/2014 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1671/1704 (98%)
EPI597816	A/duck/Egypt/1435CAS/2014 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1672/1705 (98%)
EPI557136	A/Turkey/Egypt/BSU5114-AR2218/2014 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1669/1701 (98%)
EPI373011	A/Egypt/N04288/2011 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1671/1704 (98%)
EPI372963	A/Egypt/N10621/2011 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1671/1704 (98%)
EPI340151	A/chicken/Egypt/10513S/2010 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1671/1704 (98%)
EPI340136	A/chicken/Egypt/1112/2011 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1671/1704 (98%)
EPI340104	A/chicken/Egypt/117AD/2011 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1671/1704 (98%)
EPI550507	A/duck/Egypt/14VIR784-8-1339S/2013 (A/H5N1) segment 4 (HA)	2963.1	0.000000e+00	1670/1703 (98%)
EPI348158	A/chicken/Egypt/11VIR4453-109/VRLCU/2011 (A/H5N1) segment 4 (HA)	2963.1	0.000000e+00	1670/1703 (98%)
EPI608781	A/turkey/Israel/274/2015 (A/H5N1) segment 4 (HA)	2961.3	0.000000e+00	1627/1639 (99%)
EPI373020	A/Egypt/N08932/2010 (A/H5N1) segment 4 (HA)	2961.3	0.000000e+00	1670/1704 (98%)
EPI348160	A/chicken/Egypt/11VIR4453-267/2010 (A/H5N1) segment 4 (HA)	2961.3	0.000000e+00	1669/1702 (98%)
EPI348157	A/chicken/Egypt/11VIR4453-15/VRLCU/2010 (A/H5N1) segment 4 (HA)	2961.3	0.000000e+00	1669/1702 (98%)
EPI348156	A/chicken/Egypt11VIR4453-269/2010 (A/H5N1) segment 4 (HA)	2961.3	0.000000e+00	1669/1703 (98%)
EPI608784	A/chicken/Israel/333/2015 (A/H5N1) segment 4 (HA)	2959.5	0.000000e+00	1628/1641 (99%)
EPI608782	A/turkey/Israel/174/2015 (A/H5N1) segment 4 (HA)	2959.5	0.000000e+00	1628/1641 (99%)
EPI608779	A/chicken/Qalqilya/53/2015 (A/H5N1) segment 4 (HA)	2959.5	0.000000e+00	1628/1641 (99%)
EPI597817	A/chicken/Egypt/1460S/2014 (A/H5N1) segment 4 (HA)	2959.5	0.000000e+00	1670/1704 (98%)
EPI597814	A/chicken/Egypt/1429S/2014 (A/H5N1) segment 4 (HA)	2959.5	0.000000e+00	1670/1704 (98%)
EPI397334	A/duck/Egypt/1111sg/2011 (A/H5N1) segment 4 (HA)	2959.5	0.000000e+00	1670/1704 (98%)

niman · October 27, 2015

LOCUS       KT792914                1750 bp    cRNA    linear   VRL 20-OCT-2015
DEFINITION  Influenza A virus (A/chicken/Gaza/803/2015(H5N1)) segment 4
            hemagglutinin (HA) gene, complete cds.
ACCESSION   KT792914
VERSION     KT792914.1  GI:938454694
KEYWORDS    .
SOURCE      Influenza A virus (A/chicken/Gaza/803/2015(H5N1))
  ORGANISM  Influenza A virus (A/chicken/Gaza/803/2015(H5N1))
            Viruses; ssRNA viruses; ssRNA negative-strand viruses;
            Orthomyxoviridae; Influenzavirus A.
REFERENCE   1  (bases 1 to 1750)
  AUTHORS   Shkoda,I., Lapin,K., Simanov,L., Alnakhal,R. and Lublin,A.
  TITLE     Highly pathogenic avian influenza A virus H5N1 isolated in Israel
            2015
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1750)
  AUTHORS   Shkoda,I., Lapin,K., Simanov,L., Alnakhal,R. and Lublin,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-SEP-2015) Division of Avian Diseases, Kimron
            Veterinari Institute, P.O.Box 12, Bet Dagan 50250, Israel
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: SeqMan DNAStar v. DNASTAR Lasergene 8
            Sequencing Technology :: IonTorrent
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers


     source          1..1750
                     /organism="Influenza A virus
                     (A/chicken/Gaza/803/2015(H5N1))"
                     /mol_type="viral cRNA"
                     /strain="A/chicken/Gaza/803/2015"
                     /serotype="H5N1"
                     /host="chicken"
                     /db_xref="taxon:1720086"
                     /segment="4"
                     /country="Israel"
                     /collection_date="01-Jun-2015"
                     /note="passage details: E1"


     gene            4..1707
                     /gene="HA"


     CDS             4..1707
                     /gene="HA"
                     /function="receptor binding and fusion protein"
                     /codon_start=1
                     /product="hemagglutinin"
                     /protein_id="ALJ33529.1"
                     /db_xref="GI:938454695"
                     /translation="MEKIVLLLAIASIVKSDQICIGYHANNSTEQVDTIMEKNVTVTH
                     AQDILEKTHNGKLCNLDGVKPLILRDCSVAGWLLGNPMCDEFLNVPEWSYIVEKINPA
                     NDLCYPGNFNDYEELKHLLSRINHFEKIQIIPKDSWSDHEASGVSSACPYQGRSSFFR
                     NVVWLTKKNDAYPTIKKSYNNTNQEDLLVLWGIHHPNDAAEQTRLYQNPTTYISVGTS
                     TLNQRLVPKIATRSKVNGQSGRMEFFWTILKSNDAINFESNGNFIAPENAYKIVKKGD
                     STIMKSELEYSNCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNRLVLATGLRN
                     SPQGEKRRKKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQRAIDG
                     VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE
                     RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHRCDNECMESVRNGTYDYPQYS
                     EEARLKREEISGVKLESIGTYQILSIYSTVASSLALAIMVAGLSLWMCSNGSLQCRIC
                     I"


     sig_peptide     4..51
                     /gene="HA"


     mat_peptide     52..1038
                     /gene="HA"
                     /product="HA1"


     mat_peptide     1039..1704
                     /gene="HA"
                     /product="HA2"
ORIGIN      
        1 aaaatggaga aaatagtgct tcttcttgca atagccagta ttgtcaaaag tgatcagatt
       61 tgcattggtt accatgcaaa caactcgaca gagcaggttg acacaataat ggaaaagaac
      121 gtcactgtta cacacgccca agacatactg gaaaagacac acaacgggaa actctgcaat
      181 ctagatggag tgaagcctct cattttaaga gattgtagtg tagctggatg gctcctcggg
      241 aacccaatgt gcgatgagtt cctcaatgtg ccggaatggt cttacatagt ggagaaaatc
      301 aatccagcca atgacctctg ttatccaggg aatttcaacg actatgaaga actgaaacac
      361 ctattgagca gaataaacca ttttgagaaa attcagatca ttcccaaaga ttcttggtca
      421 gatcatgaag cctcaggagt gagctcagca tgcccatacc aaggaagatc ctcctttttt
      481 agaaatgttg tatggcttac caaaaagaac gatgcatacc caacaataaa gaaaagttac
      541 aataatacta accaagaaga tcttttggta ctatggggga ttcaccatcc aaatgatgct
      601 gcagagcaga caaggcttta tcaaaaccca actacctata tctccgttgg gacatcaaca
      661 ctaaaccaga gattggtacc caaaatagct actagatcta aggtaaacgg gcaaagtgga
      721 aggatggaat tcttttggac aattttaaaa tcgaatgatg caataaactt tgagagcaat
      781 ggaaacttca ttgctccaga aaatgcatac aaaattgtca agaaaggaga ttcaacaatt
      841 atgaaaagtg agttggaata tagtaactgc aacaccaagt gtcagactcc aataggggcg
      901 ataaactcca gtatgccatt ccacaacatc caccctctca ccatcgggga atgccccaaa
      961 tatgtgaaat caaacagatt agtccttgct actgggctca ggaatagccc tcaaggagag
     1021 aaaagaagaa aaaagagagg actattcgga gccatagcag gttttataga gggaggatgg
     1081 cagggaatgg tagatggttg gtatgggtac caccatagca acgagcaggg gagtgggtac
     1141 gctgcagaca aagaatccac tcaaagggct atagatggag tcaccaataa ggtcaattca
     1201 atcattgaca aaatgaacac ccagtttgag gctgttggaa gggaatttaa taacttagaa
     1261 aggagaatag aaaatttgaa caagaagatg gaagacggat tcctagatgt ctggacctat
     1321 aatgctgaac ttctggttct catggaaaat gagagaactc tagactttca tgactcaaat
     1381 gtcaagaatc tttatgacaa ggtccgacta cagcttaggg ataatgcaaa ggagcttggt
     1441 aacggctgtt tcgagttcta tcacagatgt gataatgaat gtatggaaag tgtaagaaac
     1501 ggaacgtatg actatcctca atattcagaa gaagcaagat taaaaagaga ggaaataagt
     1561 ggagtaaaat tggagtcaat aggaacttac caaatactgt caatttattc aacagtggcg
     1621 agctccctag cactggcaat catggtggct ggtctatctt tatggatgtg ctccaatgga
     1681 tcgctacaat gcagaatttg catttaaatt tgtgagttca aattgtagtt aaaaaccccc
     1741 ttgtttctac

Descriptions

Segment-ID	Name	Score	E-Value	Identity
EPI669123	A/chicken/Gaza/803/2015 (A/H5N1) segment 4 (HA)	3147.8	0.000000e+00	1704/1704 (100%)
EPI669125	A/chicken/Gaza/797/2015 (A/H5N1) segment 4 (HA)	3142.3	0.000000e+00	1703/1704 (99%)
EPI669126	A/duck/Gaza/872/2015 (A/H5N1) segment 4 (HA)	3136.7	0.000000e+00	1702/1704 (99%)
EPI669122	A/duck/Gaza/829/2015 (A/H5N1) segment 4 (HA)	3136.7	0.000000e+00	1702/1704 (99%)
EPI669121	A/chicken/Gaza/869/2015 (A/H5N1) segment 4 (HA)	3136.7	0.000000e+00	1702/1704 (99%)
EPI669124	A/chicken/Gaza/799/2015 (A/H5N1) segment 4 (HA)	3131.2	0.000000e+00	1701/1704 (99%)
EPI669120	A/chicken/Gaza/870/2015 (A/H5N1) segment 4 (HA)	3131.2	0.000000e+00	1701/1704 (99%)
EPI669127	A/duck/Gaza/552/2015 (A/H5N1) segment 4 (HA)	3120.1	0.000000e+00	1699/1704 (99%)
EPI669119	A/chicken/Gaza/876/2015 (A/H5N1) segment 4 (HA)	3120.1	0.000000e+00	1699/1704 (99%)
EPI579781	A/duck/Egypt/CLEVB-25_N00239/2015 (A/H5N1) segment 4 (HA)	3109.0	0.000000e+00	1697/1704 (99%)
EPI579780	A/duck/Egypt/CLEVB-24_N00238/2015 (A/H5N1) segment 4 (HA)	3109.0	0.000000e+00	1697/1704 (99%)
EPI669130	A/turkey/Israel/633/2015 (A/H5N1) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI669131	A/turkey/Israel/14/2015 (A/H5N1) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI584778	A/chicken/Egypt/A10351A/2014 (A/H5N1) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI669129	A/chicken/Qatanna/468/2015 (A/H5N1) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI669128	A/turkey/Israel/658/2015 (A/H5N1) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI573268	A/Turkey/Egypt/AR238-SD177NLQP/2014 (A/H5N1) segment 4 (HA)	3070.3	0.000000e+00	1688/1701 (99%)
EPI579006	A/chicken/Egypt/CLEVB-1_N00215/2014 (A/H5N1) segment 4 (HA)	3066.6	0.000000e+00	1689/1704 (99%)
EPI573252	A/Turkey/Egypt/AR235-S240NLQP/2014 (A/H5N1) segment 4 (HA)	3064.7	0.000000e+00	1687/1701 (99%)
EPI573250	A/chicken/Egypt/AR234-FAOF8NLQP/2014 (A/H5N1) segment 4 (HA)	3064.7	0.000000e+00	1687/1701 (99%)
EPI573244	A/chicken/Egypt/AR231-CA113NLQP/2014 (A/H5N1) segment 4 (HA)	3064.7	0.000000e+00	1687/1701 (99%)
EPI579784	A/chicken/Egypt/CLEVB-18_N00232/2015 (A/H5N1) segment 4 (HA)	3059.2	0.000000e+00	1688/1704 (99%)
EPI579783	A/chicken/Egypt/CLEVB-21_N00235/2015 (A/H5N1) segment 4 (HA)	3059.2	0.000000e+00	1688/1704 (99%)
EPI579782	A/chicken/Egypt/CLEVB-20_N00234/2015 (A/H5N1) segment 4 (HA)	3059.2	0.000000e+00	1688/1704 (99%)
EPI579520	A/chicken/Egypt/CLEVB-17_N00231/2015 (A/H5N1) segment 4 (HA)	3059.2	0.000000e+00	1688/1704 (99%)
EPI579325	A/chicken/Egypt/CLEVB-16_N00230/2014 (A/H5N1) segment 4 (HA)	3059.2	0.000000e+00	1688/1704 (99%)
EPI579324	A/chicken/Egypt/CLEVB-19_N00233/2015 (A/H5N1) segment 4 (HA)	3059.2	0.000000e+00	1688/1704 (99%)
EPI574132	A/Egypt/MOH-NRC-7305/2014 (A/H5N1) segment 4 (HA)	3059.2	0.000000e+00	1688/1704 (99%)
EPI557138	A/Quail/Egypt/BSU5514-AR2219/2014 (A/H5N1) segment 4 (HA)	3059.2	0.000000e+00	1686/1701 (99%)
EPI573248	A/chicken/Egypt/AR233-S283NLQP/2014 (A/H5N1) segment 4 (HA)	3055.5	0.000000e+00	1684/1699 (99%)
EPI642537	A/Egypt/682/2015 (A/H5N1) segment 4 (HA)	3048.1	0.000000e+00	1686/1704 (98%)
EPI573260	A/Duck/Egypt/AR236-A3NLQP/2015 (A/H5N1) segment 4 (HA)	3048.1	0.000000e+00	1684/1701 (99%)
EPI573246	A/Duck/Egypt/AR232-A13NLQP/2014 (A/H5N1) segment 4 (HA)	3037.0	0.000000e+00	1682/1701 (98%)
EPI584783	A/Egypt/MOH-NRC-8434/2014 (A/H5N1) segment 4 (HA)	3031.5	0.000000e+00	1683/1704 (98%)
EPI574125	A/Egypt/MOH-NRC-7271/2014 (A/H5N1) segment 4 (HA)	3031.5	0.000000e+00	1683/1704 (98%)
EPI550493	A/duck/Egypt/14VIR784-4-133AD/2013 (A/H5N1) segment 4 (HA)	3020.4	0.000000e+00	1681/1704 (98%)
EPI573322	A/chicken/Egypt/152RS/2015 (A/H5N1) segment 4 (HA)	3016.7	0.000000e+00	1660/1674 (99%)
EPI573315	A/duck/Egypt/BS-146RS-f6/2014 (A/H5N1) segment 4 (HA)	3013.0	0.000000e+00	1659/1673 (99%)
EPI573321	A/chicken/Egypt/153AF/2015 (A/H5N1) segment 4 (HA)	3011.2	0.000000e+00	1659/1674 (99%)
EPI573319	A/chicken/Egypt/152/2015 (A/H5N1) segment 4 (HA)	3009.3	0.000000e+00	1657/1671 (99%)
EPI573330	A/chicken/Egypt/1476CA/2014 (A/H5N1) segment 4 (HA)	3003.8	0.000000e+00	1658/1674 (99%)
EPI557194	A/Duck/Egypt/NLQP27SG-AR750/2013 (A/H5N1) segment 4 (HA)	3003.8	0.000000e+00	1676/1701 (98%)
EPI573328	A/chicken/Egypt/14168CA/2014 (A/H5N1) segment 4 (HA)	3000.1	0.000000e+00	1650/1663 (99%)
EPI573318	A/chicken/Egypt/1478CAL/2014 (A/H5N1) segment 4 (HA)	3000.1	0.000000e+00	1650/1663 (99%)
EPI557178	A/chicken/Egypt/NLQP33SD-AR748/2013 (A/H5N1) segment 4 (HA)	2998.2	0.000000e+00	1676/1702 (98%)
EPI500079	A/goose/Egypt/M7221D/2013 (A/H5N1) segment 4 (HA)	2992.7	0.000000e+00	1676/1704 (98%)
EPI500078	A/chicken/Egypt/M7217A/2013 (A/H5N1) segment 4 (HA)	2992.7	0.000000e+00	1676/1704 (98%)
EPI487342	A/chicken/Egypt/M7217B/2013 (A/H5N1) segment 4 (HA)	2992.7	0.000000e+00	1676/1704 (98%)
EPI500109	A/chicken/Egypt/Q5283C/2012 (A/H5N1) segment 4 (HA)	2989.0	0.000000e+00	1675/1704 (98%)
EPI504991	A/chicken/Egypt/BSU-BS-R24/2012 (A/H5N1) segment 4 (HA)	2987.2	0.000000e+00	1675/1704 (98%)
EPI504990	A/chicken/Egypt/BSU-BS-F27/2012 (A/H5N1) segment 4 (HA)	2987.2	0.000000e+00	1675/1704 (98%)
EPI373013	A/Egypt/N00166/2011 (A/H5N1) segment 4 (HA)	2987.2	0.000000e+00	1676/1705 (98%)
EPI348153	A/chicken/Egypt/11VIR4453-266/2010 (A/H5N1) segment 4 (HA)	2983.5	0.000000e+00	1674/1704 (98%)
EPI597822	A/duck/Egypt/1471SG/2014 (A/H5N1) segment 4 (HA)	2981.6	0.000000e+00	1675/1705 (98%)
EPI557218	A/chicken/Egypt/NLQP139V-AR753/2013 (A/H5N1) segment 4 (HA)	2981.6	0.000000e+00	1672/1701 (98%)
EPI340133	A/goose/Egypt/1117SF/2011 (A/H5N1) segment 4 (HA)	2981.6	0.000000e+00	1674/1704 (98%)
EPI603916	A/duck/Egypt/154FAOFL/2015 (A/H5N1) segment 4 (HA)	2977.9	0.000000e+00	1631/1640 (99%)
EPI597815	A/turkey/Egypt/1438S/2014 (A/H5N1) segment 4 (HA)	2976.1	0.000000e+00	1673/1704 (98%)
EPI500082	A/duck/Egypt/M7218B/2013 (A/H5N1) segment 4 (HA)	2976.1	0.000000e+00	1674/1705 (98%)
EPI340135	A/chicken/Egypt/1113/2011 (A/H5N1) segment 4 (HA)	2976.1	0.000000e+00	1673/1704 (98%)
EPI338733	A/duck/Egypt/M2583B/2010 (A/H5N1) segment 4 (HA)	2976.1	0.000000e+00	1674/1705 (98%)
EPI338732	A/duck/Egypt/M2583C/2010 (A/H5N1) segment 4 (HA)	2976.1	0.000000e+00	1674/1705 (98%)
EPI338616	A/duck/Egypt/M2583D/2010 (A/H5N1) segment 4 (HA)	2976.1	0.000000e+00	1674/1705 (98%)
EPI608783	A/turkey/Israel/188/2015 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1630/1641 (99%)
EPI608778	A/chicken/Israel/88/2015 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1630/1641 (99%)
EPI608777	A/turkey/Israel/107/2015 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1630/1641 (99%)
EPI600754	A/chicken/Egypt/N05832-CLEVB754/2011 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1670/1701 (98%)
EPI597812	A/chicken/Egypt/1422S/2014 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1672/1704 (98%)
EPI372907	A/Egypt/N7562/2011 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1673/1705 (98%)
EPI348152	A/chicken/Egypt/11VIR4453-268/2010 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1672/1704 (98%)
EPI340138	A/duck/Egypt/1125S/2011 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1672/1704 (98%)
EPI340101	A/chicken/Egypt/1112AF/2011 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1672/1704 (98%)
EPI340087	A/duck/Egypt/11193SF/2011 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1672/1704 (98%)
EPI340085	A/chicken/Egypt/1118AF/2011 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1672/1704 (98%)
EPI338615	A/duck/Egypt/Q2645C/2010 (A/H5N1) segment 4 (HA)	2970.5	0.000000e+00	1672/1704 (98%)
EPI608786	A/turkey/Israel/209/2015 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1629/1641 (99%)
EPI608780	A/turkey/Jenin/39/2015 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1629/1641 (99%)
EPI597825	A/turkey/Egypt/1414CAL/2014 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1671/1704 (98%)
EPI597823	A/turkey/Egypt/14125S/2014 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1671/1704 (98%)
EPI597818	A/chicken/Egypt/1461S/2014 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1671/1704 (98%)
EPI597816	A/duck/Egypt/1435CAS/2014 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1672/1705 (98%)
EPI557136	A/Turkey/Egypt/BSU5114-AR2218/2014 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1669/1701 (98%)
EPI373011	A/Egypt/N04288/2011 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1671/1704 (98%)
EPI372963	A/Egypt/N10621/2011 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1671/1704 (98%)
EPI340151	A/chicken/Egypt/10513S/2010 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1671/1704 (98%)
EPI340136	A/chicken/Egypt/1112/2011 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1671/1704 (98%)
EPI340104	A/chicken/Egypt/117AD/2011 (A/H5N1) segment 4 (HA)	2965.0	0.000000e+00	1671/1704 (98%)
EPI550507	A/duck/Egypt/14VIR784-8-1339S/2013 (A/H5N1) segment 4 (HA)	2963.1	0.000000e+00	1670/1703 (98%)
EPI348158	A/chicken/Egypt/11VIR4453-109/VRLCU/2011 (A/H5N1) segment 4 (HA)	2963.1	0.000000e+00	1670/1703 (98%)
EPI608781	A/turkey/Israel/274/2015 (A/H5N1) segment 4 (HA)	2961.3	0.000000e+00	1627/1639 (99%)
EPI373020	A/Egypt/N08932/2010 (A/H5N1) segment 4 (HA)	2961.3	0.000000e+00	1670/1704 (98%)
EPI348160	A/chicken/Egypt/11VIR4453-267/2010 (A/H5N1) segment 4 (HA)	2961.3	0.000000e+00	1669/1702 (98%)
EPI348157	A/chicken/Egypt/11VIR4453-15/VRLCU/2010 (A/H5N1) segment 4 (HA)	2961.3	0.000000e+00	1669/1702 (98%)
EPI348156	A/chicken/Egypt11VIR4453-269/2010 (A/H5N1) segment 4 (HA)	2961.3	0.000000e+00	1669/1703 (98%)
EPI608784	A/chicken/Israel/333/2015 (A/H5N1) segment 4 (HA)	2959.5	0.000000e+00	1628/1641 (99%)
EPI608782	A/turkey/Israel/174/2015 (A/H5N1) segment 4 (HA)	2959.5	0.000000e+00	1628/1641 (99%)
EPI608779	A/chicken/Qalqilya/53/2015 (A/H5N1) segment 4 (HA)	2959.5	0.000000e+00	1628/1641 (99%)
EPI597817	A/chicken/Egypt/1460S/2014 (A/H5N1) segment 4 (HA)	2959.5	0.000000e+00	1670/1704 (98%)
EPI597814	A/chicken/Egypt/1429S/2014 (A/H5N1) segment 4 (HA)	2959.5	0.000000e+00	1670/1704 (98%)
EPI397334	A/duck/Egypt/1111sg/2011 (A/H5N1) segment 4 (HA)	2959.5	0.000000e+00	1670/1704 (98%)

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2015 Israel H5N1 Matches Egypt

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