niman Posted August 16, 2016 Report Share Posted August 16, 2016 Aix Marseille Universite has released 9 full Zika sequences from the 2013/2014 Zika outbreak in French Polynesia. Link to comment Share on other sites More sharing options...
niman Posted August 16, 2016 Author Report Share Posted August 16, 2016 Zika virus isolate 1_0038_PF polyprotein gene, complete cds 325 325 100% 1e-85 100% KX447517.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 325 325 100% 1e-85 100% KX447516.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 325 325 100% 1e-85 100% KX447515.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 325 325 100% 1e-85 100% KX447514.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 325 325 100% 1e-85 100% KX447513.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 325 325 100% 1e-85 100% KX447512.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 325 325 100% 1e-85 100% KX447511.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 325 325 100% 1e-85 100% KX447510.1 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 325 325 100% 1e-85 100% KX447509.1 Link to comment Share on other sites More sharing options...
niman Posted August 16, 2016 Author Report Share Posted August 16, 2016 LOCUS KX447517 10654 bp RNA linear VRL 14-AUG-2016 DEFINITION Zika virus isolate 1_0038_PF polyprotein gene, complete cds. ACCESSION KX447517 VERSION KX447517.1 GI:1041521226 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10654) AUTHORS Nougairede,A., Bouazza,N., Piorkowski,G., Baronti,C., Musso,D. and De Lamballerie,X. TITLE Zika virus outbreak in French Polynesia, 2013-2014 JOURNAL Unpublished REFERENCE 2 (bases 1 to 10654) AUTHORS Nougairede,A., Bouazza,N., Piorkowski,G., Baronti,C., Musso,D. and De Lamballerie,X. TITLE Direct Submission JOURNAL Submitted (28-JUN-2016) Umr190, Aix Marseille Universite, 27 Bd Jean Moulin, Marseille 13005, France COMMENT ##Assembly-Data-START## Assembly Method :: CLC Genomics Workbench v. 8.5.1 Sequencing Technology :: IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10654 /organism="Zika virus" /mol_type="genomic RNA" /isolate="1_0038_PF" /isolation_source="serum" /host="Homo sapiens" /db_xref="taxon:64320" /country="French Polynesia" /collection_date="Jan-2014" /note="Vero cells; one passage; genotype: Asian" CDS 85..10356 /codon_start=1 /product="polyprotein" /protein_id="ANO46309.1" /db_xref="GI:1041521227" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEAALGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQTLIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSMVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPMLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST QVRYLGEEGSTPGVL" ORIGIN 1 actgcgacag ttcgagtttg aagcgaaagc tagcaacagt atcaacaggt tttattttgg 61 atttggaaac gagagtttct ggtcatgaaa aacccaaaaa agaaatccgg aggattccgg 121 attgtcaata tgctaaaacg cggagtagcc cgtgtgagcc cctttggggg cttgaagagg 181 ctgccagccg gacttctgct gggtcatggg cccatcagga tggtcttggc gattctagcc 241 tttttgagat tcacggcaat caagccatca ctgggtctca tcaatagatg gggttcagtg 301 gggaaaaaag aggctatgga aataataaag aagttcaaga aagatctggc tgccatgctg 361 agaataatca atgccaggaa ggagaagaag agacgaggcg cagatactag tgtcggaatt 421 gttggcctcc tgctgaccac agctatggca gcggaggtca ctagacgtgg gagtgcatac 481 tatatgtact tggacagaaa cgatgctggg gaggccatat cttttccaac cacattgggg 541 atgaataagt gttatataca gatcatggat cttggacaca tgtgcgatgc caccatgagc 601 tatgaatgcc ctatgctgga tgagggggtg gaaccagatg acgtcgattg ttggtgcaat 661 acgacgtcaa cttgggttgt gtacggaacc tgccatcaca aaaaaggtga agcacggaga 721 tctagaagag ctgtgacgct cccctcccat tccactagga agctgcaaac gcggtcgcaa 781 acctggttgg aatcaagaga atacacaaag cacttgatta gagtcgaaaa ttggatattc 841 aggaaccctg gcttcgcgtt agcagcagct gccatcgctt ggcttttggg aagctcaacg 901 agccaaaaag tcatatactt ggtcatgata ctgctgattg ccccggcata cagcatcagg 961 tgcataggag tcagcaatag ggactttgtg gaaggtatgt caggtgggac ttgggttgat 1021 gttgtcttgg aacatggagg ttgtgtcacc gtaatggcac aggacaaacc gactgtcgac 1081 atagagctgg ttacaacaac agtcagcaac atggcggagg taagatccta ctgctatgag 1141 gcatcaatat cggacatggc ttcggacagc cgctgcccaa cacaaggtga agcctacctt 1201 gacaagcaat cagacactca atatgtctgc aaaagaacgt tagtggacag aggctgggga 1261 aatggatgtg gactttttgg caaagggagc ctggtgacat gcgctaagtt tgcatgctcc 1321 aagaaaatga ccgggaagag catccagcca gagaatctgg agtaccggat aatgctgtca 1381 gttcatggct cccagcacag tgggatgatc gttaatgaca caggacatga aactgatgag 1441 aatagagcga aggttgagat aacgcccaat tcaccaagag ccgaagccgc cctggggggt 1501 tttggaagcc taggacttga ttgtgaaccg aggacaggcc ttgacttttc agatttgtat 1561 tacttgacta tgaataacaa gcactggttg gttcacaagg agtggttcca cgacattcca 1621 ttaccttggc acgctggggc agacaccgga actccacact ggaacaacaa agaagcactg 1681 gtagagttca aggacgcaca tgccaaaagg caaactgtcg tggttctagg gagtcaagaa 1741 ggagcagttc acacggccct tgctggagct ctggaggctg agatggatgg tgcaaaggga 1801 aggctgtcct ctggccactt gaaatgtcgc ctgaaaatgg ataaacttag attgaagggc 1861 gtgtcatact ccttgtgtac tgcagcgttc acattcacca agatcccggc tgaaacactg 1921 cacgggacag tcacagtgga ggtacagtac gcagggacag atggaccttg caaggttcca 1981 gctcagatgg cggtggacat gcaaactctg accccagttg ggaggttgat aaccgctaac 2041 cctgtaatca ctgaaagcac tgagaactct aagatgatgc tggaacttga tccaccattt 2101 ggggactctt acattgtcat aggagtcggg gagaagaaga tcacccacca ctggcacagg 2161 agtggcagca ccattggaaa agcatttgaa gccactgtga gaggtgccaa gagaatggca 2221 gtcttgggag acacagcctg ggactttgga tcagttggag gcgctctcaa ctcattgggc 2281 aagggcatcc atcaaatttt tggagcagct ttcaaatcat tgtttggagg aatgtcctgg 2341 ttctcacaaa ctctcattgg aacgttgctg atgtggttgg gtctgaacac aaagaatgga 2401 tctatttccc ttatgtgctt ggccttaggg ggagtgttga tcttcttatc cacagccgtc 2461 tctgctgatg tggggtgctc ggtggacttc tcaaagaagg agacgagatg cggtacaggg 2521 gtgttcgtct ataacgacgt tgaagcctgg agggacaggt acaagtacca tcctgactcc 2581 ccccgtagat tggcagcagc agtcaagcaa gcctgggaag atggtatctg tgggatctcc 2641 tctgtttcaa gaatggaaaa catcatgtgg agatcagtag aaggggagct caacgcaatc 2701 ctggaagaga atggagttca actgacggtc gttgtgggat ctgtaaaaaa ccccatgtgg 2761 agaggtccac agagattgcc cgtgcctgtg aacgagctgc cccacggctg gaaggcttgg 2821 gggaaatcgt acttcgtcag agcagcaaag acaaataaca gctttgtcgt ggatggtgac 2881 acactgaagg aatgcccact caaacataga gcatggaaca gctttcttgt ggaggatcat 2941 gggttcgggg tatttcacac tagtgtctgg ctcaaggtta gagaagatta ttcattagag 3001 tgtgatccag ccgttattgg aacagctgtt aagggaaagg aggctgtaca cagtgatcta 3061 ggctactgga ttgagagtga gaagaatgac acatggaggc tgaagagggc ccatctgatc 3121 gagatgaaaa catgtgaatg gccaaagtcc cacacattgt ggacagatgg aatagaagag 3181 agtgatctga tcatacccaa gtctttagct gggccactca gccatcacaa taccagagag 3241 ggctacagga cccaaatgaa agggccatgg cacagtgaag agcttgaaat tcggtttgag 3301 gaatgcccag gcactaaggt ccacgtggag gaaacatgcg gaacaagagg accatctctg 3361 agatcaacca ctgcaagcgg aagggtgatc gaggaatggt gctgcaggga gtgcacaatg 3421 cccccactgt cgttccgggc taaagatggc tgttggtatg gaatggagat aaggcccagg 3481 aaagaaccag aaagtaactt agtaaggtca atggtgactg caggatcaac tgatcacatg 3541 gatcacttct cccttggagt gcttgtgatt ctgctcatgg tgcaggaagg gctgaagaag 3601 agaatgacca caaagatcat cataagcaca tcaatggcag tgctggtagc tatgatcctg 3661 ggaggatttt caatgagtga cctggctaag cttgcaatct tgatgggtgc caccttcgct 3721 gaaatgaaca ctggaggaga tgtagctcat ctggcgctga tagcggcatt caaagtcaga 3781 ccagcgttgc tggtatcttt catcttcaga gctaattgga caccccgtga aagcatgctg 3841 ctggccttgg cctcgtgtct tttgcaaact gcgatctccg ccttggaagg cgacctgatg 3901 gttctcatca atggttttgc tttggcctgg ttggcaatac gagcgatggt tgttccacgc 3961 actgataaca tcaccttggc aatcctggct gctctgacac cactggcccg gggcacactg 4021 cttgtggcgt ggagagcagg ccttgctact tgcggggggt ttatgctcct ctctctgaag 4081 ggaaaaggca gtgtgaagaa gaacttacca tttgtcatgg ccctgggact aaccgctgtg 4141 aggctggtcg accccatcaa cgtggtggga ctgctgttgc tcacaaggag tgggaagcgg 4201 agctggcccc ctagcgaagt actcacagct gttggcctga tatgcgcatt ggctggaggg 4261 ttcgccaagg cagatataga gatggctggg cccatggccg cggtcggtct gctaattgtc 4321 agttacgtgg tctcaggaaa gagtgtggac atgtacattg aaagagcagg tgacatcaca 4381 tgggaaaaag atgcggaagt cactggaaac agtccccggc tcgatgtggc gctagatgag 4441 agtggtgatt tctccctggt ggaggatgac ggtcccccca tgagagagat catactcaag 4501 gtggtcctga tgaccatctg tggcatgaac ccaatagcca taccctttgc agctggagcg 4561 tggtacgtat acgtgaagac tggaaaaagg agtggtgctc tatgggatgt gcctgctccc 4621 aaggaagtaa aaaaggggga gaccacagat ggagtgtaca gagtaatgac tcgtagactg 4681 ctaggttcaa cacaagttgg agtgggagtt atgcaagagg gggtctttca cactatgtgg 4741 cacgtcacaa aaggatccgc gctgagaagc ggtgaaggga gacttgatcc atactgggga 4801 gatgtcaagc aggatctggt gtcatactgt ggtccatgga agctagatgc cgcctgggac 4861 gggcacagcg aggtgcagct cttggccgtg ccccccggag agagagcgag gaacatccag 4921 actctgcccg gaatatttaa gacaaaggat ggggacattg gagcggttgc gctggactac 4981 ccagcaggaa cttcaggatc tccaatccta gacaagtgtg ggagagtgat aggactttat 5041 ggcaatgggg tcgtgatcaa aaatgggagt tatgttagtg ccatcaccca agggaggagg 5101 gaggaagaga ctcctgttga gtgcttcgag ccttcgatgc tgaagaagaa gcagctaact 5161 gtcttagact tgcatcctgg agctgggaaa accaggagag ttcttcctga aatagtccgt 5221 gaagccataa aaacaagact ccgtactgtg atcttagctc caaccagggt tgtcgctgct 5281 gaaatggagg aagcccttag agggcttcca gtgcgttata tgacaacagc agtcaatgtc 5341 acccattctg gaacagaaat cgtcgactta atgtgccatg ccaccttcac ttcacgtcta 5401 ctacagccaa tcagagtccc caactataat ctgtatatta tggatgaggc ccacttcaca 5461 gatccctcaa gtatagcagc aagaggatac atttcaacaa gggttgagat gggcgaggcg 5521 gctgccatct tcatgaccgc cacgccacca ggaacccgtg acgcatttcc ggactccaac 5581 tcaccaatta tggacaccga agtggaagtc ccagagagag cctggagctc aggctttgat 5641 tgggtgacgg atcattctgg aaaaacagtt tggtttgttc caagcgtgag gaacggcaat 5701 gagatcgcag cttgtctgac aaaggctgga aaacgggtca tacagctcag cagaaagact 5761 tttgagacag agttccagaa aacaaaacat caagagtggg actttgtcgt gacaactgac 5821 atttcagaga tgggcgccaa ctttaaagct gaccgtgtca tagattccag gagatgccta 5881 aagccggtca tacttgatgg cgagagagtc attctggctg gacccatgcc tgtcacacat 5941 gccagcgctg cccagaggag ggggcgcata ggcaggaatc ccaacaaacc tggagatgag 6001 tatctgtatg gaggtgggtg cgcagagact gacgaagacc atgcacactg gcttgaagca 6061 agaatgctcc ttgacaatat ttacctccaa gatggcctca tagcctcgct ctatcgacct 6121 gaggccgaca aagtagcagc cattgaggga gagttcaagc ttaggacgga gcaaaggaag 6181 acctttgtgg aactcatgaa aagaggagat cttcctgttt ggctggccta tcaggttgca 6241 tctgccggaa taacctacac agatagaaga tggtgctttg atggcacgac caacaacacc 6301 ataatggaag acagtgtgcc ggcagaggtg tggaccagac acggagagaa aagagtgctc 6361 aaaccgaggt ggatggacgc cagagtttgt tcagatcatg cggccctgaa gtcattcaag 6421 gagtttgccg ctgggaaaag aggagcggct tttggagtga tggaagccct gggaacactg 6481 ccaggacaca tgacagagag attccaggaa gccattgaca acctcgctgt gctcatgcgg 6541 gcagagactg gaagcaggcc ttacaaagcc gcggcggccc aattgccgga gaccctagag 6601 accattatgc ttttggggtt gctgggaaca gtctcgctgg gaatcttttt cgtcttgatg 6661 aggaacaagg gcatagggaa gatgggcttt ggaatggtga ctcttggggc cagcgcatgg 6721 ctcatgtggc tctcggaaat tgagccagcc agaattgcat gtgtcctcat tgttgtgttc 6781 ctattgctgg tggtgctcat acctgagcca gaaaagcaaa gatctcccca ggacaaccaa 6841 atggcaatca tcatcatggt agcagtaggt cttctgggct tgattaccgc caatgaactc 6901 ggatggttgg agagaacaaa gagtgaccta agccatctaa tgggaaggag agaggagggg 6961 gcaaccatag gattctcaat ggacattgac ctgcggccag cctcagcttg ggccatctat 7021 gctgccttga caaccttcat taccccagcc gtccaacatg cagtgaccac ttcatacaac 7081 aactactcct taatggcgat ggccacgcaa gctggagtgt tgtttggtat gggcaaaggg 7141 atgccattct acgcatggga ctttggagtc ccgctgctaa tgataggttg ctactcacaa 7201 ttaacacccc tgaccctaat agtggccatc attttgctcg tggcgcacta catgtacttg 7261 atcccagggc tgcaggcagc agctgcgcgt gctgcccaga agagaacggc agctggcatc 7321 atgaagaacc ctgttgtgga tggaatagtg gtgactgaca ttgacacaat gacaattgac 7381 ccccaagtgg agaaaaagat gggacaggtg ctactcatag cagtagccgt ctccagcgcc 7441 atactgtcgc ggaccgcctg ggggtggggg gaggctgggg ccctgatcac agctgcaact 7501 tccactttgt gggaaggctc tccgaacaag tactggaact cctctacagc cacttcactg 7561 tgtaacattt ttaggggaag ttacttggct ggagcttctc taatctacac agtaacaaga 7621 aacgctggct tggtcaagag acgtgggggt ggaacaggag agaccctggg agagaaatgg 7681 aaggcccgct tgaaccagat gtcggccctg gagttctact cctacaaaaa gtcaggcatc 7741 accgaggtgt gcagagaaga ggcccgccgc gccctcaagg acggtgtggc aacgggaggc 7801 catgctgtgt cccgaggaag tgcaaagctg agatggttgg tggagcgggg atacctgcag 7861 ccctatggaa aggtcattga tcttggatgt ggcagagggg gctggagtta ctacgccgcc 7921 accatccgca aagttcaaga agtgaaagga tacacaaaag gaggccctgg tcatgaagaa 7981 cccatgttgg tgcaaagcta tgggtggaac atagtccgtc ttaagagtgg ggtggacgtc 8041 tttcatatgg cggctgagcc gtgtgacacg ttgctgtgtg acataggtga gtcatcatct 8101 agtcctgaag tggaagaagc acggacgctc agagtcctct ccatggtggg ggattggctt 8161 gaaaaaagac caggagcctt ttgtataaaa gtgttgtgcc catacaccag cactatgatg 8221 gaaaccctgg agcgactgca gcgtaggtat gggggaggac tggtcagagt gccactctcc 8281 cgcaactcta cacatgagat gtactgggtc tctggagcga aaagcaacac cataaaaagt 8341 gtgtccacca cgagccagct cctcttgggg cgcatggacg ggcccaggag gccagtgaaa 8401 tatgaggagg atgtgaatct cggctctggc acgcgggctg tggtaagctg cgctgaagct 8461 cccaacatga agatcattgg taaccgcatt gaaaggatcc gcagtgagca cgcggaaacg 8521 tggttctttg acgagaacca cccatatagg acatgggctt accatggaag ctatgaggcc 8581 cccacacaag ggtcagcgtc ctctctaata aacggggttg tcaggctcct gtcaaaaccc 8641 tgggatgtgg tgactggagt cacaggaata gccatgaccg acaccacacc gtatggtcag 8701 caaagagttt tcaaggaaaa agtggacact agggtgccag acccccaaga aggcactcgt 8761 caggttatga gcatggtctc ttcctggttg tggaaagagc taggcaaaca caaacggcca 8821 cgagtctgta ccaaagaaga gttcatcaac aaggttcgta gcaatgcagc attaggggca 8881 atatttgaag aggaaaaaga gtggaagact gcagtggaag ctgtgaacga tccaaggttc 8941 tgggctctag tggacaagga aagagagcac cacctgagag gagagtgcca gagttgtgtg 9001 tacaacatga tgggaaaaag agaaaagaaa caaggggaat ttggaaaggc caagggcagc 9061 cgcgccatct ggtatatgtg gctaggggct agatttctag agttcgaagc ccttggattc 9121 ttgaacgagg atcactggat ggggagagag aactcaggag gtggtgttga agggctggga 9181 ttacaaagac tcggatatgt cctagaagag atgagtcgca taccaggagg aaggatgtat 9241 gcagatgaca ctgctggctg ggacacccgc atcagcaggt ttgatctgga gaatgaagct 9301 ctaatcacca accaaatgga gaaagggcac agggccttgg cgttggccat aatcaagtac 9361 acataccaaa acaaagtggt aaaggtcctt agaccagctg aaaaagggaa gacagttatg 9421 gacattattt cgagacaaga ccaaaggggg agcggacaag ttgtcactta cgctcttaac 9481 acatttacca acctagtggt gcaactcatt cggaatatgg aggctgagga agttctagag 9541 atgcaagact tgtggctgct gcggaggtca gagaaagtga ccaactggtt gcagagcaac 9601 ggatgggata ggctcaaacg aatggcagtc agtggagatg attgcgttgt gaagccaatt 9661 gatgataggt ttgcacatgc cctcaggttc ttgaatgata tgggaaaagt taggaaggac 9721 acacaagagt ggaaaccctc aactggatgg gacaactggg aagaagttcc gttttgctcc 9781 caccacttca acaagctcca tctcaaggac gggaggtcca ttgtggttcc ctgccgccac 9841 caagatgaac tgattggccg ggcccgcgtc tctccagggg cgggatggag catccgggag 9901 actgcttgcc tagcaaaatc atatgcgcaa atgtggcagc tcctttattt ccacagaagg 9961 gacctccgac tgatggccaa tgccatttgt tcatctgtgc cagttgactg ggttccaact 10021 gggagaacta cctggtcaat ccatggaaag ggagaatgga tgaccactga agacatgctt 10081 gtggtgtgga acagagtgtg gattgaggag aacgaccaca tggaagacaa gaccccagtt 10141 acgaaatgga cagacattcc ctatttggga aaaagggaag acttgtggtg tggatctctc 10201 atagggcaca gaccgcgcac cacctgggct gagaacatta aaaacacagt caacatggtg 10261 cgcaggatca taggtgatga agaaaagtac atggactacc tatccaccca agttcgctac 10321 ttgggtgaag aagggtctac acctggagtg ctgtaagcac caatcttagt gttgtcaggc 10381 ctgctagtca gccacagctt ggggaaagct gtgcagcctg tgaccccccc aggagaagct 10441 gggaaaccaa gcctatagtc aggccgagaa cgccatggca cggaagaagc catgctgcct 10501 gtgagcccct cagaggacac tgagtcaaaa aaccccacgc gcttggaggc gcaggatggg 10561 aaaagaaggt ggcgaccttc cccacccttc aatctggggc ctgaactgga gatcagctgt 10621 ggatctccag aagagggact agtggttaga ggag Link to comment Share on other sites More sharing options...
niman Posted August 16, 2016 Author Report Share Posted August 16, 2016 Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 18525 18525 100% 0.0 100% KX447517.1 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 18447 18447 100% 0.0 99% KX447509.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 18444 18444 100% 0.0 99% KX447512.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 18444 18444 100% 0.0 99% KX369547.1 Select seq gb|KJ776791.1| Zika virus strain H/PF/2013 polyprotein gene, complete cds 18444 18444 100% 0.0 99% KJ776791.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 18438 18438 100% 0.0 99% KX447515.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 18435 18435 100% 0.0 99% KX447514.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 18435 18435 100% 0.0 99% KX447513.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 18429 18429 100% 0.0 99% KX447516.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 18429 18429 100% 0.0 99% KX447511.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 18426 18426 100% 0.0 99% KX447510.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 18399 18399 100% 0.0 99% KU509998.3 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 18381 18381 100% 0.0 99% KX280026.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 18381 18381 100% 0.0 99% KX051563.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 18375 18375 100% 0.0 99% KU991811.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 18375 18375 100% 0.0 99% KU707826.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 18375 18375 100% 0.0 99% KU365779.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 18375 18375 100% 0.0 99% KU321639.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 18366 18366 100% 0.0 99% KU729218.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 18363 18363 100% 0.0 99% KX262887.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 18363 18363 100% 0.0 99% KX197192.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 18363 18363 100% 0.0 99% KU365780.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 18357 18357 100% 0.0 99% KX117076.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 18357 18357 100% 0.0 99% KU365777.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 18354 18354 100% 0.0 99% KU758877.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 18354 18354 100% 0.0 99% KX247646.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 18354 18354 100% 0.0 99% KX198135.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 18354 18354 100% 0.0 99% KX156776.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 18354 18354 100% 0.0 99% KU926309.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 18350 18350 99% 0.0 99% KU497555.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 18348 18348 100% 0.0 99% KX185891.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 18348 18348 100% 0.0 99% KX156774.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 18348 18348 100% 0.0 99% KU963796.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 18348 18348 100% 0.0 99% KU940228.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 18348 18348 100% 0.0 99% KU647676.1 Select seq gb|KU820897.3| Zika virus isolate FLR polyprotein gene, complete cds 18345 18345 100% 0.0 99% KU820897.3 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 18345 18345 100% 0.0 99% KX253996.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 18345 18345 100% 0.0 99% KX156775.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 18345 18345 100% 0.0 99% KX087102.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 18345 18345 100% 0.0 99% KU955589.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 18345 18345 100% 0.0 99% KU820899.2 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 18345 18345 100% 0.0 99% KU501217.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 18345 18345 100% 0.0 99% KU365778.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 18345 18345 100% 0.0 99% KU312312.1 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 18341 18341 100% 0.0 99% KX266255.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 18339 18339 100% 0.0 99% KU866423.2 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 18339 18339 100% 0.0 99% KU729217.2 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 18339 18339 100% 0.0 99% KU527068.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 18339 18339 100% 0.0 99% KU501216.1 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 18336 18336 100% 0.0 99% KX247632.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 18336 18336 100% 0.0 99% KU937936.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 18336 18336 100% 0.0 99% KU501215.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 18330 18330 100% 0.0 99% KX601168.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 18330 18330 100% 0.0 99% KX520666.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 18330 18330 100% 0.0 99% KX087101.2 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 18330 18330 100% 0.0 99% KU922960.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 18327 18327 100% 0.0 99% KX548902.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 18327 18327 100% 0.0 99% KX446951.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 18327 18327 100% 0.0 99% KX377337.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 18327 18327 100% 0.0 99% KU926310.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 18327 18327 100% 0.0 99% KU922923.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 18327 18327 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 18325 18325 100% 0.0 99% KU853012.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 18321 18321 100% 0.0 99% KX446950.1 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 18321 18321 100% 0.0 99% KU870645.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 18318 18318 100% 0.0 99% KU820898.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 18312 18312 100% 0.0 99% KX056898.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 18312 18312 100% 0.0 99% KU955590.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 18309 18309 100% 0.0 99% KU740184.2 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 18309 18309 100% 0.0 99% KU761564.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 18303 18303 100% 0.0 99% KX673530.1 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 18254 18254 99% 0.0 99% KU940224.1 Select seq gb|KU744693.1| Zika virus isolate VE_Ganxian, complete genome 18150 18150 100% 0.0 99% KU744693.1 Select seq gb|KU681081.3| Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome 18123 18123 100% 0.0 99% KU681081.3 Select seq gb|KU955593.1| Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome 17825 17825 100% 0.0 98% KU955593.1 Select seq gb|JN860885.1| Zika virus isolate FSS13025 polyprotein gene, partial cds 17825 17825 99% 0.0 99% JN860885.1 Select seq gb|KF993678.1| Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds 17769 17769 98% 0.0 99% KF993678.1 Select seq gb|EU545988.1| Zika virus polyprotein gene, complete cds 17670 17670 100% 0.0 98% EU545988.1 Select seq gb|KU681082.3| Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome 17524 17524 100% 0.0 98% KU681082.3 Select seq gb|KX601167.1| Zika virus strain ZIKV/Aedes sp./MYS/P6-740/1966, complete genome 16482 16482 100% 0.0 96% KX601167.1 Select seq gb|HQ234499.1| Zika virus isolate P6-740 polyprotein gene, partial cds 16475 16475 99% 0.0 96% HQ234499.1 Select seq gb|KX377336.1| Zika virus strain P6-740, complete genome 16469 16469 100% 0.0 96% KX377336.1 Select seq gb|KX447518.1| Zika virus isolate 1_0117_PF polyprotein gene, partial cds 16253 16253 88% 0.0 99% KX447518.1 Link to comment Share on other sites More sharing options...
niman Posted August 16, 2016 Author Report Share Posted August 16, 2016 LOCUS KX447516 10654 bp RNA linear VRL 14-AUG-2016 DEFINITION Zika virus isolate 1_0111_PF polyprotein gene, complete cds. ACCESSION KX447516 VERSION KX447516.1 GI:1041521224 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10654) AUTHORS Nougairede,A., Bouazza,N., Piorkowski,G., Baronti,C., Musso,D. and De Lamballerie,X. TITLE Zika virus outbreak in French Polynesia, 2013-2014 JOURNAL Unpublished REFERENCE 2 (bases 1 to 10654) AUTHORS Nougairede,A., Bouazza,N., Piorkowski,G., Baronti,C., Musso,D. and De Lamballerie,X. TITLE Direct Submission JOURNAL Submitted (28-JUN-2016) Umr190, Aix Marseille Universite, 27 Bd Jean Moulin, Marseille 13005, France COMMENT ##Assembly-Data-START## Assembly Method :: CLC Genomics Workbench v. 8.5.1 Sequencing Technology :: IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10654 /organism="Zika virus" /mol_type="genomic RNA" /isolate="1_0111_PF" /isolation_source="serum" /host="Homo sapiens" /db_xref="taxon:64320" /country="French Polynesia" /collection_date="Jan-2014" /note="Vero cells; one passage; genotype: Asian" CDS 85..10356 /codon_start=1 /product="polyprotein" /protein_id="ANO46308.1" /db_xref="GI:1041521225" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSKKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSMVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPMLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST QVRYLGEEGSTPGVL" ORIGIN 1 actgcgacag ttcgagtttg aagcgaaagc tagcaacagt atcaacaggt tttattttgg 61 atttggaaac gagagtttct ggtcatgaaa aacccaaaaa agaaatccgg aggattccgg 121 attgtcaata tgctaaaacg cggagtagcc cgtgtgagcc cctttggggg cttgaagagg 181 ctgccagccg gacttctgct gggtcatggg cccatcagga tggtcttggc gattctagcc 241 tttttgagat tcacggcaat caagccatca ctgggtctca tcaatagatg gggttcagtg 301 gggaaaaaag aggctatgga aataataaag aagttcaaga aagatctggc tgccatgctg 361 agaataatca atgctaggaa ggagaagaag agacgaggcg cagatactag tgtcggaatt 421 gttggcctcc tgctgaccac agctatggca gcggaggtca ctagacgtgg gagtgcatac 481 tatatgtact tggacagaaa cgatgctggg gaggccatat cttttccaac cacattgggg 541 atgaataagt gttatataca gatcatggat cttggacaca tgtgtgatgc caccatgagc 601 tatgaatgcc ctatgctgga tgagggggtg gaaccagatg acgtcgattg ttggtgcaac 661 acgacgtcaa cttgggttgt gtacggaacc tgccatcaca aaaaaggtga agcacggaga 721 tctagaagag ctgtgacgct cccctcccat tccactagga agctgcaaac gcggtcgcaa 781 acctggttgg aatcaagaga atacacaaag cacttgatta gagtcgaaaa ttggatattc 841 aggaaccctg gcttcgcgtt agcagcagct gccatcgctt ggcttttggg aagttcaacg 901 agcaaaaaag tcatatactt ggtcatgata ctgctgattg ccccggcata cagcatcagg 961 tgcataggag tcagcaatag ggactttgtg gaaggtatgt caggtgggac ttgggttgat 1021 gttgtcttgg aacatggagg ttgtgtcacc gtaatggcac aggacaaacc gactgtcgac 1081 atagagctgg ttacaacaac agtcagcaac atggcggagg taagatccta ctgctatgag 1141 gcatcaatat cggacatggc ttcggacagc cgctgcccaa cacaaggtga agcctacctt 1201 gacaagcaat cagacactca atatgtctgc aaaagaacgt tagtggacag aggctgggga 1261 aatggatgtg gactttttgg caaagggagc ctggtgacat gcgctaagtt tgcatgctcc 1321 aagaaaatga ccgggaagag catccagcca gagaatctgg agtaccggat aatgctgtca 1381 gttcatggct cccagcacag tgggatgatc gttaatgaca caggacatga aactgatgag 1441 aatagagcga aggttgagat aacgcccaat tcaccaagag ccgaagccac cctggggggt 1501 tttggaagcc taggacttga ttgtgaaccg aggacaggcc ttgacttttc agatttgtat 1561 tacttgacta tgaataacaa gcactggttg gttcacaagg agtggttcca cgacattcca 1621 ttaccttggc acgctggggc agacaccgga actccacact ggaacaacaa agaagcactg 1681 gtagagttca aggacgcaca tgccaaaagg caaactgtcg tggttctagg gagtcaagaa 1741 ggagcagttc acacggccct tgctggagct ctggaggctg agatggatgg tgcaaaggga 1801 aggctgtcct ctggccactt gaaatgtcgc ctgaaaatgg ataaacttag attgaagggc 1861 gtgtcatact ccttgtgtac cgcagcgttc acattcacca agatcccggc tgaaacactg 1921 cacgggacag tcacagtgga ggtacagtac gcagggacag atggaccttg caaggttcca 1981 gctcagatgg cggtggacat gcaaactctg accccagttg ggaggttgat aaccgctaac 2041 cccgtaatca ctgaaagcac tgagaactct aagatgatgc tggaacttga tccaccattt 2101 ggggactctt acattgtcat aggagtcggg gagaagaaga tcacccacca ctggcacagg 2161 agtggcagca ccattggaaa agcatttgaa gccactgtga gaggtgccaa gagaatggca 2221 gtcttgggag acacagcctg ggactttgga tcagttggag gcgctctcaa ctcattgggc 2281 aagggcatcc atcaaatttt tggagcagct ttcaaatcat tgtttggagg aatgtcctgg 2341 ttctcacaaa ttctcattgg gacgttgctg atgtggttgg gtctgaacac aaagaatgga 2401 tctatttccc ttatgtgctt ggccttaggg ggagtgttga tcttcttatc cacagccgtc 2461 tctgctgatg tggggtgctc ggtggacttc tcaaagaagg agacgagatg cggtacaggg 2521 gtgttcgtct ataacgacgt tgaagcctgg agggacaggt acaagtacca tcctgactcc 2581 ccccgtagat tggcagcagc agtcaagcaa gcctgggaag atggtatctg tgggatctcc 2641 tctgtttcaa gaatggaaaa catcatgtgg agatcagtag aaggggagct caacgcaatc 2701 ctggaagaga atggagttca actgacggtc gttgtgggat ctgtaaaaaa ccccatgtgg 2761 agaggtccac agagattgcc cgtgcctgtg aacgagttgc cccacggctg gaaggcttgg 2821 gggaaatcgt acttcgtcag agcagcaaag acaaataaca gctttgtcgt ggatggtgac 2881 acactgaagg aatgcccact caaacataga gcatggaaca gctttcttgt ggaggatcat 2941 gggttcgggg tatttcacac tagtgtctgg ctcaaggtta gagaagatta ttcattagag 3001 tgtgatccag ccgttattgg aacagctgtt aagggaaagg aggctgtaca cagtgatcta 3061 ggctactgga ttgagagtga gaagaatgac acatggaggc tgaagagggc ccatctgatc 3121 gagatgaaaa catgtgaatg gccaaagtcc cacacattgt ggacagatgg aatagaagag 3181 agtgatctga tcatacccaa gtctttagct gggccactca gccatcacaa taccagagag 3241 ggctacagga cccaaatgaa agggccatgg cacagtgaag agcttgaaat tcggtttgag 3301 gaatgcccag gcactaaggt ccacgtggag gaaacatgtg gaacaagagg accatctctg 3361 agatcaacca ctgcaagcgg aagggtgatc gaggaatggt gctgcaggga gtgcacaatg 3421 cccccactgt cgttccgggc taaagatggc tgttggtatg gaatggagat aaggcccagg 3481 aaagaaccag aaagtaactt agtaaggtca atggtgactg caggatcaac tgatcacatg 3541 gatcacttct cccttggagt gcttgtgatt ctgctcatgg tgcaggaagg gctgaagaag 3601 agaatgacca caaagatcat cataagcaca tcaatggcag tgctggtagc tatgatcctg 3661 ggaggatttt caatgagtga cctggctaag cttgcaattt tgatgggtgc caccttcgcg 3721 gaaatgaaca ctggaggaga tgtagctcat ctggcgctga tagcggcatt caaagtcaga 3781 ccagcgttgc tggtatcttt catcttcaga gctaattgga caccccgtga aagcatgctg 3841 ctggccttgg cctcgtgtct tttgcaaact gcgatctccg ccttggaagg cgacctgatg 3901 gttctcatca atggttttgc tttggcctgg ttggcaatac gagcgatggt tgttccacgc 3961 actgataaca tcaccttggc aatcctggct gctctgacac cactggcccg gggcacactg 4021 cttgtggcgt ggagagcagg ccttgctact tgcggggggt ttatgctcct ctctctgaag 4081 ggaaaaggca gtgtgaagaa gaacttacca tttgtcatgg ccctgggact aaccgctgtg 4141 aggctggtcg accccatcaa cgtggtggga ctgctgttgc tcacaaggag tgggaagcgg 4201 agctggcccc ctagcgaagt actcacagct gttggcttga tatgcgcatt ggctggaggg 4261 ttcgccaagg cagatataga gatggctggg cccatggccg cggtcggtct gctaattgtc 4321 agttacgtgg tctcaggaaa gagtgtggac atgtacattg aaagagcagg tgacatcaca 4381 tgggaaaaag atgcggaagt cactggaaac agtccccggc tcgatgtggc gctagatgag 4441 agtggtgatt tctccctggt ggaggatgac ggtcccccca tgagagagat catactcaag 4501 gtggtcctga tgaccatctg tggcatgaac ccaatagcca taccctttgc agctggagcg 4561 tggtacgtat acgtgaagac tggaaaaagg agtggtgctc tatgggatgt gcctgctccc 4621 aaggaagtaa aaaaggggga gaccacagat ggagtgtaca gagtaatgac tcgtagactg 4681 ctaggttcaa cacaagttgg agtgggagtt atgcaagagg gggtctttca cactatgtgg 4741 cacgtcacaa aaggatccgc gctgagaagc ggtgaaggga gacttgatcc atactgggga 4801 gatgtcaagc aggatctggt gtcatactgt ggtccatgga agctagatgc cgcctgggac 4861 gggcacagcg aggtgcagct cttggccgtg ccccccggag agagagcgag gaacatccag 4921 actctgcccg gaatatttaa gacaaaggat ggggacattg gagcggttgc gctggattac 4981 ccagcaggaa cttcaggatc tccaatccta gacaagtgtg ggagagtgat aggactttat 5041 ggcaatgggg tcgtgatcaa aaatgggagt tatgttagtg ccatcaccca agggaggagg 5101 gaggaagaga ctcctgttga gtgcttcgag ccttcgatgc tgaagaagaa gcagctaact 5161 gtcttagact tgcatcctgg agctgggaaa accaggagag ttcttcctga aatagtccgt 5221 gaagccataa aaacaagact ccgtactgtg atcttagctc caaccagggt tgtcgctgct 5281 gaaatggagg aagcccttag agggcttcca gtgcgttata tgacaacagc agtcaatgtc 5341 acccactctg gaacagaaat cgtcgactta atgtgccatg ccaccttcac ttcacgtcta 5401 ctacagccaa tcagagtccc caactataat ctgtatatta tggatgaggc ccacttcaca 5461 gatccctcaa gtatagcagc aagaggatac atttcaacaa gggttgagat gggcgaggcg 5521 gctgccatct tcatgaccgc cacgccacca ggaacccgtg acgcatttcc ggactccaac 5581 tcaccaatta tggacaccga agtggaagtc ccagagagag cctggagctc aggctttgat 5641 tgggtgacgg atcattctgg aaaaacagtt tggtttgttc caagcgtgag gaacggcaat 5701 gagatcgcag cttgtctgac aaaggctgga aaacgggtca tacagctcag cagaaagact 5761 tttgagacag agttccagaa aacaaaacat caagagtggg actttgtcgt gacaactgac 5821 atttcagaga tgggcgccaa ctttaaagct gaccgtgtca tagattccag gagatgccta 5881 aagccggtca tacttgatgg cgagagagtc attctggctg gacccatgcc tgtcacacat 5941 gccagcgctg cccagaggag ggggcgcata ggcaggaatc ccaacaaacc tggagatgag 6001 tatctgtatg gaggtgggtg cgcagagact gacgaagacc atgcacactg gcttgaagca 6061 agaatgctcc ttgacaatat ttacctccaa gatggcctca tagcctcgct ctatcgacct 6121 gaggccgaca aagtagcagc cattgaggga gagttcaagc ttaggacgga gcaaaggaag 6181 acctttgtgg aactcatgaa aagaggagat cttcctgttt ggctggccta tcaggttgca 6241 tctgccggaa taacctacac agatagaaga tggtgctttg atggcacgac caacaacacc 6301 ataatggaag acagtgtgcc ggcagaggtg tggaccagac acggagagaa aagagtgctc 6361 aaaccgaggt ggatggacgc cagagtttgt tcagatcatg cggccctgaa gtcattcaag 6421 gagtttgccg ctgggaaaag aggagcggct tttggagtga tggaagccct gggaacactg 6481 ccaggacaca tgacagagag attccaggaa gccattgaca acctcgctgt gctcatgcgg 6541 gcagagactg gaagcaggcc ttacaaagcc gcggcggccc aattgccgga gaccctagag 6601 accattatgc ttttggggtt gctgggaaca gtctcgctgg gaatcttttt cgtcttgatg 6661 aggaacaagg gcatagggaa gatgggcttt ggaatggtga ctcttggggc cagcgcatgg 6721 ctcatgtggc tctcggaaat tgagccagcc agaattgcat gtgtcctcat tgttgtgttc 6781 ctattgctgg tggtgctcat acctgagcca gaaaagcaaa gatctcccca ggacaaccaa 6841 atggcaatca tcatcatggt agcagtaggt cttctgggct tgattaccgc caatgaactc 6901 ggatggttgg agagaacaaa gagtgaccta agccatctaa tgggaaggag agaggagggg 6961 gcaaccatag gattctcaat ggacattgac ctgcggccag cctcagcttg ggccatctat 7021 gctgccttga caactttcat taccccagcc gtccaacatg cagtgaccac ttcatacaac 7081 aactactcct taatggcgat ggccacgcaa gctggagtgt tgtttggtat gggcaaaggg 7141 atgccattct acgcatggga ctttggagtc ccgctgctaa tgataggttg ctactcacaa 7201 ttaacacccc tgaccctaat agtggccatc attttgctcg tggcgcacta catgtacttg 7261 atcccagggc tgcaggcagc agctgcgcgt gctgcccaga agagaacggc agctggcatc 7321 atgaagaacc ctgttgtgga tggaatagtg gtgactgaca ttgacacaat gacaattgac 7381 ccccaagtgg agaaaaagat gggacaggtg ctactcatag cagtagccgt ctccagcgcc 7441 atactgtcgc ggaccgcctg ggggtggggg gaggctgggg ccctgatcac agctgcaact 7501 tccactttgt gggaaggctc tccgaacaag tactggaact cctctacagc cacttcactg 7561 tgtaacattt ttaggggaag ttacttggct ggagcttctc taatctacac agtaacaaga 7621 aacgctggct tggtcaagag acgtgggggt ggaacaggag agaccctggg agagaaatgg 7681 aaggcccgct tgaaccagat gtcggccctg gagttctact cctacaaaaa gtcaggcatc 7741 accgaggtgt gcagagaaga ggcccgccgc gccctcaagg acggtgtggc aacgggaggc 7801 catgctgtgt cccgaggaag tgcaaagctg agatggttgg tggagcgggg atacctgcag 7861 ccctatggaa aggtcattga tcttggatgt ggcagagggg gctggagtta ctacgccgcc 7921 accatccgca aagttcaaga agtgaaagga tacacaaaag gaggccctgg tcatgaagaa 7981 cccatgttgg tgcaaagcta tgggtggaac atagtccgtc ttaagagtgg ggtggacgtc 8041 tttcatatgg cggctgagcc gtgtgacacg ttgctgtgtg acataggtga gtcatcatcc 8101 agtcctgaag tggaagaagc acggacgctc agagtcctct ccatggtggg ggattggctt 8161 gaaaaaagac caggagcctt ttgtataaaa gtgttgtgcc catacaccag cactatgatg 8221 gaaaccctgg agcgactgca gcgtaggtat gggggaggac tggtcagagt gccactctcc 8281 cgcaactcta cacatgagat gtactgggtc tctggagcga aaagcaacac cataaaaagt 8341 gtgtccacca cgagccagct cctcttgggg cgcatggacg ggcccaggag gccagtgaaa 8401 tatgaggagg atgtgaatct cggctctggc acgcgggctg tggtaagctg cgctgaagct 8461 cccaacatga agatcattgg taaccgcatt gaaaggatcc gcagtgagca cgcggaaacg 8521 tggttctttg acgagaacca cccatatagg acatgggctt accatggaag ctatgaggcc 8581 cccacacaag ggtcagcgtc ctctctaata aacggggttg tcaggctcct gtcaaaaccc 8641 tgggatgtgg tgactggagt cacaggaata gccatgaccg acaccacacc gtatggtcag 8701 caaagagttt tcaaggaaaa agtggacact agggtgccag acccccaaga aggcactcgt 8761 caggttatga gcatggtctc ttcctggttg tggaaagagc taggcaaaca caaacggcca 8821 cgagtctgta ccaaagaaga gttcatcaac aaggttcgta gcaatgcagc actaggggca 8881 atatttgaag aggaaaaaga gtggaagact gcagtggaag ctgtgaacga tccaaggttc 8941 tgggctctag tggacaagga aagagagcac cacctgagag gagagtgcca gagttgtgtg 9001 tacaacatga tgggaaaaag agaaaagaaa caaggggaat ttggaaaggc caagggcagc 9061 cgcgccatct ggtatatgtg gctaggggct agatttctag agttcgaagc ccttggattc 9121 ttgaacgagg atcactggat ggggagagag aactcaggag gtggtgttga agggctggga 9181 ttacaaagac tcggatatgt cctagaagag atgagtcgca taccaggagg aaggatgtat 9241 gcagatgaca ctgctggctg ggacacccgc atcagcaggt ttgatctgga gaatgaagct 9301 ctaatcacca accaaatgga gaaagggcac agggccttgg cattggccat aatcaagtac 9361 acataccaaa acaaagtggt aaaggtcctt agaccagctg aaaaagggaa gacagttatg 9421 gacattattt cgagacaaga ccaaaggggg agcggacaag ttgtcactta cgctcttaac 9481 acatttacca acctagtggt gcaactcatt cggaatatgg aggctgagga agttctagag 9541 atgcaagact tgtggctgct gcggaggtca gagaaagtga ccaactggtt gcagagcaac 9601 ggatgggata ggctcaaacg aatggcagtc agtggagatg attgcgttgt gaagccaatt 9661 gatgataggt ttgcacatgc cctcaggttc ttgaatgata tgggaaaagt taggaaggac 9721 acacaagagt ggaaaccctc aactggatgg gacaactggg aagaagttcc gttttgctcc 9781 caccacttca acaagctcca tctcaaggac gggaggtcca ttgtggttcc ctgccgccac 9841 caagatgaac tgattggccg ggcccgcgtc tctccagggg cgggatggag catccgggag 9901 actgcttgcc tagcaaaatc atatgcgcaa atgtggcagc tcctttattt ccacagaagg 9961 gacctccgac tgatggccaa tgccatttgt tcatctgtgc cagttgactg ggttccaact 10021 gggagaacta cctggtcaat ccatggaaag ggagaatgga tgaccactga agacatgctt 10081 gtggtgtgga acagagtgtg gattgaggag aacgaccaca tggaagacaa gaccccagtt 10141 acgaaatgga cagacattcc ctatttggga aaaagggaag acttgtggtg tggatctctc 10201 atagggcaca gaccgcgcac cacctgggct gagaacatta aaaacacagt caacatggtg 10261 cgcaggatca taggtgatga agaaaagtac atggactacc tatccaccca agttcgctac 10321 ttgggtgaag aagggtctac acctggagtg ctgtaagcac caatcttagt gttgtcaggc 10381 ctgctagtca gccacagctt ggggaaagct gtgcagcctg tgaccccccc aggagaagct 10441 gggaaaccaa gcctatagtc aggccgagaa cgccatggca cggaagaagc catgctgcct 10501 gtgagcccct cagaggacac tgagtcaaaa aaccccacgc gcttggaggc gcaggatggg 10561 aaaagaaggt ggcgaccttc cccacccttc aatctggggc ctgaactgga gatcagctgt 10621 ggatctccag aagagggact agtggttaga ggag Link to comment Share on other sites More sharing options...
niman Posted August 16, 2016 Author Report Share Posted August 16, 2016 Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 18525 18525 100% 0.0 100% KX447516.1 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 18480 18480 100% 0.0 99% KX447509.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 18474 18474 100% 0.0 99% KX447512.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 18474 18474 100% 0.0 99% KX369547.1 Select seq gb|KJ776791.1| Zika virus strain H/PF/2013 polyprotein gene, complete cds 18474 18474 100% 0.0 99% KJ776791.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 18471 18471 100% 0.0 99% KX447515.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 18465 18465 100% 0.0 99% KX447514.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 18465 18465 100% 0.0 99% KX447513.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 18462 18462 100% 0.0 99% KX447511.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 18456 18456 100% 0.0 99% KX447510.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 18429 18429 100% 0.0 99% KX447517.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 18429 18429 100% 0.0 99% KU509998.3 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 18411 18411 100% 0.0 99% KX280026.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 18411 18411 100% 0.0 99% KX051563.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 18408 18408 100% 0.0 99% KU991811.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 18408 18408 100% 0.0 99% KU321639.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 18399 18399 100% 0.0 99% KU729218.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 18399 18399 100% 0.0 99% KU707826.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 18399 18399 100% 0.0 99% KU365779.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 18393 18393 100% 0.0 99% KX262887.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 18393 18393 100% 0.0 99% KX197192.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 18390 18390 100% 0.0 99% KX117076.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 18390 18390 100% 0.0 99% KU940228.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 18384 18384 100% 0.0 99% KX198135.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 18384 18384 100% 0.0 99% KU926309.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 18384 18384 100% 0.0 99% KU365780.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 18381 18381 100% 0.0 99% KX185891.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 18381 18381 100% 0.0 99% KU963796.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 18381 18381 100% 0.0 99% KU647676.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 18381 18381 100% 0.0 99% KU365777.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 18375 18375 100% 0.0 99% KU758877.1 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 18375 18375 100% 0.0 99% KX253996.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 18375 18375 100% 0.0 99% KX247646.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 18375 18375 100% 0.0 99% KX156776.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 18375 18375 100% 0.0 99% KU955589.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 18375 18375 100% 0.0 99% KU820899.2 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 18375 18375 100% 0.0 99% KU501217.1 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 18372 18372 100% 0.0 99% KX266255.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 18372 18372 100% 0.0 99% KX520666.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 18372 18372 100% 0.0 99% KU866423.2 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 18372 18372 100% 0.0 99% KX156774.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 18372 18372 100% 0.0 99% KU729217.2 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 18372 18372 99% 0.0 99% KU497555.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 18372 18372 100% 0.0 99% KU527068.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 18372 18372 100% 0.0 99% KU501216.1 Select seq gb|KU820897.3| Zika virus isolate FLR polyprotein gene, complete cds 18366 18366 100% 0.0 99% KU820897.3 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 18366 18366 100% 0.0 99% KX247632.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 18366 18366 100% 0.0 99% KX156775.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 18366 18366 100% 0.0 99% KX087102.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 18366 18366 100% 0.0 99% KU365778.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 18366 18366 100% 0.0 99% KU312312.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 18363 18363 100% 0.0 99% KU922960.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 18357 18357 100% 0.0 99% KX548902.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 18357 18357 100% 0.0 99% KX446951.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 18357 18357 100% 0.0 99% KU937936.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 18357 18357 100% 0.0 99% KU926310.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 18357 18357 100% 0.0 99% KU922923.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 18357 18357 100% 0.0 99% KU501215.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 18354 18354 100% 0.0 99% KX601168.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 18354 18354 100% 0.0 99% KX446950.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 18354 18354 100% 0.0 99% KX087101.2 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 18354 18354 100% 0.0 99% KU870645.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 18348 18348 100% 0.0 99% KX377337.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 18348 18348 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 18348 18348 100% 0.0 99% KU853012.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 18339 18339 100% 0.0 99% KU820898.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 18336 18336 100% 0.0 99% KX056898.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 18336 18336 100% 0.0 99% KU955590.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 18330 18330 100% 0.0 99% KU740184.2 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 18330 18330 100% 0.0 99% KU761564.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 18327 18327 100% 0.0 99% KX673530.1 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 18294 18294 99% 0.0 99% KU940224.1 Select seq gb|KU744693.1| Zika virus isolate VE_Ganxian, complete genome 18191 18191 100% 0.0 99% KU744693.1 Select seq gb|KU681081.3| Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome 18137 18137 100% 0.0 99% KU681081.3 Select seq gb|KU955593.1| Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome 17831 17831 100% 0.0 99% KU955593.1 Select seq gb|JN860885.1| Zika virus isolate FSS13025 polyprotein gene, partial cds 17829 17829 99% 0.0 99% JN860885.1 Select seq gb|KF993678.1| Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds 17766 17766 98% 0.0 99% KF993678.1 Select seq gb|EU545988.1| Zika virus polyprotein gene, complete cds 17685 17685 100% 0.0 98% EU545988.1 Select seq gb|KU681082.3| Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome 17528 17528 100% 0.0 98% KU681082.3 Select seq gb|KX601167.1| Zika virus strain ZIKV/Aedes sp./MYS/P6-740/1966, complete genome 16496 16496 100% 0.0 96% KX601167.1 Select seq gb|HQ234499.1| Zika virus isolate P6-740 polyprotein gene, partial cds 16487 16487 99% 0.0 96% HQ234499.1 Select seq gb|KX377336.1| Zika virus strain P6-740, complete genome 16482 16482 100% 0.0 96% KX377336.1 Select seq gb|KX447518.1| Zika virus isolate 1_0117_PF polyprotein gene, partial cds 16280 16280 88% 0.0 99% KX447518.1 Link to comment Share on other sites More sharing options...
niman Posted August 16, 2016 Author Report Share Posted August 16, 2016 LOCUS KX447510 10588 bp RNA linear VRL 14-AUG-2016 DEFINITION Zika virus isolate 1_0049_PF polyprotein gene, complete cds. ACCESSION KX447510 VERSION KX447510.1 GI:1041521212 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10588) AUTHORS Nougairede,A., Bouazza,N., Piorkowski,G., Baronti,C., Musso,D. and De Lamballerie,X. TITLE Zika virus outbreak in French Polynesia, 2013-2014 JOURNAL Unpublished REFERENCE 2 (bases 1 to 10588) AUTHORS Nougairede,A., Bouazza,N., Piorkowski,G., Baronti,C., Musso,D. and De Lamballerie,X. TITLE Direct Submission JOURNAL Submitted (28-JUN-2016) Umr190, Aix Marseille Universite, 27 Bd Jean Moulin, Marseille 13005, France COMMENT ##Assembly-Data-START## Assembly Method :: CLC Genomics Workbench v. 8.5.1 Sequencing Technology :: IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10588 /organism="Zika virus" /mol_type="genomic RNA" /isolate="1_0049_PF" /isolation_source="serum" /host="Homo sapiens" /db_xref="taxon:64320" /country="French Polynesia" /collection_date="Dec-2013" /note="Vero cells; one passage; genotype: Asian" CDS 48..10319 /codon_start=1 /product="polyprotein" /protein_id="ANO46302.1" /db_xref="GI:1041521213" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSMVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPMLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST QVRYLGEEGSTPGVL" ORIGIN 1 agtatcaaca ggttttattt tggatttgga aacgagagtt tctggtcatg aaaaacccta 61 aaaagaaatc cggaggattc cggattgtca atatgctaaa acgcggagta gcccgtgtga 121 gcccctttgg gggcttgaag aggctgccag ccggacttct gctgggtcat gggcccatca 181 ggatggtctt ggcgattcta gcctttttga gattcacggc tatcaagcca tcactgggtc 241 tcatcaatag atggggttca gtggggaaaa aagaggctat ggaaataata aagaagttca 301 agaaagatct ggctgccatg ctgagaataa tcaatgctag gaaggagaag aagagacgag 361 gcgcagatac tagtgtcgga attgttggcc tcctgctgac cacagctatg gcagcggagg 421 tcactagacg tgggagtgca tactatatgt acttggacag aaacgatgct ggggaggcca 481 tatcttttcc aaccacattg gggatgaata agtgttatat acagatcatg gatcttggac 541 acatgtgtga tgccaccatg agctatgaat gccctatgct ggatgagggg gtggaaccag 601 atgacgtcga ttgttggtgc aacacgacgt caacttgggt tgtgtacgga acctgccatc 661 acaaaaaagg tgaagcacgg agatctagaa gagctgtgac gctcccctcc cattccacta 721 ggaagctgca aacgcggtcg caaacctggt tggaatcaag agaatacaca aagcacttga 781 ttagagtcga aaattggata ttcaggaacc ctggcttcgc gttagcagca gctgccatcg 841 cttggctttt gggaagctca acgagccaaa aagtcatata cttggtcatg atactgctga 901 ttgccccggc atacagcatc aggtgcatag gagtcagcaa tagggacttt gtggaaggta 961 tgtcaggtgg gacttgggtt gatgttgtct tggaacatgg aggttgtgtc accgtaatgg 1021 cacaggacaa accgactgtc gacatagagc tggttacaac aacagtcagc aacatggcgg 1081 aggtaagatc ctactgctat gaggcatcaa tatcagacat ggcttcggac agccgctgcc 1141 caacacaagg tgaagcctac cttgacaagc aatcagacac tcaatatgtc tgcaaaagaa 1201 cgttagtgga cagaggctgg ggaaatggat gtggactttt tggcaaaggg agcctggtga 1261 catgcgctaa gtttgcatgc tccaagaaaa tgaccgggaa gagcatccag ccagagaatc 1321 tggagtaccg gataatgctg tcagttcatg gctcccagca cagtgggatg atcgttaatg 1381 acacaggaca tgaaactgat gagaatagag cgaaggttga gataacgccc aattcaccaa 1441 gagccgaagc caccctgggg ggttttggaa gcctaggact tgattgtgaa ccgaggacag 1501 gccttgactt ttcagatttg tattacttga ctatgaataa caagcactgg ttggttcaca 1561 aggagtggtt ccacgacatt ccattacctt ggcacgctgg ggcagacacc ggaactccac 1621 actggaacaa caaagaagca ctggtagagt tcaaggacgc acatgccaaa aggcaaactg 1681 tcgtggttct agggagtcaa gaaggagcag ttcacacggc ccttgctgga gctctggagg 1741 ctgagatgga tggtgcaaag ggaaggctgt cctctggcca cttgaaatgt cgcctgaaaa 1801 tggataaact tagattgaag ggcgtgtcat actccttgtg taccgcagcg ttcacattca 1861 ccaagatccc ggctgaaaca ctgcacggga cagtcacagt ggaggtacag tacgcaggga 1921 cagatggacc ttgcaaggtt ccagctcaga tggcggtgga catgcaaact ctgaccccag 1981 ttgggaggtt gataaccgct aaccccgtaa tcactgaaag cactgagaac tctaagatga 2041 tgctggaact tgatccacca tttggggact cttacattgt cataggagtc ggggagaaga 2101 agatcaccca ccactggcac aggagtggca gcaccattgg aaaagcattt gaagccactg 2161 tgagaggtgc caagagaatg gcagtcttgg gagacacagc ctgggacttt ggatcagttg 2221 gaggcgctct caactcattg ggcaagggca tccatcaaat ttttggagca gctttcaaat 2281 cattgtttgg aggaatgtcc tggttctcac aaattctcat tggaacgttg ctgatgtggt 2341 tgggtctgaa cacaaagaat ggatctattt cccttatgtg cttggcctta gggggagtgt 2401 tgatcttctt atccacagcc gtctctgctg atgtggggtg ctcggtggac ttctcaaaga 2461 aggagacgag atgcggtaca ggggtgttcg tctataacga cgttgaagcc tggagggaca 2521 ggtacaagta ccatcctgac tccccccgta gattggcagc agcagtcaag caagcctggg 2581 aagatggtat ctgcgggatc tcctctgttt caagaatgga aaacatcatg tggagatcag 2641 tagaagggga gctcaacgca atcctggaag agaatggagt tcaactgacg gtcgttgtgg 2701 gatctgtaaa aaaccccatg tggagaggtc cacagagatt gcccgtgcct gtgaacgagc 2761 tgccccacgg ctggaaggct tgggggaaat cgtacttcgt cagagcagca aagacaaata 2821 acagctttgt cgtggatggt gacacactga aggaatgccc actcaaacat agagcatgga 2881 acagctttct tgtggaggat catgggttcg gggtatttca cactagtgtc tggctcaagg 2941 ttagagaaga ttattcatta gagtgtgatc cagccgttat tggaacagct gttaagggaa 3001 aggaggctgt acacagtgat ctaggctact ggattgagag tgagaagaat gacacatgga 3061 ggctgaagag ggcccatctg atcgagatga aaacatgtga atggccaaag tcccacacat 3121 tgtggacaga tggaatagaa gagagtgatc tgatcatacc caagtcttta gctgggccac 3181 tcagccatca caataccaga gagggctaca ggacccaaat gaaagggcca tggcacagtg 3241 aagagcttga aattcggttt gaggaatgcc caggcactaa ggtccacgtg gaggaaacat 3301 gtggaacaag aggaccatct ctgagatcaa ccactgcaag cggaagggtg atcgaggaat 3361 ggtgctgcag ggagtgcaca atgcccccac tgtcgttccg ggctaaagat ggctgttggt 3421 atggaatgga gataaggccc aggaaagaac cagaaagcaa cttagtaagg tcaatggtga 3481 ctgcaggatc aactgatcac atggatcact tctcccttgg agtgcttgtg attctgctca 3541 tggtgcagga agggctgaag aagagaatga ccacaaagat catcataagc acatcaatgg 3601 cagtgctggt agctatgatc ctgggaggat tttcaatgag tgacctggct aagcttgcaa 3661 ttttgatggg tgccaccttc gcggaaatga acactggagg agatgtagct catctggcgc 3721 tgatagcggc attcaaagtc agaccagcgt tgctggtatc tttcatcttc agagctaatt 3781 ggacaccccg tgaaagcatg ctgctggcct tggcctcgtg tcttttgcaa actgcgatct 3841 ccgccttgga aggcgacctg atggttctca tcaatggttt tgctttggcc tggttggcaa 3901 tacgagcgat ggttgttcca cgcactgata acatcacctt ggcaatcctg gctgctctga 3961 caccactggc ccggggcaca ctgcttgtgg cgtggagagc aggccttgct acttgtgggg 4021 ggtttatgct cctctctctg aagggaaaag gcagtgtgaa gaagaactta ccatttgtca 4081 tggccctggg actaaccgct gtgaggctgg tcgaccccat caacgtggtg ggactgctgt 4141 tgctcacaag gagtgggaag cggagctggc cccctagcga agtactcaca gctgttggcc 4201 tgatatgcgc attggctgga gggttcgcca aggcagatat agagatggct gggcccatgg 4261 ccgcggtcgg tctgctaatt gtcagttacg tggtctcagg aaagagtgtg gacatgtaca 4321 ttgaaagagc aggtgacatc acatgggaaa aagatgcgga agtcactgga aacagtcccc 4381 ggctcgatgt ggcgctagat gagagtggtg atttctccct ggtggaggat gacggtcccc 4441 ccatgagaga gatcatactc aaggtggtcc tgatgaccat ctgtggcatg aacccaatag 4501 ccataccctt tgcagctgga gcgtggtacg tatacgtgaa gactggaaaa aggagtggtg 4561 ctctatggga tgtgcctgct cccaaggaag taaaaaaggg ggagaccaca gatggagtgt 4621 acagagtaat gactcgtaga ctgctaggtt caacacaagt tggagtggga gttatgcaag 4681 agggggtctt tcacactatg tggcacgtca caaaaggatc cgcgctgaga agcggtgaag 4741 ggagacttga tccatactgg ggagatgtca agcaggatct ggtgtcatac tgtggtccat 4801 ggaagctaga tgccgcctgg gacgggcaca gcgaggtgca gctcttggcc gtgccccccg 4861 gagagagagc gaggaacatc cagactctgc ccggaatatt taagacaaag gatggggaca 4921 ttggagcggt tgcgctggat tacccagcag gaacttcagg atctccaatc ctagacaagt 4981 gtgggagagt gataggactt tatggcaatg gggtcgtgat caaaaatggg agttatgtta 5041 gtgccatcac ccaagggagg agggaggaag agactcctgt tgagtgcttc gagccttcga 5101 tgctgaagaa gaagcagcta actgtcttag acttgcatcc tggagctggg aaaaccagga 5161 gagttcttcc tgaaatagtc cgtgaagcca taaaaacaag actccgtact gtgatcttag 5221 ctccaaccag ggttgtcgct gctgaaatgg aggaagccct tagagggctt ccagtgcgtt 5281 atatgacaac agcagtcaat gtcacccact ctggaacaga aatcgtcgac ttaatgtgcc 5341 atgccacctt cacttcacgt ctactacagc caatcagagt ccccaactat aatctgtata 5401 ttatggatga ggcccacttc acagatccct caagtatagc agcaagagga tacatttcaa 5461 caagggttga gatgggcgag gcggctgcca tcttcatgac cgccacgcca ccaggaaccc 5521 gtgacgcatt tccggactcc aactcaccaa ttatggacac cgaagtggaa gtcccagaga 5581 gagcctggag ctcaggcttt gattgggtga cggatcattc tggaaaaaca gtttggtttg 5641 ttccaagcgt gaggaacggc aatgagatcg cagcttgtct gacaaaggct ggaaaacggg 5701 tcatacagct cagcagaaag acttttgaga cagagttcca gaaaacaaaa catcaagagt 5761 gggactttgt cgtgacaact gacatttcag agatgggcgc caactttaaa gctgaccgtg 5821 tcatagattc caggagatgc ctaaagccgg tcatacttga tggcgagaga gtcattctgg 5881 ctggacccat gcctgtcaca catgccagcg ctgcccagag gagggggcgc ataggcagga 5941 atcccaacaa acctggagat gagtatctgt atggaggtgg gtgcgcagag actgacgaag 6001 accatgcaca ctggcttgaa gcaagaatgc tccttgacaa tatttacctc caagatggcc 6061 tcatagcttc gctctatcga cctgaggccg acaaagtagc agccattgag ggagagttca 6121 agcttaggac ggagcaaagg aagacctttg tggaactcat gaaaagagga gatcttcctg 6181 tttggctggc ctatcaggtt gcatctgccg gaataaccta cacagataga agatggtgct 6241 ttgatggcac gaccaacaac accataatgg aagacagtgt gccggcagag gtgtggacca 6301 gacacggaga gaaaagagtg ctcaaaccga ggtggatgga cgccagagtt tgttcagatc 6361 atgcggccct gaagtcattc aaggagtttg ccgctgggaa aagaggagcg gcttttggag 6421 tgatggaagc cctgggaaca ctgccaggac acatgacaga gagattccag gaagccattg 6481 acaacctcgc tgtgctcatg cgggcagaga ctggaagcag gccttacaaa gccgcggcgg 6541 cccaattgcc ggagacccta gagaccatta tgcttttggg gttgctggga acagtctcgc 6601 tgggaatctt tttcgtcttg atgaggaaca agggcatagg gaagatgggc tttggaatgg 6661 tgactcttgg ggccagcgca tggctcatgt ggctctcgga aattgagcca gccagaattg 6721 catgtgtcct cattgttgtg ttcctattgc tggtggtgct catacctgag ccagaaaagc 6781 aaagatctcc ccaggacaac caaatggcaa tcatcatcat ggtagcagta ggtcttctgg 6841 gcttgattac cgccaatgaa ctcggatggt tggagagaac aaagagtgac ctaagccatc 6901 taatgggaag gagagaggag ggggcaacca taggattctc aatggacatt gacctgcggc 6961 cagcctcagc ttgggccatc tatgctgcct tgacaacttt cattacccca gccgtccaac 7021 atgcagtgac cacttcatac aacaactact ccttaatggc gatggccacg caagctggag 7081 tgttgtttgg tatgggcaaa gggatgccat tctacgcatg ggactttgga gtcccgctgc 7141 taatgatagg ttgctactca caattaacac ccctgaccct aatagtggcc atcattttgc 7201 tcgtggcgca ctacatgtac ttgatcccag ggctgcaggc agcagctgcg cgtgctgccc 7261 agaagagaac ggcagctggc atcatgaaga accctgttgt ggatggaata gtggtgactg 7321 acattgacac aatgacaatt gacccccaag tggagaaaaa gatgggacag gtgctactca 7381 tagcagtagc cgtctccagc gccatactgt cgcggaccgc ctgggggtgg ggggaggctg 7441 gggccctgat cacagctgca acttccactt tgtgggaagg ctctccgaac aagtactgga 7501 actcctctac agccacttca ctgtgtaaca tttttagggg aagttacttg gctggagctt 7561 ctctaatcta cacagtaaca agaaacgctg gcttggtcaa gagacgtggg ggtggaacag 7621 gagagaccct gggagagaaa tggaaggccc gcttgaacca gatgtcggcc ctggagttct 7681 actcctacaa aaagtcaggc atcaccgagg tgtgcagaga agaggcccgc cgcgccctca 7741 aggacggtgt ggcaacggga ggccatgctg tgtcccgagg aagtgcaaag ctgagatggt 7801 tggtggagcg gggatacctg cagccctatg gaaaggtcat tgatcttgga tgtggcagag 7861 ggggctggag ttactacgcc gccaccatcc gcaaagttca agaagtgaaa ggatacacaa 7921 aaggaggccc tggtcatgaa gaacccatgt tggtgcaaag ctatgggtgg aacatagtcc 7981 gtcttaagag tggggtggac gtctttcata tggcggctga gccgtgtgac acgttgctgt 8041 gtgacatagg tgagtcatca tctagtcctg aagtggaaga agcacggacg ctcagagtcc 8101 tctccatggt gggggattgg cttgaaaaaa gaccaggagc cttttgtata aaagtgttgt 8161 gcccatacac cagcactatg atggaaaccc tggagcgact gcagcgtagg tatgggggag 8221 gactggtcag agtgccactc tcccgcaact ctacacatga gatgtactgg gtctctggag 8281 cgaaaagcaa caccataaaa agtgtgtcca ccacgagcca gctcctcttg gggcgcatgg 8341 acgggcctag gaggccagtg aaatatgagg aggatgtgaa tctcggctct ggcacgcggg 8401 ctgtggtaag ctgcgctgaa gctcccaaca tgaagatcat tggtaaccgc attgaaagga 8461 tccgcagtga gcacgcggaa acgtggttct ttgacgagaa ccacccatat aggacatggg 8521 cttaccatgg aagctatgag gcccccacac aagggtcagc gtcctctcta ataaacgggg 8581 ttgtcaggct cctgtcaaaa ccctgggatg tggtgactgg agtcacagga atagccatga 8641 ccgacaccac accgtatggt cagcaaagag ttttcaagga aaaagtggac actagggtgc 8701 cagaccccca agaaggcact cgtcaggtta tgagcatggt ctcttcctgg ttgtggaaag 8761 agctaggcaa acacaaacgg ccacgagtct gtaccaaaga agagttcatc aacaaggttc 8821 gtagcaatgc agcattaggg gcaatatttg aagaggaaaa agagtggaag actgcagtgg 8881 aagctgtgaa cgatccaagg ttctgggctc tagtggacaa ggaaagagag caccacctga 8941 gaggagagtg ccagagttgt gtgtacaaca tgatgggaaa aagagaaaag aaacaagggg 9001 aatttggaaa ggccaagggc agccgcgcca tctggtatat gtggctaggg gctagatttc 9061 tagagttcga agcccttgga ttcttgaacg aggatcactg gatggggaga gagaactcag 9121 gaggtggtgt tgaagggctg ggattacaaa gactcggata tgtcctagaa gagatgagtc 9181 gcataccagg aggaaggatg tatgcagatg acactgctgg ctgggacacc cgcatcagca 9241 ggtttgatct ggagaatgaa gctctaatca ccaaccaaat ggagaaaggg cacagggcct 9301 tggcattggc cataatcaag tacacatacc aaaacaaagt ggtaaaggtc cttagaccag 9361 ctgaaaaagg gaagacagtt atggacatta tttcgagaca agaccaaagg gggagcggac 9421 aagttgtcac ttacgctctt aacacattta ccaacctagt ggtgcaactc attcggaata 9481 tggaggctga ggaagttcta gagatgcaag acttgtggct gctgcggagg tcagagaaag 9541 tgaccaactg gttgcagagc aacggatggg ataggctcaa acgaatggca gtcagtggag 9601 atgattgcgt tgtgaagcca attgatgata ggtttgcaca tgccctcagg ttcttgaatg 9661 atatgggaaa agttaggaag gacacacaag agtggaaacc ctcaactgga tgggacaact 9721 gggaagaagt tccgttttgc tcccaccact tcaacaagct ccatctcaag gacgggaggt 9781 ccattgtggt tccctgccgc caccaagatg aactgattgg ccgggcccgc gtctctccag 9841 gggcgggatg gagcatccgg gagactgctt gcctagcaaa atcatatgcg caaatgtggc 9901 agctccttta tttccacaga agggacctcc gactgatggc caatgccatt tgttcatctg 9961 tgccagttga ctgggttcca actgggagaa ctacctggtc aatccatgga aagggagaat 10021 ggatgaccac tgaagacatg cttgtggtgt ggaacagagt gtggattgag gagaacgacc 10081 acatggaaga caagacccca gttacgaaat ggacagacat tccctatttg ggaaaaaggg 10141 aagacttgtg gtgtggatct ctcatagggc acagaccgcg caccacctgg gctgagaaca 10201 ttaaaaacac agtcaacatg gtgcgcagga tcataggtga tgaagaaaag tacatggact 10261 acctatccac ccaagttcgc tacttgggtg aagaagggtc tacacctgga gtgctgtaag 10321 caccaatctt agtgttgtca ggcctgctag tcagccacag cttggggaaa gctgtgcagc 10381 ctgtgacccc cccaggagaa gctgggaaac caagcctata gtcaggccga gaacgccatg 10441 gcacggaaga agccatgctg cctgtgagcc cctcagagga cactgagtca aaaaacccca 10501 cgcgcttgga ggcgcaggat gggaaaagaa ggtggcgacc ttccccaccc ttcaatctgg 10561 ggcctgaact ggagatcagc tgtggatc Link to comment Share on other sites 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niman Posted August 16, 2016 Author Report Share Posted August 16, 2016 Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 18525 18525 100% 0.0 100% KX447510.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 18480 18480 100% 0.0 99% KX447512.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 18480 18480 100% 0.0 99% KX369547.1 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 18474 18474 100% 0.0 99% KX447509.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 18471 18471 100% 0.0 99% KX447513.1 Select seq gb|KJ776791.1| Zika virus strain H/PF/2013 polyprotein gene, complete cds 18471 18471 100% 0.0 99% KJ776791.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 18465 18465 100% 0.0 99% KX447515.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 18465 18465 100% 0.0 99% KX447511.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 18462 18462 100% 0.0 99% KX447514.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 18462 18462 100% 0.0 99% KU509998.3 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 18456 18456 100% 0.0 99% KX447516.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 18444 18444 100% 0.0 99% KX051563.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 18438 18438 100% 0.0 99% KX280026.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 18438 18438 100% 0.0 99% KU991811.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 18438 18438 100% 0.0 99% KU321639.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 18429 18429 100% 0.0 99% KU729218.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 18429 18429 100% 0.0 99% KU707826.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 18429 18429 100% 0.0 99% KU365779.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 18426 18426 100% 0.0 99% KX447517.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 18426 18426 100% 0.0 99% KX262887.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 18426 18426 100% 0.0 99% KX197192.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 18417 18417 100% 0.0 99% KX198135.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 18417 18417 100% 0.0 99% KU926309.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 18417 18417 100% 0.0 99% KU365780.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 18411 18411 100% 0.0 99% KU940228.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 18411 18411 100% 0.0 99% KU647676.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 18411 18411 100% 0.0 99% KU365777.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 18408 18408 100% 0.0 99% KU758877.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 18408 18408 100% 0.0 99% KX247646.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 18408 18408 100% 0.0 99% KX156776.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 18408 18408 100% 0.0 99% KU501217.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 18404 18404 99% 0.0 99% KU497555.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 18402 18402 100% 0.0 99% KX156774.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 18402 18402 100% 0.0 99% KU729217.2 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 18402 18402 100% 0.0 99% KU527068.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 18402 18402 100% 0.0 99% KU501216.1 Select seq gb|KU820897.3| Zika virus isolate FLR polyprotein gene, complete cds 18399 18399 100% 0.0 99% KU820897.3 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 18399 18399 100% 0.0 99% KX247632.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 18399 18399 100% 0.0 99% KX156775.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 18399 18399 100% 0.0 99% KX087102.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 18399 18399 100% 0.0 99% KU365778.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 18399 18399 100% 0.0 99% KU312312.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 18393 18393 100% 0.0 99% KX520666.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 18393 18393 100% 0.0 99% KU922960.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 18390 18390 100% 0.0 99% KX548902.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 18390 18390 100% 0.0 99% KX446951.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 18390 18390 100% 0.0 99% KU937936.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 18390 18390 100% 0.0 99% KU926310.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 18390 18390 100% 0.0 99% KU922923.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 18390 18390 100% 0.0 99% KU501215.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 18384 18384 100% 0.0 99% KX601168.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 18384 18384 100% 0.0 99% KX446950.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 18384 18384 100% 0.0 99% KX087101.2 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 18384 18384 100% 0.0 99% KX117076.1 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 18384 18384 100% 0.0 99% KU870645.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 18381 18381 100% 0.0 99% KX377337.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 18381 18381 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 18379 18379 100% 0.0 99% KU853012.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 18375 18375 100% 0.0 99% KX185891.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 18375 18375 100% 0.0 99% KU963796.1 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 18372 18372 100% 0.0 99% KX253996.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 18372 18372 100% 0.0 99% KU955589.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 18372 18372 100% 0.0 99% KU820898.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 18372 18372 100% 0.0 99% KU820899.2 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 18368 18368 100% 0.0 99% KX266255.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 18366 18366 100% 0.0 99% KU866423.2 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 18366 18366 100% 0.0 99% KX056898.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 18366 18366 100% 0.0 99% KU955590.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 18363 18363 100% 0.0 99% KU740184.2 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 18363 18363 100% 0.0 99% KU761564.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 18357 18357 100% 0.0 99% KX673530.1 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 18321 18321 99% 0.0 99% KU940224.1 Select seq gb|KU744693.1| Zika virus isolate VE_Ganxian, complete genome 18213 18213 100% 0.0 99% KU744693.1 Select seq gb|KU681081.3| Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome 18132 18132 100% 0.0 99% KU681081.3 Select seq gb|KU955593.1| Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome 17825 17825 100% 0.0 98% KU955593.1 Select seq gb|JN860885.1| Zika virus isolate FSS13025 polyprotein gene, partial cds 17825 17825 99% 0.0 99% JN860885.1 Select seq gb|KF993678.1| Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds 17793 17793 98% 0.0 99% KF993678.1 Select seq gb|EU545988.1| Zika virus polyprotein gene, complete cds 17676 17676 100% 0.0 98% EU545988.1 Select seq gb|KU681082.3| Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome 17524 17524 100% 0.0 98% KU681082.3 Select seq gb|KX601167.1| Zika virus strain ZIKV/Aedes sp./MYS/P6-740/1966, complete genome 16491 16491 100% 0.0 96% KX601167.1 Select seq gb|HQ234499.1| Zika virus isolate P6-740 polyprotein gene, partial cds 16484 16484 99% 0.0 96% HQ234499.1 Select seq gb|KX377336.1| Zika virus strain P6-740, complete genome 16478 16478 100% 0.0 96% KX377336.1 Select seq gb|KX447518.1| Zika virus isolate 1_0117_PF polyprotein gene, partial cds 16310 16310 88% 0.0 99% KX447518.1 Link to comment Share on other sites More sharing options...
niman Posted August 16, 2016 Author Report Share Posted August 16, 2016 LOCUS KX447510 10588 bp RNA linear VRL 14-AUG-2016 DEFINITION Zika virus isolate 1_0049_PF polyprotein gene, complete cds. ACCESSION KX447510 VERSION KX447510.1 GI:1041521212 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10588) AUTHORS Nougairede,A., Bouazza,N., Piorkowski,G., Baronti,C., Musso,D. and De Lamballerie,X. TITLE Zika virus outbreak in French Polynesia, 2013-2014 JOURNAL Unpublished REFERENCE 2 (bases 1 to 10588) AUTHORS Nougairede,A., Bouazza,N., Piorkowski,G., Baronti,C., Musso,D. and De Lamballerie,X. TITLE Direct Submission JOURNAL Submitted (28-JUN-2016) Umr190, Aix Marseille Universite, 27 Bd Jean Moulin, Marseille 13005, France COMMENT ##Assembly-Data-START## Assembly Method :: CLC Genomics Workbench v. 8.5.1 Sequencing Technology :: IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10588 /organism="Zika virus" /mol_type="genomic RNA" /isolate="1_0049_PF" /isolation_source="serum" /host="Homo sapiens" /db_xref="taxon:64320" /country="French Polynesia" /collection_date="Dec-2013" /note="Vero cells; one passage; genotype: Asian" CDS 48..10319 /codon_start=1 /product="polyprotein" /protein_id="ANO46302.1" /db_xref="GI:1041521213" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSMVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPMLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST QVRYLGEEGSTPGVL" ORIGIN 1 agtatcaaca ggttttattt tggatttgga aacgagagtt tctggtcatg aaaaacccta 61 aaaagaaatc cggaggattc cggattgtca atatgctaaa acgcggagta gcccgtgtga 121 gcccctttgg gggcttgaag aggctgccag ccggacttct gctgggtcat gggcccatca 181 ggatggtctt ggcgattcta gcctttttga gattcacggc tatcaagcca tcactgggtc 241 tcatcaatag atggggttca gtggggaaaa aagaggctat ggaaataata aagaagttca 301 agaaagatct ggctgccatg ctgagaataa tcaatgctag gaaggagaag aagagacgag 361 gcgcagatac tagtgtcgga attgttggcc tcctgctgac cacagctatg gcagcggagg 421 tcactagacg tgggagtgca tactatatgt acttggacag aaacgatgct ggggaggcca 481 tatcttttcc aaccacattg gggatgaata agtgttatat acagatcatg gatcttggac 541 acatgtgtga tgccaccatg agctatgaat gccctatgct ggatgagggg gtggaaccag 601 atgacgtcga ttgttggtgc aacacgacgt caacttgggt tgtgtacgga acctgccatc 661 acaaaaaagg tgaagcacgg agatctagaa gagctgtgac gctcccctcc cattccacta 721 ggaagctgca aacgcggtcg caaacctggt tggaatcaag agaatacaca aagcacttga 781 ttagagtcga aaattggata ttcaggaacc ctggcttcgc gttagcagca gctgccatcg 841 cttggctttt gggaagctca acgagccaaa aagtcatata cttggtcatg atactgctga 901 ttgccccggc atacagcatc aggtgcatag gagtcagcaa tagggacttt gtggaaggta 961 tgtcaggtgg gacttgggtt gatgttgtct tggaacatgg aggttgtgtc accgtaatgg 1021 cacaggacaa accgactgtc gacatagagc tggttacaac aacagtcagc aacatggcgg 1081 aggtaagatc ctactgctat gaggcatcaa tatcagacat ggcttcggac agccgctgcc 1141 caacacaagg tgaagcctac cttgacaagc aatcagacac tcaatatgtc tgcaaaagaa 1201 cgttagtgga cagaggctgg ggaaatggat gtggactttt tggcaaaggg agcctggtga 1261 catgcgctaa gtttgcatgc tccaagaaaa tgaccgggaa gagcatccag ccagagaatc 1321 tggagtaccg gataatgctg tcagttcatg gctcccagca cagtgggatg atcgttaatg 1381 acacaggaca tgaaactgat gagaatagag cgaaggttga gataacgccc aattcaccaa 1441 gagccgaagc caccctgggg ggttttggaa gcctaggact tgattgtgaa ccgaggacag 1501 gccttgactt ttcagatttg tattacttga ctatgaataa caagcactgg ttggttcaca 1561 aggagtggtt ccacgacatt ccattacctt ggcacgctgg ggcagacacc ggaactccac 1621 actggaacaa caaagaagca ctggtagagt tcaaggacgc acatgccaaa aggcaaactg 1681 tcgtggttct agggagtcaa gaaggagcag ttcacacggc ccttgctgga gctctggagg 1741 ctgagatgga tggtgcaaag ggaaggctgt cctctggcca cttgaaatgt cgcctgaaaa 1801 tggataaact tagattgaag ggcgtgtcat actccttgtg taccgcagcg ttcacattca 1861 ccaagatccc ggctgaaaca ctgcacggga cagtcacagt ggaggtacag tacgcaggga 1921 cagatggacc ttgcaaggtt ccagctcaga tggcggtgga catgcaaact ctgaccccag 1981 ttgggaggtt gataaccgct aaccccgtaa tcactgaaag cactgagaac tctaagatga 2041 tgctggaact tgatccacca tttggggact cttacattgt cataggagtc ggggagaaga 2101 agatcaccca ccactggcac aggagtggca gcaccattgg aaaagcattt gaagccactg 2161 tgagaggtgc caagagaatg gcagtcttgg gagacacagc ctgggacttt ggatcagttg 2221 gaggcgctct caactcattg ggcaagggca tccatcaaat ttttggagca gctttcaaat 2281 cattgtttgg aggaatgtcc tggttctcac aaattctcat tggaacgttg ctgatgtggt 2341 tgggtctgaa cacaaagaat ggatctattt cccttatgtg cttggcctta gggggagtgt 2401 tgatcttctt atccacagcc gtctctgctg atgtggggtg ctcggtggac ttctcaaaga 2461 aggagacgag atgcggtaca ggggtgttcg tctataacga cgttgaagcc tggagggaca 2521 ggtacaagta ccatcctgac tccccccgta gattggcagc agcagtcaag caagcctggg 2581 aagatggtat ctgcgggatc tcctctgttt caagaatgga aaacatcatg tggagatcag 2641 tagaagggga gctcaacgca atcctggaag agaatggagt tcaactgacg gtcgttgtgg 2701 gatctgtaaa aaaccccatg tggagaggtc cacagagatt gcccgtgcct gtgaacgagc 2761 tgccccacgg ctggaaggct tgggggaaat cgtacttcgt cagagcagca aagacaaata 2821 acagctttgt cgtggatggt gacacactga aggaatgccc actcaaacat agagcatgga 2881 acagctttct tgtggaggat catgggttcg gggtatttca cactagtgtc tggctcaagg 2941 ttagagaaga ttattcatta gagtgtgatc cagccgttat tggaacagct gttaagggaa 3001 aggaggctgt acacagtgat ctaggctact ggattgagag tgagaagaat gacacatgga 3061 ggctgaagag ggcccatctg atcgagatga aaacatgtga atggccaaag tcccacacat 3121 tgtggacaga tggaatagaa gagagtgatc tgatcatacc caagtcttta gctgggccac 3181 tcagccatca caataccaga gagggctaca ggacccaaat gaaagggcca tggcacagtg 3241 aagagcttga aattcggttt gaggaatgcc caggcactaa ggtccacgtg gaggaaacat 3301 gtggaacaag aggaccatct ctgagatcaa ccactgcaag cggaagggtg atcgaggaat 3361 ggtgctgcag ggagtgcaca atgcccccac tgtcgttccg ggctaaagat ggctgttggt 3421 atggaatgga gataaggccc aggaaagaac cagaaagcaa cttagtaagg tcaatggtga 3481 ctgcaggatc aactgatcac atggatcact tctcccttgg agtgcttgtg attctgctca 3541 tggtgcagga agggctgaag aagagaatga ccacaaagat catcataagc acatcaatgg 3601 cagtgctggt agctatgatc ctgggaggat tttcaatgag tgacctggct aagcttgcaa 3661 ttttgatggg tgccaccttc gcggaaatga acactggagg agatgtagct catctggcgc 3721 tgatagcggc attcaaagtc agaccagcgt tgctggtatc tttcatcttc agagctaatt 3781 ggacaccccg tgaaagcatg ctgctggcct tggcctcgtg tcttttgcaa actgcgatct 3841 ccgccttgga aggcgacctg atggttctca tcaatggttt tgctttggcc tggttggcaa 3901 tacgagcgat ggttgttcca cgcactgata acatcacctt ggcaatcctg gctgctctga 3961 caccactggc ccggggcaca ctgcttgtgg cgtggagagc aggccttgct acttgtgggg 4021 ggtttatgct cctctctctg aagggaaaag gcagtgtgaa gaagaactta ccatttgtca 4081 tggccctggg actaaccgct gtgaggctgg tcgaccccat caacgtggtg ggactgctgt 4141 tgctcacaag gagtgggaag cggagctggc cccctagcga agtactcaca gctgttggcc 4201 tgatatgcgc attggctgga gggttcgcca aggcagatat agagatggct gggcccatgg 4261 ccgcggtcgg tctgctaatt gtcagttacg tggtctcagg aaagagtgtg gacatgtaca 4321 ttgaaagagc aggtgacatc acatgggaaa aagatgcgga agtcactgga aacagtcccc 4381 ggctcgatgt ggcgctagat gagagtggtg atttctccct ggtggaggat gacggtcccc 4441 ccatgagaga gatcatactc aaggtggtcc tgatgaccat ctgtggcatg aacccaatag 4501 ccataccctt tgcagctgga gcgtggtacg tatacgtgaa gactggaaaa aggagtggtg 4561 ctctatggga tgtgcctgct cccaaggaag taaaaaaggg ggagaccaca gatggagtgt 4621 acagagtaat gactcgtaga ctgctaggtt caacacaagt tggagtggga gttatgcaag 4681 agggggtctt tcacactatg tggcacgtca caaaaggatc cgcgctgaga agcggtgaag 4741 ggagacttga tccatactgg ggagatgtca agcaggatct ggtgtcatac tgtggtccat 4801 ggaagctaga tgccgcctgg gacgggcaca gcgaggtgca gctcttggcc gtgccccccg 4861 gagagagagc gaggaacatc cagactctgc ccggaatatt taagacaaag gatggggaca 4921 ttggagcggt tgcgctggat tacccagcag gaacttcagg atctccaatc ctagacaagt 4981 gtgggagagt gataggactt tatggcaatg gggtcgtgat caaaaatggg agttatgtta 5041 gtgccatcac ccaagggagg agggaggaag agactcctgt tgagtgcttc gagccttcga 5101 tgctgaagaa gaagcagcta actgtcttag acttgcatcc tggagctggg aaaaccagga 5161 gagttcttcc tgaaatagtc cgtgaagcca taaaaacaag actccgtact gtgatcttag 5221 ctccaaccag ggttgtcgct gctgaaatgg aggaagccct tagagggctt ccagtgcgtt 5281 atatgacaac agcagtcaat gtcacccact ctggaacaga aatcgtcgac ttaatgtgcc 5341 atgccacctt cacttcacgt ctactacagc caatcagagt ccccaactat aatctgtata 5401 ttatggatga ggcccacttc acagatccct caagtatagc agcaagagga tacatttcaa 5461 caagggttga gatgggcgag gcggctgcca tcttcatgac cgccacgcca ccaggaaccc 5521 gtgacgcatt tccggactcc aactcaccaa ttatggacac cgaagtggaa gtcccagaga 5581 gagcctggag ctcaggcttt gattgggtga cggatcattc tggaaaaaca gtttggtttg 5641 ttccaagcgt gaggaacggc aatgagatcg cagcttgtct gacaaaggct ggaaaacggg 5701 tcatacagct cagcagaaag acttttgaga cagagttcca gaaaacaaaa catcaagagt 5761 gggactttgt cgtgacaact gacatttcag agatgggcgc caactttaaa gctgaccgtg 5821 tcatagattc caggagatgc ctaaagccgg tcatacttga tggcgagaga gtcattctgg 5881 ctggacccat gcctgtcaca catgccagcg ctgcccagag gagggggcgc ataggcagga 5941 atcccaacaa acctggagat gagtatctgt atggaggtgg gtgcgcagag actgacgaag 6001 accatgcaca ctggcttgaa gcaagaatgc tccttgacaa tatttacctc caagatggcc 6061 tcatagcttc gctctatcga cctgaggccg acaaagtagc agccattgag ggagagttca 6121 agcttaggac ggagcaaagg aagacctttg tggaactcat gaaaagagga gatcttcctg 6181 tttggctggc ctatcaggtt gcatctgccg gaataaccta cacagataga agatggtgct 6241 ttgatggcac gaccaacaac accataatgg aagacagtgt gccggcagag gtgtggacca 6301 gacacggaga gaaaagagtg ctcaaaccga ggtggatgga cgccagagtt tgttcagatc 6361 atgcggccct gaagtcattc aaggagtttg ccgctgggaa aagaggagcg gcttttggag 6421 tgatggaagc cctgggaaca ctgccaggac acatgacaga gagattccag gaagccattg 6481 acaacctcgc tgtgctcatg cgggcagaga ctggaagcag gccttacaaa gccgcggcgg 6541 cccaattgcc ggagacccta gagaccatta tgcttttggg gttgctggga acagtctcgc 6601 tgggaatctt tttcgtcttg atgaggaaca agggcatagg gaagatgggc tttggaatgg 6661 tgactcttgg ggccagcgca tggctcatgt ggctctcgga aattgagcca gccagaattg 6721 catgtgtcct cattgttgtg ttcctattgc tggtggtgct catacctgag ccagaaaagc 6781 aaagatctcc ccaggacaac caaatggcaa tcatcatcat ggtagcagta ggtcttctgg 6841 gcttgattac cgccaatgaa ctcggatggt tggagagaac aaagagtgac ctaagccatc 6901 taatgggaag gagagaggag ggggcaacca taggattctc aatggacatt gacctgcggc 6961 cagcctcagc ttgggccatc tatgctgcct tgacaacttt cattacccca gccgtccaac 7021 atgcagtgac cacttcatac aacaactact ccttaatggc gatggccacg caagctggag 7081 tgttgtttgg tatgggcaaa gggatgccat tctacgcatg ggactttgga gtcccgctgc 7141 taatgatagg ttgctactca caattaacac ccctgaccct aatagtggcc atcattttgc 7201 tcgtggcgca ctacatgtac ttgatcccag ggctgcaggc agcagctgcg cgtgctgccc 7261 agaagagaac ggcagctggc atcatgaaga accctgttgt ggatggaata gtggtgactg 7321 acattgacac aatgacaatt gacccccaag tggagaaaaa gatgggacag gtgctactca 7381 tagcagtagc cgtctccagc gccatactgt cgcggaccgc ctgggggtgg ggggaggctg 7441 gggccctgat cacagctgca acttccactt tgtgggaagg ctctccgaac aagtactgga 7501 actcctctac agccacttca ctgtgtaaca tttttagggg aagttacttg gctggagctt 7561 ctctaatcta cacagtaaca agaaacgctg gcttggtcaa gagacgtggg ggtggaacag 7621 gagagaccct gggagagaaa tggaaggccc gcttgaacca gatgtcggcc ctggagttct 7681 actcctacaa aaagtcaggc atcaccgagg tgtgcagaga agaggcccgc cgcgccctca 7741 aggacggtgt ggcaacggga ggccatgctg tgtcccgagg aagtgcaaag ctgagatggt 7801 tggtggagcg gggatacctg cagccctatg gaaaggtcat tgatcttgga tgtggcagag 7861 ggggctggag ttactacgcc gccaccatcc gcaaagttca agaagtgaaa ggatacacaa 7921 aaggaggccc tggtcatgaa gaacccatgt tggtgcaaag ctatgggtgg aacatagtcc 7981 gtcttaagag tggggtggac gtctttcata tggcggctga gccgtgtgac acgttgctgt 8041 gtgacatagg tgagtcatca tctagtcctg aagtggaaga agcacggacg ctcagagtcc 8101 tctccatggt gggggattgg cttgaaaaaa gaccaggagc cttttgtata aaagtgttgt 8161 gcccatacac cagcactatg atggaaaccc tggagcgact gcagcgtagg tatgggggag 8221 gactggtcag agtgccactc tcccgcaact ctacacatga gatgtactgg gtctctggag 8281 cgaaaagcaa caccataaaa agtgtgtcca ccacgagcca gctcctcttg gggcgcatgg 8341 acgggcctag gaggccagtg aaatatgagg aggatgtgaa tctcggctct ggcacgcggg 8401 ctgtggtaag ctgcgctgaa gctcccaaca tgaagatcat tggtaaccgc attgaaagga 8461 tccgcagtga gcacgcggaa acgtggttct ttgacgagaa ccacccatat aggacatggg 8521 cttaccatgg aagctatgag gcccccacac aagggtcagc gtcctctcta ataaacgggg 8581 ttgtcaggct cctgtcaaaa ccctgggatg tggtgactgg agtcacagga atagccatga 8641 ccgacaccac accgtatggt cagcaaagag ttttcaagga aaaagtggac actagggtgc 8701 cagaccccca agaaggcact cgtcaggtta tgagcatggt ctcttcctgg ttgtggaaag 8761 agctaggcaa acacaaacgg ccacgagtct gtaccaaaga agagttcatc aacaaggttc 8821 gtagcaatgc agcattaggg gcaatatttg aagaggaaaa agagtggaag actgcagtgg 8881 aagctgtgaa cgatccaagg ttctgggctc tagtggacaa ggaaagagag caccacctga 8941 gaggagagtg ccagagttgt gtgtacaaca tgatgggaaa aagagaaaag aaacaagggg 9001 aatttggaaa ggccaagggc agccgcgcca tctggtatat gtggctaggg gctagatttc 9061 tagagttcga agcccttgga ttcttgaacg aggatcactg gatggggaga gagaactcag 9121 gaggtggtgt tgaagggctg ggattacaaa gactcggata tgtcctagaa gagatgagtc 9181 gcataccagg aggaaggatg tatgcagatg acactgctgg ctgggacacc cgcatcagca 9241 ggtttgatct ggagaatgaa gctctaatca ccaaccaaat ggagaaaggg cacagggcct 9301 tggcattggc cataatcaag tacacatacc aaaacaaagt ggtaaaggtc cttagaccag 9361 ctgaaaaagg gaagacagtt atggacatta tttcgagaca agaccaaagg gggagcggac 9421 aagttgtcac ttacgctctt aacacattta ccaacctagt ggtgcaactc attcggaata 9481 tggaggctga ggaagttcta gagatgcaag acttgtggct gctgcggagg tcagagaaag 9541 tgaccaactg gttgcagagc aacggatggg ataggctcaa acgaatggca gtcagtggag 9601 atgattgcgt tgtgaagcca attgatgata ggtttgcaca tgccctcagg ttcttgaatg 9661 atatgggaaa agttaggaag gacacacaag agtggaaacc ctcaactgga tgggacaact 9721 gggaagaagt tccgttttgc tcccaccact tcaacaagct ccatctcaag gacgggaggt 9781 ccattgtggt tccctgccgc caccaagatg aactgattgg ccgggcccgc gtctctccag 9841 gggcgggatg gagcatccgg gagactgctt gcctagcaaa atcatatgcg caaatgtggc 9901 agctccttta tttccacaga agggacctcc gactgatggc caatgccatt tgttcatctg 9961 tgccagttga ctgggttcca actgggagaa ctacctggtc aatccatgga aagggagaat 10021 ggatgaccac tgaagacatg cttgtggtgt ggaacagagt gtggattgag gagaacgacc 10081 acatggaaga caagacccca gttacgaaat ggacagacat tccctatttg ggaaaaaggg 10141 aagacttgtg gtgtggatct ctcatagggc acagaccgcg caccacctgg gctgagaaca 10201 ttaaaaacac agtcaacatg gtgcgcagga tcataggtga tgaagaaaag tacatggact 10261 acctatccac ccaagttcgc tacttgggtg aagaagggtc tacacctgga gtgctgtaag 10321 caccaatctt agtgttgtca ggcctgctag tcagccacag cttggggaaa gctgtgcagc 10381 ctgtgacccc cccaggagaa gctgggaaac caagcctata gtcaggccga gaacgccatg 10441 gcacggaaga agccatgctg cctgtgagcc cctcagagga cactgagtca aaaaacccca 10501 cgcgcttgga ggcgcaggat gggaaaagaa ggtggcgacc ttccccaccc ttcaatctgg 10561 ggcctgaact ggagatcagc tgtggatc Link to comment Share on other sites 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niman Posted August 16, 2016 Author Report Share Posted August 16, 2016 Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 18525 18525 100% 0.0 100% KX447510.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 18480 18480 100% 0.0 99% KX447512.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 18480 18480 100% 0.0 99% KX369547.1 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 18474 18474 100% 0.0 99% KX447509.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 18471 18471 100% 0.0 99% KX447513.1 Select seq gb|KJ776791.1| Zika virus strain H/PF/2013 polyprotein gene, complete cds 18471 18471 100% 0.0 99% KJ776791.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 18465 18465 100% 0.0 99% KX447515.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 18465 18465 100% 0.0 99% KX447511.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 18462 18462 100% 0.0 99% KX447514.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 18462 18462 100% 0.0 99% KU509998.3 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 18456 18456 100% 0.0 99% KX447516.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 18444 18444 100% 0.0 99% KX051563.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 18438 18438 100% 0.0 99% KX280026.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 18438 18438 100% 0.0 99% KU991811.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 18438 18438 100% 0.0 99% KU321639.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 18429 18429 100% 0.0 99% KU729218.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 18429 18429 100% 0.0 99% KU707826.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 18429 18429 100% 0.0 99% KU365779.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 18426 18426 100% 0.0 99% KX447517.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 18426 18426 100% 0.0 99% KX262887.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 18426 18426 100% 0.0 99% KX197192.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 18417 18417 100% 0.0 99% KX198135.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 18417 18417 100% 0.0 99% KU926309.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 18417 18417 100% 0.0 99% KU365780.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 18411 18411 100% 0.0 99% KU940228.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 18411 18411 100% 0.0 99% KU647676.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 18411 18411 100% 0.0 99% KU365777.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 18408 18408 100% 0.0 99% KU758877.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 18408 18408 100% 0.0 99% KX247646.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 18408 18408 100% 0.0 99% KX156776.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 18408 18408 100% 0.0 99% KU501217.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 18404 18404 99% 0.0 99% KU497555.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 18402 18402 100% 0.0 99% KX156774.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 18402 18402 100% 0.0 99% KU729217.2 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 18402 18402 100% 0.0 99% KU527068.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 18402 18402 100% 0.0 99% KU501216.1 Select seq gb|KU820897.3| Zika virus isolate FLR polyprotein gene, complete cds 18399 18399 100% 0.0 99% KU820897.3 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 18399 18399 100% 0.0 99% KX247632.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 18399 18399 100% 0.0 99% KX156775.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 18399 18399 100% 0.0 99% KX087102.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 18399 18399 100% 0.0 99% KU365778.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 18399 18399 100% 0.0 99% KU312312.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 18393 18393 100% 0.0 99% KX520666.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 18393 18393 100% 0.0 99% KU922960.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 18390 18390 100% 0.0 99% KX548902.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 18390 18390 100% 0.0 99% KX446951.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 18390 18390 100% 0.0 99% KU937936.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 18390 18390 100% 0.0 99% KU926310.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 18390 18390 100% 0.0 99% KU922923.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 18390 18390 100% 0.0 99% KU501215.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 18384 18384 100% 0.0 99% KX601168.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 18384 18384 100% 0.0 99% KX446950.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 18384 18384 100% 0.0 99% KX087101.2 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 18384 18384 100% 0.0 99% KX117076.1 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 18384 18384 100% 0.0 99% KU870645.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 18381 18381 100% 0.0 99% KX377337.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 18381 18381 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 18379 18379 100% 0.0 99% KU853012.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 18375 18375 100% 0.0 99% KX185891.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 18375 18375 100% 0.0 99% KU963796.1 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 18372 18372 100% 0.0 99% KX253996.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 18372 18372 100% 0.0 99% KU955589.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 18372 18372 100% 0.0 99% KU820898.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 18372 18372 100% 0.0 99% KU820899.2 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 18368 18368 100% 0.0 99% KX266255.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 18366 18366 100% 0.0 99% KU866423.2 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 18366 18366 100% 0.0 99% KX056898.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 18366 18366 100% 0.0 99% KU955590.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 18363 18363 100% 0.0 99% KU740184.2 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 18363 18363 100% 0.0 99% KU761564.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 18357 18357 100% 0.0 99% KX673530.1 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 18321 18321 99% 0.0 99% KU940224.1 Select seq gb|KU744693.1| Zika virus isolate VE_Ganxian, complete genome 18213 18213 100% 0.0 99% KU744693.1 Select seq gb|KU681081.3| Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome 18132 18132 100% 0.0 99% KU681081.3 Select seq gb|KU955593.1| Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome 17825 17825 100% 0.0 98% KU955593.1 Select seq gb|JN860885.1| Zika virus isolate FSS13025 polyprotein gene, partial cds 17825 17825 99% 0.0 99% JN860885.1 Select seq gb|KF993678.1| Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds 17793 17793 98% 0.0 99% KF993678.1 Select seq gb|EU545988.1| Zika virus polyprotein gene, complete cds 17676 17676 100% 0.0 98% EU545988.1 Select seq gb|KU681082.3| Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome 17524 17524 100% 0.0 98% KU681082.3 Select seq gb|KX601167.1| Zika virus strain ZIKV/Aedes sp./MYS/P6-740/1966, complete genome 16491 16491 100% 0.0 96% KX601167.1 Select seq gb|HQ234499.1| Zika virus isolate P6-740 polyprotein gene, partial cds 16484 16484 99% 0.0 96% HQ234499.1 Select seq gb|KX377336.1| Zika virus strain P6-740, complete genome 16478 16478 100% 0.0 96% KX377336.1 Select seq gb|KX447518.1| Zika virus isolate 1_0117_PF polyprotein gene, partial cds 16310 16310 88% 0.0 99% KX447518.1 Link to comment Share on other sites More sharing options...
niman Posted August 20, 2016 Author Report Share Posted August 20, 2016 Zika virus isolate 1_0087_PF polyprotein gene, complete cds 10,587 bp linear RNA Accession:  KX447509.1  GI:  1041521210 GenBankFASTAGraphicsPopSet Select item 10415212125. Zika virus isolate 1_0049_PF polyprotein gene, complete cds 10,588 bp linear RNA Accession:  KX447510.1  GI:  1041521212 GenBankFASTAGraphicsPopSet Select item 10415212146. Zika virus isolate 1_0015_PF polyprotein gene, complete cds 10,585 bp linear RNA Accession:  KX447511.1  GI:  1041521214 GenBankFASTAGraphicsPopSet Select item 10415212167. Zika virus isolate 1_0181_PF polyprotein gene, complete cds 10,586 bp linear RNA Accession:  KX447512.1  GI:  1041521216 GenBankFASTAGraphicsPopSet Select item 10415212188. Zika virus isolate 1_0134_PF polyprotein gene, complete cds 10,634 bp linear RNA Accession:  KX447513.1  GI:  1041521218 GenBankFASTAGraphicsPopSet Select item 10415212209. Zika virus isolate 1_0035_PF polyprotein gene, complete cds 10,588 bp linear RNA Accession:  KX447514.1  GI:  1041521220 GenBankFASTAGraphicsPopSet Select item 104152122210. Zika virus isolate 1_0030_PF polyprotein gene, complete cds 10,588 bp linear RNA Accession:  KX447515.1  GI:  1041521222 GenBankFASTAGraphicsPopSet Select item 104152122411. Zika virus isolate 1_0111_PF polyprotein gene, complete cds 10,654 bp linear RNA Accession:  KX447516.1  GI:  1041521224 GenBankFASTAGraphicsPopSet Select item 104152122612. Zika virus isolate 1_0038_PF polyprotein gene, complete cds 10,654 bp linear RNA Accession:  KX447517.1  GI:  1041521226 GenBankFASTAGraphicsPopSet Select item 104152122813. Zika virus isolate 1_0117_PF polyprotein gene, partial cds 9,146 bp linear RNA Accession:  KX447518.1  GI:  1041521228 GenBankFASTAGraphicsPopSet Select item 104152123014. Zika virus isolate 1_0199_PF polyprotein gene, partial cds 9,142 bp linear RNA Accession:  KX447519.1  GI:  1041521230 GenBankFASTAGraphicsPopSet Select item 104152123215. Zika virus isolate 1_0016_PF polyprotein gene, partial cds 9,725 bp linear RNA Accession:  KX447520.1  GI:  1041521232 GenBankFASTAGraphicsPopSet Select item 104152123416. Zika virus isolate 1_0080_PF polyprotein gene, partial cds 9,358 bp linear RNA Accession:  KX447521.1  GI:  1041521234 GenBankFASTAGraphicsPopSet Link to comment Share on other sites More sharing options...
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