November 9, 201510 yr comment_784 June 2014 partial sequences from afield outbreak in a dromedary camel farm in Abu Dhabi Emirate, United Arab Emirates are identical to human sequences. Report
November 9, 201510 yr Author comment_785 LOCUS KT828666 605 bp RNA linear VRL 21-OCT-2015 DEFINITION Middle East respiratory syndrome coronavirus isolate Abudhabi-3 ORF1a (ORF1a) gene, partial cds. ACCESSION KT828666 VERSION KT828666.1 GI:939129421 KEYWORDS . SOURCE Middle East respiratory syndrome coronavirus (MERS-CoV) ORGANISM Middle East respiratory syndrome coronavirus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; unclassified Betacoronavirus. REFERENCE 1 (bases 1 to 605) AUTHORS Eltahir,Y.M. TITLE Clinical Presentation of Middle East Respiratory Syndrome Corona Virus (MERS-Co V) field outbreak in a dromedary camel farm in Abu Dhabi Emirate, United Arab Emirates JOURNAL Unpublished REFERENCE 2 (bases 1 to 605) AUTHORS Eltahir,Y.M., Sayed,N.A. and AL Almuhairi,S.S. TITLE Direct Submission JOURNAL Submitted (26-SEP-2015) Abudhabi Food Control Authority, ABudhabi, Abudhabi, United Arab Emirates COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..605 /organism="Middle East respiratory syndrome coronavirus" /mol_type="genomic RNA" /isolate="Abudhabi-3" /isolation_source="nasal swab" /host="Camelus dromedarius" /db_xref="taxon:1335626" /country="United Arab Emirates" /collection_date="Jun-2014" gene <1..>605 /gene="ORF1a" CDS <1..>605 /gene="ORF1a" /codon_start=1 /product="ORF1a" /protein_id="ALJ54522.1" /db_xref="GI:939129422" /translation="VFVTTLTSDYTITVFVTVNLAKVCTYAIFAYSPQLTLVFPEVKM ILLLYTCLGFMCTCYFGVFSLLNLKLRAPMGVYDFKVSTQEFRFMTANNLTAPRNSWE AMALNFKLIGIGGTPCIKVAAMQSKLTDLKCTSVVLLSVLQQLHLEANSRAWAFCVKC HNDILAATDPSEAFEKFVSLFATLMTFSGNVDLDALASDIF" ORIGIN 1 gtttttgtca ctacactcac tagtgattat acgattacag tctttgttac tgtcaacctt 61 gcaaaagttt gcacttatgc catctttgct tactcaccac agcttacact tgtgtttccg 121 gaagtgaaga tgatactttt attatacaca tgtttaggtt tcatgtgtac ttgctatttt 181 ggtgtcttct ctcttttgaa ccttaagctt agagcaccta tgggtgtcta tgactttaag 241 gtctcaacac aagagttcag attcatgact gctaacaatc taactgcacc tagaaattct 301 tgggaggcta tggctctgaa ctttaagtta ataggtattg gcggtacacc ttgtataaag 361 gttgctgcta tgcagtctaa acttacagat cttaaatgca catctgtggt tctcctctct 421 gtgctccaac agttacactt agaggctaat agtagggcct gggctttctg tgttaaatgc 481 cataatgata tattggcagc aacagacccc agtgaggctt tcgagaaatt cgtaagtctc 541 tttgccactt taatgacttt ttctggtaat gtagatcttg atgcgttagc tagtgatatt 601 tttga Report
November 9, 201510 yr Author comment_786 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KT828669.1|Middle East respiratory syndrome coronavirus isolate Abudhabi-9 ORF1a (ORF1a) gene, partial cds11181118100%0.0100%KT828669.1Select seq gb|KT828668.1|Middle East respiratory syndrome coronavirus isolate Abudhabi-6 ORF1a (ORF1a) gene, partial cds11181118100%0.0100%KT828668.1Select seq gb|KT828667.1|Middle East respiratory syndrome coronavirus isolate Abudhabi-5 ORF1a (ORF1a) gene, partial cds11181118100%0.0100%KT828667.1Select seq gb|KT828666.1|Middle East respiratory syndrome coronavirus isolate Abudhabi-3 ORF1a (ORF1a) gene, partial cds11181118100%0.0100%KT828666.1Select seq gb|KT225476.2|Middle East respiratory syndrome coronavirus isolate MERS-CoV/THA/CU/17_06_2015, complete genome11181118100%0.0100%KT225476.2Select seq gb|KT156561.1|Middle East respiratory syndrome coronavirus strain Hu/Oman_2874_2013, complete genome11181118100%0.0100%KT156561.1Select seq gb|KT156560.1|Middle East respiratory syndrome coronavirus strain Hu/Oman_2285_2013, complete genome11181118100%0.0100%KT156560.1Select seq gb|KT026456.1|Middle East respiratory syndrome coronavirus isolate Hu/Riyadh_KSA_4050_2015, complete genome11181118100%0.0100%KT026456.1Select seq gb|KT026454.1|Middle East respiratory syndrome coronavirus strain Hu/Riyadh_KSA_4050_2015, complete genome11181118100%0.0100%KT026454.1Select seq gb|KT026453.1|Middle East respiratory syndrome coronavirus strain Hu/Riyadh_KSA_2959_2015, complete genome11181118100%0.0100%KT026453.1Select seq gb|KR011266.1|Middle East respiratory syndrome coronavirus strain Hu/Riyadh-KSA-2049/2015, complete genome11181118100%0.0100%KR011266.1Select seq gb|KR011265.1|Middle East respiratory syndrome coronavirus strain Hu/Riyadh-KSA-2466/2015, complete genome11181118100%0.0100%KR011265.1Select seq gb|KR011264.1|Middle East respiratory syndrome coronavirus strain Hu/Riyadh-KSA-2343/2015, complete genome11181118100%0.0100%KR011264.1Select seq gb|KR011263.1|Middle East respiratory syndrome coronavirus strain Hu/Riyadh-KSA-2345/2015, complete genome11181118100%0.0100%KR011263.1Select seq gb|KJ361503.1|Middle East respiratory syndrome coronavirus isolate Hu-France - FRA2_130569-2013_Isolate_Sanger, complete genome11181118100%0.0100%KJ361503.1Select seq gb|KJ361502.1|Middle East respiratory syndrome coronavirus isolate Hu-France - FRA2_130569-2013_InSpu_Sanger, complete genome11181118100%0.0100%KJ361502.1Select seq gb|KJ361501.1|Middle East respiratory syndrome coronavirus isolate Hu-France - FRA2_130569-2013_IS_HTS, complete genome11181118100%0.0100%KJ361501.1Select seq gb|KJ361500.1|Middle East respiratory syndrome coronavirus isolate Hu-France (UAE) - FRA1_1627-2013_BAL_Sanger, complete genome11181118100%0.0100%KJ361500.1Select seq gb|KJ361499.1|Middle East respiratory syndrome coronavirus isolate Hu-France (UAE) - FRA1_1627-2013_BAL_HTS, partial genome11181118100%0.0100%KJ361499.1Select seq gb|KP719933.1|Middle East respiratory syndrome coronavirus isolate Camel/UAE/D1209/2014, complete genome11181118100%0.0100%KP719933.1Select seq gb|KP719932.1|Middle East respiratory syndrome coronavirus isolate Camel/UAE/D1243.12/2014, complete genome11181118100%0.0100%KP719932.1Select seq gb|KP719931.1|Middle East respiratory syndrome coronavirus isolate Camel/UAE/D1339.2/2014, complete genome11181118100%0.0100%KP719931.1Select seq gb|KP719930.1|Middle East respiratory syndrome coronavirus isolate Camel/UAE/D1164.14/2014, complete genome11181118100%0.0100%KP719930.1Select seq gb|KP719928.1|Middle East respiratory syndrome coronavirus isolate Camel/UAE/D1164.10/2014, complete genome11181118100%0.0100%KP719928.1Select seq gb|KP719927.1|Middle East respiratory syndrome coronavirus isolate Camel/UAE/D1164.9/2014, complete genome11181118100%0.0100%KP719927.1Select seq gb|KM210278.1|Middle East respiratory syndrome coronavirus isolate England/3/2013, complete genome11181118100%0.0100%KM210278.1Select seq gb|KM210277.1|Middle East respiratory syndrome coronavirus isolate England/4/2013, complete genome11181118100%0.0100%KM210277.1Select seq gb|KP209310.1|Middle East respiratory syndrome coronavirus strain Abu Dhabi/Gayathi_UAE_2_2014, complete genome11181118100%0.0100%KP209310.1Select seq gb|KP209308.1|Middle East respiratory syndrome coronavirus strain Abu Dhabi_UAE_16_2014, complete genome11181118100%0.0100%KP209308.1Select seq gb|KM015348.1|Middle East respiratory syndrome coronavirus isolate England/2/2013, complete genome11181118100%0.0100%KM015348.1Select seq gb|KJ650098.1|Middle East respiratory syndrome coronavirus isolate Camel/Qatar_2_2014, complete genome11181118100%0.0100%KJ650098.1Select seq gb|KJ713299.1|Middle East respiratory syndrome coronavirus isolate KSA-CAMEL-376, complete genome11181118100%0.0100%KJ713299.1Select seq gb|KJ713297.1|Middle East respiratory syndrome coronavirus isolate KSA-CAMEL-503, complete genome11181118100%0.0100%KJ713297.1Select seq gb|KJ713296.1|Middle East respiratory syndrome coronavirus isolate KSA-CAMEL-378, complete genome11181118100%0.0100%KJ713296.1Select seq gb|KJ713295.1|Middle East respiratory syndrome coronavirus isolate KSA-CAMEL-505, complete genome11181118100%0.0100%KJ713295.1Select seq gb|KJ598495.1|Middle East respiratory syndrome coronavirus isolate Qatar_1_2013-2 ORF1a gene, partial cds11181118100%0.0100%KJ598495.1Select seq gb|KJ650297.1|Middle East respiratory syndrome coronavirus isolate KFU-HKU 1, complete genome11181118100%0.0100%KJ650297.1Select seq gb|KJ650296.1|Middle East respiratory syndrome coronavirus isolate KFU-HKU 19Dam, complete genome11181118100%0.0100%KJ650296.1Select seq gb|KJ650295.1|Middle East respiratory syndrome coronavirus isolate KFU-HKU 13, complete genome11181118100%0.0100%KJ650295.1Select seq gb|KJ156947.1|Middle East respiratory syndrome coronavirus isolate Riyadh_6b_2013 ORF1a gene, partial cds11181118100%0.0100%KJ156947.1Select seq gb|KJ156946.1|Middle East respiratory syndrome coronavirus isolate Riyadh_11a_2013 ORF1ab gene, partial cds; and ORF1a gene, complete cds11181118100%0.0100%KJ156946.1Select seq gb|KJ156937.1|Middle East respiratory syndrome coronavirus isolate Riyadh_7a_2013 ORF1ab gene, partial cds; and ORF1a gene, complete cds11181118100%0.0100%KJ156937.1Select seq gb|KJ156896.1|Middle East respiratory syndrome coronavirus isolate Taif_2a_2013 ORF1ab gene, partial cds; and ORF1a gene, complete cds11181118100%0.0100%KJ156896.1Select seq gb|KJ156895.1|Middle East respiratory syndrome coronavirus isolate Hafr-Al-Batin_4b_2013 ORF1ab and ORF1a genes, partial cds11181118100%0.0100%KJ156895.1Select seq gb|KJ156894.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_23b_2013 ORF1ab and ORF1a genes, partial cds11181118100%0.0100%KJ156894.1Select seq gb|KJ156942.1|Middle East respiratory syndrome coronavirus isolate Riyadh_8b_2013, partial genome11181118100%0.0100%KJ156942.1Select seq gb|KJ156934.1|Middle East respiratory syndrome coronavirus isolate Riyadh_14_2013, complete genome11181118100%0.0100%KJ156934.1Select seq gb|KJ156866.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_25_2013, complete genome11181118100%0.0100%KJ156866.1Select seq gb|KF961222.1|Middle East respiratory syndrome coronavirus isolate Qatar4, complete genome11181118100%0.0100%KF961222.1Select seq gb|KF961221.1|Middle East respiratory syndrome coronavirus isolate Qatar3, complete genome11181118100%0.0100%KF961221.1Select seq gb|KF745068.1|Middle East respiratory syndrome coronavirus isolate FRA/UAE, complete genome11181118100%0.0100%KF745068.1Select seq gb|KF600654.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_9b_2013, partial genome11181118100%0.0100%KF600654.1Select seq gb|KF600652.1|Middle East respiratory syndrome coronavirus isolate Riyadh_2_2012, complete genome11181118100%0.0100%KF600652.1Select seq gb|KF600651.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_18_2013, complete genome11181118100%0.0100%KF600651.1Select seq gb|KF600646.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_11b_2013, partial genome11181118100%0.0100%KF600646.1Select seq gb|KF600645.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_15_2013, complete genome11181118100%0.0100%KF600645.1Select seq gb|KF600644.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_16_2013, complete genome11181118100%0.0100%KF600644.1Select seq gb|KF600638.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_8b_2013, partial genome11181118100%0.0100%KF600638.1Select seq gb|KF600634.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_21_2013, complete genome11181118100%0.0100%KF600634.1Select seq gb|KF600628.1|Middle East respiratory syndrome coronavirus isolate Hafr-Al-Batin_1_2013, complete genome11181118100%0.0100%KF600628.1Select seq gb|KF600627.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_12_2013, complete genome11181118100%0.0100%KF600627.1Select seq gb|KF600615.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_14a_2013, partial genome11181118100%0.0100%KF600615.1Select seq gb|KF186565.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_3_2013, complete genome11181118100%0.0100%KF186565.1Select seq gb|KF186567.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_1_2013, complete genome11181118100%0.0100%KF186567.1Select seq gb|KF186566.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_2_2013, complete genome11181118100%0.0100%KF186566.1Select seq gb|KF186564.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_4_2013, complete genome11181118100%0.0100%KF186564.1Select seq gb|KP719929.1|Middle East respiratory syndrome coronavirus isolate Camel/UAE/D1164.11/2014, complete genome11141114100%0.099%KP719929.1Select seq gb|KP209306.1|Middle East respiratory syndrome coronavirus strain Abu Dhabi_UAE_8_2014, complete genome11141114100%0.099%KP209306.1Select seq gb|KP223131.1|Middle East respiratory syndrome coronavirus isolate Florida/USA-2_Saudi Arabia_2014, complete genome11121112100%0.099%KP223131.1Select seq gb|KP209313.1|Middle East respiratory syndrome coronavirus strain Abu Dhabi_UAE_26_2014, complete genome11121112100%0.099%KP209313.1Select seq gb|KP209309.1|Middle East respiratory syndrome coronavirus strain Abu Dhabi_UAE_30_2014, complete genome11121112100%0.099%KP209309.1Select seq gb|KP209307.1|Middle East respiratory syndrome coronavirus strain Abu Dhabi_UAE_18_2014, complete genome11121112100%0.099%KP209307.1Select seq gb|KM027262.1|Middle East respiratory syndrome coronavirus isolate Riyadh_2014KSA_683/KSA/2014, complete genome11121112100%0.099%KM027262.1Select seq gb|KM027261.1|Middle East respiratory syndrome coronavirus isolate Makkah_C9355/KSA/Makkah/2014-04-15, complete genome11121112100%0.099%KM027261.1Select seq gb|KM027260.1|Middle East respiratory syndrome coronavirus isolate Jeddah_C10306/KSA/2014-04-20, complete genome11121112100%0.099%KM027260.1Select seq gb|KM027259.1|Middle East respiratory syndrome coronavirus isolate Jeddah_C9055/KSA/2014-04-14, complete genome11121112100%0.099%KM027259.1Select seq gb|KM027258.1|Middle East respiratory syndrome coronavirus isolate Jeddah_C8826/KSA/2014-04-12, complete genome11121112100%0.099%KM027258.1Select seq gb|KM027257.1|Middle East respiratory syndrome coronavirus isolate Jeddah_C7770/KSA/2014-04-07, complete genome11121112100%0.099%KM027257.1Select seq gb|KM027256.1|Middle East respiratory syndrome coronavirus isolate Jeddah_C7569/KSA/2014-04-03, complete genome11121112100%0.099%KM027256.1Select seq gb|KM027255.1|Middle East respiratory syndrome coronavirus isolate Jeddah_C7149/KSA/2014-04-05, complete genome11121112100%0.099%KM027255.1Select seq gb|KJ829365.1|Middle East respiratory syndrome coronavirus strain Florida/USA-2_Saudi Arabia_2014, complete genome11121112100%0.099%KJ829365.1Select seq gb|KJ813439.1|Middle East respiratory syndrome coronavirus strain Indiana/USA-1_Saudi Arabia_2014, complete genome11121112100%0.099%KJ813439.1Select seq gb|KJ713298.1|Middle East respiratory syndrome coronavirus isolate KSA-CAMEL-363, complete genome11121112100%0.099%KJ713298.1Select seq gb|KJ573790.1|Middle East respiratory syndrome coronavirus ORF1a2 gene, partial cds11121112100%0.099%KJ573790.1Select seq gb|KJ156951.1|Middle East respiratory syndrome coronavirus isolate Hafr-Al-Batin_5a_2013 ORF1a gene, partial cds11121112100%0.099%KJ156951.1Select seq gb|KJ156941.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_26b_2013 ORF1ab gene, partial cds11121112100%0.099%KJ156941.1Select seq gb|KJ156943.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_27a_2013 ORF1ab gene, partial cds; and ORF1a gene, complete cds11121112100%0.099%KJ156943.1Select seq gb|KJ156926.1|Middle East respiratory syndrome coronavirus isolate Riyadh_12a_2013 ORF1ab gene, partial cds; and ORF1a gene, complete cds11121112100%0.099%KJ156926.1Select seq gb|KJ156918.1|Middle East respiratory syndrome coronavirus isolate Riyadh_17a_2013 ORF1ab gene, partial cds; and ORF1a gene, complete cds11121112100%0.099%KJ156918.1Select seq gb|KJ156891.1|Middle East respiratory syndrome coronavirus isolate Riyadh_10a_2013 ORF1ab gene, partial cds; and ORF1a gene, complete cds11121112100%0.099%KJ156891.1Select seq gb|KJ156888.1|Middle East respiratory syndrome coronavirus isolate Riyadh_13a_2013 ORF1ab gene, partial cds; and ORF1a gene, complete cds11121112100%0.099%KJ156888.1Select seq gb|KJ156916.1|Middle East respiratory syndrome coronavirus isolate Madinah_3b_2013, partial genome11121112100%0.099%KJ156916.1Select seq gb|KJ156910.1|Middle East respiratory syndrome coronavirus isolate Hafr-Al-Batin_2_2013, complete genome11121112100%0.099%KJ156910.1Select seq gb|KJ156874.1|Middle East respiratory syndrome coronavirus isolate Hafr-Al-Batin_6_2013, complete genome11121112100%0.099%KJ156874.1Select seq gb|KJ156869.1|Middle East respiratory syndrome coronavirus isolate Riyadh_9_2013, complete genome11121112100%0.099%KJ156869.1Select seq gb|KF600655.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_7a_2013, partial genome11121112100%0.099%KF600655.1Select seq gb|KF600647.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_17_2013, complete genome11121112100%0.099%KF600647.1Select seq gb|KF600632.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_19_2013, complete genome11121112100%0.099%KF600632.1Select seq gb|KF600630.1|Middle East respiratory syndrome coronavirus isolate Buraidah_1_2013, complete genome11121112100%0.099%KF600630.1Select seq gb|JX869059.2|Human betacoronavirus 2c EMC/2012, complete genome11121112100%0.099%JX869059.2 Report
November 9, 201510 yr Author comment_787 LOCUS KT828667 605 bp RNA linear VRL 21-OCT-2015 DEFINITION Middle East respiratory syndrome coronavirus isolate Abudhabi-5 ORF1a (ORF1a) gene, partial cds. ACCESSION KT828667 VERSION KT828667.1 GI:939129423 KEYWORDS . SOURCE Middle East respiratory syndrome coronavirus (MERS-CoV) ORGANISM Middle East respiratory syndrome coronavirus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; unclassified Betacoronavirus. REFERENCE 1 (bases 1 to 605) AUTHORS Eltahir,Y.M. TITLE Clinical Presentation of Middle East Respiratory Syndrome Corona Virus (MERS-Co V) field outbreak in a dromedary camel farm in Abu Dhabi Emirate, United Arab Emirates JOURNAL Unpublished REFERENCE 2 (bases 1 to 605) AUTHORS Eltahir,Y.M., Sayed,N.A. and AL Almuhairi,S.S. TITLE Direct Submission JOURNAL Submitted (26-SEP-2015) Abudhabi Food Control Authority, ABudhabi, Abudhabi, United Arab Emirates COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..605 /organism="Middle East respiratory syndrome coronavirus" /mol_type="genomic RNA" /isolate="Abudhabi-5" /isolation_source="nasal swab" /host="Camelus dromedarius" /db_xref="taxon:1335626" /country="United Arab Emirates" /collection_date="Jun-2014" gene <1..>605 /gene="ORF1a" CDS <1..>605 /gene="ORF1a" /codon_start=1 /product="ORF1a" /protein_id="ALJ54523.1" /db_xref="GI:939129424" /translation="VFVTTLTSDYTITVFVTVNLAKVCTYAIFAYSPQLTLVFPEVKM ILLLYTCLGFMCTCYFGVFSLLNLKLRAPMGVYDFKVSTQEFRFMTANNLTAPRNSWE AMALNFKLIGIGGTPCIKVAAMQSKLTDLKCTSVVLLSVLQQLHLEANSRAWAFCVKC HNDILAATDPSEAFEKFVSLFATLMTFSGNVDLDALASDIF" ORIGIN 1 gtttttgtca ctacactcac tagtgattat acgattacag tctttgttac tgtcaacctt 61 gcaaaagttt gcacttatgc catctttgct tactcaccac agcttacact tgtgtttccg 121 gaagtgaaga tgatactttt attatacaca tgtttaggtt tcatgtgtac ttgctatttt 181 ggtgtcttct ctcttttgaa ccttaagctt agagcaccta tgggtgtcta tgactttaag 241 gtctcaacac aagagttcag attcatgact gctaacaatc taactgcacc tagaaattct 301 tgggaggcta tggctctgaa ctttaagtta ataggtattg gcggtacacc ttgtataaag 361 gttgctgcta tgcagtctaa acttacagat cttaaatgca catctgtggt tctcctctct 421 gtgctccaac agttacactt agaggctaat agtagggcct gggctttctg tgttaaatgc 481 cataatgata tattggcagc aacagacccc agtgaggctt tcgagaaatt cgtaagtctc 541 tttgccactt taatgacttt ttctggtaat gtagatcttg atgcgttagc tagtgatatt 601 tttga Report
November 9, 201510 yr Author comment_788 LOCUS KT828668 605 bp RNA linear VRL 21-OCT-2015 DEFINITION Middle East respiratory syndrome coronavirus isolate Abudhabi-6 ORF1a (ORF1a) gene, partial cds. ACCESSION KT828668 VERSION KT828668.1 GI:939129425 KEYWORDS . SOURCE Middle East respiratory syndrome coronavirus (MERS-CoV) ORGANISM Middle East respiratory syndrome coronavirus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; unclassified Betacoronavirus. REFERENCE 1 (bases 1 to 605) AUTHORS Eltahir,Y.M. TITLE Clinical Presentation of Middle East Respiratory Syndrome Corona Virus (MERS-Co V) field outbreak in a dromedary camel farm in Abu Dhabi Emirate, United Arab Emirates JOURNAL Unpublished REFERENCE 2 (bases 1 to 605) AUTHORS Eltahir,Y.M., Sayed,N.A. and AL Almuhairi,S.S. TITLE Direct Submission JOURNAL Submitted (26-SEP-2015) Abudhabi Food Control Authority, ABudhabi, Abudhabi, United Arab Emirates COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..605 /organism="Middle East respiratory syndrome coronavirus" /mol_type="genomic RNA" /isolate="Abudhabi-6" /isolation_source="nasal swab" /host="Camelus dromedarius" /db_xref="taxon:1335626" /country="United Arab Emirates" /collection_date="Jun-2014" gene <1..>605 /gene="ORF1a" CDS <1..>605 /gene="ORF1a" /codon_start=1 /product="ORF1a" /protein_id="ALJ54524.1" /db_xref="GI:939129426" /translation="VFVTTLTSDYTITVFVTVNLAKVCTYAIFAYSPQLTLVFPEVKM ILLLYTCLGFMCTCYFGVFSLLNLKLRAPMGVYDFKVSTQEFRFMTANNLTAPRNSWE AMALNFKLIGIGGTPCIKVAAMQSKLTDLKCTSVVLLSVLQQLHLEANSRAWAFCVKC HNDILAATDPSEAFEKFVSLFATLMTFSGNVDLDALASDIF" ORIGIN 1 gtttttgtca ctacactcac tagtgattat acgattacag tctttgttac tgtcaacctt 61 gcaaaagttt gcacttatgc catctttgct tactcaccac agcttacact tgtgtttccg 121 gaagtgaaga tgatactttt attatacaca tgtttaggtt tcatgtgtac ttgctatttt 181 ggtgtcttct ctcttttgaa ccttaagctt agagcaccta tgggtgtcta tgactttaag 241 gtctcaacac aagagttcag attcatgact gctaacaatc taactgcacc tagaaattct 301 tgggaggcta tggctctgaa ctttaagtta ataggtattg gcggtacacc ttgtataaag 361 gttgctgcta tgcagtctaa acttacagat cttaaatgca catctgtggt tctcctctct 421 gtgctccaac agttacactt agaggctaat agtagggcct gggctttctg tgttaaatgc 481 cataatgata tattggcagc aacagacccc agtgaggctt tcgagaaatt cgtaagtctc 541 tttgccactt taatgacttt ttctggtaat gtagatcttg atgcgttagc tagtgatatt 601 tttga Report
November 9, 201510 yr Author comment_789 LOCUS KT828669 605 bp RNA linear VRL 21-OCT-2015 DEFINITION Middle East respiratory syndrome coronavirus isolate Abudhabi-9 ORF1a (ORF1a) gene, partial cds. ACCESSION KT828669 VERSION KT828669.1 GI:939129427 KEYWORDS . SOURCE Middle East respiratory syndrome coronavirus (MERS-CoV) ORGANISM Middle East respiratory syndrome coronavirus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; unclassified Betacoronavirus. REFERENCE 1 (bases 1 to 605) AUTHORS Eltahir,Y.M. TITLE Clinical Presentation of Middle East Respiratory Syndrome Corona Virus (MERS-Co V) field outbreak in a dromedary camel farm in Abu Dhabi Emirate, United Arab Emirates JOURNAL Unpublished REFERENCE 2 (bases 1 to 605) AUTHORS Eltahir,Y.M., Sayed,N.A. and AL Almuhairi,S.S. TITLE Direct Submission JOURNAL Submitted (26-SEP-2015) Abudhabi Food Control Authority, ABudhabi, Abudhabi, United Arab Emirates COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..605 /organism="Middle East respiratory syndrome coronavirus" /mol_type="genomic RNA" /isolate="Abudhabi-9" /isolation_source="nasal swab" /host="Camelus dromedarius" /db_xref="taxon:1335626" /country="United Arab Emirates" /collection_date="Jun-2014" gene <1..>605 /gene="ORF1a" CDS <1..>605 /gene="ORF1a" /codon_start=1 /product="ORF1a" /protein_id="ALJ54525.1" /db_xref="GI:939129428" /translation="VFVTTLTSDYTITVFVTVNLAKVCTYAIFAYSPQLTLVFPEVKM ILLLYTCLGFMCTCYFGVFSLLNLKLRAPMGVYDFKVSTQEFRFMTANNLTAPRNSWE AMALNFKLIGIGGTPCIKVAAMQSKLTDLKCTSVVLLSVLQQLHLEANSRAWAFCVKC HNDILAATDPSEAFEKFVSLFATLMTFSGNVDLDALASDIF" ORIGIN 1 gtttttgtca ctacactcac tagtgattat acgattacag tctttgttac tgtcaacctt 61 gcaaaagttt gcacttatgc catctttgct tactcaccac agcttacact tgtgtttccg 121 gaagtgaaga tgatactttt attatacaca tgtttaggtt tcatgtgtac ttgctatttt 181 ggtgtcttct ctcttttgaa ccttaagctt agagcaccta tgggtgtcta tgactttaag 241 gtctcaacac aagagttcag attcatgact gctaacaatc taactgcacc tagaaattct 301 tgggaggcta tggctctgaa ctttaagtta ataggtattg gcggtacacc ttgtataaag 361 gttgctgcta tgcagtctaa acttacagat cttaaatgca catctgtggt tctcctctct 421 gtgctccaac agttacactt agaggctaat agtagggcct gggctttctg tgttaaatgc 481 cataatgata tattggcagc aacagacccc agtgaggctt tcgagaaatt cgtaagtctc 541 tttgccactt taatgacttt ttctggtaat gtagatcttg atgcgttagc tagtgatatt 601 tttga Report
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