niman Posted July 20, 2016 Report Share Posted July 20, 2016 Viral load kinetics of Zika virus in plasma, urine and saliva in a couple returning from Martinique, French West Indieshttp://www.journalofclinicalvirology.com/article/S1386-6532(16)30144-5/abstract Link to comment Share on other sites More sharing options...
niman Posted July 20, 2016 Author Report Share Posted July 20, 2016 LOCUS KU886298 1039 bp RNA linear VRL 18-JUL-2016 DEFINITION Zika virus isolate MN NS5 gene, partial cds. ACCESSION KU886298 VERSION KU886298.1 GI:1004613915 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 1039) AUTHORS Fourcade,C., Mansuy,J.M., Dutertre,M., Delpech,M., Marchou,B., Delobel,P., Izopet,J. and Martin-Blondel,G. TITLE Viral load kinetics of Zika virus in plasma, urine and saliva in a couple returning from Martinique, French West Indies JOURNAL J. Clin. Virol. 82 (2016) In press PUBMED 27389909 REMARK Publication Status: Available-Online prior to print REFERENCE 2 (bases 1 to 1039) AUTHORS Fourcade,C., Mansuy,J.-M., Dutertre,M., Delpech,M., Marchou,B., Delobel,P., Izopet,J. and Martin-Blondel,G. TITLE Direct Submission JOURNAL Submitted (10-MAR-2016) Virology, CHU Toulouse, 330 avenue de Grande Bretagne, Toulouse 31300, France COMMENT ##Assembly-Data-START## Assembly Method :: Seqscape v. 2.5 Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1039 /organism="Zika virus" /mol_type="genomic RNA" /isolate="MN" /host="Homo sapiens" /db_xref="taxon:64320" /country="France" /collection_date="15-Feb-2016" CDS <1..>1039 /note="nonstructural protein" /codon_start=1 /product="NS5" /protein_id="AMP44573.1" /db_xref="GI:1004613916" /translation="EKKQGEFGKAKGSRAIWYMWLGARFLEFEALGFLNEDHWMGREN SGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWDTRISRFDLENEALITNQMEKG HRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQDQRGSGQVVTYALNTFTNLVV QLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDRLKRMAVSGDDCVVKPIDDRFA HALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHHFNKLHLKDGRSIVVPCRHQDE LIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRRDLRLMANAICSSVPVDWVPTG XTTWSIHGKGEW" ORIGIN 1 gaaaagaaac aaggggaatt tggaaaggcc aagggcagcc gcgccatctg gtatatgtgg 61 ctaggggcta gatttctaga gttcgaagcc cttggattct tgaacgagga tcactggatg 121 gggagagaga actcaggagg tggtgttgaa gggctgggat tacaaagact cggatatgtc 181 ctagaagaga tgagtcgcat accaggagga aggatgtatg cagatgacac tgctggctgg 241 gacacccgca tcagcaggtt tgatctggag aatgaagctc taatcaccaa ccaaatggag 301 aaagggcaca gggccttggc attggccata atcaagtaca cataccaaaa caaagtggta 361 aaggtcctta gaccagctga aaaagggaaa acagttatgg acattatttc gagacaagac 421 caaaggggga gcggacaagt tgtcacttac gctcttaaca catttaccaa cctagtggtg 481 caactcattc ggaatatgga ggctgaggaa gttctagaga tgcaagactt gtggctgctg 541 cggaggtcag agaaagtgac caactggttg cagagcaacg gatgggatag gctcaaacga 601 atggcagtca gtggagatga ttgcgttgtg aagccaattg atgataggtt tgcacatgcc 661 ctcaggttct tgaatgatat gggaaaagtt aggaaggaca cacaagagtg gaaaccctca 721 actggatggg acaactggga agaagttccg ttttgctccc accacttcaa caagctccat 781 ctcaaggacg ggaggtccat tgtggttccc tgccgccacc aagatgaact gattggccgg 841 gcccgcgtct ctccaggggc gggatggagc atccgggaga ctgcttgcct agcaaaatca 901 tatgcgcaaa tgtggcagct cctttatttc cacagaaggg acctccgact gatggccaat 961 gccatttgtt catctgtgcc agttgactgg gttccaactg ggaraactac ctggtcaatc 1021 catggaaagg gagaatgga Link to comment Share on other sites More sharing options...
niman Posted July 20, 2016 Author Report Share Posted July 20, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU886298.1|Zika virus isolate MN NS5 gene, partial cds19161916100%0.0100%KU886298.1Select seq gb|KX548902.1|Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds19161916100%0.099%KX548902.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome19161916100%0.099%KU497555.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds19161916100%0.099%KU647676.1Select seq gb|KX369547.1|Zika virus strain PF13/251013-18, complete genome19101910100%0.099%KX369547.1Select seq gb|KU820897.3|Zika virus isolate FLR polyprotein gene, complete cds19101910100%0.099%KU820897.3Select seq gb|KX280026.1|Zika virus isolate Paraiba_01, complete genome19101910100%0.099%KX280026.1Select seq gb|KX262887.1|Zika virus isolate 103451, complete genome19101910100%0.099%KX262887.1Select seq gb|KX247646.1|Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome19101910100%0.099%KX247646.1Select seq gb|KX197192.1|Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome19101910100%0.099%KX197192.1Select seq gb|KX156776.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome19101910100%0.099%KX156776.1Select seq gb|KX156775.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome19101910100%0.099%KX156775.1Select seq gb|KX156774.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome19101910100%0.099%KX156774.1Select seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome19101910100%0.099%KX087102.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome19101910100%0.099%KX051563.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome19101910100%0.099%KU509998.3Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome19101910100%0.099%KU870645.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome19101910100%0.099%KU926310.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds19101910100%0.099%KU729217.2Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome19101910100%0.099%KU321639.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds19101910100%0.099%KJ776791.1Select seq gb|KX446951.1|Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome19051905100%0.099%KX446951.1Select seq gb|KX446950.1|Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome19051905100%0.099%KX446950.1Select seq gb|KX377337.1|Zika virus strain PRVABC-59, complete genome19051905100%0.099%KX377337.1Select seq gb|KU758877.1|Zika virus isolate 17271 polyprotein gene, complete cds19051905100%0.099%KU758877.1Select seq gb|KX247632.1|Zika virus isolate MEX_I_7 polyprotein gene, complete cds19051905100%0.099%KX247632.1Select seq gb|KX087101.2|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome19051905100%0.099%KX087101.2Select seq gb|KX198135.1|Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome19051905100%0.099%KX198135.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds19051905100%0.099%KU991811.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome19051905100%0.099%KU926309.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome19051905100%0.099%KU922960.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome19051905100%0.099%KU922923.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome19051905100%0.099%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome19051905100%0.099%KU853012.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome19051905100%0.099%KU707826.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome19051905100%0.099%KU527068.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds19051905100%0.099%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds19051905100%0.099%KU501216.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome19051905100%0.099%KU501215.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds19051905100%0.099%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds19051905100%0.099%KU365779.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds19051905100%0.099%KU365777.1Select seq gb|KX520666.1|Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds18991899100%0.099%KX520666.1Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome18991899100%0.099%KU940228.1Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome18991899100%0.099%KU940224.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds18991899100%0.099%KU820898.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds18991899100%0.099%KU729218.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds18991899100%0.099%KU312312.1Select seq gb|KU937936.1|Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds18931893100%0.099%KU937936.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds18931893100%0.099%KX056898.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds18931893100%0.099%KU955590.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds18931893100%0.099%KU740184.2Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds18931893100%0.099%KU761564.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds18931893100%0.099%KU365778.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome18881888100%0.099%KX117076.1Select seq gb|KU866423.2|Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds18821882100%0.099%KU866423.2Select seq gb|KX253996.1|Zika virus isolate ZKC2/2016, complete genome18821882100%0.099%KX253996.1Select seq gb|KX185891.1|Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds18821882100%0.099%KX185891.1Select seq gb|KX059014.1|Zika virus isolate Haiti/1230/2014 NS5 gene, partial cds1882188298%0.099%KX059014.1Select seq gb|KX059013.1|Zika virus isolate Haiti/1227/2014 NS5 gene, partial cds1882188298%0.099%KX059013.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds18821882100%0.099%KU963796.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds18821882100%0.099%KU955589.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome18821882100%0.099%KU820899.2Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome18821882100%0.099%KU744693.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds18771877100%0.099%KF993678.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome18601860100%0.099%KU681081.3Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome18211821100%0.098%KU955593.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds18211821100%0.098%JN860885.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds18211821100%0.098%EU545988.1Select seq gb|KU179098.1|Zika virus isolate JMB-185 nonstructural protein 5 gene, partial cds1805180596%0.099%KU179098.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome17941794100%0.098%KU681082.3Select seq gb|KM078936.1|Zika virus strain CHI1410214 NS5 protein gene, partial cds1794179493%0.099%KM078936.1Select seq gb|KM078961.1|Zika virus strain CHI2612114 NS5 protein gene, partial cds1790179093%0.099%KM078961.1Select seq gb|KM078930.1|Zika virus strain CHI2283714 NS5 protein gene, partial cds1788178893%0.099%KM078930.1Select seq gb|KM078971.1|Zika virus strain CHI2613014 NS5 protein gene, partial cds1784178493%0.099%KM078971.1Select seq gb|KM078970.1|Zika virus strain CHI2490414 NS5 protein gene, partial cds1784178493%0.099%KM078970.1Select seq gb|KM078933.1|Zika virus strain CHI1058514 NS5 protein gene, partial cds1784178493%0.099%KM078933.1Select seq gb|KM078929.1|Zika virus strain CHI1805214 NS5 protein gene, partial cds1783178393%0.099%KM078929.1Select seq gb|KJ873160.1|Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds1644164485%0.099%KJ873160.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds16221622100%0.095%HQ234499.1Select seq gb|KX377336.1|Zika virus strain P6-740, complete genome16161616100%0.095%KX377336.1Select seq gb|KJ873161.1|Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds1458145876%0.099%KJ873161.1Select seq gb|KM851039.1|Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds1410141075%0.099%KM851039.1Select seq gb|KU985087.1|Zika virus isolate MEX/InDRE/Zika-2/2015 nonstructural protein 5 gene, partial cds1389138972%0.099%KU985087.1Select seq gb|KU556802.1|Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds1384138472%0.0100%KU556802.1Select seq gb|KM851038.1|Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds1365136575%0.098%KM851038.1Select seq gb|KU724096.1|Zika virus isolate 259249_2015_Panama NS5B gene, partial cds1336133669%0.099%KU724096.1Select seq gb|KU232300.1|Zika virus isolate 067ZV_PEBR15 NS5 protein gene, partial cds1273127366%0.099%KU232300.1Select seq gb|KU232290.1|Zika virus isolate 036ZV_PEBR15 NS5 protein gene, partial cds1264126466%0.099%KU232290.1Select seq gb|KU232297.1|Zika virus isolate 049ZV_PEBR15 NS5 protein gene, partial cds1260126066%0.099%KU232297.1Select seq gb|KU232294.1|Zika virus isolate 061ZV_PEBR15 NS5 protein gene, partial cds1254125465%0.0100%KU232294.1Select seq gb|KX198134.1|Zika virus strain ZIKV/Aedes africanus/SEN/DAK-AR-41524_A1C1-V2/1984, complete genome12511251100%0.088%KX198134.1Select seq gb|KU232292.1|Zika virus isolate 054ZV_PEBR15 NS5 protein gene, partial cds1251125165%0.099%KU232292.1Select seq gb|KU232298.1|Zika virus isolate 050ZV_PEBR15 NS5 protein gene, partial cds1247124764%0.0100%KU232298.1Select seq gb|KX377335.1|Zika virus strain MR-766, complete genome12451245100%0.088%KX377335.1Select seq gb|KU963573.1|Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds12451245100%0.088%KU963573.1Select seq gb|KU955594.1|Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome12451245100%0.088%KU955594.1Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds12451245100%0.088%KU720415.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID12451245100%0.088%LC002520.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds12451245100%0.088%HQ234498.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds12451245100%0.088%DQ859059.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome12451245100%0.088%AY632535.2Select seq gb|KU232296.1|Zika virus isolate 045ZV_PEBR15 NS5 protein gene, partial cds1243124364%0.0100%KU232296.1Select seq gb|KU232293.1|Zika virus isolate 057ZV_PEBR15 NS5 protein gene, partial cds1243124365%0.099%KU232293.1Select seq gb|KU955595.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome12401240100%0.088%KU955595.1Select seq gb|KU955591.1|Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome12401240100%0.088%KU955591.1Select seq gb|KU232295.1|Zika virus isolate 068ZV_PEBR15 NS5 protein gene, partial cds1240124064%0.0100%KU232295.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds12401240100%0.088%KF268949.1Select seq gb|KU955592.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome12341234100%0.088%KU955592.1Select seq gb|KU232288.1|Zika virus isolate 001ZV_PEBR15 NS5 protein gene, partial cds1229122964%0.0100%KU232288.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds12291229100%0.088%KF383116.1Select seq gb|AF013415.1|Zika virus strain MR-766 NS5 protein (NS5) gene, partial cds1227122799%0.088%AF013415.1Select seq gb|KU232289.1|Zika virus isolate 020ZV_PEBR15 NS5 protein gene, partial cds1225122563%0.0100%KU232289.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds12231223100%0.088%KF383121.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds12231223100%0.088%KF383119.1Select seq gb|KU232299.1|Zika virus isolate 015ZV_PEBR15 NS5 protein gene, partial cds1221122163%0.0100%KU232299.1Select seq gb|KU232291.1|Zika virus isolate 051ZV_PEBR15 NS5 protein gene, partial cds1216121664%0.099%KU232291.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds12121212100%0.088%HQ234501.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds12081208100%0.088%KF268950.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds12081208100%0.088%KF268948.1Select seq gb|KU724097.1|Zika virus isolate 259250_2015_Panama NS5B gene, partial cds1206120662%0.0100%KU724097.1Select seq gb|KU963574.1|Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds12011201100%0.087%KU963574.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds12011201100%0.088%KF383118.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds12011201100%0.087%HQ234500.1Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds11951195100%0.087%KF383117.1Select seq gb|KU724098.1|Zika virus isolate 259060_2015_Panama NS5B gene, partial cds1194119462%0.099%KU724098.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds11361136100%0.086%KF383115.1Select seq gb|KU724099.1|Zika virus isolate 259032_2015_Panama NS5B gene, partial cds1127112758%0.099%KU724099.1Select seq gb|KU867812.1|Zika virus isolate Jiangxi.CHN/01/2016 nonstructural protein 5 gene, partial cds99899852%0.099%KU867812.1Select seq gb|KU724100.1|Zika virus isolate 259043_2015_Panama NS5B gene, partial cds96596550%0.099%KU724100.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence865865100%0.082%KF383120.1Select seq gb|KF383103.1|Zika virus strain ArA986 nonstructural protein 5 gene, partial cds84684668%0.088%KF383103.1Select seq gb|KF383086.1|Zika virus strain ArA975 nonstructural protein 5 gene, partial cds84684668%0.088%KF383086.1Select seq gb|KX253994.1|Zika virus strain ZIKV/Homo sapiens/GER/GER-BNI-P2/2016 polyprotein gene, partial cds82682643%0.0100%KX253994.1Select seq gb|KF383104.1|Zika virus strain ArA982 nonstructural protein 5 gene, partial cds81381368%0.087%KF383104.1Select seq gb|KF383085.1|Zika virus strain ArD9957 nonstructural protein 5 gene, partial cds80880868%0.087%KF383085.1Select seq gb|KF383106.1|Zika virus strain ArA27443 nonstructural protein 5 gene, partial cds80280268%0.087%KF383106.1Select seq gb|KF383114.1|Zika virus strain AnD30332 nonstructural protein 5 gene, partial cds79779768%0.087%KF383114.1Select seq gb|KF383107.1|Zika virus strain ArA27407 nonstructural protein 5 gene, partial cds79779768%0.087%KF383107.1Select seq gb|KF383088.1|Zika virus strain ArD30101 nonstructural protein 5 gene, partial cds79779768%0.087%KF383088.1Select seq gb|KF383087.1|Zika virus strain ArD30156 nonstructural protein 5 gene, partial cds79179168%0.087%KF383087.1Select seq gb|KX101064.1|Zika virus isolate Bahia11, partial genome77895349%0.0100%KX101064.1Select seq gb|KF383089.1|Zika virus strain ArD165531 nonstructural protein 5 gene, partial cds77477468%0.086%KF383089.1Select seq gb|KF383101.1|Zika virus strain ArD127710 nonstructural protein 5 gene, partial cds76976968%0.086%KF383101.1Select seq gb|KF383097.1|Zika virus strain ArD127994 nonstructural protein 5 gene, partial cds76976968%0.086%KF383097.1Select seq gb|KF383099.1|Zika virus strain ArD127987 nonstructural protein 5 gene, partial cds76376368%0.086%KF383099.1Select seq gb|KF383098.1|Zika virus strain ArD127988 nonstructural protein 5 gene, partial cds75875868%0.086%KF383098.1Select seq gb|KX101061.1|Zika virus isolate Bahia03, partial genome734155481%0.099%KX101061.1Select seq gb|KF383113.1|Zika virus strain ArA1465 nonstructural protein 5 gene, partial cds71971968%0.085%KF383113.1Select seq gb|KX101060.1|Zika virus isolate Bahia02, partial genome71771737%0.099%KX101060.1Select seq gb|KX253995.1|Zika virus strain ZIKV/Homo sapiens/PRI/PRI-BNI-P1/2016 polyprotein gene, partial cds69769736%0.0100%KX253995.1Select seq gb|KX101066.1|Zika virus isolate Bahia01, partial genome61098951%2e-17099%KX101066.1Select seq gb|KF383092.1|Zika virus strain ArD147917 nonstructural protein 5 gene, partial cds55555568%1e-15381%KF383092.1Select seq gb|KF383093.1|Zika virus strain ArD149810 nonstructural protein 5 gene, partial cds55355368%3e-15381%KF383093.1Select seq gb|KF383091.1|Zika virus strain ArD149938 nonstructural protein 5 gene, partial cds54254268%7e-15081%KF383091.1Select seq gb|KU940227.1|Zika virus isolate Bahia08, partial genome499124365%5e-137100%KU940227.1Select seq gb|KX101067.1|Zika virus isolate Bahia12, partial genome48348325%5e-132100%KX101067.1Select seq gb|KF258813.1|Zika virus isolate Java non-structural protein 5 mRNA, partial cds45545524%1e-12398%KF258813.1Select seq gb|KU752544.1|Zika virus isolate PoHuZV469196 nonstructural protein 5 gene, partial cds37937919%6e-101100%KU752544.1Select seq gb|KU752545.1|Zika virus isolate PoHuZV472846 nonstructural protein 5 gene, partial cds37437419%3e-9999%KU752545.1Select seq gb|KX358623.1|Zika virus isolate AF01 nonstructural protein 5 gene, partial cds35335318%4e-93100%KX358623.1Select seq gb|DQ859064.1|Spondweni virus strain SM-6 V-1 polyprotein gene, complete cds31631698%5e-8273%DQ859064.1Select seq gb|AF013406.1|Spondweni virus strain SAAR-94 NS5 protein (NS5) gene, partial cds31131197%2e-8072%AF013406.1Select seq gb|KX101065.1|Zika virus isolate Bahia15, partial genome30356830%4e-78100%KX101065.1Select seq gb|JX041632.1|West Nile virus strain Ig2266, complete genome23123198%2e-5671%JX041632.1Select seq gb|GQ851604.1|West Nile virus strain G15578 polyprotein gene, complete cds23123198%2e-5671%GQ851604.1Select seq gb|GQ851605.1|West Nile virus strain G16146 polyprotein gene, complete cds22222298%1e-5371%GQ851605.1Select seq gb|DQ256376.1|West Nile virus strain 804994, complete genome21121198%2e-5071%DQ256376.1Select seq gb|KX101063.1|Zika virus isolate Bahia05, partial genome19635018%7e-46100%KX101063.1Select seq gb|KX101062.1|Zika virus isolate Bahia04, partial genome16523112%2e-3698%KX101062.1 Link to comment Share on other sites More sharing options...
niman Posted July 20, 2016 Author Report Share Posted July 20, 2016 Sequence Map Updatehttps://www.google.com/maps/d/u/0/edit?hl=en&mid=1XSxKe6FIecV8f33cQwyc7uylxeU Link to comment Share on other sites More sharing options...
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