niman Posted July 16, 2016 Report Share Posted July 16, 2016 NAMRU-6 has released a full Zika Columbia sequence collected Oct 7, 2015, COL/FCC00093/2015. Link to comment Share on other sites More sharing options...
niman Posted July 16, 2016 Author Report Share Posted July 16, 2016 LOCUS KX548902 10615 bp ss-RNA linear VRL 14-JUL-2016 DEFINITION Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds. ACCESSION KX548902 VERSION KX548902.1 GI:1043566592 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10615) AUTHORS Leguia,M., Guevara,C., Felices,V., Troncos,G., Espejo,V., Torre,A., Ampuero,S., Ochoa,M. and Gomez,D. TITLE Full genomic characterization of a Zika virus isolate from Colombia JOURNAL Unpublished REFERENCE 2 (bases 1 to 10615) AUTHORS Leguia,M., Guevara,C., Felices,V., Troncos,G., Espejo,V., Torre,A., Ampuero,S., Ochoa,M. and Gomez,D. TITLE Direct Submission JOURNAL Submitted (11-JUL-2016) Virology and Emerging Infections Department, U.S. Naval Medical Research Unit No. 6, Av. Venezuela Cdra. 36 s/n, Bellavista, Callao 07006, Peru COMMENT ##Assembly-Data-START## Assembly Method :: CLC Genomics Workbench v. 8.5.1 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10615 /organism="Zika virus" /mol_type="genomic RNA" /isolate="ZIKV/COL/FCC00093/2015" /isolation_source="culture supernatant of serum sample" /host="Homo sapiens" /db_xref="taxon:64320" /country="Colombia" /collection_date="07-Oct-2015" 5'UTR <1..35 CDS 36..10307 /codon_start=1 /product="polyprotein" /protein_id="ANS60026.1" /db_xref="GI:1043566593" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGAETSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVYVEETCGTR GPSLRSLTASGRVIEEWCCRECTMPPLSFWAKDGCWYGMEIRPRKEPESNLVRSMVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVKPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPHDNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT PVAKWTDIPYLEKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST QVRYLGEEGSTPGVL" 3'UTR 10308..>10615 ORIGIN 1 ttttattttg gatttggaaa cgagagtttc tggtcatgaa aaacccaaaa aagaaatccg 61 gaggattccg gattgtcaat atgctaaaac gcggagtagc ccgtgtgagc ccctttgggg 121 gcttgaagag gctgccagcc ggacttctgc tgggtcatgg gcccatcagg atggtcttgg 181 cgattctagc ctttttgaga ttcacggcaa tcaagccatc actgggtctc atcaatagat 241 ggggttcagt ggggaaaaaa gaggctatgg aaataataaa gaagttcaag aaagatctgg 301 ctgccatgct gagaataatc aatgctagga aggagaagaa gagacgaggc gcagaaacta 361 gtgtcggaat tgttggcctc ctgctgacca cagctatggc agcggaggtc actagacgtg 421 ggagtgcata ctatatgtac ttggacagaa acgatgctgg ggaggccata tcttttccaa 481 ccacattggg gatgaataag tgttatatac agatcatgga tcttggacac atgtgtgatg 541 ccaccatgag ctatgaatgc cctatgctgg atgagggggt ggaaccagat gacgtcgatt 601 gttggtgcaa cacgacgtca acttgggttg tgtacggaac ctgccatcac aaaaaaggtg 661 aagcacggag atctagaaga gccgtgacgc tcccctccca ttccactagg aagctgcaaa 721 cgcggtcgca aacctggttg gaatcaagag aatacacaaa gcacttgatt agagtcgaaa 781 attggatatt caggaaccct ggtttcgctt tagcagcagc tgccatcgct tggcttttgg 841 gaagctcaac gagccaaaaa gtcatatact tggtcatgat actgctgatt gccccggcat 901 acagcatcag gtgcatagga gtcagcaata gggactttgt ggaaggtatg tcaggtggga 961 cttgggttga tgttgtcttg gaacatggag gttgtgtcac cgtaatggca caggacaaac 1021 cgactgtcga catagagctg gttacaacaa cagtcagcaa catggcggag gtaagatcct 1081 actgctatga ggcatcaata tcagacatgg cttcggacag ccgctgccca acacaaggtg 1141 aagcctacct tgacaagcaa tcagacactc aatatgtctg caaaagaacg ttagtggaca 1201 gaggctgggg aaatggatgt ggactttttg gcaaagggag cctggtgaca tgcgctaagt 1261 ttgcatgctc caagaaaatg accgggaaga gcatccagcc agagaatctg gagtaccgga 1321 taatgttgtc agttcatggc tcccagcaca gtgggatgat cgttaatgac acaggacatg 1381 aaactgatga gaatagagcg aaggttgaga taacgcccaa ttcaccaaga gccgaagcca 1441 ccctgggggg ttttggaagc ctaggacttg attgtgaacc gaggacaggc cttgactttt 1501 cagatttgta ttacttgact atgaataaca agcactggtt ggttcacaag gagtggttcc 1561 acgacattcc attaccttgg cacgctgggg cagacaccgg aactccacac tggaacaaca 1621 aagaagcact ggtagagttc aaggacgcac atgccaaaag gcaaactgtc gtggttctag 1681 ggagtcaaga aggagcagtt cacacggccc ttgctggagc tctggaggct gagatggatg 1741 gtgcaaaggg aaggctgtcc tctggccact tgaaatgtcg cctgaaaatg gataaactta 1801 gattgaaggg cgtgtcatac tccttgtgta ccgcagcgtt cacattcacc aagatcccgg 1861 ctgaaacact gcacgggaca gtcacagtgg aggtacagta cgcagggaca gatggacctt 1921 gcaaggttcc agctcagatg gcggtggaca tgcaaactct gaccccagtt gggaggttga 1981 taaccgctaa ccccgtaatc actgaaagca ctgagaactc taagatgatg ctggaacttg 2041 atccaccatt tggggactct tacattgtca taggagtcgg ggagaagaag atcacccacc 2101 actggcacag gagtggcagc accattggaa aagcatttga agccactgtg agaggtgcca 2161 agagaatggc agtcttggga gacacagcct gggactttgg atcagttgga ggcgctctta 2221 actcattggg caagggcatc catcaaattt ttggagcagc tttcaaatca ttgtttggag 2281 gaatgtcctg gttctcacaa attcttattg gaacgttgct gatgtggttg ggtctgaaca 2341 caaagaatgg atctatttcc cttatgtgct tggccttggg gggagtgttg atcttcttat 2401 ccacagccgt ctctgctgat gtggggtgct cggtggactt ctcaaagaag gagacgagat 2461 gtggtacagg ggtgttcgtc tataacgacg ttgaagcctg gagggacagg tacaagtacc 2521 atcctgactc cccccgtaga ttggcagcag cagtcaagca agcctgggaa gatggtatct 2581 gcgggatctc ctctgtttca agaatggaaa acatcatgtg gagatcagta gaaggggagc 2641 tcaacgcaat cctggaagag aatggagttc aactgacggt cgttgtggga tctgtaaaaa 2701 accccatgtg gagaggtcca cagagattgc ccgtgcctgt gaacgagctg ccccacggct 2761 ggaaggcttg ggggaaatcg tacttcgtca gagcagcaaa gacaaataac agctttgtcg 2821 tggatggtga cacactgaag gaatgcccac tcaaacatag agcatggaac agctttcttg 2881 tggaggatca tgggttcggg gtatttcaca ctagtgtctg gctcaaggtt agagaagatt 2941 attcattaga gtgtgatcca gccgttattg gaacagctgt taagggaaag gaggctgtac 3001 acagtgatct aggctactgg attgagagtg agaagaatga cacatggagg ctgaagaggg 3061 cccatctgat cgagatgaaa acatgtgaat ggccaaagtc ccacacattg tggacagatg 3121 gaatagaaga gagtgatctg atcataccca agtctttagc tgggccactc agccatcaca 3181 ataccagaga gggctacagg acccaaatga aagggccatg gcacagtgaa gagcttgaaa 3241 ttcggtttga ggaatgccca ggcactaagg tctacgtgga ggaaacatgt ggaacaagag 3301 gaccatctct gagatcactc actgcaagcg gaagggtgat cgaggaatgg tgctgcaggg 3361 agtgcacaat gcccccactg tcgttctggg ctaaagatgg ctgttggtat ggaatggaga 3421 taaggcccag gaaagaacca gaaagcaact tagtaaggtc aatggtgact gcaggatcaa 3481 ctgatcacat ggatcacttc tcccttggag tgcttgtgat tctgctcatg gtgcaggaag 3541 ggctgaagaa gagaatgacc acaaagatca tcataagcac atcaatggca gtgctggtag 3601 ctatgatcct gggaggattt tcaatgagtg acctggctaa gcttgcaatt ttgatgggtg 3661 ccaccttcgc ggaaatgaac actggaggag atgtagctca tctggcgctg atagcggcat 3721 tcaaagtcaa accagcgttg ctggtatctt tcatcttcag agctaattgg acaccccgtg 3781 aaagcatgct gttggccttg gcctcgtgtc ttttgcaaac tgcgatctct gccttggaag 3841 gcgacctgat ggttctcatc aatggttttg ctttggcctg gttggcaata cgagcgatgg 3901 ttgttccacg cactgacaac atcaccttgg caatcctggc tgctctgaca ccactggccc 3961 ggggcacact gcttgtggcg tggagagcag gccttgctac ttgcgggggg tttatgctcc 4021 tctctctgaa gggaaaaggc agtgtgaaga agaacttacc atttgtcatg gccctgggac 4081 taaccgctgt gaggctggtc gaccccatca acgtggtggg actgctgttg ctcacaagga 4141 gtgggaagcg gagctggccc cctagcgaag tactcacagc tgttggcctg atatgcgcat 4201 tggctggagg gttcgccaag gcagatatag agatggctgg gcccatggcc gcggtcggtc 4261 tgctaattgt cagttacgtg gtctcaggaa agagtgtgga catgtacatt gaaagagcag 4321 gtgacatcac atgggaaaaa gatgcggaag tcactggaaa cagtccccgg ctcgatgtgg 4381 cgctagatga gagtggtgat ttctccctgg tggaggatga cggtcccccc atgagagaga 4441 tcatactcaa ggtggtcctg atgaccatct gtggcatgaa cccaatagcc ataccctttg 4501 cagctggagc gtggtacgta tacgtgaaga ctggaaaaag gagtggtgct ctatgggatg 4561 tgcctgctcc caaggaagta aaaaaggggg agaccacaga tggagtgtac agagtaatga 4621 ctcgtagact gctaggttca acacaagttg gagtgggagt tatgcaagag ggggtctttc 4681 acactatgtg gcacgtcaca aaaggatccg cgctgagaag cggtgaaggg agacttgatc 4741 catactgggg agatgtcaag caggatctgg tgtcatactg tggtccatgg aagctagatg 4801 ccgcctggga cgggcacagc gaggtgcagc tcttggccgt gccccccgga gagagagcga 4861 ggaacatcca gactctgccc ggaatattta agacaaagga tggggacatt ggagcggttg 4921 cgctggatta cccagcagga acttcaggat ctccaatcct agacaagtgt gggagagtga 4981 taggacttta tggcaatggg gtcgtgatca aaaatgggag ttatgttagt gccatcaccc 5041 aagggaggag ggaggaagag actcctgttg agtgcttcga gccttcgatg ctgaagaaga 5101 agcagctaac tgtcttagac ttgcatcctg gagctgggaa aaccaggaga gttcttcctg 5161 aaatagtccg tgaagccata aaaacaagac tccgtactgt gatcttagct ccaaccaggg 5221 ttgtcgctgc tgaaatggag gaagccctta gagggcttcc agtgcgttat atgacaacag 5281 cagtcaatgt cacccactct ggaacagaaa tcgtcgactt aatgtgccat gccaccttca 5341 cttcacgtct actacagcca atcagagtcc cccacgataa tctgtatatt atggatgagg 5401 cccacttcac agatccctca agtatagcag caagaggata catttcaaca agggttgaga 5461 tgggcgaggc ggctgccatc ttcatgaccg ccacgccacc aggaacccgt gacgcatttc 5521 cggactccaa ctcaccaatt atggacaccg aagtggaagt cccagagaga gcctggagct 5581 caggctttga ttgggtgacg gatcattctg gaaaaacagt ttggtttgtt ccaagcgtga 5641 ggaacggcaa tgagatcgca gcttgtctga caaaggctgg aaaacgggtc atacagctca 5701 gcagaaagac ttttgagaca gagttccaga aaacaaaaca tcaagagtgg gactttgtcg 5761 tgacaactga catttcagag atgggcgcca actttaaagc tgaccgtgtc atagattcca 5821 ggagatgcct aaagccggtc atacttgatg gcgagagagt cattctggct ggacccatgc 5881 ctgtcacaca tgccagcgct gcccagagga gggggcgcat aggcaggaat cccaataaac 5941 ctggagatga gtatctgtat ggaggtgggt gcgcagagac tgacgaagac catgcacact 6001 ggcttgaagc aagaatgctc cttgacaata tttacctcca agatggcctc atagcctcgc 6061 tctatcgacc tgaggccgac aaagtagcag ccattgaggg agagttcaag cttaggacgg 6121 agcaaaggaa gacctttgtg gaactcatga aaagaggaga tcttcctgtt tggctggcct 6181 atcaggttgc atctgccgga ataacctaca cagatagaag atggtgcttt gatggcacga 6241 ccaacaacac cataatggaa gacagtgtgc cggcagaggt gtggaccaga cacggagaga 6301 aaagagtgct caaaccgagg tggatggacg ccagagtttg ttcagatcat gcggccctga 6361 agtcattcaa ggagtttgcc gctgggaaaa gaggagcggc ttttggagtg atggaagccc 6421 tgggaacact gccaggacac atgacagaga gattccagga agccattgac aacctcgctg 6481 tgctcatgcg ggcagagact ggaagcaggc cttacaaagc cgcggcggcc caattgccgg 6541 agaccctaga gaccattatg cttttggggt tgctgggaac agtctcgctg ggaatctttt 6601 tcgtcttgat gaggaacaag ggcataggga agatgggctt tggaatggtg actcttgggg 6661 ccagcgcatg gctcatgtgg ctctcggaaa ttgagccagc cagaattgca tgtgtcctca 6721 ttgttgtgtt cctattgctg gtggtgctca tacctgagcc agaaaagcaa agatctcccc 6781 aggacaacca aatggcaatc atcatcatgg tagcagtagg tcttctgggc ttgattaccg 6841 ccaatgaact cggatggttg gagagaacaa agagtgacct aagccatcta atgggaagga 6901 gagaggaggg ggcaaccata ggattctcaa tggacattga cctgcggcca gcctcagctt 6961 gggccatcta tgctgccttg acaactttca ttaccccagc cgtccaacat gcagtgacca 7021 cttcatacaa caactactcc ttaatggcga tggccacgca agctggagtg ttgtttggta 7081 tgggcaaagg gatgccattc tacgcatggg actttggagt cccgctgcta atgataggtt 7141 gctactcaca attaacaccc ctgaccctaa tagtggccat cattttgctc gtggcgcact 7201 acatgtactt gatcccaggg ctgcaggcag cagctgcgcg tgctgcccag aagagaacgg 7261 cagctggcat catgaagaac cctgttgtgg atggaatagt ggtgactgac attgacacaa 7321 tgacaattga cccccaagtg gagaaaaaga tgggacaggt gctactcata gcagtagccg 7381 tctccagcgc catactgtcg cggaccgcct gggggtgggg ggaggctggg gccctgatca 7441 cagccgcaac ttccactttg tgggaaggct ctccgaacaa gtactggaac tcctctacag 7501 ccacttcact gtgtaacatt tttaggggaa gttacttggc tggagcttct ctaatctaca 7561 cagtaacaag aaacgctggc ttggtcaaga gacgtggggg tggaacagga gagaccctgg 7621 gagagaaatg gaaggcccgc ttgaaccaga tgtcggccct ggagttctac tcctacaaaa 7681 agtcaggcat caccgaggtg tgcagagaag aggcccgccg cgccctcaag gacggtgtgg 7741 caacgggagg ccatgctgtg tcccgaggaa gtgcaaagct gagatggttg gtggagcggg 7801 gatacctgca gccctatgga aaggtcattg atcttggatg tggcagaggg ggctggagtt 7861 actacgccgc caccatccgc aaagttcaag aagtgaaagg atacacaaaa ggaggccctg 7921 gtcatgaaga acccgtgttg gtgcaaagct atgggtggaa tatagtccgt cttaagagtg 7981 gggtggacgt ctttcatatg gcggctgagc cgtgtgacac gttgctgtgt gacataggtg 8041 agtcatcatc tagtcctgaa gtggaagaag cacggacgct cagagtcctc tccatggtgg 8101 gggattggct tgaaaaaaga ccaggagcct tttgtataaa agtgttgtgc ccatacacca 8161 gcactatgat ggaaaccctg gagcgactgc agcgtaggta tgggggagga ctggtcagag 8221 tgccactctc ccgcaactct acacatgaga tgtactgggt ctctggagcg aaaagcaaca 8281 ccataaaaag tgtgtccacc acgagccagc tcctcttggg gcgcatggac gggcctagga 8341 ggccagtgaa atatgaggag gatgtgaatc tcggctctgg cacgcgggct gtggtaagct 8401 gcgctgaagc tcccaacatg aagatcattg gtaaccgcat tgaaaggatc cgcagtgagc 8461 acgcggaaac gtggttcttt gacgagaacc acccatatag gacatgggct taccatggaa 8521 gctatgaggc ccccacacaa gggtcagcgt cctctctaat aaacggggtt gtcaggctcc 8581 tgtcaaaacc ctgggatgtg gtgactggag tcacaggaat agccatgacc gacaccacac 8641 cgtatggtca gcaaagagtt ttcaaggaaa aagtggacac tagggtgcca gacccccaag 8701 aaggcactcg tcaggttatg agcatggtct cttcctggtt gtggaaagag ctaggcaaac 8761 acaaacggcc acgagtctgt accaaagaag agttcatcaa caaggttcgt agcaatgcag 8821 cattaggggc aatatttgaa gaggaaaaag agtggaagac tgcagtggaa gctgtgaacg 8881 atccaaggtt ctgggctcta gtggacaagg aaagagagca ccacctgaga ggagagtgcc 8941 agagttgtgt gtacaacatg atgggaaaaa gagaaaagaa acaaggggaa tttggaaagg 9001 ccaagggcag ccgcgccatc tggtatatgt ggctaggggc tagatttcta gagttcgaag 9061 cccttggatt cttgaacgag gatcactgga tggggagaga gaactcagga ggtggtgttg 9121 aagggctggg attacaaaga ctcggatatg tcctagaaga gatgagtcgc ataccaggag 9181 gaaggatgta tgcagatgac actgctggct gggacacccg catcagcagg tttgatctgg 9241 agaatgaagc tctaatcacc aaccaaatgg agaaagggca cagggccttg gcattggcca 9301 taatcaagta cacataccaa aacaaagtgg taaaggtcct tagaccagct gaaaaaggga 9361 aaacagttat ggacattatt tcgagacaag accaaagggg gagcggacaa gttgtcactt 9421 acgctcttaa cacatttacc aacctagtgg tgcaactcat tcggaatatg gaggctgagg 9481 aagttctaga gatgcaagac ttgtggctgc tgcggaggtc agagaaagtg accaactggt 9541 tgcagagcaa cggatgggat aggctcaaac gaatggcagt cagtggagat gattgcgttg 9601 tgaagccaat tgatgatagg tttgcacatg ccctcaggtt cttgaatgat atgggaaaag 9661 ttaggaagga cacacaagag tggaaaccct caactggatg ggacaactgg gaagaagttc 9721 cgttttgctc ccaccacttc aacaagctcc atctcaagga cgggaggtcc attgtggttc 9781 cctgccgcca ccaagatgaa ctgattggcc gggcccgcgt ctctccaggg gcgggatgga 9841 gcatccggga gactgcttgc ctagcaaaat catatgcgca aatgtggcag ctcctttatt 9901 tccacagaag ggacctccga ctgatggcca atgccatttg ttcatctgtg ccagttgact 9961 gggttccaac tgggagaact acctggtcaa tccatggaaa gggagaatgg atgaccactg 10021 aagacatgct tgtggtgtgg aacagagtgt ggattgagga gaacgaccac atggaagaca 10081 agaccccagt tgcgaaatgg acagacattc cctatttgga aaaaagggaa gacttgtggt 10141 gtggatctct catagggcac agaccgcgca ccacctgggc tgagaacatt aaaaacacag 10201 tcaacatggt gcgcaggatc ataggtgatg aagaaaagta catggactac ctatccaccc 10261 aagttcgcta cttgggtgaa gaagggtcta cacctggagt gctgtaagca ccaatcttaa 10321 tgttgtcagg cctgctagtc agccacagct tggggaaagc tgtgcagcct gtgacccccc 10381 caggagaagc tgggaaacca agcctatagt caggccgaga acgccatggc acggaagaag 10441 ccatgctgcc tgtgagcccc tcagaggaca ctgagtcaaa aaaccccacg cgcttggagg 10501 cgcaggatgg gaaaagaagg tggcgacctt ccccaccctt caatctgggg cctgaactgg 10561 agatcagctg tggatctcca gaagagggac tagtggttag aggagacccc ccaga Link to comment Share on other sites More sharing options...
niman Posted July 16, 2016 Author Report Share Posted July 16, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KX548902.1|Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds1852518525100%0.0100%KX548902.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds1843818438100%0.099%KU647676.1Select seq gb|KX198135.1|Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome1843518435100%0.099%KX198135.1Select seq gb|KX156776.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome1842618426100%0.099%KX156776.1Select seq gb|KX156774.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome1842018420100%0.099%KX156774.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome1842018420100%0.099%KU922960.1Select seq gb|KU820897.3|Zika virus isolate FLR polyprotein gene, complete cds1841718417100%0.099%KU820897.3Select seq gb|KX247646.1|Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome1841718417100%0.099%KX247646.1Select seq gb|KX156775.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome1841718417100%0.099%KX156775.1Select seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome1841718417100%0.099%KX087102.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome1841718417100%0.099%KU922923.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds1838418384100%0.099%KU991811.1Select seq gb|KX369547.1|Zika virus strain PF13/251013-18, complete genome1838118381100%0.099%KX369547.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome1838118381100%0.099%KU509998.3Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds1837518375100%0.099%KJ776791.1Select seq gb|KX280026.1|Zika virus isolate Paraiba_01, complete genome1836618366100%0.099%KX280026.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome1836618366100%0.099%KU321639.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome1836318363100%0.099%KX051563.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds1835718357100%0.099%KU729218.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome1835718357100%0.099%KU707826.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds1835718357100%0.099%KU365779.1Select seq gb|KX262887.1|Zika virus isolate 103451, complete genome1835418354100%0.099%KX262887.1Select seq gb|KX197192.1|Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome1835418354100%0.099%KX197192.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome183501835099%0.099%KU497555.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome1834518345100%0.099%KU926309.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds1834518345100%0.099%KU365780.1Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome1833918339100%0.099%KU940228.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds1833918339100%0.099%KU365777.1Select seq gb|KU758877.1|Zika virus isolate 17271 polyprotein gene, complete cds1833618336100%0.099%KU758877.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds1833618336100%0.099%KU501217.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds1833018330100%0.099%KU729217.2Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome1833018330100%0.099%KU527068.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds1833018330100%0.099%KU501216.1Select seq gb|KX247632.1|Zika virus isolate MEX_I_7 polyprotein gene, complete cds1832718327100%0.099%KX247632.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds1832718327100%0.099%KU365778.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds1832718327100%0.099%KU312312.1Select seq gb|KX520666.1|Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds1832118321100%0.099%KX520666.1Select seq gb|KX446951.1|Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome1831818318100%0.099%KX446951.1Select seq gb|KU937936.1|Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds1831818318100%0.099%KU937936.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome1831818318100%0.099%KU926310.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome1831818318100%0.099%KU501215.1Select seq gb|KX446950.1|Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome1831218312100%0.099%KX446950.1Select seq gb|KX087101.2|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome1831218312100%0.099%KX087101.2Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome1831218312100%0.099%KU870645.1Select seq gb|KX377337.1|Zika virus strain PRVABC-59, complete genome1830918309100%0.099%KX377337.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds1830918309100%0.099%KU820898.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome1830918309100%0.099%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome1830718307100%0.099%KU853012.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds1829418294100%0.099%KX056898.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds1829418294100%0.099%KU955590.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds1829118291100%0.099%KU740184.2Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds1829118291100%0.099%KU761564.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome1828518285100%0.099%KX117076.1Select seq gb|KX185891.1|Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds1827618276100%0.099%KX185891.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds1827618276100%0.099%KU963796.1Select seq gb|KX253996.1|Zika virus isolate ZKC2/2016, complete genome1827318273100%0.099%KX253996.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds1827318273100%0.099%KU955589.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome1827318273100%0.099%KU820899.2Select seq gb|KU866423.2|Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds1826718267100%0.099%KU866423.2Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome182451824599%0.099%KU940224.1Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome1813218132100%0.099%KU744693.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome1805118051100%0.099%KU681081.3Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome1773517735100%0.098%KU955593.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds177351773599%0.098%JN860885.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds177031770398%0.099%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds1758017580100%0.098%EU545988.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome1742517425100%0.098%KU681082.3Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds163971639799%0.095%HQ234499.1Select seq gb|KX377336.1|Zika virus strain P6-740, complete genome1639216392100%0.095%KX377336.1Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds1327213272100%0.089%KU720415.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds132661326699%0.089%HQ234498.1Select seq gb|KU955595.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome1326313263100%0.089%KU955595.1Select seq gb|KX377335.1|Zika virus strain MR-766, complete genome1325913259100%0.089%KX377335.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds1325713257100%0.089%KF268949.1Select seq gb|KU955592.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome1325413254100%0.089%KU955592.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID1325013250100%0.089%LC002520.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds1324813248100%0.089%KF383115.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds1324813248100%0.089%KF268948.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds1324513245100%0.089%KF383119.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds1324313243100%0.089%DQ859059.1Select seq gb|KX198134.1|Zika virus strain ZIKV/Aedes africanus/SEN/DAK-AR-41524_A1C1-V2/1984, complete genome1324113711100%0.089%KX198134.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds1324113241100%0.089%KF268950.1Select seq gb|KU955591.1|Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome1323613236100%0.089%KU955591.1Select seq gb|KU963573.1|Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds1323413234100%0.089%KU963573.1Select seq gb|KU955594.1|Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome1323413234100%0.089%KU955594.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds1321213212100%0.089%KF383116.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds132091320999%0.089%HQ234501.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome1319113191100%0.088%AY632535.2Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds1313713137100%0.088%KF383117.1Select seq gb|KU963574.1|Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds1311313221100%0.088%KU963574.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds131111311199%0.088%HQ234500.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds1291812986100%0.088%KF383118.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds128521285297%0.089%KF383121.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence108301083097%0.084%KF383120.1Select seq gb|KU940227.1|Zika virus isolate Bahia08, partial genome50161442287%0.095%KU940227.1Select seq gb|KX212103.1|Zika virus isolate BRZIKV_AB_ES polyprotein gene, partial cds4989498927%0.099%KX212103.1Select seq gb|KU758875.1|Zika virus isolate 15042 polyprotein gene, partial cds4969496927%0.099%KU758875.1Select seq gb|KU758871.1|Zika virus isolate 17170 polyprotein gene, partial cds4965496527%0.099%KU758871.1Select seq gb|KU758870.1|Zika virus isolate 17160 polyprotein gene, partial cds4958495827%0.099%KU758870.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds4958495827%0.099%KU312314.1Select seq gb|KU758873.1|Zika virus isolate 18246 polyprotein gene, partial cds4956495627%0.099%KU758873.1Select seq gb|KU758872.1|Zika virus isolate 01170 polyprotein gene, partial cds4944494427%0.099%KU758872.1Select seq gb|KU758876.1|Zika virus isolate 21068 polyprotein gene, partial cds4933493327%0.099%KU758876.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds4931493127%0.099%KU312313.1Select seq gb|KU758869.1|Zika virus isolate 05211 polyprotein gene, partial cds4922492226%0.099%KU758869.1Select seq gb|KU758868.1|Zika virus isolate 27229 polyprotein gene, partial cds4897489726%0.099%KU758868.1Select seq gb|KU758874.1|Zika virus isolate 20114 polyprotein gene, partial cds4893489326%0.099%KU758874.1Select seq gb|KU646828.1|Zika virus isolate Si322 polyprotein gene, partial cds4659465925%0.099%KU646828.1Select seq gb|KU646827.1|Zika virus isolate Si323 polyprotein gene, partial cds4650465025%0.099%KU646827.1Select seq gb|KX101060.1|Zika virus isolate Bahia02, partial genome42261331775%0.095%KX101060.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds3431343118%0.099%KU312315.1Select seq gb|KU740199.1|Zika virus isolate VE_Ganxian2016 polyprotein gene, partial cds3205320517%0.099%KU740199.1Select seq gb|KX101066.1|Zika virus isolate Bahia01, partial genome31101309074%0.099%KX101066.1Select seq gb|DQ859064.1|Spondweni virus strain SM-6 V-1 polyprotein gene, complete cds2843414695%0.071%DQ859064.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds2686268614%0.099%KJ634273.1Select seq gb|KX101064.1|Zika virus isolate Bahia11, partial genome22591078165%0.092%KX101064.1Select seq gb|KU686218.1|Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds2078207811%0.099%KU686218.1Select seq gb|KU179098.1|Zika virus isolate JMB-185 nonstructural protein 5 gene, partial cds2026202611%0.099%KU179098.1Select seq gb|KX059014.1|Zika virus isolate Haiti/1230/2014 NS5 gene, partial cds184218429%0.099%KX059014.1Select seq gb|KX059013.1|Zika virus isolate Haiti/1227/2014 NS5 gene, partial cds184218429%0.099%KX059013.1Select seq gb|KX101061.1|Zika virus isolate Bahia03, partial genome18401388778%0.099%KX101061.1Select seq gb|KM078936.1|Zika virus strain CHI1410214 NS5 protein gene, partial cds175517559%0.099%KM078936.1Select seq gb|KM078961.1|Zika virus strain CHI2612114 NS5 protein gene, partial cds175417549%0.099%KM078961.1Select seq gb|KM078930.1|Zika virus strain CHI2283714 NS5 protein gene, partial cds175217529%0.099%KM078930.1Select seq gb|KM078971.1|Zika virus strain CHI2613014 NS5 protein gene, partial cds174817489%0.099%KM078971.1Select seq gb|KM078970.1|Zika virus strain CHI2490414 NS5 protein gene, partial cds174817489%0.099%KM078970.1Select seq gb|KM078933.1|Zika virus strain CHI1058514 NS5 protein gene, partial cds174817489%0.099%KM078933.1Select seq gb|KM078929.1|Zika virus strain CHI1805214 NS5 protein gene, partial cds174617469%0.099%KM078929.1Select seq gb|KX173841.1|Zika virus isolate 16Z11 envelope protein gene, partial cds165816589%0.099%KX173841.1Select seq gb|KX173840.1|Zika virus isolate 16Z10 envelope protein gene, partial cds165816589%0.099%KX173840.1Select seq gb|KJ873160.1|Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds160616068%0.099%KJ873160.1Select seq gb|KX173843.1|Zika virus isolate 16Z62 envelope protein gene, partial cds152615268%0.099%KX173843.1Select seq gb|KX173844.1|Zika virus isolate 16Z62 envelope protein gene, partial cds151615168%0.099%KX173844.1Select seq gb|KJ873161.1|Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds142414247%0.099%KJ873161.1Select seq gb|KM851039.1|Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds138813887%0.099%KM851039.1Select seq gb|KU985087.1|Zika virus isolate MEX/InDRE/Zika-2/2015 nonstructural protein 5 gene, partial cds135713577%0.099%KU985087.1Select seq gb|KU556802.1|Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds135213527%0.0100%KU556802.1Select seq gb|KM851038.1|Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds135213527%0.098%KM851038.1Select seq gb|AF013415.1|Zika virus strain MR-766 NS5 protein (NS5) gene, partial cds1310131010%0.088%AF013415.1Select seq gb|KU724096.1|Zika virus isolate 259249_2015_Panama NS5B gene, partial cds130513057%0.099%KU724096.1Select seq gb|KT200609.1|Zika virus isolate BR/949/15 NS5 gene, partial cds124512456%0.099%KT200609.1Select seq gb|KU232300.1|Zika virus isolate 067ZV_PEBR15 NS5 protein gene, partial cds124312436%0.099%KU232300.1Select seq gb|KU232290.1|Zika virus isolate 036ZV_PEBR15 NS5 protein gene, partial cds123412346%0.099%KU232290.1Select seq gb|KU232297.1|Zika virus isolate 049ZV_PEBR15 NS5 protein gene, partial cds123212326%0.099%KU232297.1Select seq gb|KU232294.1|Zika virus isolate 061ZV_PEBR15 NS5 protein gene, partial cds122512256%0.0100%KU232294.1Select seq gb|KU232292.1|Zika virus isolate 054ZV_PEBR15 NS5 protein gene, partial cds122212226%0.099%KU232292.1Select seq gb|KU232298.1|Zika virus isolate 050ZV_PEBR15 NS5 protein gene, partial cds121812186%0.099%KU232298.1Select seq gb|KU232293.1|Zika virus isolate 057ZV_PEBR15 NS5 protein gene, partial cds121612166%0.099%KU232293.1Select seq gb|KU232296.1|Zika virus isolate 045ZV_PEBR15 NS5 protein gene, partial cds121412146%0.099%KU232296.1Select seq gb|KU232295.1|Zika virus isolate 068ZV_PEBR15 NS5 protein gene, partial cds121112116%0.0100%KU232295.1Select seq gb|KU232288.1|Zika virus isolate 001ZV_PEBR15 NS5 protein gene, partial cds120012006%0.0100%KU232288.1Select seq gb|KU232289.1|Zika virus isolate 020ZV_PEBR15 NS5 protein gene, partial cds119611966%0.0100%KU232289.1Select seq gb|KU232299.1|Zika virus isolate 015ZV_PEBR15 NS5 protein gene, partial cds119311936%0.0100%KU232299.1Select seq gb|KU232291.1|Zika virus isolate 051ZV_PEBR15 NS5 protein gene, partial cds118911896%0.099%KU232291.1Select seq gb|KX101063.1|Zika virus isolate Bahia05, partial genome1180742942%0.099%KX101063.1Select seq gb|KU724097.1|Zika virus isolate 259250_2015_Panama NS5B gene, partial cds117811786%0.0100%KU724097.1Select seq gb|KX101065.1|Zika virus isolate Bahia15, partial genome1175776046%0.099%KX101065.1Select seq gb|KU724098.1|Zika virus isolate 259060_2015_Panama NS5B gene, partial cds116611666%0.099%KU724098.1Select seq gb|KU758878.1|Zika virus polyprotein gene, partial cds113311336%0.099%KU758878.1Select seq gb|KU724099.1|Zika virus isolate 259032_2015_Panama NS5B gene, partial cds110111015%0.099%KU724099.1Select seq gb|KF270886.1|Zika virus strain CCB-870 envelope glycoprotein gene, partial cds107210728%0.088%KF270886.1Select seq gb|KX101062.1|Zika virus isolate Bahia04, partial genome1054731941%0.097%KX101062.1Select seq gb|KU867812.1|Zika virus isolate Jiangxi.CHN/01/2016 nonstructural protein 5 gene, partial cds101810185%0.0100%KU867812.1Select seq gb|AF372422.1|AF372422Zika virus envelope protein (E) gene, partial cds101410148%0.086%AF372422.1Select seq gb|KF270887.1|Zika virus strain CCB-870 NS3 protein gene, partial cds9919917%0.088%KF270887.1Select seq gb|KF383022.1|Zika virus strain ArD127988 envelope protein gene, partial cds9759757%0.089%KF383022.1Select seq gb|KF383026.1|Zika virus strain ArD127994 envelope protein gene, partial cds9719717%0.089%KF383026.1Select seq gb|EU303241.1|Zika virus note MR766 (p4 15/9/76) nonstructural protein 5 (NS5) gene, partial cds9679677%0.088%EU303241.1Select seq gb|KF383032.1|Zika virus strain ArD30101 envelope protein gene, partial cds9629627%0.088%KF383032.1Select seq gb|KF383037.1|Zika virus strain ArA506 envelope protein gene, partial cds9579577%0.088%KF383037.1Select seq gb|KF383034.1|Zika virus strain ArD30156 envelope protein gene, partial cds9579577%0.088%KF383034.1Select seq gb|KF383029.1|Zika virus strain ArD165522 envelope protein gene, partial cds9579577%0.088%KF383029.1Select seq gb|KF383033.1|Zika virus strain AnD30332 envelope protein gene, partial cds9539537%0.088%KF383033.1Select seq gb|KF383036.1|Zika virus strain ArA975 envelope protein gene, partial cds9519517%0.088%KF383036.1Select seq gb|KU724100.1|Zika virus isolate 259043_2015_Panama NS5B gene, partial cds9449445%0.099%KU724100.1Select seq gb|KF383028.1|Zika virus strain ArD165531 envelope protein gene, partial cds9359357%0.088%KF383028.1Select seq gb|KF383039.1|Zika virus strain HD78788 envelope protein gene, partial cds9339337%0.088%KF383039.1Select seq gb|KF383031.1|Zika virus strain ArD9957 envelope protein gene, partial cds9309307%0.087%KF383031.1Select seq gb|KF383038.1|Zika virus strain ArA986 envelope protein gene, partial cds9249247%0.087%KF383038.1Select seq gb|KF383046.1|Zika virus strain ArA982 envelope protein gene, partial cds9159157%0.087%KF383046.1Select seq gb|KF383045.1|Zika virus strain ArA27106 envelope protein gene, partial cds9029027%0.087%KF383045.1Select seq gb|KF383103.1|Zika virus strain ArA986 nonstructural protein 5 gene, partial cds9019016%0.088%KF383103.1Select seq gb|KF383086.1|Zika virus strain ArA975 nonstructural protein 5 gene, partial cds9019016%0.088%KF383086.1Select seq gb|KF383043.1|Zika virus strain ArA27443 envelope protein gene, partial cds8978977%0.087%KF383043.1Select seq gb|KF383035.1|Zika virus strain MR1429 envelope protein gene, partial cds8978977%0.086%KF383035.1Select seq gb|KF383041.1|Zika virus strain ArA27290 envelope protein gene, partial cds8938937%0.086%KF383041.1Select seq gb|KF383042.1|Zika virus strain ArA27096 envelope protein gene, partial cds8888887%0.086%KF383042.1Select seq gb|KF383104.1|Zika virus strain ArA982 nonstructural protein 5 gene, partial cds8708706%0.087%KF383104.1Select seq gb|KF383085.1|Zika virus strain ArD9957 nonstructural protein 5 gene, partial cds8708706%0.087%KF383085.1Select seq gb|KX247638.1|Zika virus isolate Dominican_Rep-Rus-3-2016 polyprotein gene, partial cds8688684%0.099%KX247638.1Select seq gb|KU978616.1|Zika virus isolate Dominican_Rep-Rus-2-2016 polyprotein gene, partial cds8658654%0.099%KU978616.1Select seq gb|KF383106.1|Zika virus strain ArA27443 nonstructural protein 5 gene, partial cds8658656%0.087%KF383106.1Select seq gb|KX101067.1|Zika virus isolate Bahia12, partial genome863849551%0.089%KX101067.1Select seq gb|KF383040.1|Zika virus strain ArA27101 envelope protein gene, partial cds8638637%0.085%KF383040.1Select seq gb|KF383114.1|Zika virus strain AnD30332 nonstructural protein 5 gene, partial cds8618616%0.087%KF383114.1Select seq gb|KF383107.1|Zika virus strain ArA27407 nonstructural protein 5 gene, partial cds8618616%0.087%KF383107.1Select seq gb|KF383088.1|Zika virus strain ArD30101 nonstructural protein 5 gene, partial cds8618616%0.087%KF383088.1Select seq gb|KF383087.1|Zika virus strain ArD30156 nonstructural protein 5 gene, partial cds8568566%0.087%KF383087.1Select seq gb|KF383089.1|Zika virus strain ArD165531 nonstructural protein 5 gene, partial cds8438436%0.086%KF383089.1Select seq gb|KF383101.1|Zika virus strain ArD127710 nonstructural protein 5 gene, partial cds8388386%0.086%KF383101.1Select seq gb|KF383097.1|Zika virus strain ArD127994 nonstructural protein 5 gene, partial cds8388386%0.086%KF383097.1Select seq gb|KF383099.1|Zika virus strain ArD127987 nonstructural protein 5 gene, partial cds8348346%0.086%KF383099.1Select seq gb|KF383098.1|Zika virus strain ArD127988 nonstructural protein 5 gene, partial cds8298296%0.086%KF383098.1Select seq dbj|AB908162.1|Zika virus gene for polyprotein, partial cds, strain: ZIKV Hu/Tahiti/01u/2014NIID8298294%0.099%AB908162.1Select seq gb|KU872850.1|Zika virus isolate Dominican Rep-Rus-2016, NS2 partial cds8208204%0.099%KU872850.1Select seq gb|KX253994.1|Zika virus strain ZIKV/Homo sapiens/GER/GER-BNI-P2/2016 polyprotein gene, partial cds8078074%0.0100%KX253994.1Select seq gb|KF383084.1|Zika virus strain HD78788 nonstructural protein 5 gene, partial cds8018016%0.085%KF383084.1Select seq gb|KF383113.1|Zika virus strain ArA1465 nonstructural protein 5 gene, partial cds7987986%0.085%KF383113.1Select seq gb|HM147824.1|West Nile virus from Democratic Republic of the Congo, complete genome780168453%0.068%HM147824.1Select seq gb|KC754958.1|Usutu virus isolate ArB1803, complete genome778184554%0.068%KC754958.1Select seq gb|EF429199.1|West Nile virus SA381/00, complete genome760160246%0.068%EF429199.1Select seq gb|KM203863.1|West Nile virus strain Cz 13-502, complete genome747165554%0.068%KM203863.1Select seq gb|KF383017.1|Zika virus strain ArD149938 envelope protein gene, partial cds7137137%0.081%KF383017.1Select seq gb|KF383016.1|Zika virus strain ArD147917 envelope protein gene, partial cds7087087%0.081%KF383016.1Select seq gb|KF383015.1|Zika virus strain ArD149810 envelope protein gene, partial cds7087087%0.081%KF383015.1Select seq gb|KF383021.1|Zika virus strain ArD132912 envelope protein gene, partial cds7027027%0.081%KF383021.1Select seq gb|KF383020.1|Zika virus strain ArA1465 envelope protein gene, partial cds7027027%0.081%KF383020.1Select seq gb|KF258813.1|Zika virus isolate Java non-structural protein 5 mRNA, partial cds6996993%0.099%KF258813.1Select seq gb|KF383019.1|Zika virus strain ArD132915 envelope protein gene, partial cds6866867%0.080%KF383019.1Select seq gb|KX253995.1|Zika virus strain ZIKV/Homo sapiens/PRI/PRI-BNI-P1/2016 polyprotein gene, partial cds6816813%0.0100%KX253995.1Select seq gb|JF262780.1|Dengue virus 4 isolate P73-1120, complete genome675172750%0.070%JF262780.1Select seq gb|EF457906.1|Dengue virus type 4 isolate P75-215, complete genome672162647%0.069%EF457906.1Select seq gb|KF383092.1|Zika virus strain ArD147917 nonstructural protein 5 gene, partial cds6596596%0.081%KF383092.1Select seq gb|KF383093.1|Zika virus strain ArD149810 nonstructural protein 5 gene, partial cds6576576%0.081%KF383093.1Select seq gb|KF383095.1|Zika virus strain ArD132915 nonstructural protein 5 gene, partial cds6546546%0.080%KF383095.1Select seq gb|KF383091.1|Zika virus strain ArD149938 nonstructural protein 5 gene, partial cds6486486%0.080%KF383091.1Select seq gb|KU985088.1|Zika virus isolate MEX/InDRE/Zika-2/2015 envelope protein gene, partial cds6456453%8e-18099%KU985088.1Select seq gb|KX062045.1|Zika virus isolate Haiti/1230/2014 envelope protein gene, partial cds6306303%2e-175100%KX062045.1Select seq gb|KX062044.1|Zika virus isolate Haiti/1227/2014 envelope protein gene, partial cds6256253%7e-17499%KX062044.1Select seq gb|DQ181799.1|Dengue virus type 2 strain ThD2_0017_98, complete genome612163553%5e-17069%DQ181799.1Select seq gb|KX173842.1|Zika virus isolate 16Z08 envelope protein gene, partial cds5895893%5e-16399%KX173842.1Select seq gb|KR815989.1|Zika virus isolate 15095 envelope protein gene, partial cds5875873%2e-16299%KR815989.1Select seq gb|EU529701.1|Dengue virus 2 isolate DENV-2/US/BID-V1087/1991, complete genome583166148%2e-16168%EU529701.1Select seq gb|JN819408.1|Dengue virus 2 isolate DENV-2/VE/BID-V2161/2001, complete genome581158248%8e-16168%JN819408.1Select seq gb|GU131887.1|Dengue virus 1 isolate DENV-1/IPC/BID-V3775/2006, complete genome576151442%3e-15968%GU131887.1Select seq gb|EU482580.1|Dengue virus 2 isolate DENV-2/US/BID-V1177/1989, complete genome574164348%1e-15868%EU482580.1Select seq gb|EU569702.1|Dengue virus 2 isolate DENV-2/NI/BID-V1228/2007, complete genome572161850%4e-15868%EU569702.1Select seq gb|JN819407.1|Dengue virus 2 isolate DENV-2/VE/BID-V2613/2007, complete genome567159445%2e-15668%JN819407.1Select seq gb|EU596483.1|Dengue virus 2 isolate DENV-2/NI/BID-V608/2006, complete genome567162750%2e-15668%EU596483.1Select seq gb|FJ898466.1|Dengue virus 2 isolate DENV-2/VE/BID-V2942/2000, complete genome563156848%2e-15568%FJ898466.1Select seq gb|KR816334.1|Zika virus isolate BR/UFBA/LabViro/Ex1 envelope protein gene, partial cds5455452%6e-15099%KR816334.1Select seq gb|KR816333.1|Zika virus isolate BR/UFBA/LabViro/23 envelope protein gene, partial cds5445442%2e-14999%KR816333.1Select seq gb|KR816335.1|Zika virus isolate BR/UFBA/LabViro/18 envelope protein gene, partial cds5405402%2e-14899%KR816335.1Select seq gb|KM212966.1|Zika virus isolate NC13(FP)-26112013-22072 glycoprotein gene, partial cds5355352%1e-146100%KM212966.1Select seq gb|KM212965.1|Zika virus isolate NC13(FP)-20112013-22015 glycoprotein gene, partial cds5295292%4e-14599%KM212965.1Select seq gb|KM212964.1|Zika virus isolate NC14-17042014-4554 glycoprotein gene, partial cds5295292%4e-14599%KM212964.1Select seq gb|KM212963.1|Zika virus isolate NC14-23012014-250 glycoprotein gene, partial cds5295292%4e-14599%KM212963.1Select seq gb|KJ579441.1|Zika virus isolate PF13-CP221013c polyprotein gene, partial cds5085082%1e-138100%KJ579441.1Select seq gb|KJ680134.1|Zika virus strain PF13-091213-121 polyprotein gene, partial cds5025022%6e-13799%KJ680134.1Select seq gb|KX261853.1|Zika virus isolate ZIKCOL10 polyprotein gene, partial cds4464462%4e-12099%KX261853.1 Link to comment Share on other sites More sharing options...
niman Posted July 16, 2016 Author Report Share Posted July 16, 2016 Sequence map updatehttps://www.google.com/maps/d/u/0/edit?hl=en&mid=1XSxKe6FIecV8f33cQwyc7uylxeU Link to comment Share on other sites More sharing options...
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