niman Posted January 1, 2021 Report Posted January 1, 2021 CDC released 29 COVID sequences today identified by S dropout screen. 22 had the two deletions that encode positions 69 and 70 in the Spike protein. 4 of the 22 were UK Variant B.1.1.7 (3 CA and 1 FL).
niman Posted January 1, 2021 Author Report Posted January 1, 2021 Virus name Passage details/history Accession ID Collection date Submission Date Length Host Location Originating lab Submitting lab Virus name Passage details/history Accession ID Collection date Submission Date Length Host Location Originating lab Submitting lab hCoV-19/USA/FL-CDC-STM-P057/2020 Original EPI_ISL_755618 2020-12-19 2021-01-01 29,843 Human North America / USA / Florida Helix/Illumina Genomics and Discovery, Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention hCoV-19/USA/MA-CDC-STM-P056/2020 Original EPI_ISL_755617 2020-12-19 2021-01-01 29,885 Human North America / USA / Massachusetts Helix/Illumina Genomics and Discovery, Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention hCoV-19/USA/IN-CDC-STM-P053/2020 Original EPI_ISL_755616 2020-12-18 2021-01-01 29,859 Human North America / USA / Indiana Helix/Illumina Genomics and Discovery, Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention hCoV-19/USA/IN-CDC-STM-P051/2020 Original EPI_ISL_755615 2020-12-20 2021-01-01 29,845 Human North America / USA / Indiana Helix/Illumina Genomics and Discovery, Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention hCoV-19/USA/FL-CDC-STM-P038/2020 Original EPI_ISL_755614 2020-12-20 2021-01-01 29,859 Human North America / USA / Florida Helix/Illumina Genomics and Discovery, Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention hCoV-19/USA/CA-CDC-STM-P034/2020 Original EPI_ISL_755613 2020-12-21 2021-01-01 29,854 Human North America / USA / California Helix/Illumina Genomics and Discovery, Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention hCoV-19/USA/FL-CDC-STM-P030/2020 Original EPI_ISL_755612 2020-12-19 2021-01-01 29,845 Human North America / USA / Florida Helix/Illumina Genomics and Discovery, Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention hCoV-19/USA/MA-CDC-STM-P021/2020 Original EPI_ISL_755611 2020-12-19 2021-01-01 29,874 Human North America / USA / Massachusetts Helix/Illumina Genomics and Discovery, Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention hCoV-19/USA/PA-CDC-STM-P020/2020 Original EPI_ISL_755610 2020-12-19 2021-01-01 29,848 Human North America / USA / Pennsylvania Helix/Illumina Genomics and Discovery, Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention hCoV-19/USA/MA-CDC-STM-P018/2020 Original EPI_ISL_755609 2020-12-19 2021-01-01 29,849 Human North America / USA / Massachusetts Helix/Illumina Genomics and Discovery, Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention hCoV-19/USA/MA-CDC-STM-P016/2020 Original EPI_ISL_755608 2020-12-20 2021-01-01 29,852 Human North America / USA / Massachusetts Helix/Illumina Genomics and Discovery, Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention hCoV-19/USA/FL-CDC-STM-P015/2020 Original EPI_ISL_755607 2020-12-20 2021-01-01 29,876 Human North America / USA / Florida Helix/Illumina Genomics and Discovery, Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention hCoV-19/USA/FL-CDC-STM-P014/2020 Original EPI_ISL_755606 2020-12-19 2021-01-01 29,867 Human North America / USA / Florida Helix/Illumina Genomics and Discovery, Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention hCoV-19/USA/FL-CDC-STM-P013/2020 Original EPI_ISL_755605 2020-12-20 2021-01-01 29,843 Human North America / USA / Florida Helix/Illumina Genomics and Discovery, Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention hCoV-19/USA/FL-CDC-STM-P011/2020 Original EPI_ISL_755604 2020-12-20 2021-01-01 29,877 Human North America / USA / Florida Helix/Illumina Genomics and Discovery, Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention hCoV-19/USA/MA-CDC-STM-P009/2020 Original EPI_ISL_755603 2020-12-19 2021-01-01 29,868 Human North America / USA / Massachusetts Helix/Illumina Genomics and Discovery, Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention hCoV-19/USA/CA-CDC-STM-P008/2020 Original EPI_ISL_755602 2020-12-21 2021-01-01 29,873 Human North America / USA / California Helix/Illumina Genomics and Discovery, Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention hCoV-19/USA/FL-CDC-STM-P007/2020 Original EPI_ISL_755601 2020-12-19 2021-01-01 29,862 Human North America / USA / Florida Helix/Illumina Genomics and Discovery, Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention hCoV-19/USA/MA-CDC-STM-P006/2020 Original EPI_ISL_755600 2020-12-19 2021-01-01 29,854 Human North America / USA / Massachusetts Helix/Illumina Genomics and Discovery, Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention hCoV-19/USA/FL-CDC-STM-P005/2020 Original EPI_ISL_755599 2020-12-19 2021-01-01 29,873 Human North America / USA / Florida Helix/Illumina Genomics and Discovery, Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention hCoV-19/USA/FL-CDC-STM-P004/2020 Original EPI_ISL_755598 2020-12-19 2021-01-01 29,850 Human North America / USA / Florida Helix/Illumina Genomics and Discovery, Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention hCoV-19/USA/CA-CDC-STM-P002/2020 Original EPI_ISL_755597 2020-12-21 2021-01-01 29,876 Human North America / USA / California Helix/Illumina Genomics and Discovery, Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention hCoV-19/USA/CA-CDC-STM-P025/2020 Original EPI_ISL_755596 2020-12-20 2021-01-01 29,837 Human North America / USA / California Helix/Illumina Genomics and Discovery, Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention hCoV-19/USA/CA-CDC-STM-P019/2020 Original EPI_ISL_755595 2020-12-21 2021-01-01 29,812 Human North America / USA / California Helix/Illumina Genomics and Discovery, Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention hCoV-19/USA/CA-CDC-STM-P017/2020 Original EPI_ISL_755594 2020-12-20 2021-01-01 29,835 Human North America / USA / California Helix/Illumina Genomics and Discovery, Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention hCoV-19/USA/FL-CDC-STM-P012/2020 Original EPI_ISL_755593 2020-12-19 2021-01-01 29,861 Human North America / USA / Florida Helix/Illumina Genomics and Discovery, Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention hCoV-19/USA/FL-CDC-STM-P058/2020 Original EPI_ISL_755592 2020-12-19 2021-01-01 29,842 Human North America / USA / Florida Helix/Illumina Genomics and Discovery, Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention hCoV-19/USA/PA-CDC-STM-P010/2020 Original EPI_ISL_755591 2020-12-20 2021-01-01 29,867 Human North America / USA / Pennsylvania Helix/Illumina Genomics and Discovery, Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention hCoV-19/USA/MA-CDC-STM-P003/2020 Original EPI_ISL_755590 2020-12-20 2021-01-01 29,873 Human North America / USA / Massachusetts Helix/Illumina Genomics and Discovery, Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention
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