niman Posted August 29, 2016 Report Posted August 29, 2016 LOCUS KX766029 10749 bp RNA linear VRL 26-AUG-2016 DEFINITION Zika virus isolate R116265, complete genome. ACCESSION KX766029 VERSION KX766029.1 GI:1059853344 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10749) AUTHORS Lanciotti,R.S. TITLE Direct Submission JOURNAL Submitted (23-AUG-2016) Diagnostic & Reference Laboratory, Arbovirus Diseases Branch, Centers for Disease Control & Prevention, 3150 Rampart Road, Fort Collins, CO 80521, USA COMMENT ##Assembly-Data-START## Assembly Method :: CLC Genomics Workbench v. 7 Sequencing Technology :: IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10749 /organism="Zika virus" /mol_type="genomic RNA" /isolate="R116265" /host="Homo sapiens" /db_xref="taxon:64320" /country="Mexico" /collection_date="23-Jun-2016"
niman Posted August 29, 2016 Author Report Posted August 29, 2016 LOCUS KX766029 10749 bp RNA linear VRL 26-AUG-2016 DEFINITION Zika virus isolate R116265, complete genome. ACCESSION KX766029 VERSION KX766029.1 GI:1059853344 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10749) AUTHORS Lanciotti,R.S. TITLE Direct Submission JOURNAL Submitted (23-AUG-2016) Diagnostic & Reference Laboratory, Arbovirus Diseases Branch, Centers for Disease Control & Prevention, 3150 Rampart Road, Fort Collins, CO 80521, USA COMMENT ##Assembly-Data-START## Assembly Method :: CLC Genomics Workbench v. 7 Sequencing Technology :: IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10749 /organism="Zika virus" /mol_type="genomic RNA" /isolate="R116265" /host="Homo sapiens" /db_xref="taxon:64320" /country="Mexico" /collection_date="23-Jun-2016" CDS 103..10374 /note="C-prM/M-E-NS1-NS2a-NS2b-NS3-NS4A-NS4B-NS5" /codon_start=1 /product="polyprotein" /protein_id="AOG18296.1" /db_xref="GI:1059853345" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRAPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAEDGCWYGMEIRPRKEPESNLVRSMVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGIMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIL EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRTPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST QVRYLGEEGSTPGVL" ORIGIN 1 ttgatctgyg tgaatcagac tgcgacagtt cgagtttgaa gcgaaagcta gcaacagtat 61 caacaggttt tattttggat ttggaaacga gagtttctgg tcatgaaaaa cccaaaaaag 121 aaatccggag gattccggat tgtcaatatg ctaaaacgcg gagtagcccg tgtgagcccc 181 tttgggggct tgaagaggct gccagccgga cttctgctgg gtcatgggcc catcaggatg 241 gtcttggcga ttctagcctt tttgagattc acggcaatca agccatcact gggtctcatc 301 aatagatggg gttcagtggg gaaaaaagag gctatggaaa taataaagaa gttcaagaaa 361 gatctggctg ccatgctgag aataatcaat gctaggaagg agaagaagag acgaggcgca 421 gatactagtg tcggaattgt tggcctcctg ctgaccacag ctatggcagc ggaggtcact 481 agacgtggga gtgcatacta tatgtacttg gacagaaacg atgctgggga ggccatatct 541 tttccaacca cattggggat gaataagtgt tatatacaga tcatggatct tggacacatg 601 tgtgatgcca ccatgagcta tgaatgccct atgctggatg agggggtgga accagatgac 661 gtcgattgtt ggtgcaacac gacgtcaact tgggttgtgt acggaacctg ccatcacaaa 721 aaaggtgaag cacggagatc tagaagagct gtgacgctcc cctcccattc cactaggaag 781 ctgcaaacgc ggtcgcaaac ctggttggaa tcaagagaat acacaaagca cttgattaga 841 gtcgaaaatt ggatattcag gaaccctggc ttcgcgttag cagcagctgc catcgcttgg 901 cttttgggaa gctcaacgag ccaaaaagtc atatacttgg tcatgatact gctgattgcc 961 ccggcataca gcatcaggtg cataggagtc agcaataggg actttgtgga aggtatgtca 1021 ggtgggactt gggttgatgt tgtcttggaa catggaggtt gtgtcaccgt aatggcacag 1081 gacaaaccga ctgtcgacat agagctggtc acaacaacag tcagcaacat ggcggaggta 1141 agatcctact gctatgaggc atcaatatca gacatggctt cggacagccg ctgcccaaca 1201 caaggtgaag cctaccttga caagcaatca gacactcaat atgtctgtaa aagaacgtta 1261 gtggacagag gctggggaaa tggatgtgga ctttttggca aagggagcct ggtgacatgc 1321 gctaagtttg cttgctccaa gaaaatgacc gggaagagca tccagccaga gaatctggag 1381 taccggataa tgctgtcagt tcatggctcc cagcacagtg ggatgatcgt taatgacaca 1441 ggacatgaaa ctgatgagaa tagagcgaag gttgagataa cgcccaattc accaagagcc 1501 gaagccaccc tggggggttt tggaagccta ggacttgatt gtgaaccgag gacaggcctt 1561 gacttttcag atttgtatta cttgactatg aataacaagc actggttggt tcacaaggag 1621 tggttccacg acattccatt accttggcac gctggggcag acaccggaac tccacactgg 1681 aacaacaaag aagcactggt agagttcaag gacgcacatg ccaaaaggca aactgtcgtg 1741 gttctaggga gtcaagaagg agcagttcac acggcccttg ctggagctct ggaggctgag 1801 atggatggtg caaagggaag gctgtcctct ggccacttga aatgtcgcct gaaaatggat 1861 aaacttagat tgaagggcgt gtcatactcc ttgtgtaccg cagcgttcac attcaccaag 1921 atcccggctg aaacactgca cgggacagtc acagtggagg tacagtacgc agggacagat 1981 ggaccttgca aggttccagc tcagatggcg gtggacatgc aaactctgac cccagttggg 2041 aggttgataa ccgctaaccc cgtaatcact gaaagcactg agaactctaa gatgatgctg 2101 gaacttgatc caccatttgg ggactcttac attgtcatag gagtcgggga gaagaagatc 2161 acccaccact ggcacaggag tggcagcacc attggaaaag catttgaagc cactgtgaga 2221 ggtgccaaga gaatggcagt cttgggagac acagcctggg actttggatc agttggaggc 2281 gctctcaact cattgggcaa gggcatccat caaatttttg gagcagcttt caaatcattg 2341 tttggaggaa tgtcctggtt ctcacaaatt ctcattggaa cgttgctgat gtggttgggt 2401 ctgaacacaa agaatggatc tatttccctt atgtgcttgg ccttaggggg agtgttgatc 2461 ttcttatcca cagccgtctc tgctgatgtg gggtgctcgg tggacttctc aaagaaggag 2521 acgagatgcg gtacaggggt gttcgtctat aacgacgttg aagcctggag ggacaggtat 2581 aagtaccatc ctgactcccc ccgtagattg gcagcagcag tcaagcaagc ctgggaagat 2641 ggtatctgcg ggatctcctc tgtttcaaga atggaaaaca tcatgtggag atcagtagaa 2701 ggggagctca acgcaatcct ggaagagaat ggagttcaac tgacggtcgt tgtgggatct 2761 gtaaaaaacc ccatgtggag agctccacag agattgcccg tgcctgtgaa cgagctgccc 2821 cacggctgga aggcttgggg gaaatcgtac ttcgttagag cagcaaagac aaataacagc 2881 tttgtcgtgg atggtgacac actgaaggaa tgcccactca aacatagagc atggaacagc 2941 tttcttgtgg aggatcatgg gttcggggta ttccacacta gtgtctggct caaggttaga 3001 gaagattatt cattagagtg tgatccagcc gttattggaa cagctgtcaa gggaaaggag 3061 gctgtacaca gtgatctagg ctactggatt gagagtgaga agaatgacac atggaggctg 3121 aagagggccc atctgatcga gatgaaaaca tgtgaatggc caaagtccca cacattgtgg 3181 acagatggaa tagaagagag tgatctgatc atacccaagt ctttagctgg gccactcagc 3241 catcacaata ccagagaggg ctacaggacc caaatgaaag ggccatggca cagtgaagag 3301 cttgaaattc ggtttgagga atgcccaggc actaaggtcc acgtggagga aacatgtgga 3361 acaagaggac catctctgag atcaaccact gcaagcggaa gggtgatcga ggaatggtgc 3421 tgcagggagt gcacaatgcc cccactgtcg ttccgggctg aagatggctg ttggtatgga 3481 atggagataa ggcccaggaa agaaccagaa agcaacttag taaggtcaat ggtgactgca 3541 ggatcaactg atcacatgga tcacttctcc cttggagtgc ttgtgattct gctcatggtg 3601 caggaagggc taaagaagag aatgaccaca aagatcatca taagcacatc aatggcagtg 3661 ctggtagcta tgatcctggg aggattttca atgagtgacc tggctaagct tgcaattttg 3721 atgggtgcca ccttcgcgga aatgaacact ggaggagatg tagctcatct ggcgctgata 3781 gcggcattca aagtcagacc agcgttgctg gtatctttca tcttcagagc taattggaca 3841 ccccgtgaaa gcatgctact ggccttggcc tcgtgtcttt tgcaaactgc gatctccgcc 3901 ttggaaggcg acctgatggt tctcatcaat ggttttgctt tggcctggtt ggcaatacga 3961 gcgatggttg ttccacgcac tgataacatc accttggcaa tcctggctgc tctgacacca 4021 ctggcccggg gcacactgct tgtggcgtgg agagcaggcc ttgctacttg cggggggttt 4081 atgctcctct ctctgaaggg aaaaggcagt gtgaagaaga acttaccatt tgtcatggcc 4141 ctgggactaa ccgctgtgag gctggtcgac cccatcaacg tggtgggact gctgttgctc 4201 acaaggagtg ggaagcggag ctggccccct agcgaagtac tcacagctgt tggcctgata 4261 tgcgcattgg ctggagggtt cgccaaggca gatatagaga tggctgggcc catggccgcg 4321 gtcggtctgc taattgtcag ttacgtggtc tcaggaaaga gtgtggacat gtacattgaa 4381 agagcaggtg acatcacatg ggaaaaagat gcggaagtca ctggaaacag tccccggctc 4441 gatgtggcgc tagatgagag tggtgatttc tccctggtgg aggatgacgg tccccccatg 4501 agagagatca tactcaaggt ggtcctgatg accatctgtg gcatgaaccc aatagccata 4561 ccctttgcag ctggagcgtg gtacgtatac gtgaagactg ggaaaaggag tggtgctcta 4621 tgggatgtgc ctgctcccaa ggaagtaaaa aagggggaga ccacagatgg agtgtacaga 4681 gtaatgactc gtagactgct aggttcaaca caagttggag tgggaattat gcaagagggg 4741 gtctttcaca ctatgtggca cgtcacaaaa ggatccgcac tgagaagcgg tgaagggaga 4801 cttgatccat actggggaga tgtcaagcag gatctggtgt catactgtgg tccatggaag 4861 ctagatgccg cctgggacgg gcacagcgag gtgcagctct tggccgtgcc ccccggagag 4921 agagcgagga acatccagac tctgcccgga atatttaaga caaaggatgg ggacattgga 4981 gcggttgcgc tggattaccc agcaggaact tcaggatctc caatcctaga caagtgtggg 5041 agagtgatag gactttatgg caatggggtc gtgatcaaaa acgggagtta tgttagtgcc 5101 atcacccaag ggaggaggga ggaagagact cctgttgagt gcttcgagcc ttcgatgctg 5161 aagaagaagc agctaactgt cttagactta catcctggag ctgggaaaac caggagagtt 5221 cttcctgaaa tagtccgtga agccataaaa acaagactcc gtactgtgat cttagctcca 5281 accagggttg tcgctgctga aatggaggag gcccttagag ggcttccagt gcgttatatg 5341 acaacagcag tcaatgtcac ccactctgga acagaaatcg tcgacttaat gtgccatgcc 5401 accttcactt cacgtctact acagccaatc agagtcccca actataatct gtatattatg 5461 gatgaggccc acttcacaga tccctcaagt atagcagcaa gaggatacat ttcaacaagg 5521 gttgagatgg gcgaggcggc tgccatcttc atgaccgcca cgccaccagg aacccgtgac 5581 gcatttccgg actccaactc accaattatg gacaccgaag tggaagtccc agagagagcc 5641 tggagctcag gctttgattg ggtgacggat cattctggga aaacagtttg gtttgttcca 5701 agcgtgagga acggcaatga gatcgcagct tgtctgacaa aggctggaaa acgggtcata 5761 cagctcagca gaaagacttt tgagacagag ttccagaaaa caaaacatca agagtgggac 5821 tttgtcgtga caactgacat ttcagagatg ggcgccaact ttaaagctga ccgtgtcata 5881 gattccagga gatgcctaaa gccggtcata cttgatggcg agagagtcat tctggctgga 5941 cccatgcctg tcacacatgc cagcgctgcc cagaggaggg ggcgcatagg caggaatccc 6001 aacaaacctg gagatgagta tctgtatgga ggtgggtgcg cagagactga cgaagaccat 6061 gcacactggc ttgaagcaag aatgctcctt gacaatattt acctccaaga tggcctcata 6121 gcctcgctct atcgacctga ggccgacaaa gtagcagcca ttgagggaga gttcaagctt 6181 aggacggagc aaaggaagac ctttgtggaa ctcatgaaaa gaggagatct tcctgtttgg 6241 ctggcctatc aggttgcatc tgccggaata acctacacag atagaagatg gtgctttgat 6301 ggcacgacca acaacaccat actggaagac agtgtgccgg cagaggtgtg gaccagacac 6361 ggagagaaaa gagtgctcaa accgaggtgg atggacgcca gagtttgttc agatcatgcg 6421 gccctgaagt cattcaagga gtttgccgct ggaaaaagag gagcggcttt tggggtgatg 6481 gaagccctgg gaacactgcc aggacacatg acagagagat tccaggaagc cattgacaac 6541 ctcgctgtgc tcatgcgggc agagactgga agcaggcctt acaaagccgc ggcggcccaa 6601 ttgccggaga ccctagagac cattatgctt ttggggttgc tgggaacagt ctcgctggga 6661 atctttttcg tcttgatgag gaacaagggc atagggaaga tgggctttgg aatggtgacc 6721 cttggggcca gtgcatggct catgtggctc tcggaaattg agccagccag aattgcatgt 6781 gtcctcattg ttgtgttcct attgctggtg gtgctcatac ctgagccaga aaagcaaaga 6841 tctccccagg acaaccaaat ggcaatcatc atcatggtag cagtaggtct tctgggcttg 6901 attaccgcca atgaactcgg atggttggag agaacaaaga gtgacctaag ccatctaatg 6961 ggaaggagag aggagggggc aaccatagga ttctcaatgg acattgacct gcggccagcc 7021 tcagcttggg ccatctatgc tgccttgaca actttcatta ccccagccgt ccaacatgca 7081 gtgaccactt catacaacaa ctactcctta atggcgatgg ccacgcaagc tggagtgttg 7141 tttggtatgg gcaaagggat gccattctac gcatgggact ttggagtccc gctactaatg 7201 ataggttgct actcacaatt aacacccctg accctaatag tggccatcat tttgctcgtg 7261 gcgcactaca tgtacttgat cccagggctg caggcagcag ccgcgcgtgc tgcccagaag 7321 agaacggcag ctggcatcat gaagaaccct gttgtggatg gaatagtggt gactgacatt 7381 gacacaatga caattgaccc ccaagtggag aaaaagatgg gacaggtgct actcatagca 7441 gtagccgtct ccagcgccat actgtcgcgg accgcctggg ggtgggggga ggctggggcc 7501 ctgatcacag ccgcaacttc cactttgtgg gaaggctctc cgaacaagta ctggaactcc 7561 tctacagcca cttcactgtg taacattttt aggggaagtt acttggctgg agcttctcta 7621 atctacacag taacaagaaa cgctggcttg gtcaagagac gtgggggtgg aacaggagag 7681 accctgggag agaaatggaa ggcccgcttg aaccagatgt cggccctgga gttctactcc 7741 tacaaaaagt caggcatcac cgaggtgtgc agagaagagg cccgccgcgc cctcaaggac 7801 ggtgtggcaa cgggaggcca tgctgtgtcc cgaggaagtg caaagctgag atggttggtg 7861 gagcggggat acctgcagcc ctatggaaag gtcattgatc ttggatgtgg cagagggggc 7921 tggagttact acgccgccac catccgcaaa gttcaagaag tgaaaggata cacaaaagga 7981 ggccctggtc atgaggaacc cgtgttggtg caaagctatg ggtggaacat agtccgtctt 8041 aagagtgggg tggacgtctt tcatatggcg gctgagccgt gtgacacgtt gctgtgtgac 8101 ataggtgagt catcatctag tcctgaagtg gaagaagcac ggacgctcag agtcctctcc 8161 atggtggggg attggcttga aaaaagacca ggagcctttt gtataaaagt gttgtgccca 8221 tacaccagca ctatgatgga aaccctggag cgactgcagc gtaggtatgg gggaggactg 8281 gtcagagtgc cactatcccg caactctaca catgagatgt actgggtctc tggagcgaaa 8341 agcaacacca taaaaagtgt gtccaccacg agccagctcc tcttggggcg catggacggg 8401 cctaggaggc cagtgaaata tgaggaggat gtgaatctcg gctctggcac gcgggctgtg 8461 gtaagctgcg ctgaagctcc caacatgaag atcattggta accgcattga aaggatccgc 8521 agtgagcacg cggaaacgtg gttctttgac gagaaccacc catataggac atgggcttac 8581 catggaagct atgaggcccc cacacaaggg tcagcgtcct ctctaataaa cggggttgtc 8641 aggctcctgt caaaaccctg ggatgtggtg actggagtca caggaatagc catgaccgac 8701 accacaccgt atggtcagca aagagttttc aaggaaaaag tggacactag ggtgccagac 8761 ccccaagaag gcactcgtca ggttatgagc atggtctctt cctggttgtg gaaagagcta 8821 ggcaaacaca aacggccacg agtctgtacc aaagaagagt tcatcaacaa ggttcgtagc 8881 aatgcagcat taggggcaat atttgaagag gaaaaagagt ggaagactgc agtggaagct 8941 gtgaacgatc caaggttctg ggctctagtg gacaaggaaa gagagcacca cctgagagga 9001 gagtgccaga gttgtgtgta caacatgatg ggaaaaagag aaaagaaaca aggggaattt 9061 ggaaaggcca agggcagccg cgccatctgg tatatgtggc taggggctag atttctagag 9121 ttcgaagccc ttggattctt gaacgaggat cactggatgg ggagagagaa ctcaggaggt 9181 ggtgttgaag ggctgggatt acaaagactc ggatatgtcc tagaagagat gagtcgcaca 9241 ccaggaggaa ggatgtatgc agatgacact gctggctggg acacccgcat cagcaggttt 9301 gacctggaga atgaagctct aatcaccaac caaatggaga aagggcacag ggccttggca 9361 ttggccataa tcaagtacac ataccaaaac aaagtggtaa aggtccttag accagctgaa 9421 aaagggaaaa cagttatgga cattatttcg agacaagacc aaagggggag cggacaagtt 9481 gtcacttacg ctcttaacac atttaccaac ctagtggtgc aactcattcg gaatatggag 9541 gctgaggaag ttctagagat gcaagacttg tggctgctgc ggaggtcaga gaaagtgacc 9601 aactggttgc agagcaacgg atgggatagg ctcaaacgaa tggcagtcag tggagatgat 9661 tgcgttgtga agccaattga tgataggttt gcacatgccc tcaggttctt gaatgatatg 9721 ggaaaagtta ggaaggacac acaagagtgg aaaccctcaa ctggatggga caactgggaa 9781 gaagttccgt tttgctccca ccacttcaac aagctccatc tcaaggacgg gaggtccatt 9841 gtggttccct gccgccacca agatgaactg attggccggg cccgcgtctc tccaggggcg 9901 ggatggagca tccgggagac tgcttgccta gcaaaatcat atgcgcaaat gtggcagctc 9961 ctttatttcc acagaaggga cctccgactg atggccaatg ccatttgttc atctgtgcca 10021 gttgactggg ttccaactgg gagaactacc tggtcaatcc atggaaaggg agaatggatg 10081 accactgaag acatgcttgt ggtgtggaac agagtgtgga ttgaggagaa cgaccacatg 10141 gaagacaaga ccccagttac gaaatggaca gacattccct atttgggaaa aagggaagac 10201 ttgtggtgtg gatctctcat agggcacaga ccgcgcacca cctgggctga gaacattaaa 10261 aacacagtca acatggtgcg caggatcata ggtgatgaag aaaagtacat ggactaccta 10321 tccacccaag ttcgctactt gggtgaagaa gggtctacac ctggagtgct gtaagcacca 10381 atcttaatgt tgtcaggcct gctagtcagc cacagcttgg ggaaagctgt gcagcctgtg 10441 acccccccag gagaagctgg gaaaccaagc ctatagtcag gccgagaacg ccatggcacg 10501 gaagaagcca tgctgcctgt gagcccctca gaggacactg agtcaaaaaa ccccacgcgc 10561 ttggaggcgc aggatgggaa aagaaggtgg cgaccttccc cacccttcaa tctggggcct 10621 gaactggaga tcagctgtgg atctccagaa gagggactag tggttagagg agaccccccg 10681 gaaaacgcaa aacagcatat tgacgctggg aaagaccaga gactccatga gtttccacca 10741 cgctggccg
niman Posted August 29, 2016 Author Report Posted August 29, 2016 Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 18969 18969 100% 0.0 100% KX766029.1 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 18859 18859 100% 0.0 99% KX247632.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 18848 18848 100% 0.0 99% KX446951.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 18842 18842 100% 0.0 99% KX446950.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 18825 18825 100% 0.0 99% KX262887.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 18814 18814 100% 0.0 99% KX694534.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 18803 18803 100% 0.0 99% KU501217.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 18798 18798 100% 0.0 99% KU501216.1 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 18776 18776 100% 0.0 99% KU870645.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 18770 18770 100% 0.0 99% KX447510.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 18759 18759 100% 0.0 99% KX447512.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 18759 18759 100% 0.0 99% KX369547.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 18759 18759 100% 0.0 99% KU509998.3 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 18753 18753 100% 0.0 99% KX447509.1 Select seq gb|KJ776791.1| Zika virus strain H/PF/2013 polyprotein gene, complete cds 18753 18753 100% 0.0 99% KJ776791.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 18748 18748 100% 0.0 99% KX447513.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 18742 18742 100% 0.0 99% KX447515.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 18742 18742 100% 0.0 99% KX447511.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 18742 18742 100% 0.0 99% KX280026.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 18742 18742 100% 0.0 99% KU991811.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 18742 18742 100% 0.0 99% KU707826.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 18742 18742 100% 0.0 99% KU365779.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 18742 18742 100% 0.0 99% KU321639.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 18737 18737 100% 0.0 99% KX447514.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 18737 18737 100% 0.0 99% KX051563.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 18737 18737 100% 0.0 99% KU926309.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 18731 18731 100% 0.0 99% KX447516.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 18731 18731 100% 0.0 99% KU729218.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 18726 18726 100% 0.0 99% KU758877.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 18726 18726 100% 0.0 99% KX197192.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 18726 18726 100% 0.0 99% KU365780.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 18720 18720 100% 0.0 99% KU365777.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 18715 18715 100% 0.0 99% KX198135.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 18709 18709 100% 0.0 99% KU940228.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 18709 18709 100% 0.0 99% KU647676.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 18703 18703 100% 0.0 99% KX247646.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 18703 18703 100% 0.0 99% KX156776.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 18703 18703 100% 0.0 99% KU501215.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 18703 18703 100% 0.0 99% KU365778.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 18703 18703 100% 0.0 99% KU312312.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 18700 18700 99% 0.0 99% KU497555.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 18698 18698 100% 0.0 99% KX601168.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 18698 18698 100% 0.0 99% KX087101.2 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 18698 18698 100% 0.0 99% KX156774.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 18698 18698 100% 0.0 99% KU729217.2 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 18698 18698 100% 0.0 99% KU527068.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 18692 18692 100% 0.0 99% KU820897.5 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 18692 18692 100% 0.0 99% KX447517.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 18692 18692 100% 0.0 99% KX377337.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 18692 18692 100% 0.0 99% KU937936.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 18692 18692 100% 0.0 99% KX156775.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 18692 18692 100% 0.0 99% KX087102.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 18687 18687 100% 0.0 99% KX520666.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 18687 18687 100% 0.0 99% KU922960.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 18681 18681 100% 0.0 99% KX548902.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 18681 18681 100% 0.0 99% KU926310.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 18681 18681 100% 0.0 99% KU922923.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 18681 18681 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 18679 18679 100% 0.0 99% KU853012.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 18670 18670 100% 0.0 99% KX702400.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 18670 18670 100% 0.0 99% KU820898.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 18665 18665 100% 0.0 99% KX056898.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 18665 18665 100% 0.0 99% KU955590.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 18661 18661 100% 0.0 99% KX766028.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 18659 18659 100% 0.0 99% KU740184.2 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 18659 18659 100% 0.0 99% KU761564.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 18654 18654 100% 0.0 99% KX673530.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 18643 18643 100% 0.0 99% KX117076.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 18631 18631 100% 0.0 99% KX185891.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 18631 18631 100% 0.0 99% KU963796.1 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 18626 18626 100% 0.0 99% KX253996.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 18626 18626 100% 0.0 99% KU955589.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 18626 18626 100% 0.0 99% KU820899.2 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 18622 18622 100% 0.0 99% KX266255.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 18620 18620 100% 0.0 99% KU866423.2 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 18611 18611 99% 0.0 99% KU940224.1 Select seq gb|KU744693.1| Zika virus isolate VE_Ganxian, complete genome 18465 18465 100% 0.0 99% KU744693.1 Select seq gb|KU681081.3| Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome 18332 18332 100% 0.0 99% KU681081.3 Select seq gb|KX694532.1| Zika virus strain ZIKV/Homo sapiens/THA/PLCal_ZV/2013, complete genome 18183 18183 100% 0.0 99% KX694532.1 Select seq gb|JN860885.1| Zika virus isolate FSS13025 polyprotein gene, partial cds 17980 17980 99% 0.0 98% JN860885.1 Select seq gb|KU955593.1| Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome 17978 17978 100% 0.0 98% KU955593.1 Select seq gb|KF993678.1| Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds 17946 17946 98% 0.0 99% KF993678.1 Select seq gb|EU545988.1| Zika virus polyprotein gene, complete cds 17771 17771 100% 0.0 98% EU545988.1 Select seq gb|KU681082.3| Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome 17584 17584 100% 0.0 98% KU681082.3 Select seq gb|KX447518.1| Zika virus isolate 1_0117_PF polyprotein gene, partial cds 16558 16558 88% 0.0 99% KX447518.1 Select seq gb|KX601167.1| Zika virus strain ZIKV/Aedes sp./MYS/P6-740/1966, complete genome 16366 16366 99% 0.0 95% KX601167.1 Select seq gb|HQ234499.1| Zika virus isolate P6-740 polyprotein gene, partial cds 16360 16360 99% 0.0 95% HQ234499.1 Select seq gb|KX694533.1| Zika virus strain ZIKV/Aedes aegypti/MYS/P6-740/1966, complete genome 16355 16355 99% 0.0 95% KX694533.1 Select seq gb|KX377336.1| Zika virus strain P6-740, complete genome 16349 16349 99% 0.0 95% KX377336.1 Select seq gb|KU720415.1| Zika virus strain MR 766 polyprotein gene, complete cds 12554 12554 100% 0.0 89% KU720415.1 Select seq gb|HQ234498.1| Zika virus isolate MR_766 polyprotein gene, partial cds 12549 12549 99% 0.0 89% HQ234498.1 Select seq gb|KX377335.1| Zika virus strain MR-766, complete genome 12538 12538 100% 0.0 89% KX377335.1 Select seq gb|KF383115.1| Zika virus strain ArB1362 polyprotein gene, complete cds 12534 12534 100% 0.0 89% KF383115.1 Select seq dbj|LC002520.1| Zika virus genomic RNA, complete genome, strain: MR766-NIID 12526 12526 100% 0.0 89% LC002520.1 Select seq gb|KF383119.1| Zika virus strain ArD158084 polyprotein gene, complete cds 12526 12526 100% 0.0 89% KF383119.1 Select seq gb|KU955595.1| Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome 12499 12499 100% 0.0 89% KU955595.1 Select seq gb|KF268948.1| Zika virus isolate ARB13565 polyprotein gene, complete cds 12495 12495 100% 0.0 89% KF268948.1 Select seq gb|KX601169.1| Zika virus strain ZIKV/Macaca mulatta/UGA/MR-766/1947, complete genome 12493 12493 100% 0.0 89% KX601169.1 Select seq gb|KU963573.1| Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds 12493 12493 100% 0.0 89% KU963573.1 Select seq gb|KU955594.1| Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome 12493 12493 100% 0.0 89% KU955594.1 Select seq gb|KU955592.1| Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome 12488 12488 100% 0.0 89% KU955592.1 Select seq gb|KF268950.1| Zika virus isolate ARB7701 polyprotein gene, complete cds 12488 12488 100% 0.0 89% KF268950.1 Select seq gb|KF268949.1| Zika virus isolate ARB15076 polyprotein gene, complete cds 12482 12482 100% 0.0 89% KF268949.1 Select seq gb|DQ859059.1| Zika virus strain MR 766 polyprotein gene, complete cds 12477 12477 100% 0.0 89% DQ859059.1 Select seq gb|KX198134.1| Zika virus strain ZIKV/Aedes africanus/SEN/DAK-AR-41524_A1C1-V2/1984, complete genome 12471 12471 100% 0.0 89% KX198134.1 Select seq gb|KU955591.1| Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome 12466 12466 100% 0.0 89% KU955591.1 Select seq gb|KF383116.1| Zika virus strain ArD7117 polyprotein gene, complete cds 12460 12460 100% 0.0 89% KF383116.1 Select seq gb|AY632535.2| Zika virus strain MR 766, complete genome 12454 12454 100% 0.0 89% AY632535.2 Select seq gb|HQ234501.1| Zika virus isolate ArD_41519 polyprotein gene, partial cds 12429 12429 99% 0.0 89% HQ234501.1 Select seq gb|KF383117.1| Zika virus strain ArD128000 polyprotein gene, complete cds 12388 12388 100% 0.0 88% KF383117.1 Select seq gb|KX601166.1| Zika virus strain ZIKV/Aedes africanus/SEN/DakAr41524/1984, complete genome 12382 12382 100% 0.0 88% KX601166.1 Select seq gb|KU963574.1| Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds 12344 12344 100% 0.0 88% KU963574.1 Select seq gb|HQ234500.1| Zika virus isolate IbH_30656 polyprotein gene, partial cds 12344 12344 99% 0.0 88% HQ234500.1 Select seq gb|KF383118.1| Zika virus strain ArD157995 polyprotein gene, complete cds 12165 12165 100% 0.0 88% KF383118.1 Select seq gb|KF383121.1| Zika virus strain ArD158095 polyprotein gene, partial cds 12139 12139 97% 0.0 89% KF383121.1 Select seq gb|KX447520.1| Zika virus isolate 1_0016_PF polyprotein gene, partial cds 11738 16149 86% 0.0 99% KX447520.1 Select seq gb|KX576684.1| Zika virus vector pZIKV-ICD, complete sequence 11112 18741 100% 0.0 99% KX576684.1 Select seq gb|KX447519.1| Zika virus isolate 1_0199_PF polyprotein gene, partial cds 10207 16426 87% 0.0 99% KX447519.1 Select seq gb|KX447521.1| Zika virus isolate 1_0080_PF polyprotein gene, partial cds 10052 15288 81% 0.0 99% KX447521.1 Select seq gb|KF383120.1| Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence 9681 9681 97% 0.0 84% KF383120.1 Select seq gb|KX212103.1| Zika virus isolate BRZIKV_AB_ES polyprotein gene, partial cds 5099 5099 27% 0.0 99% KX212103.1 Select seq gb|KU758871.1| Zika virus isolate 17170 polyprotein gene, partial cds 5092 5092 27% 0.0 99% KU758871.1 Select seq gb|KU758875.1| Zika virus isolate 15042 polyprotein gene, partial cds 5090 5090 27% 0.0 99% KU758875.1 Select seq gb|KU758870.1| Zika virus isolate 17160 polyprotein gene, partial cds 5084 5084 27% 0.0 99% KU758870.1 Select seq gb|KU312314.1| Zika virus isolate Z1106031 polyprotein gene, partial cds 5083 5083 27% 0.0 99% KU312314.1 Select seq gb|KU758873.1| Zika virus isolate 18246 polyprotein gene, partial cds 5081 5081 27% 0.0 99% KU758873.1 Select seq gb|KU758872.1| Zika virus isolate 01170 polyprotein gene, partial cds 5066 5066 27% 0.0 99% KU758872.1 Select seq gb|KU758869.1| Zika virus isolate 05211 polyprotein gene, partial cds 5055 5055 26% 0.0 99% KU758869.1 Select seq gb|KU758876.1| Zika virus isolate 21068 polyprotein gene, partial cds 5053 5053 27% 0.0 99% KU758876.1 Select seq gb|KU312313.1| Zika virus isolate Z1106032 polyprotein gene, partial cds 5049 5049 27% 0.0 99% KU312313.1 Select seq gb|KU758868.1| Zika virus isolate 27229 polyprotein gene, partial cds 5024 5024 26% 0.0 99% KU758868.1 Select seq gb|KU758874.1| Zika virus isolate 20114 polyprotein gene, partial cds 5018 5018 26% 0.0 99% KU758874.1 Select seq gb|KU646828.1| Zika virus isolate Si322 polyprotein gene, partial cds 4732 4732 25% 0.0 99% KU646828.1 Select seq gb|KU646827.1| Zika virus isolate Si323 polyprotein gene, partial cds 4721 4721 25% 0.0 99% KU646827.1 Select seq gb|KU940227.1| Zika virus isolate Bahia08, partial genome 4527 14522 78% 0.0 98% KU940227.1 Select seq gb|KU312315.1| Zika virus isolate Z1106027 polyprotein gene, partial cds 3500 3500 18% 0.0 99% KU312315.1 Select seq gb|KU740199.1| Zika virus isolate VE_Ganxian2016 polyprotein gene, partial cds 3271 3271 17% 0.0 99% KU740199.1 Select seq gb|KX101066.1| Zika virus isolate Bahia01, partial genome 3173 13322 72% 0.0 99% KX101066.1 Select seq gb|KX101060.1| Zika virus isolate Bahia02, partial genome 3086 10977 59% 0.0 98% KX101060.1 Select seq gb|KJ634273.1| Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds 2748 2748 14% 0.0 99% KJ634273.1 Select seq dbj|LC171327.1| Zika virus gene for polyprotein, partial cds, strain: ZIKV/Hu/Chiba/S36/2016 2743 2743 14% 0.0 99% LC171327.1 Select seq gb|KU686218.1| Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds 2087 2087 11% 0.0 99% KU686218.1 Select seq gb|KU179098.1| Zika virus isolate JMB-185 nonstructural protein 5 gene, partial cds 2054 2054 11% 0.0 99% KU179098.1 Select seq gb|KU886298.1| Zika virus isolate MN NS5 gene, partial cds 1905 1905 10% 0.0 99% KU886298.1 Select seq gb|KX101061.1| Zika virus isolate Bahia03, partial genome 1879 13803 74% 0.0 99% KX101061.1 Select seq gb|KX059014.1| Zika virus isolate Haiti/1230/2014 NS5 gene, partial cds 1875 1875 9% 0.0 99% KX059014.1 Select seq gb|KX059013.1| Zika virus isolate Haiti/1227/2014 NS5 gene, partial cds 1875 1875 9% 0.0 99% KX059013.1 Select seq gb|KM078936.1| Zika virus strain CHI1410214 NS5 protein gene, partial cds 1786 1786 9% 0.0 99% KM078936.1 Select seq gb|KM078961.1| Zika virus strain CHI2612114 NS5 protein gene, partial cds 1783 1783 9% 0.0 99% KM078961.1 Select seq gb|KM078930.1| Zika virus strain CHI2283714 NS5 protein gene, partial cds 1781 1781 9% 0.0 99% KM078930.1 Select seq gb|KM078971.1| Zika virus strain CHI2613014 NS5 protein gene, partial cds 1777 1777 9% 0.0 99% KM078971.1 Select seq gb|KM078970.1| Zika virus strain CHI2490414 NS5 protein gene, partial cds 1777 1777 9% 0.0 99% KM078970.1 Select seq gb|KM078933.1| Zika virus strain CHI1058514 NS5 protein gene, partial cds 1777 1777 9% 0.0 99% KM078933.1 Select seq gb|KM078929.1| Zika virus strain CHI1805214 NS5 protein gene, partial cds 1775 1775 9% 0.0 99% KM078929.1 Select seq gb|KX173841.1| Zika virus isolate 16Z11 envelope protein gene, partial cds 1685 1685 9% 0.0 99% KX173841.1 Select seq gb|KX173840.1| Zika virus isolate 16Z10 envelope protein gene, partial cds 1685 1685 9% 0.0 99% KX173840.1 Select seq gb|KJ873160.1| Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds 1633 1633 8% 0.0 99% KJ873160.1 Select seq gb|KX101064.1| Zika virus isolate Bahia11, partial genome 1616 9202 49% 0.0 99% KX101064.1 Select seq gb|KX173843.1| Zika virus isolate 16Z62 envelope protein gene, partial cds 1552 1552 8% 0.0 99% KX173843.1 Select seq gb|KX173844.1| Zika virus isolate 16Z62 envelope protein gene, partial cds 1541 1541 8% 0.0 99% KX173844.1 Select seq gb|KJ873161.1| Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds 1447 1447 7% 0.0 99% KJ873161.1 Select seq gb|KM851039.1| Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds 1408 1408 7% 0.0 99% KM851039.1 Select seq gb|KU985087.1| Zika virus isolate MEX/InDRE/Zika-2/2015 nonstructural protein 5 gene, partial cds 1378 1378 7% 0.0 99% KU985087.1 Select seq gb|KU556802.1| Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds 1373 1373 7% 0.0 99% KU556802.1 Select seq gb|KM851038.1| Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds 1363 1363 7% 0.0 98% KM851038.1 Select seq gb|KU724096.1| Zika virus isolate 259249_2015_Panama NS5B gene, partial cds 1330 1330 7% 0.0 99% KU724096.1 Select seq gb|KT200609.1| Zika virus isolate BR/949/15 NS5 gene, partial cds 1269 1269 6% 0.0 99% KT200609.1 Select seq gb|KU232300.1| Zika virus isolate 067ZV_PEBR15 NS5 protein gene, partial cds 1262 1262 6% 0.0 99% KU232300.1 Select seq gb|KU232290.1| Zika virus isolate 036ZV_PEBR15 NS5 protein gene, partial cds 1253 1253 6% 0.0 99% KU232290.1 Select seq gb|KU232297.1| Zika virus isolate 049ZV_PEBR15 NS5 protein gene, partial cds 1249 1249 6% 0.0 99% KU232297.1 Select seq gb|KU232294.1| Zika virus isolate 061ZV_PEBR15 NS5 protein gene, partial cds 1243 1243 6% 0.0 99% KU232294.1 Select seq gb|KU232292.1| Zika virus isolate 054ZV_PEBR15 NS5 protein gene, partial cds 1240 1240 6% 0.0 99% KU232292.1 Select seq gb|KU232298.1| Zika virus isolate 050ZV_PEBR15 NS5 protein gene, partial cds 1236 1236 6% 0.0 99% KU232298.1 Select seq gb|KU232296.1| Zika virus isolate 045ZV_PEBR15 NS5 protein gene, partial cds 1232 1232 6% 0.0 99% KU232296.1 Select seq gb|KU232293.1| Zika virus isolate 057ZV_PEBR15 NS5 protein gene, partial cds 1232 1232 6% 0.0 99% KU232293.1 Select seq gb|AF013415.1| Zika virus strain MR-766 NS5 protein (NS5) gene, partial cds 1230 1230 10% 0.0 88% AF013415.1 Select seq gb|KU232295.1| Zika virus isolate 068ZV_PEBR15 NS5 protein gene, partial cds 1229 1229 6% 0.0 99% KU232295.1 Select seq gb|KU232288.1| Zika virus isolate 001ZV_PEBR15 NS5 protein gene, partial cds 1218 1218 6% 0.0 99% KU232288.1 Select seq gb|KU232289.1| Zika virus isolate 020ZV_PEBR15 NS5 protein gene, partial cds 1214 1214 6% 0.0 99% KU232289.1 Select seq gb|KX101063.1| Zika virus isolate Bahia05, partial genome 1212 7434 40% 0.0 99% KX101063.1 Select seq gb|KU232299.1| Zika virus isolate 015ZV_PEBR15 NS5 protein gene, partial cds 1210 1210 6% 0.0 99% KU232299.1 Select seq gb|KU724097.1| Zika virus isolate 259250_2015_Panama NS5B gene, partial cds 1206 1206 6% 0.0 100% KU724097.1 Select seq gb|KU232291.1| Zika virus isolate 051ZV_PEBR15 NS5 protein gene, partial cds 1205 1205 6% 0.0 99% KU232291.1 Select seq gb|KX101065.1| Zika virus isolate Bahia15, partial genome 1201 7394 39% 0.0 99% KX101065.1 Select seq gb|KU724098.1| Zika virus isolate 259060_2015_Panama NS5B gene, partial cds 1194 1194 6% 0.0 99% KU724098.1 Select seq gb|KU758878.1| Zika virus polyprotein gene, partial cds 1158 1158 6% 0.0 99% KU758878.1 Select seq gb|KU724099.1| Zika virus isolate 259032_2015_Panama NS5B gene, partial cds 1127 1127 5% 0.0 99% KU724099.1 Select seq gb|KX101062.1| Zika virus isolate Bahia04, partial genome 1077 7325 40% 0.0 97% KX101062.1 Select seq gb|KU867812.1| Zika virus isolate Jiangxi.CHN/01/2016 nonstructural protein 5 gene, partial cds 1042 1042 5% 0.0 100% KU867812.1 Select seq gb|KF270886.1| Zika virus strain CCB-870 envelope glycoprotein gene, partial cds 1014 1014 8% 0.0 89% KF270886.1 Select seq gb|KU724100.1| Zika virus isolate 259043_2015_Panama NS5B gene, partial cds 965 965 5% 0.0 99% KU724100.1 Select seq gb|KF383022.1| Zika virus strain ArD127988 envelope protein gene, partial cds 926 926 7% 0.0 89% KF383022.1 Select seq gb|KF270887.1| Zika virus strain CCB-870 NS3 protein gene, partial cds 922 922 7% 0.0 88% KF270887.1 Select seq gb|KF383026.1| Zika virus strain ArD127994 envelope protein gene, partial cds 920 920 7% 0.0 89% KF383026.1 Select seq gb|AF372422.1|AF372422 Zika virus envelope protein (E) gene, partial cds 917 917 8% 0.0 87% AF372422.1 Select seq gb|KF383032.1| Zika virus strain ArD30101 envelope protein gene, partial cds 909 909 7% 0.0 88% KF383032.1 Select seq gb|EU303241.1| Zika virus note MR766 (p4 15/9/76) nonstructural protein 5 (NS5) gene, partial cds 905 905 7% 0.0 88% EU303241.1 Select seq gb|KF383037.1| Zika virus strain ArA506 envelope protein gene, partial cds 904 904 7% 0.0 88% KF383037.1 Select seq gb|KF383034.1| Zika virus strain ArD30156 envelope protein gene, partial cds 904 904 7% 0.0 88% KF383034.1 Select seq gb|KF383029.1| Zika virus strain ArD165522 envelope protein gene, partial cds 904 904 7% 0.0 88% KF383029.1 Select seq gb|KX247638.1| Zika virus isolate Dominican_Rep-Rus-3-2016 polyprotein gene, partial cds 898 898 4% 0.0 99% KX247638.1 Select seq gb|KF383036.1| Zika virus strain ArA975 envelope protein gene, partial cds 898 898 7% 0.0 88% KF383036.1 Select seq gb|KF383033.1| Zika virus strain AnD30332 envelope protein gene, partial cds 898 898 7% 0.0 88% KF383033.1 Select seq gb|KU978616.1| Zika virus isolate Dominican_Rep-Rus-2-2016 polyprotein gene, partial cds 893 893 4% 0.0 99% KU978616.1 Select seq gb|KF383039.1| Zika virus strain HD78788 envelope protein gene, partial cds 876 876 7% 0.0 88% KF383039.1 Select seq gb|KF383028.1| Zika virus strain ArD165531 envelope protein gene, partial cds 876 876 7% 0.0 88% KF383028.1 Select seq gb|KF383031.1| Zika virus strain ArD9957 envelope protein gene, partial cds 870 870 7% 0.0 88% KF383031.1 Select seq gb|KF383038.1| Zika virus strain ArA986 envelope protein gene, partial cds 865 865 7% 0.0 87% KF383038.1 Select seq gb|KF383046.1| Zika virus strain ArA982 envelope protein gene, partial cds 854 854 7% 0.0 87% KF383046.1 Select seq gb|KF383103.1| Zika virus strain ArA986 nonstructural protein 5 gene, partial cds 846 846 6% 0.0 88% KF383103.1 Select seq gb|KF383086.1| Zika virus strain ArA975 nonstructural protein 5 gene, partial cds 846 846 6% 0.0 88% KF383086.1 Select seq dbj|AB908162.1| Zika virus gene for polyprotein, partial cds, strain: ZIKV Hu/Tahiti/01u/2014NIID 846 846 4% 0.0 99% AB908162.1 Select seq gb|KU872850.1| Zika virus isolate Dominican Rep-Rus-2016, NS2 partial cds 837 837 4% 0.0 99% KU872850.1 Select seq gb|KF383045.1| Zika virus strain ArA27106 envelope protein gene, partial cds 837 837 7% 0.0 87% KF383045.1 Select seq gb|KF383043.1| Zika virus strain ArA27443 envelope protein gene, partial cds 832 832 7% 0.0 87% KF383043.1 Select seq gb|KX253994.1| Zika virus strain ZIKV/Homo sapiens/GER/GER-BNI-P2/2016 polyprotein gene, partial cds 826 826 4% 0.0 100% KX253994.1 Select seq gb|KF383041.1| Zika virus strain ArA27290 envelope protein gene, partial cds 826 826 7% 0.0 87% KF383041.1 Select seq gb|KX101067.1| Zika virus isolate Bahia12, partial genome 821 8707 48% 0.0 99% KX101067.1 Select seq gb|KF383042.1| Zika virus strain ArA27096 envelope protein gene, partial cds 821 821 7% 0.0 86% KF383042.1 Select seq gb|KF383104.1| Zika virus strain ArA982 nonstructural protein 5 gene, partial cds 813 813 6% 0.0 87% KF383104.1 Select seq gb|KF383085.1| Zika virus strain ArD9957 nonstructural protein 5 gene, partial cds 808 808 6% 0.0 87% KF383085.1 Select seq gb|KF383035.1| Zika virus strain MR1429 envelope protein gene, partial cds 804 804 7% 0.0 86% KF383035.1 Select seq gb|KF383106.1| Zika virus strain ArA27443 nonstructural protein 5 gene, partial cds 802 802 6% 0.0 87% KF383106.1 Select seq gb|KF383114.1| Zika virus strain AnD30332 nonstructural protein 5 gene, partial cds 797 797 6% 0.0 87% KF383114.1 Select seq gb|KF383107.1| Zika virus strain ArA27407 nonstructural protein 5 gene, partial cds 797 797 6% 0.0 87% KF383107.1 Select seq gb|KF383088.1| Zika virus strain ArD30101 nonstructural protein 5 gene, partial cds 797 797 6% 0.0 87% KF383088.1 Select seq gb|KF383087.1| Zika virus strain ArD30156 nonstructural protein 5 gene, partial cds 791 791 6% 0.0 87% KF383087.1 Select seq gb|KF383089.1| Zika virus strain ArD165531 nonstructural protein 5 gene, partial cds 774 774 6% 0.0 86% KF383089.1 Select seq gb|KF383101.1| Zika virus strain ArD127710 nonstructural protein 5 gene, partial cds 769 769 6% 0.0 86% KF383101.1 Select seq gb|KF383097.1| Zika virus strain ArD127994 nonstructural protein 5 gene, partial cds 769 769 6% 0.0 86% KF383097.1 Select seq gb|KF383099.1| Zika virus strain ArD127987 nonstructural protein 5 gene, partial cds 763 763 6% 0.0 86% KF383099.1 Select seq gb|KF383098.1| Zika virus strain ArD127988 nonstructural protein 5 gene, partial cds 758 758 6% 0.0 86% KF383098.1 Select seq gb|KF383113.1| Zika virus strain ArA1465 nonstructural protein 5 gene, partial cds 719 719 6% 0.0 85% KF383113.1 Select seq gb|KF258813.1| Zika virus isolate Java non-structural protein 5 mRNA, partial cds 704 704 3% 0.0 98% KF258813.1 Select seq gb|KX253995.1| Zika virus strain ZIKV/Homo sapiens/PRI/PRI-BNI-P1/2016 polyprotein gene, partial cds 697 697 3% 0.0 100% KX253995.1 Select seq gb|KU985088.1| Zika virus isolate MEX/InDRE/Zika-2/2015 envelope protein gene, partial cds 654 654 3% 0.0 99% KU985088.1 Select seq gb|KX062045.1| Zika virus isolate Haiti/1230/2014 envelope protein gene, partial cds 645 645 3% 6e-180 100% KX062045.1 Select seq gb|KX062044.1| Zika virus isolate Haiti/1227/2014 envelope protein gene, partial cds 640 640 3% 3e-178 99% KX062044.1 Select seq gb|KF383017.1| Zika virus strain ArD149938 envelope protein gene, partial cds 604 604 7% 1e-167 81% KF383017.1 Select seq gb|KR815989.1| Zika virus isolate 15095 envelope protein gene, partial cds 599 599 3% 5e-166 99% KR815989.1 Select seq gb|KF383016.1| Zika virus strain ArD147917 envelope protein gene, partial cds 599 599 7% 5e-166 81% KF383016.1 Select seq gb|KF383015.1| Zika virus strain ArD149810 envelope protein gene, partial cds 599 599 7% 5e-166 81% KF383015.1 Select seq gb|KX173842.1| Zika virus isolate 16Z08 envelope protein gene, partial cds 592 592 3% 8e-164 99% KX173842.1 Select seq gb|KF383021.1| Zika virus strain ArD132912 envelope protein gene, partial cds 592 592 7% 8e-164 81% KF383021.1 Select seq gb|KF383020.1| Zika virus strain ArA1465 envelope protein gene, partial cds 592 592 7% 8e-164 81% KF383020.1 Select seq gb|KF383019.1| Zika virus strain ArD132915 envelope protein gene, partial cds 577 577 7% 2e-159 81% KF383019.1 Select seq gb|KF383092.1| Zika virus strain ArD147917 nonstructural protein 5 gene, partial cds 566 566 6% 5e-156 81% KF383092.1 Select seq gb|KF383093.1| Zika virus strain ArD149810 nonstructural protein 5 gene, partial cds 564 564 6% 2e-155 81% KF383093.1 Select seq gb|KR816334.1| Zika virus isolate BR/UFBA/LabViro/Ex1 envelope protein gene, partial cds 556 556 2% 3e-153 99% KR816334.1 Select seq gb|KR816333.1| Zika virus isolate BR/UFBA/LabViro/23 envelope protein gene, partial cds 555 555 2% 1e-152 99% KR816333.1
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