niman Posted August 16, 2016 Report Share Posted August 16, 2016 Public Health England has released a full 2016 Zika sequence from United Kingdom ex-Guadeloupe traveler. Link to comment Share on other sites More sharing options...
niman Posted August 16, 2016 Author Report Share Posted August 16, 2016 LOCUS KX673530 10689 bp RNA linear VRL 14-AUG-2016 DEFINITION Zika virus isolate PHE_semen_Guadeloupe, complete genome. ACCESSION KX673530 VERSION KX673530.1 GI:1050405299 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10689) AUTHORS Atkinson,B., Pullan,S.T., Miles,R.W., Lewandowski,K., Graham,V.A., Dowall,S.D. and Hewson,R. TITLE Complete genomic sequence of Zika virus isolated from a clinical semen sample JOURNAL Unpublished REFERENCE 2 (bases 1 to 10689) AUTHORS Atkinson,B., Pullan,S.T., Miles,R.W., Lewandowski,K., Graham,V.A., Dowall,S.D. and Hewson,R. TITLE Direct Submission JOURNAL Submitted (09-AUG-2016) Research, Public Health England, Manor Farm Road, Salisbury, Wiltshire SP4 0JG, UK COMMENT ##Assembly-Data-START## Assembly Method :: BWA v. 0.7.5 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10689 /organism="Zika virus" /mol_type="genomic RNA" /isolate="PHE_semen_Guadeloupe" /isolation_source="semen" /db_xref="taxon:64320" /country="United Kingdom" /collection_date="21-Apr-2016" /note="passage details: 1 passage c6/36 followed by 1 passage vero; virus contracted while visiting Guadeloupe" CDS 92..10363 /codon_start=1 /product="polyprotein" /protein_id="ANZ46736.1" /db_xref="GI:1050405300" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSVVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLVNGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTIEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGEEEKYMDYLST QVRYLGEEGSTPGVL" ORIGIN 1 gaatcagact gcgacagttc gagtttgaag cgaaagctag caacagtatc aacaggtttt 61 attttggatt tggaaacgag agtttctggt catgaaaaac ccaaaaaaga aatccggagg 121 attccggatt gtcaatatgc taaaacgcgg agtagcccgt gtgagcccct ttgggggctt 181 gaagaggctg ccagccggac ttctgctggg tcatgggccc atcaggatgg tcttggcgat 241 tctagccttt ttgagattca cggcaatcaa gccatcactg ggtctcatca atagatgggg 301 ttcagtgggg aaaaaagagg ctatggaaat aataaagaag ttcaagaaag atctggctgc 361 catgctgaga ataatcaatg ctaggaagga gaagaagaga cgaggcgcag atactagtgt 421 cggaattgtt ggcctcctgc tgaccacagc tatggcagcg gaggtcacta gacgtgggag 481 tgcatactac atgtacttgg acagaaacga tgctggggag gccatatctt ttccaaccac 541 attggggatg aataagtgtt atatacagat catggatctt ggacacatgt gtgatgccac 601 catgagctat gaatgcccta tgctggatga gggggtggaa ccagatgacg tcgattgttg 661 gtgcaacacg acgtcaactt gggttgtgta cggaacctgc catcacaaaa aaggtgaagc 721 acggagatct agaagagctg tgacgctccc ctcccattcc actaggaagc tgcaaacgcg 781 gtcgcaaacc tggttggaat caagagaata cacaaagcac ttgattagag tcgaaaattg 841 gatattcagg aaccctggct tcgcgttagc agcagctgcc atcgcttggc ttttgggaag 901 ctcaacgagc caaaaagtca tatacttggt catgatactg ctgattgccc cggcatacag 961 catcaggtgc ataggagtca gcaataggga ctttgtggaa ggtatgtcag gtgggacttg 1021 ggttgatgtt gtcttggaac atggaggttg tgtcaccgta atggcacagg acaaaccgac 1081 tgtcgacata gagctggtta caacaacagt cagcaacatg gcggaggtga gatcctactg 1141 ctatgaggca tcaatatcag acatggcttc ggacagccgc tgcccaacac aaggtgaagc 1201 ctaccttgac aagcaatcag acactcaata tgtctgcaaa agaacgttag tggacagagg 1261 ctggggaaat ggatgtggac tttttggcaa agggagcctg gtgacatgcg ctaagtttgc 1321 atgctccaag aaaatgaccg ggaagagcat ccagccagag aatctggagt accggataat 1381 gctgtcagtt catggctccc agcacagtgg gatgatcgtt aatgacacag gacatgaaac 1441 tgatgagaat agagcgaagg ttgagataac gcccaattca ccaagagccg aagccaccct 1501 ggggggtttt ggaagcctag gacttgattg tgaaccgagg acaggccttg acttttcaga 1561 tttgtattac ttgactatga ataacaagca ctggttggtt cacaaggagt ggttccacga 1621 cattccatta ccttggcacg ctggggcaga caccggaact ccacactgga acaacaaaga 1681 agcactggta gagttcaagg acgcacatgc caaaaggcaa actgtcgtgg ttctagggag 1741 tcaagaagga gcagttcaca cggcccttgc tggagctctg gaggctgaga tggatggtgc 1801 aaagggaagg ctgtcctctg gccacttgaa atgtcgcctg aaaatggata aacttagatt 1861 gaagggcgtg tcatactcct tgtgtaccgc agcgttcaca ttcaccaaga tcccggctga 1921 aacactgcac gggacagtca cagtggaggt acagtacgca gggacagatg gaccttgcaa 1981 ggttccagct cagatggcgg tggacatgca aactctgacc ccagttggga ggttgataac 2041 cgccaacccc gtaatcactg aaagcactga gaactctaag atgatgctgg aacttgatcc 2101 accatttggg gactcttaca ttgtcatagg agtcggggag aagaagatca cccaccactg 2161 gcacaggagt ggcagcacca ttggaaaagc atttgaagcc actgtgagag gtgccaagag 2221 aatggcagtc ttgggagaca cagcctggga cttcggatca gttggaggcg ctctcaactc 2281 attgggcaag ggcatccatc aaatttttgg agcagctttc aaatcattgt ttggaggaat 2341 gtcctggttc tcacaaatcc tcattggaac gttgctgatg tggttgggtc tgaacacaaa 2401 gaatggatct atttccctca tgtgcttggc cttaggggga gtgttgatct tcttatccac 2461 agccgtctct gctgatgtgg ggtgctcggt ggacttctca aagaaggaga cgagatgcgg 2521 tacaggggtg ttcgtctata acgacgttga agcctggagg gacaggtaca agtaccatcc 2581 tgactccccc cgtagattgg cagcagcagt caagcaagcc tgggaagatg gtatctgcgg 2641 gatctcctct gtttcaagaa tggaaaacat catgtggaga tcagtagaag gggagctcaa 2701 tgcaatcctg gaagagaatg gagttcaact gacggtcgtt gtgggatctg taaaaaaccc 2761 catgtggaga ggtccacaga gattgcccgt gcctgtgaac gagctgcccc acggctggaa 2821 ggcttggggg aaatcgtact tcgttagagc agcaaagaca aataacagct ttgtcgtgga 2881 tggtgacaca ctgaaggaat gcccactcaa acatagagca tggaacagct ttcttgtgga 2941 ggatcatggg ttcggggtat ttcacactag tgtctggctc aaggttagag aagattattc 3001 attagagtgt gatccagccg ttattggaac agctgttaag ggaaaggagg ctgtacacag 3061 tgatctaggc tactggattg agagtgagaa gaatgacaca tggaggctga agagggccca 3121 tctgatcgag atgaaaacat gtgaatggcc aaagtcccac acattgtgga cagatggaat 3181 agaagagagt gatctgatca tacccaagtc tttagctggg ccactcagcc atcacaatac 3241 cagagagggc tacaggaccc aaatgaaagg gccatggcac agtgaagagc ttgaaattcg 3301 gtttgaggaa tgcccaggca ctaaggtcca cgtggaggaa acatgtggaa caagaggacc 3361 atctctgaga tcaaccactg caagcggaag ggtgatcgag gaatggtgct gcagggagtg 3421 cacaatgccc ccactgtcgt tccgggctaa agatggctgt tggtatggaa tggagataag 3481 gcccaggaaa gaaccagaaa gcaacttagt aaggtcagtg gtgactgcag gatcaactga 3541 tcacatggat cacttctccc ttggagtgct tgtgattctg ctcatggtgc aggaagggct 3601 gaagaagaga atgaccacaa agatcatcat aagcacatca atggcagtgc tggtagctat 3661 gatcctggga ggattttcaa tgagtgacct ggctaagctt gcaattttga tgggtgccac 3721 cttcgcggaa atgaacactg gaggagatgt agctcatctg gcgctgatag cggcattcaa 3781 agtcagacca gcgttgctgg tatctttcat cttcagggct aattggacac cccgtgaaag 3841 catgctgctg gccttggcct cgtgtctttt gcaaactgcg atctccgcct tggaaggcga 3901 cctgatggtt ctcatcaatg gttttgcttt ggcctggttg gcaatacgag cgatggttgt 3961 tccacgcact gataacatca ccttggcaat cctggctgct ctgacaccac tggcccgggg 4021 cacactgctt gtggcgtgga gagctggcct tgctacttgc ggggggttta tgctcctctc 4081 tctgaaggga aaaggcagtg tgaagaagaa cttaccattt gtcatggccc tgggactaac 4141 cgctgtgaga ctggtcgacc ccatcaacgt ggtgggactg ctgttgctca caaggagtgg 4201 gaagcggagc tggcccccta gcgaagtact cacagctgtt ggcctgatat gcgcattggc 4261 tggagggttc gccaaggcag atatagagat ggctgggccc atggccgcgg tcggtctgct 4321 aattgtcagt tacgtggtct caggaaagag tgtggacatg tacattgaaa gagcaggtga 4381 catcacatgg gaaaaagatg cggaagtcac tggaaacagt ccccggctcg atgtggcgct 4441 agatgagagt ggtgatttct ccctggtgga ggatgacggt ccccccatga gagagatcat 4501 actcaaggtg gtcctgatga ccatctgtgg catgaaccca atagccatac cctttgcagc 4561 tggagcgtgg tacgtatacg tgaagactgg aaaaaggagt ggtgctctat gggatgtgcc 4621 tgctcccaag gaagtaaaaa agggggagac cacagatgga gtgtacagag taatgactcg 4681 tagactgcta ggttcaacac aagttggagt gggagttatg caagaggggg tctttcacac 4741 tatgtggcac gtcacaaaag gatccgcgct gagaagcggt gaagggagac ttgatccata 4801 ctggggagat gtcaagcagg atctggtgtc atactgtggt ccatggaagc tagatgccgc 4861 ctgggacggg cacagcgagg tgcagctctt ggccgtgccc cccggagaga gagcgaggaa 4921 catccagact ctgcccggaa tatttaagac aaaggatggg gacattggag cggttgcgct 4981 ggattaccca gcaggaactt caggatctcc aatcctagac aagtgtggga gagtgatagg 5041 actttatggc aatggggtcg tgatcaaaaa tgggagttat gttagtgcca tcacccaagg 5101 gaggagggag gaagagactc ctgttgagtg cttcgagcct tcgatgctga agaagaagca 5161 gctaactgtc ttagacttgc accctggagc tgggaaaacc aggagagttc ttcctgaaat 5221 agtccgtgaa gctataaaaa caagactccg tactgtgatc ttagctccaa ccagggttgt 5281 cgctgctgaa atggaggaag cccttagagg gcttccagtg cgttatatga caacagcagt 5341 caatgtcacc cattctggaa cagaaatcgt cgacttaatg tgccatgcca ccttcacttc 5401 acgtctacta cagccaatca gagtccccaa ctataatctg tatattatgg atgaggccca 5461 cttcacagat ccctcaagta tagcagcaag aggatacatt tcaacaaggg ttgagatggg 5521 cgaggcggct gccatcttca tgaccgccac gccaccagga acccgtgacg catttccgga 5581 ctccaactca ccaattatgg acaccgaagt ggaagtccca gagagagcct ggagctcagg 5641 ctttgattgg gtgacggatc attctggaaa aacagtttgg tttgttccaa gcgtgaggaa 5701 cggcaatgag atcgcagctt gtctgacaaa ggctggaaaa cgggtcatac agctcagcag 5761 aaagactttt gagacagagt tccagaaaac aaaacatcaa gagtgggact ttgtcgtgac 5821 aaccgacatt tcagagatgg gcgccaactt taaagctgac cgtgtcatag attccaggag 5881 atgcctaaag ccggtcatac ttgatggcga gagagtcatt ctggctggac ccatgcctgt 5941 cacacatgcc agcgctgccc agaggagggg gcgcataggc aggaatccca acaaacctgg 6001 agatgagtat ctgtatggag gtgggtgcgc agagactgac gaagaccatg cacactggct 6061 tgaagcaaga atgctccttg acaatattta cctccaagat ggcctcatag cctcgctcta 6121 tcgacctgag gccgacaaag tagcagccat tgagggagag ttcaagctta ggacggagca 6181 aaggaagacc tttgtggaac tcatgaaaag aggagatctt cctgtttggc tggcctatca 6241 ggttgcatct gccggaataa cttacacaga tagaagatgg tgctttgatg gcacgaccaa 6301 caacaccata atggaagaca gtgtgccggc agaggtgtgg accagacacg gagagaaaag 6361 agtgctcaaa ccgaggtgga tggacgccag agtttgttca gatcatgcgg ccctgaagtc 6421 attcaaggag tttgccgctg ggaaaagagg agcggctttt ggagtgatgg aagccctggg 6481 aacactgcca ggacacatga cagagagatt ccaggaagcc attgacaacc tcgctgtgct 6541 catgcgggca gagactggaa gcaggcctta caaagccgcg gcggcccaat tgccggagac 6601 cctagagacc attatgcttt tggggttgct gggaacagtc tcgctgggaa tctttttcgt 6661 cttgatgagg aacaagggca tagggaagat gggctttgga atggtgactc ttggggccag 6721 cgcatggctc atgtggctct cggaaattga gccagccaga attgcatgtg tcctcattgt 6781 tgtgttccta ttgctggtgg tgctcatacc tgagccagaa aagcaaagat ctccccagga 6841 caaccaaatg gcaatcatca tcatggtagc agtaggtctt ctgggcttga tcaccgccaa 6901 tgaactcgga tggttggaga gaacaaagag tgacctaagc catctaatgg gaaggagaga 6961 ggagggggca accataggat tctcaatgga cattgacctg cggccagcct cagcttgggc 7021 catctatgct gccttgacaa ctttcattac cccagccgtc caacatgcag tgaccacttc 7081 atacaacaac tactccttaa tggcgatggc cacgcaagct ggagtgttgt ttggtatggg 7141 caaagggatg ccattctacg catgggactt tggagtcccg ctgctaatga taggttgcta 7201 ctcacaatta acacccctga ccctaatagt ggccatcatt ttgctcgtgg cgcactacat 7261 gtacttgatc ccagggctgc aggcagcagc tgcgcgtgct gcccagaaga gaacggcagc 7321 tggcatcatg aagaaccctg tcgtggatgg aatagtggtg actgacattg acacaatgac 7381 aattgacccc caagtggaga aaaagatggg acaggtgcta ctcatagcag tagccgtctc 7441 cagcgccata ctgtcgcgga ccgcctgggg gtggggggag gctggggccc tgatcacagc 7501 cgcaacttcc actttgtggg aaggctctcc gaacaagtac tggaactcct ctacagccac 7561 ttcactgtgt aacattttta ggggaagtta cttggctgga gcttctctaa tctacacagt 7621 aacaagaaac gctggcttgg tcaagagacg tgggggtgga acaggagaga ccctgggaga 7681 gaaatggaag gcccgcttga accagatgtc ggccctggag ttctactcct acaaaaagtc 7741 aggcatcacc gaggtgtgca gagaagaggc ccgccgcgcc ctcaaggacg gtgtggcaac 7801 gggaggccat gctgtgtccc gaggaagtgc aaagctgaga tggttggtgg agcggggata 7861 cctgcagccc tatggaaagg tcattgatct tggatgtggc agagggggct ggagttacta 7921 cgccgccacc atccgcaaag ttcaagaagt gaaaggatac acaaaaggag gccctggtca 7981 tgaagaaccc gtgttggtgc agagctatgg gtggaacata gtccgtctca agagtggggt 8041 ggacgtcttt catatggcgg ctgagccgtg tgacacgttg ctgtgtgaca taggtgagtc 8101 atcatctagt cctgaagtgg aagaagcacg gacgctcaga gtcctctcca tggtggggga 8161 ttggcttgaa aaaagaccag gagccttttg tataaaagtg ttgtgcccat acaccagcac 8221 tatgatggaa accctggagc ggctgcagcg taggtatggg ggaggactgg tcagagtgcc 8281 actctcccgc aactctacac atgagatgta ctgggtctct ggagcgaaaa gcaacaccat 8341 aaaaagtgtg tccaccacga gccagctcct cttggggcgc atggacgggc ctaggaggcc 8401 agtgaaatat gaggaggatg tgaatctcgg ctctggcacg cgggctgtgg taagctgcgc 8461 tgaagctccc aacatgaaga tcattggtaa ccgcattgaa aggatccgca gtgagcacgc 8521 ggaaacgtgg ttctttgacg agaaccaccc atataggaca tgggcttacc atggaagcta 8581 tgaggccccc acacaagggt cagcatcctc tctagtaaac ggggttgtca ggctcctgtc 8641 aaaaccctgg gatgtggtga ctggagtcac aggaatagcc atgaccgaca ccacaccgta 8701 tggtcagcaa agagttttca aggaaaaagt ggacactagg gtgccagacc cccaagaagg 8761 cactcgtcag gttatgagca tggtctcttc ctggttgtgg aaagagctag gcaaacacaa 8821 acggccacga gtctgtacca aagaagagtt catcaacaag gttcgtagca atgcagcatt 8881 aggggcaata tttgaagagg aaaaagagtg gaagactgca gtggaagctg tgaacgatcc 8941 aaggttctgg gctctagtgg acaaggaaag agagcaccac ctgagaggag agtgccagag 9001 ttgtgtgtac aacatgatgg gaaaaagaga aaagaaacaa ggggaatttg gaaaggccaa 9061 gggcagccgc gccatctggt atatgtggct aggggctaga tttttagagt tcgaagccct 9121 tggattcttg aacgaggatc actggatggg gagagagaac tcaggaggtg gtgttgaagg 9181 gctgggatta caaagactcg gatatgtcct agaagagatg agtcgcatac caggaggaag 9241 gatgtatgca gatgacactg ctggctggga tacccgcatc agcaggtttg atctagagaa 9301 tgaagctcta atcaccaacc aaatggagaa agggcacagg gccttggcat tggccataat 9361 caagtacaca taccaaaaca aagtggtaaa ggtccttaga ccagctgaaa aagggaaaac 9421 agttatggac attatttcga gacaagacca aagggggagc ggacaagttg tcacttacgc 9481 tcttaacaca tttaccaacc tagtggtgca actcattcgg aatatggagg ctgaggaagt 9541 tctagagatg caagacttgt ggctgctgcg gaggtcagag aaagtgacca actggttgca 9601 gagcaacgga tgggataggc tcaaacgaat ggcagtcagt ggagatgatt gcgttgtgaa 9661 gccaattgat gataggtttg cacatgccct caggttcttg aatgatatgg gaaaagttag 9721 gaaggacaca caagagtgga aaccctcaac tggatgggac aactgggaag aagttccgtt 9781 ttgctcccac cacttcaaca agctccatct caaggacggg aggtccattg tggttccctg 9841 ccgccaccaa gatgaactga ttggccgggc ccgcgtctct ccaggggcgg gatggagcat 9901 ccgggagact gcttgcctag caaaatcata tgcgcaaatg tggcagctcc tttatttcca 9961 cagaagggac ctccgactga tggccaatgc catttgctca tctgtgccag ttgactgggt 10021 tccaactggg agaactacct ggtcaatcca tggaaaggga gaatggatga ccattgaaga 10081 catgcttgtg gtgtggaaca gagtgtggat tgaggagaac gaccacatgg aagacaagac 10141 cccagttacg aaatggacag acattcccta tttgggaaaa agggaagact tgtggtgtgg 10201 atctctcata gggcacagac cgcgcaccac ctgggctgag aacattaaaa acacagtcaa 10261 catggtgcgc aggatcatag gtgaggaaga aaagtacatg gactacctat ccacccaagt 10321 tcgctacttg ggtgaagaag ggtctacacc tggagtgctg taagcaccaa tcttaatgtt 10381 gtcaggcctg ctagtcagcc acagcttggg gaaagctgtg cagcctgtga cccccccagg 10441 agaagctggg aaaccaagcc tatagtcagg ccgagaacgc catggcacgg aagaagccat 10501 gctgcctgtg agcccctcag aggacactga gtcaaaaaac cccacgcgct tggaggcgca 10561 ggatgggaaa agaaggtggc gaccttcccc acccttcaat ctggggcctg aactggagat 10621 cagctgtgga tctccagaag agggactagt ggttagagga gaccccccgg aaaacgcaaa 10681 acagcatat Link to comment Share on other sites More sharing options...
niman Posted August 16, 2016 Author Report Share Posted August 16, 2016 Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 18525 18525 100% 0.0 100% KX673530.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 18438 18438 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 18438 18438 100% 0.0 99% KU853012.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 18357 18357 100% 0.0 99% KX447510.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 18348 18348 100% 0.0 99% KX447512.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 18348 18348 100% 0.0 99% KX369547.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 18348 18348 100% 0.0 99% KU509998.3 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 18345 18345 100% 0.0 99% KX447509.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 18345 18345 100% 0.0 99% KX280026.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 18345 18345 100% 0.0 99% KU991811.1 Select seq gb|KJ776791.1| Zika virus strain H/PF/2013 polyprotein gene, complete cds 18345 18345 100% 0.0 99% KJ776791.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 18339 18339 100% 0.0 99% KX447513.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 18336 18336 100% 0.0 99% KX447515.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 18336 18336 100% 0.0 99% KX447511.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 18336 18336 100% 0.0 99% KU729217.2 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 18336 18336 100% 0.0 99% KU321639.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 18330 18330 100% 0.0 99% KX447514.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 18330 18330 100% 0.0 99% KX051563.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 18327 18327 100% 0.0 99% KX447516.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 18327 18327 100% 0.0 99% KU940228.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 18327 18327 100% 0.0 99% KU729218.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 18327 18327 100% 0.0 99% KU707826.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 18327 18327 100% 0.0 99% KU365779.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 18321 18321 100% 0.0 99% KX262887.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 18321 18321 100% 0.0 99% KX197192.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 18321 18321 100% 0.0 99% KU926309.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 18318 18318 100% 0.0 99% KU527068.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 18312 18312 100% 0.0 99% KX198135.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 18312 18312 100% 0.0 99% KU926310.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 18312 18312 100% 0.0 99% KU365780.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 18309 18309 100% 0.0 99% KX520666.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 18309 18309 100% 0.0 99% KU647676.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 18309 18309 100% 0.0 99% KU365777.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 18303 18303 100% 0.0 99% KX447517.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 18303 18303 100% 0.0 99% KU758877.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 18303 18303 100% 0.0 99% KX247646.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 18303 18303 100% 0.0 99% KX156776.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 18303 18303 100% 0.0 99% KU501217.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 18300 18300 100% 0.0 99% KX156774.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 18300 18300 99% 0.0 99% KU497555.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 18300 18300 100% 0.0 99% KU501216.1 Select seq gb|KU820897.3| Zika virus isolate FLR polyprotein gene, complete cds 18294 18294 100% 0.0 99% KU820897.3 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 18294 18294 100% 0.0 99% KX247632.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 18294 18294 100% 0.0 99% KX156775.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 18294 18294 100% 0.0 99% KX087102.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 18294 18294 100% 0.0 99% KU365778.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 18294 18294 100% 0.0 99% KU312312.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 18291 18291 100% 0.0 99% KU922960.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 18285 18285 100% 0.0 99% KX548902.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 18285 18285 100% 0.0 99% KX446951.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 18285 18285 100% 0.0 99% KU937936.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 18285 18285 100% 0.0 99% KU922923.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 18285 18285 100% 0.0 99% KU501215.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 18282 18282 100% 0.0 99% KX601168.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 18282 18282 100% 0.0 99% KX446950.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 18282 18282 100% 0.0 99% KX087101.2 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 18282 18282 100% 0.0 99% KU870645.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 18276 18276 100% 0.0 99% KX377337.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 18267 18267 100% 0.0 99% KU820898.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 18264 18264 100% 0.0 99% KX056898.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 18264 18264 100% 0.0 99% KU955590.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 18258 18258 100% 0.0 99% KU740184.2 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 18258 18258 100% 0.0 99% KU761564.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 18254 18254 100% 0.0 99% KX117076.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 18245 18245 100% 0.0 99% KX185891.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 18245 18245 100% 0.0 99% KU963796.1 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 18240 18240 100% 0.0 99% KX253996.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 18240 18240 100% 0.0 99% KU955589.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 18240 18240 100% 0.0 99% KU820899.2 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 18236 18236 100% 0.0 99% KX266255.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 18236 18236 100% 0.0 99% KU866423.2 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 18231 18231 99% 0.0 99% KU940224.1 Select seq gb|KU744693.1| Zika virus isolate VE_Ganxian, complete genome 18101 18101 100% 0.0 99% KU744693.1 Select seq gb|KU681081.3| Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome 18011 18011 100% 0.0 99% KU681081.3 Select seq gb|KU955593.1| Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome 17704 17704 100% 0.0 98% KU955593.1 Select seq gb|JN860885.1| Zika virus isolate FSS13025 polyprotein gene, partial cds 17703 17703 99% 0.0 98% JN860885.1 Select seq gb|KF993678.1| Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds 17667 17667 98% 0.0 99% KF993678.1 Select seq gb|EU545988.1| Zika virus polyprotein gene, complete cds 17549 17549 100% 0.0 98% EU545988.1 Select seq gb|KU681082.3| Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome 17401 17401 100% 0.0 98% KU681082.3 Select seq gb|KX601167.1| Zika virus strain ZIKV/Aedes sp./MYS/P6-740/1966, complete genome 16374 16374 100% 0.0 95% KX601167.1 Select seq gb|HQ234499.1| Zika virus isolate P6-740 polyprotein gene, partial cds 16366 16366 99% 0.0 95% HQ234499.1 Select seq gb|KX377336.1| Zika virus strain P6-740, complete genome 16361 16361 100% 0.0 95% KX377336.1 Select seq gb|KX447518.1| Zika virus isolate 1_0117_PF polyprotein gene, partial cds 16208 16208 88% 0.0 99% KX447518.1 Link to comment Share on other sites More sharing options...
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