niman Posted September 10, 2016 Report Share Posted September 10, 2016 Public Health Virology in Australia has released a series of related partial (1512 BP of env gene) sequences from a geographical range of cases with most from Oceania or Southeast Asia. The sequences are also related to those from Japan and China travelers to Oceania (Fiji and Samoa) and may be closely related to the recent cases in Singapore. Link to comment Share on other sites More sharing options...
niman Posted September 10, 2016 Author Report Share Posted September 10, 2016 1. Zika virus isolate SIS58-2015 envelope protein gene, partial cds 1,512 bp linear RNA Accession: KX216632.1 GI: 1029979471 GenBankFASTAGraphicsPopSet Select item 10299794732. Zika virus isolate VS51-2016 envelope protein gene, partial cds 1,512 bp linear RNA Accession: KX216633.1 GI: 1029979473 GenBankFASTAGraphicsPopSet Select item 10299794753. Zika virus isolate TS14-2016 envelope protein gene, partial cds 1,512 bp linear RNA Accession: KX216634.1 GI: 1029979475 GenBankFASTAGraphicsPopSet Select item 10299794774. Zika virus isolate TS17-2016 envelope protein gene, partial cds 1,512 bp linear RNA Accession: KX216635.1 GI: 1029979477 GenBankFASTAGraphicsPopSet Select item 10299794795. Zika virus isolate SS27-2016 envelope protein gene, partial cds 1,512 bp linear RNA Accession: KX216636.1 GI: 1029979479 GenBankFASTAGraphicsPopSet Select item 10299794816. Zika virus isolate GS29-2016 envelope protein gene, partial cds 1,512 bp linear RNA Accession: KX216637.1 GI: 1029979481 GenBankFASTAGraphicsPopSet Select item 10299794837. Zika virus isolate ESS23-2015 envelope protein gene, partial cds 1,512 bp linear RNA Accession: KX216638.1 GI: 1029979483 GenBankFASTAGraphicsPopSet Select item 10299794858. Zika virus isolate SS57-2016 envelope protein gene, partial cds 1,512 bp linear RNA Accession: KX216639.1 GI: 1029979485 GenBankFASTAGraphicsPopSet Select item 10299794879. Zika virus isolate CKS63-2014 envelope protein gene, partial cds 1,512 bp linear RNA Accession: KX216640.1 GI: 1029979487 GenBankFASTAGraphicsPopSet Select item 103663743610. Zika virus isolate MS10-2016 envelope protein gene, partial cds 1,512 bp linear RNA Accession: KX380262.1 GI: 1036637436 GenBankFASTAGraphicsPopSet Select item 103663743811. Zika virus isolate FS92-2016 envelope protein gene, partial cds 1,512 bp linear RNA Accession: KX380263.1 GI: 1036637438 GenBankFASTAGraphicsPopSet Link to comment Share on other sites More sharing options...
niman Posted September 10, 2016 Author Report Share Posted September 10, 2016 Study Details First isolation of Zika virus in Australia from a clinical patient, imported from Tonga. Pyke,A.T. and Moore,P.R. Go to: Sequences in this data set KX216636.1Zika virus isolate SS27-2016 envelope protein gene, partial cds KX216635.1Zika virus isolate TS17-2016 envelope protein gene, partial cds KX216634.1Zika virus isolate TS14-2016 envelope protein gene, partial cds KX216633.1Zika virus isolate VS51-2016 envelope protein gene, partial cds KX216632.1Zika virus isolate SIS58-2015 envelope protein gene, partial cds Link to comment Share on other sites More sharing options...
niman Posted September 10, 2016 Author Report Share Posted September 10, 2016 First isolation of Zika virus in Australia from a clinical patient, imported from Tonga. Moore,P.R. and Pyke,A.T. Go to: Sequences in this data set KX216640.1Zika virus isolate CKS63-2014 envelope protein gene, partial cds KX216639.1Zika virus isolate SS57-2016 envelope protein gene, partial cds KX216638.1Zika virus isolate ESS23-2015 envelope protein gene, partial cds KX216637.1Zika virus isolate GS29-2016 envelope protein gene, partial cds Link to comment Share on other sites More sharing options...
niman Posted September 11, 2016 Author Report Share Posted September 11, 2016 LOCUS KX216634 1512 bp RNA linear VRL 07-SEP-2016 DEFINITION Zika virus isolate TS14-2016 envelope protein gene, partial cds. ACCESSION KX216634 VERSION KX216634.1 GI:1029979475 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 1512) AUTHORS Pyke,A.T. and Moore,P.R. TITLE First isolation of Zika virus in Australia from a clinical patient, imported from Tonga JOURNAL Unpublished REFERENCE 2 (bases 1 to 1512) AUTHORS Pyke,A.T. and Moore,P.R. TITLE Direct Submission JOURNAL Submitted (04-MAY-2016) Public Health Virology, Queensland Health Forensic and Scientific Services, 39 Kessels Road, Coopers Plains, QLD 4108, Australia COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1512 /organism="Zika virus" /mol_type="genomic RNA" /isolate="TS14-2016" /host="Homo sapiens" /db_xref="taxon:64320" /country="Tonga" /collection_date="2016" /note="genotype: Asian" CDS <1..>1512 /codon_start=1 /product="envelope protein" /protein_id="ANF28859.1" /db_xref="GI:1029979476" /translation="IRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSA" ORIGIN 1 atcaggtgca taggagtcag caatagggac tttgtggaag gtatgtcagg tgggacttgg 61 gttgatgttg tcttggaaca tggaggttgt gtcaccgtaa tggcacagga caaaccgact 121 gtcgacatag agctggttac aacaacagtc agcaacatgg cggaggtaag atcctactgc 181 tatgaggcat caatatcgga catggcttcg gacagccgct gcccaacaca aggtgaagcc 241 taccttgaca agcaatcaga cactcaatat gtctgcaaaa gaacgttagt ggacagaggc 301 tggggaaatg gatgtggact ttttggcaaa gggagcctgg tgacatgcgc taagtttgca 361 tgctccaaga aaatgaccgg gaagagcatc cagccagaga atctggagta ccggataatg 421 ctgtcagttc atggctccca gcacagtggg atgatcgtta atgacacagg acatgaaact 481 gatgagaata gagcgaaggt tgagataacg cccaattcac caagagccga agccaccctg 541 gggggttttg gaagcctagg acttgattgt gaaccgagga caggccttga cttttcagat 601 ttgtattact tgactatgaa taacaagcac tggttggttc acaaggagtg gttccacgac 661 attccattac cttggcacgc tggggcagac accggaactc cacactggaa caacaaagaa 721 gcactggtag agttcaagga cgcacatgcc aaaaggcaaa ctgtcgtggt tctagggagt 781 caagaaggag cagttcacac ggcccttgct ggagctctgg aggctgagat ggatggtgca 841 aagggaaggc tgtcctctgg ccacttgaaa tgtcgcctga aaatggataa acttagattg 901 aagggcgtgt catactcctt gtgtaccgca gcgttcacat tcaccaagat cccggctgaa 961 acactgcacg ggacagtcac agtggaggta cagtacgcag ggacagatgg accttgcaag 1021 gttccagctc agatggcggt ggacatgcaa actctgaccc cagttgggag gttgataacc 1081 gctaaccccg tgatcactga aagcactgag aactctaaga tgatgctgga acttgatcca 1141 ccatttgggg actcttacat tgtcatagga gtcggggaga agaagatcac ccaccactgg 1201 cacaggagtg gcagcaccat tggaaaagca tttgaagcca ctgtgagagg tgccaagaga 1261 atggcagtct tgggagacac agcctgggac tttggatcag ttggaggcgc tctcaactca 1321 ttgggcaagg gcatccatca aatttttgga gcagctttca aatcattgtt tggaggaatg 1381 tcctggttct cacaaattct cattggaacg ttgctgatgt ggttgggtct gaacacaaag 1441 aatggatcta tttcccttat gtgcttggcc ttagggggag tgttgatctt cttatccaca 1501 gccgtctctg ct Link to comment Share on other sites More sharing options...
niman Posted September 11, 2016 Author Report Share Posted September 11, 2016 Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KX216634.1| Zika virus isolate TS14-2016 envelope protein gene, partial cds 2727 2727 100% 0.0 100% KX216634.1 Select seq gb|KX447521.1| Zika virus isolate 1_0080_PF polyprotein gene, partial cds 2722 2722 100% 0.0 99% KX447521.1 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 2722 2722 100% 0.0 99% KX447509.1 Select seq gb|KX216635.1| Zika virus isolate TS17-2016 envelope protein gene, partial cds 2718 2718 100% 0.0 99% KX216635.1 Select seq gb|KX806557.1| Zika virus isolate TS17-2016, complete genome 2718 2718 100% 0.0 99% KX806557.1 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 2718 2718 100% 0.0 99% KJ776791.2 Select seq gb|KX447520.1| Zika virus isolate 1_0016_PF polyprotein gene, partial cds 2718 2718 100% 0.0 99% KX447520.1 Select seq gb|KX447519.1| Zika virus isolate 1_0199_PF polyprotein gene, partial cds 2718 2718 100% 0.0 99% KX447519.1 Select seq gb|KX447518.1| Zika virus isolate 1_0117_PF polyprotein gene, partial cds 2718 2718 100% 0.0 99% KX447518.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 2718 2718 100% 0.0 99% KX447516.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 2718 2718 100% 0.0 99% KX447515.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 2718 2718 100% 0.0 99% KX447513.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 2718 2718 100% 0.0 99% KX447510.1 Select seq gb|KX576684.1| Zika virus vector pZIKV-ICD, complete sequence 2718 2718 100% 0.0 99% KX576684.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 2718 2718 100% 0.0 99% KX369547.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 2718 2718 100% 0.0 99% KX280026.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 2718 2718 100% 0.0 99% KX262887.1 Select seq gb|KX216638.1| Zika virus isolate ESS23-2015 envelope protein gene, partial cds 2713 2713 100% 0.0 99% KX216638.1 Select seq gb|KX216637.1| Zika virus isolate GS29-2016 envelope protein gene, partial cds 2713 2713 100% 0.0 99% KX216637.1 Select seq gb|KX216632.1| Zika virus isolate SIS58-2015 envelope protein gene, partial cds 2713 2713 100% 0.0 99% KX216632.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 2713 2713 100% 0.0 99% KX694534.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 2713 2713 100% 0.0 99% KX447514.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 2713 2713 100% 0.0 99% KX447511.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 2713 2713 100% 0.0 99% KX446951.1 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 2713 2713 100% 0.0 99% KX247632.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 2713 2713 100% 0.0 99% KX051563.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 2713 2713 100% 0.0 99% KU509998.3 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 2713 2713 100% 0.0 99% KU991811.1 Select seq gb|KU646828.1| Zika virus isolate Si322 polyprotein gene, partial cds 2713 2713 100% 0.0 99% KU646828.1 Select seq gb|KX380263.1| Zika virus isolate FS92-2016 envelope protein gene, partial cds 2709 2709 100% 0.0 99% KX380263.1 Select seq gb|KX216640.1| Zika virus isolate CKS63-2014 envelope protein gene, partial cds 2709 2709 100% 0.0 99% KX216640.1 Select seq gb|KX216636.1| Zika virus isolate SS27-2016 envelope protein gene, partial cds 2709 2709 100% 0.0 99% KX216636.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 2709 2709 100% 0.0 99% KX197205.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 2709 2709 100% 0.0 99% KX447512.1 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 2709 2709 100% 0.0 99% KX266255.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 2709 2709 100% 0.0 99% KX446950.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 2709 2709 100% 0.0 99% KU866423.2 Select seq gb|KU758871.1| Zika virus isolate 17170 polyprotein gene, partial cds 2709 2709 100% 0.0 99% KU758871.1 Select seq gb|KU758870.1| Zika virus isolate 17160 polyprotein gene, partial cds 2709 2709 100% 0.0 99% KU758870.1 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 2709 2709 100% 0.0 99% KX253996.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 2709 2709 100% 0.0 99% KX247646.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 2709 2709 100% 0.0 99% KX198135.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 2709 2709 100% 0.0 99% KX197192.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 2709 2709 100% 0.0 99% KX185891.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 2709 2709 100% 0.0 99% KX156776.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 2709 2709 100% 0.0 99% KX156775.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 2709 2709 100% 0.0 99% KX156774.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 2709 2709 100% 0.0 99% KX117076.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 2709 2709 100% 0.0 99% KU963796.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 2709 2709 100% 0.0 99% KU955589.1 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 2709 2709 100% 0.0 99% KU870645.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 2709 2709 100% 0.0 99% KU922960.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 2709 2709 100% 0.0 99% KU922923.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 2709 2709 100% 0.0 99% KU820899.2 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 2709 2709 100% 0.0 99% KU729218.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 2709 2709 100% 0.0 99% KU527068.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 2709 2709 100% 0.0 99% KU647676.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 2709 2709 100% 0.0 99% KU321639.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 2706 2706 100% 0.0 99% KX766028.1 Select seq gb|KX380262.1| Zika virus isolate MS10-2016 envelope protein gene, partial cds 2704 2704 100% 0.0 99% KX380262.1 Select seq gb|KX216633.1| Zika virus isolate VS51-2016 envelope protein gene, partial cds 2704 2704 100% 0.0 99% KX216633.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 2704 2704 100% 0.0 99% KU820897.5 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 2704 2704 100% 0.0 99% KX766029.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 2704 2704 100% 0.0 99% KX447517.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 2704 2704 100% 0.0 99% KX520666.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 2704 2704 100% 0.0 99% KU758877.1 Select seq gb|KU758873.1| Zika virus isolate 18246 polyprotein gene, partial cds 2704 2704 100% 0.0 99% KU758873.1 Select seq gb|KU758869.1| Zika virus isolate 05211 polyprotein gene, partial cds 2704 2704 100% 0.0 99% KU758869.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 2704 2704 100% 0.0 99% KU937936.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 2704 2704 100% 0.0 99% KX087102.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 2704 2704 100% 0.0 99% KU940228.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 2704 2704 100% 0.0 99% KU926309.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 2704 2704 100% 0.0 99% KU497555.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 2704 2704 100% 0.0 99% KU501217.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 2704 2704 100% 0.0 99% KU501216.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 2704 2704 100% 0.0 99% KU365778.1 Select seq gb|KU312315.1| Zika virus isolate Z1106027 polyprotein gene, partial cds 2704 2704 100% 0.0 99% KU312315.1 Select seq gb|KU312314.1| Zika virus isolate Z1106031 polyprotein gene, partial cds 2704 2704 100% 0.0 99% KU312314.1 Select seq gb|KJ634273.1| Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds 2704 2704 100% 0.0 99% KJ634273.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 2700 2700 100% 0.0 99% KX702400.1 Select seq dbj|LC171327.1| Zika virus gene for polyprotein, partial cds, strain: ZIKV/Hu/Chiba/S36/2016 2700 2700 100% 0.0 99% LC171327.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 2700 2700 100% 0.0 99% KX548902.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 2700 2700 100% 0.0 99% KX377337.1 Select seq gb|KU758874.1| Zika virus isolate 20114 polyprotein gene, partial cds 2700 2700 100% 0.0 99% KU758874.1 Select seq gb|KU758868.1| Zika virus isolate 27229 polyprotein gene, partial cds 2700 2700 100% 0.0 99% KU758868.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 2700 2700 100% 0.0 99% KU820898.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 2700 2700 100% 0.0 99% KU740184.2 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 2700 2700 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 2700 2700 100% 0.0 99% KU853012.1 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 2700 2700 100% 0.0 99% KU761564.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 2700 2700 100% 0.0 99% KU707826.1 Select seq gb|KU646827.1| Zika virus isolate Si323 polyprotein gene, partial cds 2700 2700 100% 0.0 99% KU646827.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 2700 2700 100% 0.0 99% KU501215.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 2700 2700 100% 0.0 99% KU365780.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 2700 2700 100% 0.0 99% KU365779.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 2700 2700 100% 0.0 99% KU365777.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 2695 2695 100% 0.0 99% KX673530.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 2695 2695 100% 0.0 99% KX601168.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 2695 2695 100% 0.0 99% KX087101.2 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 2695 2695 100% 0.0 99% KX056898.1 Link to comment Share on other sites More sharing options...
niman Posted September 11, 2016 Author Report Share Posted September 11, 2016 LOCUS KX216635 1512 bp RNA linear VRL 07-SEP-2016 DEFINITION Zika virus isolate TS17-2016 envelope protein gene, partial cds. ACCESSION KX216635 VERSION KX216635.1 GI:1029979477 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 1512) AUTHORS Pyke,A.T. and Moore,P.R. TITLE First isolation of Zika virus in Australia from a clinical patient, imported from Tonga JOURNAL Unpublished REFERENCE 2 (bases 1 to 1512) AUTHORS Pyke,A.T. and Moore,P.R. TITLE Direct Submission JOURNAL Submitted (04-MAY-2016) Public Health Virology, Queensland Health Forensic and Scientific Services, 39 Kessels Road, Coopers Plains, QLD 4108, Australia COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1512 /organism="Zika virus" /mol_type="genomic RNA" /isolate="TS17-2016" /host="Homo sapiens" /db_xref="taxon:64320" /country="Tonga" /collection_date="2016" /note="genotype: Asian" CDS <1..>1512 /codon_start=1 /product="envelope protein" /protein_id="ANF28860.1" /db_xref="GI:1029979478" /translation="IRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSA" ORIGIN 1 atcaggtgca taggagtcag caatagggac tttgtggaag gtatgtcagg tgggacttgg 61 gttgatgttg tcttggaaca tggaggttgt gtcaccgtaa tggcacagga caaaccgact 121 gtcgacatag agctggttac aacaacagtc agcaacatgg cggaggtaag atcctactgc 181 tatgaggcat caatatcgga catggcttcg gacagccgct gcccaacaca aggtgaagcc 241 taccttgaca agcaatcaga cactcaatat gtctgcaaaa gaacgttagt ggacagaggc 301 tggggaaatg gatgtggact ttttggcaaa gggagcctgg tgacatgcgc taagtttgca 361 tgctccaaga aaatgaccgg gaagagcatc cagccagaga atctggagta ccggataatg 421 ctgtcagttc atggctccca gcacagtggg atgatcgtta atgacacagg acatgaaact 481 gatgagaata gagcgaaggt tgagataacg cccaattcac caagagccga agccaccctg 541 gggggttttg gaagcctagg acttgattgt gaaccgagga caggccttga cttttcagat 601 ttgtattact tgactatgaa taacaagcac tggttggttc acaaggagtg gttccacgac 661 attccattac cttggcacgc tggggcagac accggaactc cacactggaa caacaaagaa 721 gcactggtag agttcaagga cgcacatgcc aaaaggcaaa ctgtcgtggt tctagggagt 781 caagaaggag cagttcacac ggcccttgct ggagctctgg aggctgagat ggatggtgca 841 aagggaaggc tgtcctctgg ccacttgaaa tgtcgcctga aaatggataa acttagattg 901 aagggcgtgt catactcctt gtgtaccgca gcgttcacat tcaccaagat cccggctgaa 961 acactgcacg ggacagtcac agtggaggta cagtacgcag ggacagatgg accttgcaag 1021 gtcccagctc agatggcggt ggacatgcaa actctgaccc cagttgggag gttgataacc 1081 gctaaccccg taatcactga aagcactgag aactctaaga tgatgctgga acttgatcca 1141 ccatttgggg actcttacat tgtcatagga gtcggggaga agaagatcac ccaccactgg 1201 cacaggagtg gcagcaccat tggaaaagca tttgaagcca ctgtgagagg tgccaagaga 1261 atggcagtct tgggagacac agcctgggac tttggatcag ttggaggcgc tctcaactca 1321 ttgggcaagg gcatccatca aatttttgga gcagctttca aatcattgtt tggaggaatg 1381 tcctggttct cacaaattct cattggaacg ttgctgatgt ggttgggtct gaacacaaag 1441 aatggatcta tttcccttat gtgcttggcc ttagggggag tgttgatctt cttatccaca 1501 gccgtctctg ct Link to comment Share on other sites More sharing options...
niman Posted September 11, 2016 Author Report Share Posted September 11, 2016 Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KX216635.1| Zika virus isolate TS17-2016 envelope protein gene, partial cds 2727 2727 100% 0.0 100% KX216635.1 Select seq gb|KX806557.1| Zika virus isolate TS17-2016, complete genome 2727 2727 100% 0.0 100% KX806557.1 Select seq gb|KX447521.1| Zika virus isolate 1_0080_PF polyprotein gene, partial cds 2722 2722 100% 0.0 99% KX447521.1 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 2722 2722 100% 0.0 99% KX447509.1 Select seq gb|KX216634.1| Zika virus isolate TS14-2016 envelope protein gene, partial cds 2718 2718 100% 0.0 99% KX216634.1 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 2718 2718 100% 0.0 99% KJ776791.2 Select seq gb|KX447520.1| Zika virus isolate 1_0016_PF polyprotein gene, partial cds 2718 2718 100% 0.0 99% KX447520.1 Select seq gb|KX447519.1| Zika virus isolate 1_0199_PF polyprotein gene, partial cds 2718 2718 100% 0.0 99% KX447519.1 Select seq gb|KX447518.1| Zika virus isolate 1_0117_PF polyprotein gene, partial cds 2718 2718 100% 0.0 99% KX447518.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 2718 2718 100% 0.0 99% KX447516.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 2718 2718 100% 0.0 99% KX447515.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 2718 2718 100% 0.0 99% KX447513.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 2718 2718 100% 0.0 99% KX447510.1 Select seq gb|KX576684.1| Zika virus vector pZIKV-ICD, complete sequence 2718 2718 100% 0.0 99% KX576684.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 2718 2718 100% 0.0 99% KX369547.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 2718 2718 100% 0.0 99% KX280026.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 2718 2718 100% 0.0 99% KX262887.1 Select seq gb|KX216638.1| Zika virus isolate ESS23-2015 envelope protein gene, partial cds 2713 2713 100% 0.0 99% KX216638.1 Select seq gb|KX216637.1| Zika virus isolate GS29-2016 envelope protein gene, partial cds 2713 2713 100% 0.0 99% KX216637.1 Select seq gb|KX216632.1| Zika virus isolate SIS58-2015 envelope protein gene, partial cds 2713 2713 100% 0.0 99% KX216632.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 2713 2713 100% 0.0 99% KX694534.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 2713 2713 100% 0.0 99% KX447514.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 2713 2713 100% 0.0 99% KX447511.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 2713 2713 100% 0.0 99% KX446951.1 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 2713 2713 100% 0.0 99% KX247632.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 2713 2713 100% 0.0 99% KX051563.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 2713 2713 100% 0.0 99% KU509998.3 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 2713 2713 100% 0.0 99% KU991811.1 Select seq gb|KU646828.1| Zika virus isolate Si322 polyprotein gene, partial cds 2713 2713 100% 0.0 99% KU646828.1 Select seq gb|KX380263.1| Zika virus isolate FS92-2016 envelope protein gene, partial cds 2709 2709 100% 0.0 99% KX380263.1 Select seq gb|KX216640.1| Zika virus isolate CKS63-2014 envelope protein gene, partial cds 2709 2709 100% 0.0 99% KX216640.1 Select seq gb|KX216636.1| Zika virus isolate SS27-2016 envelope protein gene, partial cds 2709 2709 100% 0.0 99% KX216636.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 2709 2709 100% 0.0 99% KX197205.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 2709 2709 100% 0.0 99% KX447512.1 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 2709 2709 100% 0.0 99% KX266255.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 2709 2709 100% 0.0 99% KX446950.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 2709 2709 100% 0.0 99% KU866423.2 Select seq gb|KU758871.1| Zika virus isolate 17170 polyprotein gene, partial cds 2709 2709 100% 0.0 99% KU758871.1 Select seq gb|KU758870.1| Zika virus isolate 17160 polyprotein gene, partial cds 2709 2709 100% 0.0 99% KU758870.1 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 2709 2709 100% 0.0 99% KX253996.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 2709 2709 100% 0.0 99% KX247646.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 2709 2709 100% 0.0 99% KX198135.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 2709 2709 100% 0.0 99% KX197192.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 2709 2709 100% 0.0 99% KX185891.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 2709 2709 100% 0.0 99% KX156776.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 2709 2709 100% 0.0 99% KX156775.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 2709 2709 100% 0.0 99% KX156774.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 2709 2709 100% 0.0 99% KX117076.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 2709 2709 100% 0.0 99% KU963796.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 2709 2709 100% 0.0 99% KU955589.1 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 2709 2709 100% 0.0 99% KU870645.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 2709 2709 100% 0.0 99% KU922960.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 2709 2709 100% 0.0 99% KU922923.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 2709 2709 100% 0.0 99% KU820899.2 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 2709 2709 100% 0.0 99% KU729218.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 2709 2709 100% 0.0 99% KU527068.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 2709 2709 100% 0.0 99% KU647676.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 2709 2709 100% 0.0 99% KU321639.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 2706 2706 100% 0.0 99% KX766028.1 Select seq gb|KX380262.1| Zika virus isolate MS10-2016 envelope protein gene, partial cds 2704 2704 100% 0.0 99% KX380262.1 Select seq gb|KX216633.1| Zika virus isolate VS51-2016 envelope protein gene, partial cds 2704 2704 100% 0.0 99% KX216633.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 2704 2704 100% 0.0 99% KU820897.5 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 2704 2704 100% 0.0 99% KX766029.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 2704 2704 100% 0.0 99% KX447517.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 2704 2704 100% 0.0 99% KX520666.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 2704 2704 100% 0.0 99% KU758877.1 Select seq gb|KU758873.1| Zika virus isolate 18246 polyprotein gene, partial cds 2704 2704 100% 0.0 99% KU758873.1 Select seq gb|KU758869.1| Zika virus isolate 05211 polyprotein gene, partial cds 2704 2704 100% 0.0 99% KU758869.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 2704 2704 100% 0.0 99% KU937936.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 2704 2704 100% 0.0 99% KX087102.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 2704 2704 100% 0.0 99% KU940228.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 2704 2704 100% 0.0 99% KU926309.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 2704 2704 100% 0.0 99% KU497555.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 2704 2704 100% 0.0 99% KU501217.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 2704 2704 100% 0.0 99% KU501216.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 2704 2704 100% 0.0 99% KU365778.1 Select seq gb|KU312315.1| Zika virus isolate Z1106027 polyprotein gene, partial cds 2704 2704 100% 0.0 99% KU312315.1 Select seq gb|KU312314.1| Zika virus isolate Z1106031 polyprotein gene, partial cds 2704 2704 100% 0.0 99% KU312314.1 Select seq gb|KJ634273.1| Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds 2704 2704 100% 0.0 99% KJ634273.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 2700 2700 100% 0.0 99% KX702400.1 Select seq dbj|LC171327.1| Zika virus gene for polyprotein, partial cds, strain: ZIKV/Hu/Chiba/S36/2016 2700 2700 100% 0.0 99% LC171327.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 2700 2700 100% 0.0 99% KX548902.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 2700 2700 100% 0.0 99% KX377337.1 Select seq gb|KU758874.1| Zika virus isolate 20114 polyprotein gene, partial cds 2700 2700 100% 0.0 99% KU758874.1 Select seq gb|KU758868.1| Zika virus isolate 27229 polyprotein gene, partial cds 2700 2700 100% 0.0 99% KU758868.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 2700 2700 100% 0.0 99% KU820898.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 2700 2700 100% 0.0 99% KU740184.2 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 2700 2700 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 2700 2700 100% 0.0 99% KU853012.1 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 2700 2700 100% 0.0 99% KU761564.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 2700 2700 100% 0.0 99% KU707826.1 Select seq gb|KU646827.1| Zika virus isolate Si323 polyprotein gene, partial cds 2700 2700 100% 0.0 99% KU646827.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 2700 2700 100% 0.0 99% KU501215.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 2700 2700 100% 0.0 99% KU365780.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 2700 2700 100% 0.0 99% KU365779.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 2700 2700 100% 0.0 99% KU365777.1 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 2697 2697 100% 0.0 99% KU940224.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 2695 2695 100% 0.0 99% KX673530.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 2695 2695 100% 0.0 99% KX601168.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 2695 2695 100% 0.0 99% KX056898.1 Link to comment Share on other sites More sharing options...
niman Posted September 11, 2016 Author Report Share Posted September 11, 2016 LOCUS KX380263 1512 bp RNA linear VRL 07-SEP-2016 DEFINITION Zika virus isolate FS92-2016 envelope protein gene, partial cds. ACCESSION KX380263 VERSION KX380263.1 GI:1036637438 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 1512) AUTHORS Pyke,A.T. and Moore,P.R. TITLE First isolation of Zika virus in Australia from a clinical patient, imported from Tonga JOURNAL Unpublished REFERENCE 2 (bases 1 to 1512) AUTHORS Pyke,A.T. and Moore,P.R. TITLE Direct Submission JOURNAL Submitted (14-JUN-2016) Public Health Virology, Queensland Health Forensic and Scientific Services, 39 Kessels Road, Coopers Plains, QLD 4108, Australia COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1512 /organism="Zika virus" /mol_type="genomic RNA" /isolate="FS92-2016" /host="Homo sapiens" /db_xref="taxon:64320" /country="Fiji" /collection_date="2016" /note="genotype: Asian" CDS <1..>1512 /codon_start=1 /product="envelope protein" /protein_id="ANK57899.1" /db_xref="GI:1036637439" /translation="IRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSA" ORIGIN 1 atcaggtgca taggagtcag caatagggac tttgtggaag gtatgtcagg tgggacttgg 61 gttgatgttg tcttggaaca tggaggttgt gtcaccgtaa tggcacagga caaaccgact 121 gtcgacatag agctggttac aacaacagtc agcaacatgg cggaggtaag atcctactgc 181 tatgaggcat caatatcgga catggcttcg gacagccgct gcccaacaca aggtgaagcc 241 taccttgaca agcaatcaga cactcaatat gtctgcaaaa gaacgttagt ggacagaggc 301 tggggaaatg gatgtggact ttttggcaaa gggagcctgg tgacctgcgc taagtttgca 361 tgctccaaga aaatgaccgg gaagagcatc cagccagaga atctggagta ccggataatg 421 ctgtcagttc atggctccca gcacagtggg atgatcgtta atgacacagg acatgaaact 481 gatgagaata gagcgaaggt tgagataacg cccaattcac caagagccga agccaccctg 541 gggggttttg gaagcctagg acttgattgt gaaccgagga caggccttga cttttcagat 601 ttgtattact tgactatgaa taacaagcac tggttggttc acaaggagtg gttccacgac 661 attccattac cttggcacgc tggggcagac accggaactc cacactggaa caacaaagaa 721 gcactggtag agttcaagga cgcacatgcc aaaaggcaga ctgtcgtggt tctagggagt 781 caagaaggag cagttcacac ggcccttgct ggagctctgg aggctgagat ggatggtgca 841 aagggaaggc tgtcctctgg ccacttgaaa tgtcgcctga aaatggataa acttagattg 901 aagggcgtgt catactcctt gtgtaccgca gcgttcacat tcaccaagat cccggctgaa 961 acactgcacg ggacagtcac agtggaggta cagtacgcag ggacagatgg accttgcaag 1021 gttccagctc agatggcggt ggacatgcaa actctgaccc cagttgggag gttgataacc 1081 gctaaccctg taatcactga aagcactgag aactctaaga tgatgctgga acttgatcca 1141 ccatttgggg actcttacat tgtcatagga gtcggggaga agaagatcac ccaccactgg 1201 cacaggagtg gcagcaccat tggaaaagca tttgaagcca ctgtgagagg tgccaagaga 1261 atggcagtct tgggagacac agcctgggac tttggatcag ttggaggcgc tctcaactca 1321 ttgggcaagg gcatccatca aatttttgga gcagctttca aatcattgtt tggaggaatg 1381 tcctggttct cacaaattct cattggaacg ttgctgatgt ggttgggtct gaacacaaag 1441 aatggatcta tttcccttat gtgcttggcc ttagggggag tgttgatctt cttatccaca 1501 gccgtctctg ct Link to comment Share on other sites More sharing options...
niman Posted September 11, 2016 Author Report Share Posted September 11, 2016 Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KX380263.1| Zika virus isolate FS92-2016 envelope protein gene, partial cds 2727 2727 100% 0.0 100% KX380263.1 Select seq gb|KX447521.1| Zika virus isolate 1_0080_PF polyprotein gene, partial cds 2713 2713 100% 0.0 99% KX447521.1 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 2713 2713 100% 0.0 99% KX447509.1 Select seq gb|KX216635.1| Zika virus isolate TS17-2016 envelope protein gene, partial cds 2709 2709 100% 0.0 99% KX216635.1 Select seq gb|KX216634.1| Zika virus isolate TS14-2016 envelope protein gene, partial cds 2709 2709 100% 0.0 99% KX216634.1 Select seq gb|KX806557.1| Zika virus isolate TS17-2016, complete genome 2709 2709 100% 0.0 99% KX806557.1 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 2709 2709 100% 0.0 99% KJ776791.2 Select seq gb|KX447520.1| Zika virus isolate 1_0016_PF polyprotein gene, partial cds 2709 2709 100% 0.0 99% KX447520.1 Select seq gb|KX447519.1| Zika virus isolate 1_0199_PF polyprotein gene, partial cds 2709 2709 100% 0.0 99% KX447519.1 Select seq gb|KX447518.1| Zika virus isolate 1_0117_PF polyprotein gene, partial cds 2709 2709 100% 0.0 99% KX447518.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 2709 2709 100% 0.0 99% KX447516.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 2709 2709 100% 0.0 99% KX447515.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 2709 2709 100% 0.0 99% KX447513.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 2709 2709 100% 0.0 99% KX447510.1 Select seq dbj|LC171327.1| Zika virus gene for polyprotein, partial cds, strain: ZIKV/Hu/Chiba/S36/2016 2709 2709 100% 0.0 99% LC171327.1 Select seq gb|KX576684.1| Zika virus vector pZIKV-ICD, complete sequence 2709 2709 100% 0.0 99% KX576684.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 2709 2709 100% 0.0 99% KX369547.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 2709 2709 100% 0.0 99% KX280026.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 2709 2709 100% 0.0 99% KX262887.1 Select seq gb|KX216638.1| Zika virus isolate ESS23-2015 envelope protein gene, partial cds 2704 2704 100% 0.0 99% KX216638.1 Select seq gb|KX216637.1| Zika virus isolate GS29-2016 envelope protein gene, partial cds 2704 2704 100% 0.0 99% KX216637.1 Select seq gb|KX216632.1| Zika virus isolate SIS58-2015 envelope protein gene, partial cds 2704 2704 100% 0.0 99% KX216632.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 2704 2704 100% 0.0 99% KX694534.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 2704 2704 100% 0.0 99% KX447517.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 2704 2704 100% 0.0 99% KX447514.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 2704 2704 100% 0.0 99% KX447511.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 2704 2704 100% 0.0 99% KX446951.1 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 2704 2704 100% 0.0 99% KX247632.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 2704 2704 100% 0.0 99% KX051563.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 2704 2704 100% 0.0 99% KU509998.3 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 2704 2704 100% 0.0 99% KU991811.1 Select seq gb|KU646828.1| Zika virus isolate Si322 polyprotein gene, partial cds 2704 2704 100% 0.0 99% KU646828.1 Select seq gb|KX216640.1| Zika virus isolate CKS63-2014 envelope protein gene, partial cds 2700 2700 100% 0.0 99% KX216640.1 Select seq gb|KX216636.1| Zika virus isolate SS27-2016 envelope protein gene, partial cds 2700 2700 100% 0.0 99% KX216636.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 2700 2700 100% 0.0 99% KX197205.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 2700 2700 100% 0.0 99% KX447512.1 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 2700 2700 100% 0.0 99% KX266255.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 2700 2700 100% 0.0 99% KX446950.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 2700 2700 100% 0.0 99% KU866423.2 Select seq gb|KU758871.1| Zika virus isolate 17170 polyprotein gene, partial cds 2700 2700 100% 0.0 99% KU758871.1 Select seq gb|KU758870.1| Zika virus isolate 17160 polyprotein gene, partial cds 2700 2700 100% 0.0 99% KU758870.1 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 2700 2700 100% 0.0 99% KX253996.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 2700 2700 100% 0.0 99% KX247646.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 2700 2700 100% 0.0 99% KX198135.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 2700 2700 100% 0.0 99% KX197192.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 2700 2700 100% 0.0 99% KX185891.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 2700 2700 100% 0.0 99% KX156776.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 2700 2700 100% 0.0 99% KX156775.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 2700 2700 100% 0.0 99% KX156774.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 2700 2700 100% 0.0 99% KX117076.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 2700 2700 100% 0.0 99% KU963796.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 2700 2700 100% 0.0 99% KU955589.1 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 2700 2700 100% 0.0 99% KU870645.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 2700 2700 100% 0.0 99% KU922960.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 2700 2700 100% 0.0 99% KU922923.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 2700 2700 100% 0.0 99% KU820899.2 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 2700 2700 100% 0.0 99% KU729218.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 2700 2700 100% 0.0 99% KU527068.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 2700 2700 100% 0.0 99% KU647676.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 2700 2700 100% 0.0 99% KU321639.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 2697 2697 100% 0.0 99% KX766028.1 Select seq gb|KX380262.1| Zika virus isolate MS10-2016 envelope protein gene, partial cds 2695 2695 100% 0.0 99% KX380262.1 Select seq gb|KX216633.1| Zika virus isolate VS51-2016 envelope protein gene, partial cds 2695 2695 100% 0.0 99% KX216633.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 2695 2695 100% 0.0 99% KU820897.5 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 2695 2695 100% 0.0 99% KX766029.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 2695 2695 100% 0.0 99% KX520666.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 2695 2695 100% 0.0 99% KU758877.1 Select seq gb|KU758873.1| Zika virus isolate 18246 polyprotein gene, partial cds 2695 2695 100% 0.0 99% KU758873.1 Select seq gb|KU758869.1| Zika virus isolate 05211 polyprotein gene, partial cds 2695 2695 100% 0.0 99% KU758869.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 2695 2695 100% 0.0 99% KU937936.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 2695 2695 100% 0.0 99% KX087102.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 2695 2695 100% 0.0 99% KU940228.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 2695 2695 100% 0.0 99% KU926309.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 2695 2695 100% 0.0 99% KU497555.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 2695 2695 100% 0.0 99% KU501217.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 2695 2695 100% 0.0 99% KU501216.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 2695 2695 100% 0.0 99% KU365778.1 Select seq gb|KU312315.1| Zika virus isolate Z1106027 polyprotein gene, partial cds 2695 2695 100% 0.0 99% KU312315.1 Select seq gb|KU312314.1| Zika virus isolate Z1106031 polyprotein gene, partial cds 2695 2695 100% 0.0 99% KU312314.1 Select seq gb|KJ634273.1| Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds 2695 2695 100% 0.0 99% KJ634273.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 2691 2691 100% 0.0 99% KX702400.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 2691 2691 100% 0.0 99% KX548902.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 2691 2691 100% 0.0 99% KX377337.1 Select seq gb|KU758874.1| Zika virus isolate 20114 polyprotein gene, partial cds 2691 2691 100% 0.0 99% KU758874.1 Select seq gb|KU758868.1| Zika virus isolate 27229 polyprotein gene, partial cds 2691 2691 100% 0.0 99% KU758868.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 2691 2691 100% 0.0 99% KU820898.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 2691 2691 100% 0.0 99% KU740184.2 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 2691 2691 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 2691 2691 100% 0.0 99% KU853012.1 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 2691 2691 100% 0.0 99% KU761564.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 2691 2691 100% 0.0 99% KU707826.1 Select seq gb|KU646827.1| Zika virus isolate Si323 polyprotein gene, partial cds 2691 2691 100% 0.0 99% KU646827.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 2691 2691 100% 0.0 99% KU501215.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 2691 2691 100% 0.0 99% KU365780.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 2691 2691 100% 0.0 99% KU365779.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 2691 2691 100% 0.0 99% KU365777.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 2686 2686 100% 0.0 99% KX673530.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 2686 2686 100% 0.0 99% KX601168.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 2686 2686 100% 0.0 99% KX087101.2 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 2686 2686 100% 0.0 99% KX056898.1 Link to comment Share on other sites More sharing options...
niman Posted September 12, 2016 Author Report Share Posted September 12, 2016 LOCUS KX216632 1512 bp RNA linear VRL 07-SEP-2016 DEFINITION Zika virus isolate SIS58-2015 envelope protein gene, partial cds. ACCESSION KX216632 VERSION KX216632.1 GI:1029979471 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 1512) AUTHORS Pyke,A.T. and Moore,P.R. TITLE First isolation of Zika virus in Australia from a clinical patient, imported from Tonga JOURNAL Unpublished REFERENCE 2 (bases 1 to 1512) AUTHORS Pyke,A.T. and Moore,P.R. TITLE Direct Submission JOURNAL Submitted (04-MAY-2016) Public Health Virology, Queensland Health Forensic and Scientific Services, 39 Kessels Road, Coopers Plains, QLD 4108, Australia COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1512 /organism="Zika virus" /mol_type="genomic RNA" /isolate="SIS58-2015" /host="Homo sapiens" /db_xref="taxon:64320" /country="Solomon Islands" /collection_date="2015" /note="genotype: Asian" CDS <1..>1512 /codon_start=1 /product="envelope protein" /protein_id="ANF28857.1" /db_xref="GI:1029979472" /translation="IRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNSKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSA" ORIGIN 1 atcaggtgca taggagtcag caatagggac tttgtggaag gtatgtcagg tgggacttgg 61 gttgatgttg tcttggaaca tggaggttgt gtcaccgtaa tggcacagga caaaccgact 121 gtcgacatag agctggttac aacaacagtc agcaacatgg cggaggtaag atcctactgc 181 tatgaggcat caatatcgga catggcttcg gacagccgct gcccaacaca aggtgaagcc 241 taccttgaca agcaatcaga cactcaatat gtctgcaaaa gaacgttagt ggacagaggc 301 tggggaaatg gatgtggact ttttggcaaa gggagcctgg tgacatgcgc taagtttgca 361 tgctccaaga aaatgaccgg gaagagcatc cagccagaga atctggagta ccggataatg 421 ctgtcagttc atggctccca gcacagtggg atgatcgtta atgacacagg acatgaaact 481 gatgagaata gagcgaaggt tgagataacg cccaattcac caagagccga agccaccctg 541 gggggttttg gaagcctagg acttgattgt gaaccgagga caggccttga cttttcagat 601 ttgtattact tgactatgaa tagcaagcac tggttggttc acaaggagtg gttccacgac 661 attccattac cttggcacgc tggggcagac accggaactc cacactggaa caacaaagaa 721 gcactggtag agttcaagga cgcacatgcc aaaaggcaaa ctgtcgtggt tctagggagt 781 caagaaggag cagttcacac ggcccttgct ggagctctgg aggctgagat ggatggtgca 841 aagggaaggc tgtcctctgg ccacttgaaa tgtcgcctga aaatggataa acttagattg 901 aagggcgtgt catactcctt gtgtaccgca gcgttcacat tcaccaagat cccggctgaa 961 acactgcacg ggacagtcac agtggaggta cagtacgcag ggacagatgg gccttgcaag 1021 gttccagctc agatggcggt ggacatgcaa actctgaccc cagttgggag gttgataacc 1081 gctaaccccg taatcactga aagcactgag aactctaaga tgatgctgga acttgatcca 1141 ccatttgggg actcttacat tgtcatagga gtcggggaga agaagatcac ccaccactgg 1201 cacaggagtg gcagcaccat tggaaaagca tttgaagcca ctgtgagagg tgccaagaga 1261 atggcagtct tgggagacac agcctgggac tttggatcag ttggaggcgc tctcaactca 1321 ttgggcaagg gcatccatca aatttttgga gcagctttca aatcattgtt tggaggaatg 1381 tcctggttct cacaaattct cattggaacg ttgctgatgt ggttgggtct gaacacaaag 1441 aatggatcta tttcccttat gtgcttggcc ttagggggag tgttgatctt cttatccaca 1501 gccgtctctg ct Link to comment Share on other sites More sharing options...
niman Posted September 12, 2016 Author Report Share Posted September 12, 2016 Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KX216632.1| Zika virus isolate SIS58-2015 envelope protein gene, partial cds 2793 2793 100% 0.0 100% KX216632.1 Select seq gb|KX447521.1| Zika virus isolate 1_0080_PF polyprotein gene, partial cds 2782 2782 100% 0.0 99% KX447521.1 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 2782 2782 100% 0.0 99% KX447509.1 Select seq gb|KX216635.1| Zika virus isolate TS17-2016 envelope protein gene, partial cds 2776 2776 100% 0.0 99% KX216635.1 Select seq gb|KX216634.1| Zika virus isolate TS14-2016 envelope protein gene, partial cds 2776 2776 100% 0.0 99% KX216634.1 Select seq gb|KX806557.1| Zika virus isolate TS17-2016, complete genome 2776 2776 100% 0.0 99% KX806557.1 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 2776 2776 100% 0.0 99% KJ776791.2 Select seq gb|KX447520.1| Zika virus isolate 1_0016_PF polyprotein gene, partial cds 2776 2776 100% 0.0 99% KX447520.1 Select seq gb|KX447519.1| Zika virus isolate 1_0199_PF polyprotein gene, partial cds 2776 2776 100% 0.0 99% KX447519.1 Select seq gb|KX447518.1| Zika virus isolate 1_0117_PF polyprotein gene, partial cds 2776 2776 100% 0.0 99% KX447518.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 2776 2776 100% 0.0 99% KX447516.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 2776 2776 100% 0.0 99% KX447515.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 2776 2776 100% 0.0 99% KX447513.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 2776 2776 100% 0.0 99% KX447510.1 Select seq gb|KX576684.1| Zika virus vector pZIKV-ICD, complete sequence 2776 2776 100% 0.0 99% KX576684.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 2776 2776 100% 0.0 99% KX369547.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 2776 2776 100% 0.0 99% KX280026.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 2776 2776 100% 0.0 99% KX262887.1 Select seq gb|KX216638.1| Zika virus isolate ESS23-2015 envelope protein gene, partial cds 2771 2771 100% 0.0 99% KX216638.1 Select seq gb|KX216637.1| Zika virus isolate GS29-2016 envelope protein gene, partial cds 2771 2771 100% 0.0 99% KX216637.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 2771 2771 100% 0.0 99% KX694534.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 2771 2771 100% 0.0 99% KX447514.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 2771 2771 100% 0.0 99% KX447511.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 2771 2771 100% 0.0 99% KX446951.1 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 2771 2771 100% 0.0 99% KX247632.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 2771 2771 100% 0.0 99% KX051563.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 2771 2771 100% 0.0 99% KU509998.3 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 2771 2771 100% 0.0 99% KU991811.1 Select seq gb|KU646828.1| Zika virus isolate Si322 polyprotein gene, partial cds 2771 2771 100% 0.0 99% KU646828.1 Select seq gb|KX380263.1| Zika virus isolate FS92-2016 envelope protein gene, partial cds 2765 2765 100% 0.0 99% KX380263.1 Select seq gb|KX216640.1| Zika virus isolate CKS63-2014 envelope protein gene, partial cds 2765 2765 100% 0.0 99% KX216640.1 Select seq gb|KX216636.1| Zika virus isolate SS27-2016 envelope protein gene, partial cds 2765 2765 100% 0.0 99% KX216636.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 2765 2765 100% 0.0 99% KX197205.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 2765 2765 100% 0.0 99% KX447512.1 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 2765 2765 100% 0.0 99% KX266255.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 2765 2765 100% 0.0 99% KX446950.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 2765 2765 100% 0.0 99% KU866423.2 Select seq gb|KU758871.1| Zika virus isolate 17170 polyprotein gene, partial cds 2765 2765 100% 0.0 99% KU758871.1 Select seq gb|KU758870.1| Zika virus isolate 17160 polyprotein gene, partial cds 2765 2765 100% 0.0 99% KU758870.1 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 2765 2765 100% 0.0 99% KX253996.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 2765 2765 100% 0.0 99% KX247646.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 2765 2765 100% 0.0 99% KX198135.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 2765 2765 100% 0.0 99% KX197192.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 2765 2765 100% 0.0 99% KX185891.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 2765 2765 100% 0.0 99% KX156776.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 2765 2765 100% 0.0 99% KX156775.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 2765 2765 100% 0.0 99% KX156774.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 2765 2765 100% 0.0 99% KX117076.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 2765 2765 100% 0.0 99% KU963796.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 2765 2765 100% 0.0 99% KU955589.1 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 2765 2765 100% 0.0 99% KU870645.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 2765 2765 100% 0.0 99% KU922960.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 2765 2765 100% 0.0 99% KU922923.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 2765 2765 100% 0.0 99% KU820899.2 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 2765 2765 100% 0.0 99% KU729218.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 2765 2765 100% 0.0 99% KU527068.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 2765 2765 100% 0.0 99% KU647676.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 2765 2765 100% 0.0 99% KU321639.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 2761 2761 100% 0.0 99% KX766028.1 Select seq gb|KX380262.1| Zika virus isolate MS10-2016 envelope protein gene, partial cds 2760 2760 100% 0.0 99% KX380262.1 Select seq gb|KX216633.1| Zika virus isolate VS51-2016 envelope protein gene, partial cds 2760 2760 100% 0.0 99% KX216633.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 2760 2760 100% 0.0 99% KU820897.5 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 2760 2760 100% 0.0 99% KX766029.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 2760 2760 100% 0.0 99% KX447517.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 2760 2760 100% 0.0 99% KX520666.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 2760 2760 100% 0.0 99% KU758877.1 Select seq gb|KU758873.1| Zika virus isolate 18246 polyprotein gene, partial cds 2760 2760 100% 0.0 99% KU758873.1 Select seq gb|KU758869.1| Zika virus isolate 05211 polyprotein gene, partial cds 2760 2760 100% 0.0 99% KU758869.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 2760 2760 100% 0.0 99% KU937936.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 2760 2760 100% 0.0 99% KX087102.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 2760 2760 100% 0.0 99% KU940228.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 2760 2760 100% 0.0 99% KU926309.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 2760 2760 100% 0.0 99% KU497555.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 2760 2760 100% 0.0 99% KU501217.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 2760 2760 100% 0.0 99% KU501216.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 2760 2760 100% 0.0 99% KU365778.1 Select seq gb|KU312315.1| Zika virus isolate Z1106027 polyprotein gene, partial cds 2760 2760 100% 0.0 99% KU312315.1 Select seq gb|KU312314.1| Zika virus isolate Z1106031 polyprotein gene, partial cds 2760 2760 100% 0.0 99% KU312314.1 Select seq gb|KJ634273.1| Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds 2760 2760 100% 0.0 99% KJ634273.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 2754 2754 100% 0.0 99% KX702400.1 Select seq dbj|LC171327.1| Zika virus gene for polyprotein, partial cds, strain: ZIKV/Hu/Chiba/S36/2016 2754 2754 100% 0.0 99% LC171327.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 2754 2754 100% 0.0 99% KX548902.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 2754 2754 100% 0.0 99% KX377337.1 Select seq gb|KU758874.1| Zika virus isolate 20114 polyprotein gene, partial cds 2754 2754 100% 0.0 99% KU758874.1 Select seq gb|KU758868.1| Zika virus isolate 27229 polyprotein gene, partial cds 2754 2754 100% 0.0 99% KU758868.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 2754 2754 100% 0.0 99% KU820898.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 2754 2754 100% 0.0 99% KU740184.2 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 2754 2754 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 2754 2754 100% 0.0 99% KU853012.1 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 2754 2754 100% 0.0 99% KU761564.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 2754 2754 100% 0.0 99% KU707826.1 Select seq gb|KU646827.1| Zika virus isolate Si323 polyprotein gene, partial cds 2754 2754 100% 0.0 99% KU646827.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 2754 2754 100% 0.0 99% KU501215.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 2754 2754 100% 0.0 99% KU365780.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 2754 2754 100% 0.0 99% KU365779.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 2754 2754 100% 0.0 99% KU365777.1 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 2752 2752 100% 0.0 99% KU940224.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 2748 2748 100% 0.0 99% KX673530.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 2748 2748 100% 0.0 99% KX601168.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 2748 2748 100% 0.0 99% KX056898.1 Link to comment Share on other sites More sharing options...
niman Posted September 12, 2016 Author Report Share Posted September 12, 2016 LOCUS KX216633 1512 bp RNA linear VRL 07-SEP-2016 DEFINITION Zika virus isolate VS51-2016 envelope protein gene, partial cds. ACCESSION KX216633 VERSION KX216633.1 GI:1029979473 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 1512) AUTHORS Pyke,A.T. and Moore,P.R. TITLE First isolation of Zika virus in Australia from a clinical patient, imported from Tonga JOURNAL Unpublished REFERENCE 2 (bases 1 to 1512) AUTHORS Pyke,A.T. and Moore,P.R. TITLE Direct Submission JOURNAL Submitted (04-MAY-2016) Public Health Virology, Queensland Health Forensic and Scientific Services, 39 Kessels Road, Coopers Plains, QLD 4108, Australia COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1512 /organism="Zika virus" /mol_type="genomic RNA" /isolate="VS51-2016" /host="Homo sapiens" /db_xref="taxon:64320" /country="Viet Nam" /collection_date="2016" /note="genotype: Asian" CDS <1..>1512 /codon_start=1 /product="envelope protein" /protein_id="ANF28858.1" /db_xref="GI:1029979474" /translation="IRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSA" ORIGIN 1 atcaggtgca taggagtcag caatagggac tttgtggaag gtatgtcagg tgggacttgg 61 gttgatgttg tcttggaaca tggaggttgt gtcaccgtaa tggcacagga caaaccgact 121 gtcgacatag agctggttac aacaacagtc agcaacatgg cggaggtaag atcctactgc 181 tatgaggcat caatatcgga catggcttcg gacagccgct gcccaacaca aggtgaagcc 241 taccttgaca agcaatcaga cactcaatat gtctgcaaaa gaacgttagt ggacagaggc 301 tggggaaatg gatgtggact ttttggcaaa gggagcctgg tgacatgcgc taagtttgca 361 tgctccaaga aaatgaccgg gaagagcatc cagccagaga atctggagta ccggataatg 421 ctgtcagttc atggctccca gcacagtggg atgatcgtta atgacacagg acatgaaact 481 gatgagaata gagcgaaggt tgagataacg cccaattcac caagagccga agccaccctg 541 gggggttttg gaagcctagg gcttgattgt gaaccgagga caggccttga tttttcagat 601 ttgtattact tgactatgaa taacaagcac tggttggttc acaaggagtg gttccacgac 661 attccattac cttggcacgc tggggcagac accggaactc cacactggaa caacaaagaa 721 gcactggtag agttcaagga cgcacatgcc aaaaggcaaa ctgtcgtggt tctagggagt 781 caggaaggag cagttcacac ggcccttgct ggagctctgg aggctgagat ggatggtgca 841 aagggaaggc tgtcctctgg ccacttgaaa tgtcgcctga aaatggataa acttagattg 901 aagggcgtgt catactcctt gtgtaccgca gcgttcacat tcaccaagat cccggctgaa 961 acactgcacg ggacagtcac agtggaggta cagtacgcag ggacagatgg accttgcaag 1021 gttccagctc agatggcggt ggacatgcaa actctgaccc cagttgggag gttgataacc 1081 gctaaccccg taatcactga aagcactgag aactctaaga tgatgctgga acttgatcca 1141 ccatttgggg actcttacat tgtcatagga gtcggggaga agaagatcac ccaccactgg 1201 cacaggagtg gcagcaccat tggaaaagca tttgaagcca ctgtgagagg tgccaagaga 1261 atggcagtct tgggagacac agcctgggac tttggatcag ttggaggcgc tctcaactca 1321 ttgggcaagg gcatccatca aatttttgga gcagctttca aatcattgtt tggaggaatg 1381 tcctggttct cacaaattct cattggaacg ttgctgatgt ggttgggtct gaacacaaag 1441 aacggatcta tttcccttat gtgcttggcc ttagggggag tgttgatctt cttatccaca 1501 gccgtctctg ct Link to comment Share on other sites More sharing options...
niman Posted September 12, 2016 Author Report Share Posted September 12, 2016 Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KX216633.1| Zika virus isolate VS51-2016 envelope protein gene, partial cds 2793 2793 100% 0.0 100% KX216633.1 Select seq gb|KX447521.1| Zika virus isolate 1_0080_PF polyprotein gene, partial cds 2771 2771 100% 0.0 99% KX447521.1 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 2771 2771 100% 0.0 99% KX447509.1 Select seq gb|KX216635.1| Zika virus isolate TS17-2016 envelope protein gene, partial cds 2765 2765 100% 0.0 99% KX216635.1 Select seq gb|KX216634.1| Zika virus isolate TS14-2016 envelope protein gene, partial cds 2765 2765 100% 0.0 99% KX216634.1 Select seq gb|KX806557.1| Zika virus isolate TS17-2016, complete genome 2765 2765 100% 0.0 99% KX806557.1 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 2765 2765 100% 0.0 99% KJ776791.2 Select seq gb|KX447520.1| Zika virus isolate 1_0016_PF polyprotein gene, partial cds 2765 2765 100% 0.0 99% KX447520.1 Select seq gb|KX447519.1| Zika virus isolate 1_0199_PF polyprotein gene, partial cds 2765 2765 100% 0.0 99% KX447519.1 Select seq gb|KX447518.1| Zika virus isolate 1_0117_PF polyprotein gene, partial cds 2765 2765 100% 0.0 99% KX447518.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 2765 2765 100% 0.0 99% KX447516.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 2765 2765 100% 0.0 99% KX447515.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 2765 2765 100% 0.0 99% KX447513.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 2765 2765 100% 0.0 99% KX447510.1 Select seq gb|KX576684.1| Zika virus vector pZIKV-ICD, complete sequence 2765 2765 100% 0.0 99% KX576684.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 2765 2765 100% 0.0 99% KX369547.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 2765 2765 100% 0.0 99% KX280026.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 2765 2765 100% 0.0 99% KX262887.1 Select seq gb|KX216638.1| Zika virus isolate ESS23-2015 envelope protein gene, partial cds 2760 2760 100% 0.0 99% KX216638.1 Select seq gb|KX216637.1| Zika virus isolate GS29-2016 envelope protein gene, partial cds 2760 2760 100% 0.0 99% KX216637.1 Select seq gb|KX216632.1| Zika virus isolate SIS58-2015 envelope protein gene, partial cds 2760 2760 100% 0.0 99% KX216632.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 2760 2760 100% 0.0 99% KX694534.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 2760 2760 100% 0.0 99% KX447514.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 2760 2760 100% 0.0 99% KX447511.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 2760 2760 100% 0.0 99% KX446951.1 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 2760 2760 100% 0.0 99% KX247632.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 2760 2760 100% 0.0 99% KX051563.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 2760 2760 100% 0.0 99% KU509998.3 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 2760 2760 100% 0.0 99% KU991811.1 Select seq gb|KU646828.1| Zika virus isolate Si322 polyprotein gene, partial cds 2760 2760 100% 0.0 99% KU646828.1 Select seq gb|KX380263.1| Zika virus isolate FS92-2016 envelope protein gene, partial cds 2754 2754 100% 0.0 99% KX380263.1 Select seq gb|KX216640.1| Zika virus isolate CKS63-2014 envelope protein gene, partial cds 2754 2754 100% 0.0 99% KX216640.1 Select seq gb|KX216636.1| Zika virus isolate SS27-2016 envelope protein gene, partial cds 2754 2754 100% 0.0 99% KX216636.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 2754 2754 100% 0.0 99% KX197205.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 2754 2754 100% 0.0 99% KX447512.1 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 2754 2754 100% 0.0 99% KX266255.1 Select seq dbj|LC171327.1| Zika virus gene for polyprotein, partial cds, strain: ZIKV/Hu/Chiba/S36/2016 2754 2754 100% 0.0 99% LC171327.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 2754 2754 100% 0.0 99% KX446950.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 2754 2754 100% 0.0 99% KU866423.2 Select seq gb|KU758871.1| Zika virus isolate 17170 polyprotein gene, partial cds 2754 2754 100% 0.0 99% KU758871.1 Select seq gb|KU758870.1| Zika virus isolate 17160 polyprotein gene, partial cds 2754 2754 100% 0.0 99% KU758870.1 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 2754 2754 100% 0.0 99% KX253996.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 2754 2754 100% 0.0 99% KX247646.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 2754 2754 100% 0.0 99% KX198135.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 2754 2754 100% 0.0 99% KX197192.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 2754 2754 100% 0.0 99% KX185891.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 2754 2754 100% 0.0 99% KX156776.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 2754 2754 100% 0.0 99% KX156775.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 2754 2754 100% 0.0 99% KX156774.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 2754 2754 100% 0.0 99% KX117076.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 2754 2754 100% 0.0 99% KU963796.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 2754 2754 100% 0.0 99% KU955589.1 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 2754 2754 100% 0.0 99% KU870645.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 2754 2754 100% 0.0 99% KU922960.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 2754 2754 100% 0.0 99% KU922923.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 2754 2754 100% 0.0 99% KU820899.2 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 2754 2754 100% 0.0 99% KU729218.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 2754 2754 100% 0.0 99% KU527068.1 Select seq gb|KU646827.1| Zika virus isolate Si323 polyprotein gene, partial cds 2754 2754 100% 0.0 99% KU646827.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 2754 2754 100% 0.0 99% KU647676.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 2754 2754 100% 0.0 99% KU321639.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 2750 2750 100% 0.0 99% KX766028.1 Select seq gb|KX380262.1| Zika virus isolate MS10-2016 envelope protein gene, partial cds 2748 2748 100% 0.0 99% KX380262.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 2748 2748 100% 0.0 99% KU820897.5 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 2748 2748 100% 0.0 99% KX766029.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 2748 2748 100% 0.0 99% KX447517.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 2748 2748 100% 0.0 99% KX520666.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 2748 2748 100% 0.0 99% KU758877.1 Select seq gb|KU758873.1| Zika virus isolate 18246 polyprotein gene, partial cds 2748 2748 100% 0.0 99% KU758873.1 Select seq gb|KU758869.1| Zika virus isolate 05211 polyprotein gene, partial cds 2748 2748 100% 0.0 99% KU758869.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 2748 2748 100% 0.0 99% KU937936.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 2748 2748 100% 0.0 99% KX087102.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 2748 2748 100% 0.0 99% KU940228.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 2748 2748 100% 0.0 99% KU926309.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 2748 2748 100% 0.0 99% KU497555.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 2748 2748 100% 0.0 99% KU501217.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 2748 2748 100% 0.0 99% KU501216.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 2748 2748 100% 0.0 99% KU365778.1 Select seq gb|KU312315.1| Zika virus isolate Z1106027 polyprotein gene, partial cds 2748 2748 100% 0.0 99% KU312315.1 Select seq gb|KU312314.1| Zika virus isolate Z1106031 polyprotein gene, partial cds 2748 2748 100% 0.0 99% KU312314.1 Select seq gb|KJ634273.1| Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds 2748 2748 100% 0.0 99% KJ634273.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 2743 2743 100% 0.0 99% KX702400.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 2743 2743 100% 0.0 99% KX548902.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 2743 2743 100% 0.0 99% KX377337.1 Select seq gb|KU758874.1| Zika virus isolate 20114 polyprotein gene, partial cds 2743 2743 100% 0.0 99% KU758874.1 Select seq gb|KU758868.1| Zika virus isolate 27229 polyprotein gene, partial cds 2743 2743 100% 0.0 99% KU758868.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 2743 2743 100% 0.0 99% KU820898.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 2743 2743 100% 0.0 99% KU740184.2 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 2743 2743 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 2743 2743 100% 0.0 99% KU853012.1 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 2743 2743 100% 0.0 99% KU761564.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 2743 2743 100% 0.0 99% KU707826.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 2743 2743 100% 0.0 99% KU501215.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 2743 2743 100% 0.0 99% KU365780.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 2743 2743 100% 0.0 99% KU365779.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 2743 2743 100% 0.0 99% KU365777.1 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 2741 2741 100% 0.0 99% KU940224.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 2737 2737 100% 0.0 99% KX673530.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 2737 2737 100% 0.0 99% KX601168.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 2737 2737 100% 0.0 99% KX056898.1 Link to comment Share on other sites More sharing options...
niman Posted September 12, 2016 Author Report Share Posted September 12, 2016 LOCUS KX216636 1512 bp RNA linear VRL 07-SEP-2016 DEFINITION Zika virus isolate SS27-2016 envelope protein gene, partial cds. ACCESSION KX216636 VERSION KX216636.1 GI:1029979479 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 1512) AUTHORS Pyke,A.T. and Moore,P.R. TITLE First isolation of Zika virus in Australia from a clinical patient, imported from Tonga JOURNAL Unpublished REFERENCE 2 (bases 1 to 1512) AUTHORS Pyke,A.T. and Moore,P.R. TITLE Direct Submission JOURNAL Submitted (04-MAY-2016) Public Health Virology, Queensland Health Forensic and Scientific Services, 39 Kessels Road, Coopers Plains, QLD 4108, Australia COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1512 /organism="Zika virus" /mol_type="genomic RNA" /isolate="SS27-2016" /host="Homo sapiens" /db_xref="taxon:64320" /country="Samoa" /collection_date="2016" /note="genotype: Asian" CDS <1..>1512 /codon_start=1 /product="envelope protein" /protein_id="ANF28861.1" /db_xref="GI:1029979480" /translation="IRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGARRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSA" ORIGIN 1 atcaggtgca taggagtcag caatagggac tttgtggaag gtatgtcagg tgggacttgg 61 gttgatgttg tcttggaaca tgggggttgt gtcaccgtaa tggcacagga caaaccgact 121 gtcgacatag agctggttac aacaacagtc agcaacatgg cggaggtaag atcctactgc 181 tatgaggcat caatatcgga catggcttcg gacagccgct gcccaacaca aggtgaagcc 241 taccttgaca agcaatcaga cactcaatat gtctgcaaaa gaacgttagt ggacagaggc 301 tggggaaatg gatgtggact ttttggcaaa gggagcctgg tgacatgcgc taagtttgca 361 tgctccaaga aaatgaccgg gaagagcatc cagccagaga atctggagta ccggataatg 421 ctgtcagttc atggctccca gcacagtggg atgatcgtta atgacacagg acatgaaact 481 gatgagaata gagcgaaggt tgagataacg cccaattcac caagagccga agccaccctg 541 gggggttttg gaagcctagg acttgattgt gaaccgagga caggccttga cttttcagat 601 ttgtattact tgactatgaa taacaagcac tggttggttc acaaggagtg gttccacgac 661 attccattac cttggcacgc tggggcagac accggaactc cacactggaa caacaaagaa 721 gcactggtag agttcaagga cgcacatgcc aaaaggcaaa ctgtcgtggt tctagggagt 781 caagaaggag cagttcacac ggcccttgct ggagctctgg aggctgagat ggatggtgca 841 aagggaaggc tgtcctctgg ccacttgaaa tgtcgcctga aaatggataa acttagattg 901 aagggcgtgt catactcctt gtgtaccgca gcgttcacat tcaccaagat cccggctgaa 961 acactgcacg ggacagtcac agtggaggta cagtacgcag ggacagatgg accttgcaag 1021 gttccagctc agatggcggt ggacatgcaa actctgaccc cagttgggag gttgataacc 1081 gctaaccccg taatcactga aagcactgag aactccaaga tgatgctgga acttgatcca 1141 ccatttgggg actcttacat tgtcatagga gtcggggaga agaagatcac ccaccactgg 1201 cacaggagtg gcagcaccat tggaaaagca tttgaagcca ctgtgagagg tgccaggaga 1261 atggcagtct tgggagacac agcctgggac tttggatcag ttggaggcgc tctcaactca 1321 ttgggcaagg gcatccatca aatttttgga gcagctttca aatcattgtt tggaggaatg 1381 tcctggttct cacaaattct cattggaacg ttgctgatgt ggttgggtct gaacacaaag 1441 aatggatcta tttcccttat gtgcttggcc ttagggggag tgttgatctt cttatccaca 1501 gccgtctctg ct Link to comment Share on other sites More sharing options...
niman Posted September 12, 2016 Author Report Share Posted September 12, 2016 Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KX216636.1| Zika virus isolate SS27-2016 envelope protein gene, partial cds 2793 2793 100% 0.0 100% KX216636.1 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 2782 2782 100% 0.0 99% KX266255.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 2782 2782 100% 0.0 99% KU866423.2 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 2782 2782 100% 0.0 99% KX253996.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 2782 2782 100% 0.0 99% KX185891.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 2782 2782 100% 0.0 99% KX117076.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 2782 2782 100% 0.0 99% KU963796.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 2782 2782 100% 0.0 99% KU955589.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 2782 2782 100% 0.0 99% KU820899.2 Select seq gb|KX447521.1| Zika virus isolate 1_0080_PF polyprotein gene, partial cds 2776 2776 100% 0.0 99% KX447521.1 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 2776 2776 100% 0.0 99% KX447509.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 2776 2776 100% 0.0 99% KU991811.1 Select seq gb|KX216635.1| Zika virus isolate TS17-2016 envelope protein gene, partial cds 2771 2771 100% 0.0 99% KX216635.1 Select seq gb|KX216634.1| Zika virus isolate TS14-2016 envelope protein gene, partial cds 2771 2771 100% 0.0 99% KX216634.1 Select seq gb|KX806557.1| Zika virus isolate TS17-2016, complete genome 2771 2771 100% 0.0 99% KX806557.1 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 2771 2771 100% 0.0 99% KJ776791.2 Select seq gb|KX447520.1| Zika virus isolate 1_0016_PF polyprotein gene, partial cds 2771 2771 100% 0.0 99% KX447520.1 Select seq gb|KX447519.1| Zika virus isolate 1_0199_PF polyprotein gene, partial cds 2771 2771 100% 0.0 99% KX447519.1 Select seq gb|KX447518.1| Zika virus isolate 1_0117_PF polyprotein gene, partial cds 2771 2771 100% 0.0 99% KX447518.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 2771 2771 100% 0.0 99% KX447516.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 2771 2771 100% 0.0 99% KX447515.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 2771 2771 100% 0.0 99% KX447513.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 2771 2771 100% 0.0 99% KX447510.1 Select seq gb|KX576684.1| Zika virus vector pZIKV-ICD, complete sequence 2771 2771 100% 0.0 99% KX576684.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 2771 2771 100% 0.0 99% KX369547.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 2771 2771 100% 0.0 99% KX280026.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 2771 2771 100% 0.0 99% KX262887.1 Select seq gb|KX216638.1| Zika virus isolate ESS23-2015 envelope protein gene, partial cds 2765 2765 100% 0.0 99% KX216638.1 Select seq gb|KX216637.1| Zika virus isolate GS29-2016 envelope protein gene, partial cds 2765 2765 100% 0.0 99% KX216637.1 Select seq gb|KX216632.1| Zika virus isolate SIS58-2015 envelope protein gene, partial cds 2765 2765 100% 0.0 99% KX216632.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 2765 2765 100% 0.0 99% KX694534.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 2765 2765 100% 0.0 99% KX447514.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 2765 2765 100% 0.0 99% KX447511.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 2765 2765 100% 0.0 99% KX446951.1 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 2765 2765 100% 0.0 99% KX247632.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 2765 2765 100% 0.0 99% KX051563.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 2765 2765 100% 0.0 99% KU509998.3 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 2765 2765 100% 0.0 99% KU497555.1 Select seq gb|KU646828.1| Zika virus isolate Si322 polyprotein gene, partial cds 2765 2765 100% 0.0 99% KU646828.1 Select seq gb|KX380263.1| Zika virus isolate FS92-2016 envelope protein gene, partial cds 2760 2760 100% 0.0 99% KX380263.1 Select seq gb|KX216640.1| Zika virus isolate CKS63-2014 envelope protein gene, partial cds 2760 2760 100% 0.0 99% KX216640.1 Select seq gb|KX216639.1| Zika virus isolate SS57-2016 envelope protein gene, partial cds 2760 2760 100% 0.0 99% KX216639.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 2760 2760 100% 0.0 99% KX197205.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 2760 2760 100% 0.0 99% KX447512.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 2760 2760 100% 0.0 99% KX446950.1 Select seq gb|KU758871.1| Zika virus isolate 17170 polyprotein gene, partial cds 2760 2760 100% 0.0 99% KU758871.1 Select seq gb|KU758870.1| Zika virus isolate 17160 polyprotein gene, partial cds 2760 2760 100% 0.0 99% KU758870.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 2760 2760 100% 0.0 99% KX247646.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 2760 2760 100% 0.0 99% KX198135.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 2760 2760 100% 0.0 99% KX197192.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 2760 2760 100% 0.0 99% KX156776.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 2760 2760 100% 0.0 99% KX156775.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 2760 2760 100% 0.0 99% KX156774.1 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 2760 2760 100% 0.0 99% KU870645.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 2760 2760 100% 0.0 99% KU922960.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 2760 2760 100% 0.0 99% KU922923.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 2760 2760 100% 0.0 99% KU729218.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 2760 2760 100% 0.0 99% KU527068.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 2760 2760 100% 0.0 99% KU647676.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 2760 2760 100% 0.0 99% KU321639.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 2756 2756 100% 0.0 99% KX766028.1 Select seq gb|KX380262.1| Zika virus isolate MS10-2016 envelope protein gene, partial cds 2754 2754 100% 0.0 99% KX380262.1 Select seq gb|KX216633.1| Zika virus isolate VS51-2016 envelope protein gene, partial cds 2754 2754 100% 0.0 99% KX216633.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 2754 2754 100% 0.0 99% KU820897.5 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 2754 2754 100% 0.0 99% KX766029.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 2754 2754 100% 0.0 99% KX447517.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 2754 2754 100% 0.0 99% KX520666.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 2754 2754 100% 0.0 99% KU758877.1 Select seq gb|KU758873.1| Zika virus isolate 18246 polyprotein gene, partial cds 2754 2754 100% 0.0 99% KU758873.1 Select seq gb|KU758869.1| Zika virus isolate 05211 polyprotein gene, partial cds 2754 2754 100% 0.0 99% KU758869.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 2754 2754 100% 0.0 99% KU937936.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 2754 2754 100% 0.0 99% KX087102.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 2754 2754 100% 0.0 99% KU940228.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 2754 2754 100% 0.0 99% KU926309.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 2754 2754 100% 0.0 99% KU501217.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 2754 2754 100% 0.0 99% KU501216.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 2754 2754 100% 0.0 99% KU365778.1 Select seq gb|KU312315.1| Zika virus isolate Z1106027 polyprotein gene, partial cds 2754 2754 100% 0.0 99% KU312315.1 Select seq gb|KU312314.1| Zika virus isolate Z1106031 polyprotein gene, partial cds 2754 2754 100% 0.0 99% KU312314.1 Select seq gb|KJ634273.1| Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds 2754 2754 100% 0.0 99% KJ634273.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 2748 2748 100% 0.0 99% KX702400.1 Select seq dbj|LC171327.1| Zika virus gene for polyprotein, partial cds, strain: ZIKV/Hu/Chiba/S36/2016 2748 2748 100% 0.0 99% LC171327.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 2748 2748 100% 0.0 99% KX548902.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 2748 2748 100% 0.0 99% KX377337.1 Select seq gb|KU758874.1| Zika virus isolate 20114 polyprotein gene, partial cds 2748 2748 100% 0.0 99% KU758874.1 Select seq gb|KU758868.1| Zika virus isolate 27229 polyprotein gene, partial cds 2748 2748 100% 0.0 99% KU758868.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 2748 2748 100% 0.0 99% KU820898.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 2748 2748 100% 0.0 99% KU740184.2 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 2748 2748 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 2748 2748 100% 0.0 99% KU853012.1 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 2748 2748 100% 0.0 99% KU761564.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 2748 2748 100% 0.0 99% KU707826.1 Select seq gb|KU646827.1| Zika virus isolate Si323 polyprotein gene, partial cds 2748 2748 100% 0.0 99% KU646827.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 2748 2748 100% 0.0 99% KU501215.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 2748 2748 100% 0.0 99% KU365780.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 2748 2748 100% 0.0 99% KU365779.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 2748 2748 100% 0.0 99% KU365777.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 2743 2743 100% 0.0 99% KX673530.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 2743 2743 100% 0.0 99% KX601168.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 2743 2743 100% 0.0 99% KX056898.1 Link to comment Share on other sites More sharing options...
niman Posted September 12, 2016 Author Report Share Posted September 12, 2016 LOCUS KX216637 1512 bp RNA linear VRL 07-SEP-2016 DEFINITION Zika virus isolate GS29-2016 envelope protein gene, partial cds. ACCESSION KX216637 VERSION KX216637.1 GI:1029979481 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 1512) AUTHORS Moore,P.R. and Pyke,A.T. TITLE First isolation of Zika virus in Australia from a clinical patient, imported from Tonga JOURNAL Unpublished REFERENCE 2 (bases 1 to 1512) AUTHORS Moore,P.R. and Pyke,A.T. TITLE Direct Submission JOURNAL Submitted (04-MAY-2016) Public Health Virology, Queensland Health Forensic and Scientific Services, 39 Kessels Road, Coopers Plains, QLD 4108, Australia COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1512 /organism="Zika virus" /mol_type="genomic RNA" /isolate="GS29-2016" /host="Homo sapiens" /db_xref="taxon:64320" /country="Guyana" /collection_date="2016" /note="genotype: Asian" CDS <1..>1512 /codon_start=1 /product="envelope protein" /protein_id="ANF28862.1" /db_xref="GI:1029979482" /translation="IRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLIWLGLNTKNGSISLMCLALGGVLIFLSTAVSA" ORIGIN 1 atcaggtgca taggagtcag caatagggac tttgtggaag gtatgtcagg tgggacttgg 61 gttgatgttg tcttggaaca tggaggttgt gtcaccgtaa tggcacagga caaaccgact 121 gtcgacatag agctggttac aacaacagtc agcaacatgg cggaggtaag atcctactgc 181 tatgaggcat caatatcaga catggcttcg gacagccgct gcccaacaca aggtgaagcc 241 taccttgaca agcaatcaga cactcaatat gtctgcaaaa gaacgttagt ggacagaggc 301 tggggaaatg gatgtggact ttttggcaaa gggagcctgg tgacatgcgc taagtttgca 361 tgctccaaga aaatgaccgg gaagagcatc cagccagaga atctggagta ccggataatg 421 ctgtcagttc atggctccca gcacagtggg atgatcgtta atgacacagg acatgaaact 481 gatgagaata gagcgaaggt tgagataacg cccaattcac caagagccga agccaccctg 541 gggggttttg gaagcctagg acttgattgt gaaccgagga caggccttga cttttcagat 601 ttgtattact tgactatgaa taacaagcac tggttggttc acaaggagtg gttccacgac 661 attccattac cttggcacgc tggggcagac accggaactc cacactggaa caacaaagaa 721 gcactggtag agttcaagga cgcacatgcc aaaaggcaaa ctgtcgtggt tctagggagt 781 caagaaggag cagttcacac ggcccttgct ggagctctgg aggctgagat ggatggtgca 841 aagggaaggc tgtcctctgg ccacttgaaa tgtcgcctga aaatggataa acttagattg 901 aagggcgtgt catactcctt gtgtaccgca gcgttcacat tcaccaagat cccggctgaa 961 acactgcacg ggacagtcac agtggaggta cagtacgcag ggacagatgg accttgcaag 1021 gttccagctc agatggcggt ggacatgcaa actctgaccc cagttgggag gttgataacc 1081 gctaaccccg taatcactga aagcactgag aactctaaga tgatgctgga acttgatcca 1141 ccatttgggg actcttacat tgtcatagga gtcggggaga agaagatcac ccaccactgg 1201 cacaggagtg gcagcaccat tggaaaagca tttgaagcca ctgtgagagg tgccaagaga 1261 atggcagtct tgggagacac agcctgggac tttggatcag ttggaggcgc tctcaactca 1321 ttgggcaagg gcatccatca aatttttgga gcagctttca aatcattgtt tggaggaatg 1381 tcctggttct cacaaattct cattggaacg ttgctgatat ggttgggtct gaacacaaag 1441 aatggatcta tttcccttat gtgcttggcc ttagggggag tgttgatctt cttatccaca 1501 gccgtctctg ct Link to comment Share on other sites More sharing options...
niman Posted September 12, 2016 Author Report Share Posted September 12, 2016 Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KX216637.1| Zika virus isolate GS29-2016 envelope protein gene, partial cds 2793 2793 100% 0.0 100% KX216637.1 Select seq gb|KX447520.1| Zika virus isolate 1_0016_PF polyprotein gene, partial cds 2787 2787 100% 0.0 99% KX447520.1 Select seq gb|KX447519.1| Zika virus isolate 1_0199_PF polyprotein gene, partial cds 2787 2787 100% 0.0 99% KX447519.1 Select seq gb|KX447518.1| Zika virus isolate 1_0117_PF polyprotein gene, partial cds 2787 2787 100% 0.0 99% KX447518.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 2787 2787 100% 0.0 99% KX447513.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 2787 2787 100% 0.0 99% KX447510.1 Select seq gb|KX576684.1| Zika virus vector pZIKV-ICD, complete sequence 2787 2787 100% 0.0 99% KX576684.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 2787 2787 100% 0.0 99% KX369547.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 2787 2787 100% 0.0 99% KX280026.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 2787 2787 100% 0.0 99% KX262887.1 Select seq gb|KX216638.1| Zika virus isolate ESS23-2015 envelope protein gene, partial cds 2782 2782 100% 0.0 99% KX216638.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 2782 2782 100% 0.0 99% KX694534.1 Select seq gb|KX447521.1| Zika virus isolate 1_0080_PF polyprotein gene, partial cds 2782 2782 100% 0.0 99% KX447521.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 2782 2782 100% 0.0 99% KX447511.1 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 2782 2782 100% 0.0 99% KX447509.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 2782 2782 100% 0.0 99% KX446951.1 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 2782 2782 100% 0.0 99% KX247632.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 2782 2782 100% 0.0 99% KX051563.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 2782 2782 100% 0.0 99% KU509998.3 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 2782 2782 100% 0.0 99% KU991811.1 Select seq gb|KU646828.1| Zika virus isolate Si322 polyprotein gene, partial cds 2782 2782 100% 0.0 99% KU646828.1 Select seq gb|KX216635.1| Zika virus isolate TS17-2016 envelope protein gene, partial cds 2776 2776 100% 0.0 99% KX216635.1 Select seq gb|KX216634.1| Zika virus isolate TS14-2016 envelope protein gene, partial cds 2776 2776 100% 0.0 99% KX216634.1 Select seq gb|KX806557.1| Zika virus isolate TS17-2016, complete genome 2776 2776 100% 0.0 99% KX806557.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 2776 2776 100% 0.0 99% KX197205.1 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 2776 2776 100% 0.0 99% KJ776791.2 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 2776 2776 100% 0.0 99% KX447516.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 2776 2776 100% 0.0 99% KX447515.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 2776 2776 100% 0.0 99% KX447512.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 2776 2776 100% 0.0 99% KX446950.1 Select seq gb|KU758871.1| Zika virus isolate 17170 polyprotein gene, partial cds 2776 2776 100% 0.0 99% KU758871.1 Select seq gb|KU758870.1| Zika virus isolate 17160 polyprotein gene, partial cds 2776 2776 100% 0.0 99% KU758870.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 2776 2776 100% 0.0 99% KX247646.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 2776 2776 100% 0.0 99% KX198135.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 2776 2776 100% 0.0 99% KX197192.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 2776 2776 100% 0.0 99% KX156776.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 2776 2776 100% 0.0 99% KX156775.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 2776 2776 100% 0.0 99% KX156774.1 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 2776 2776 100% 0.0 99% KU870645.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 2776 2776 100% 0.0 99% KU922960.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 2776 2776 100% 0.0 99% KU922923.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 2776 2776 100% 0.0 99% KU729218.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 2776 2776 100% 0.0 99% KU527068.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 2776 2776 100% 0.0 99% KU647676.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 2776 2776 100% 0.0 99% KU321639.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 2772 2772 100% 0.0 99% KX766028.1 Select seq gb|KX380262.1| Zika virus isolate MS10-2016 envelope protein gene, partial cds 2771 2771 100% 0.0 99% KX380262.1 Select seq gb|KX216632.1| Zika virus isolate SIS58-2015 envelope protein gene, partial cds 2771 2771 100% 0.0 99% KX216632.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 2771 2771 100% 0.0 99% KU820897.5 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 2771 2771 100% 0.0 99% KX766029.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 2771 2771 100% 0.0 99% KX447514.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 2771 2771 100% 0.0 99% KX520666.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 2771 2771 100% 0.0 99% KU758877.1 Select seq gb|KU758873.1| Zika virus isolate 18246 polyprotein gene, partial cds 2771 2771 100% 0.0 99% KU758873.1 Select seq gb|KU758869.1| Zika virus isolate 05211 polyprotein gene, partial cds 2771 2771 100% 0.0 99% KU758869.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 2771 2771 100% 0.0 99% KU937936.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 2771 2771 100% 0.0 99% KX087102.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 2771 2771 100% 0.0 99% KU940228.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 2771 2771 100% 0.0 99% KU926309.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 2771 2771 100% 0.0 99% KU497555.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 2771 2771 100% 0.0 99% KU501217.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 2771 2771 100% 0.0 99% KU501216.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 2771 2771 100% 0.0 99% KU365778.1 Select seq gb|KU312315.1| Zika virus isolate Z1106027 polyprotein gene, partial cds 2771 2771 100% 0.0 99% KU312315.1 Select seq gb|KU312314.1| Zika virus isolate Z1106031 polyprotein gene, partial cds 2771 2771 100% 0.0 99% KU312314.1 Select seq gb|KX380263.1| Zika virus isolate FS92-2016 envelope protein gene, partial cds 2765 2765 100% 0.0 99% KX380263.1 Select seq gb|KX216640.1| Zika virus isolate CKS63-2014 envelope protein gene, partial cds 2765 2765 100% 0.0 99% KX216640.1 Select seq gb|KX216636.1| Zika virus isolate SS27-2016 envelope protein gene, partial cds 2765 2765 100% 0.0 99% KX216636.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 2765 2765 100% 0.0 99% KX702400.1 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 2765 2765 100% 0.0 99% KX266255.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 2765 2765 100% 0.0 99% KX548902.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 2765 2765 100% 0.0 99% KX377337.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 2765 2765 100% 0.0 99% KU866423.2 Select seq gb|KU758874.1| Zika virus isolate 20114 polyprotein gene, partial cds 2765 2765 100% 0.0 99% KU758874.1 Select seq gb|KU758868.1| Zika virus isolate 27229 polyprotein gene, partial cds 2765 2765 100% 0.0 99% KU758868.1 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 2765 2765 100% 0.0 99% KX253996.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 2765 2765 100% 0.0 99% KX185891.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 2765 2765 100% 0.0 99% KX117076.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 2765 2765 100% 0.0 99% KU963796.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 2765 2765 100% 0.0 99% KU955589.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 2765 2765 100% 0.0 99% KU820898.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 2765 2765 100% 0.0 99% KU740184.2 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 2765 2765 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 2765 2765 100% 0.0 99% KU853012.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 2765 2765 100% 0.0 99% KU820899.2 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 2765 2765 100% 0.0 99% KU761564.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 2765 2765 100% 0.0 99% KU707826.1 Select seq gb|KU646827.1| Zika virus isolate Si323 polyprotein gene, partial cds 2765 2765 100% 0.0 99% KU646827.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 2765 2765 100% 0.0 99% KU501215.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 2765 2765 100% 0.0 99% KU365780.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 2765 2765 100% 0.0 99% KU365779.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 2765 2765 100% 0.0 99% KU365777.1 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 2763 2763 100% 0.0 99% KU940224.1 Select seq gb|KX216633.1| Zika virus isolate VS51-2016 envelope protein gene, partial cds 2760 2760 100% 0.0 99% KX216633.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 2760 2760 100% 0.0 99% KX673530.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 2760 2760 100% 0.0 99% KX447517.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 2760 2760 100% 0.0 99% KX601168.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 2760 2760 100% 0.0 99% KX056898.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 2760 2760 100% 0.0 99% KU955590.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 2760 2760 100% 0.0 99% KU729217.2 Link to comment Share on other sites More sharing options...
niman Posted September 12, 2016 Author Report Share Posted September 12, 2016 LOCUS KX216638 1512 bp RNA linear VRL 07-SEP-2016 DEFINITION Zika virus isolate ESS23-2015 envelope protein gene, partial cds. ACCESSION KX216638 VERSION KX216638.1 GI:1029979483 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 1512) AUTHORS Moore,P.R. and Pyke,A.T. TITLE First isolation of Zika virus in Australia from a clinical patient, imported from Tonga JOURNAL Unpublished REFERENCE 2 (bases 1 to 1512) AUTHORS Moore,P.R. and Pyke,A.T. TITLE Direct Submission JOURNAL Submitted (04-MAY-2016) Public Health Virology, Queensland Health Forensic and Scientific Services, 39 Kessels Road, Coopers Plains, QLD 4108, Australia COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1512 /organism="Zika virus" /mol_type="genomic RNA" /isolate="ESS23-2015" /host="Homo sapiens" /db_xref="taxon:64320" /country="El Salvador" /collection_date="2015" /note="genotype: Asian" CDS <1..>1512 /codon_start=1 /product="envelope protein" /protein_id="ANF28863.1" /db_xref="GI:1029979484" /translation="IRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSA" ORIGIN 1 atcaggtgca taggagtcag caatagggac tttgtggaag gtatgtcagg tgggacttgg 61 gtcgatgttg tcttggaaca tggaggttgt gtcaccgtaa tggcacagga caaaccgact 121 gtcgacatag agctggttac aacaacagtc agcaacatgg cggaggtaag atcctactgc 181 tatgaggcat caatatcaga catggcttcg gacagccgct gcccaacaca aggtgaagcc 241 taccttgaca agcaatcaga cactcaatat gtctgcaaaa gaacgttagt ggacagaggc 301 tggggaaatg gatgtggact ttttggcaaa gggagcctgg tgacatgcgc taagtttgca 361 tgctccaaga aaatgaccgg gaagagcatc cagccagaga atctggagta ccggataatg 421 ctgtcagttc atggctccca gcacagtggg atgatcgtta atgacacagg acatgaaact 481 gatgagaata gagcgaaggt tgagataacg cccaattcac caagagccga agccaccctg 541 gggggttttg gaagcctagg acttgattgt gaaccgagga caggccttga cttttcagat 601 ttgtattact tgactatgaa taacaagcac tggttggttc acaaggagtg gttccacgac 661 attccattac cttggcacgc tggggcagac accggaactc cacactggaa caacaaagaa 721 gcactggtag agttcaagga cgcacatgcc aaaaggcaaa ctgtcgtggt tctagggagt 781 caagaaggag cagttcacac ggcccttgct ggagctctgg aggctgagat ggatggtgca 841 aagggaaggc tgtcctctgg ccacttgaaa tgtcgcctga aaatggataa acttagattg 901 aagggcgtgt catactcctt gtgtaccgca gcgttcacat tcaccaagat cccggctgaa 961 acactgcacg ggacagtcac agtggaggta cagtacgcag ggacagatgg accttgcaag 1021 gttccagctc agatggcggt ggacatgcaa actctgaccc cagttgggag gttgataacc 1081 gctaaccccg taatcactga aagcactgag aactctaaga tgatgctgga acttgatcca 1141 ccatttgggg actcttacat tgtcatagga gtcggggaga agaagatcac ccaccactgg 1201 cacaggagtg gcagcaccat tggaaaagca tttgaagcca ctgtgagagg tgccaagaga 1261 atggcagtct tgggagacac agcctgggac tttggatcag ttggaggcgc tctcaactca 1321 ttgggcaagg gcatccatca aatttttgga gcagctttca aatcattgtt tggaggaatg 1381 tcctggttct cacaaattct cattggaacg ttgctgatgt ggttgggtct gaacacaaag 1441 aatggatcta tttcccttat gtgcttggcc ttagggggag tgttgatctt cttatccaca 1501 gccgtctctg ct Link to comment Share on other sites More sharing options...
niman Posted September 12, 2016 Author Report Share Posted September 12, 2016 Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KX216638.1| Zika virus isolate ESS23-2015 envelope protein gene, partial cds 2793 2793 100% 0.0 100% KX216638.1 Select seq gb|KX447520.1| Zika virus isolate 1_0016_PF polyprotein gene, partial cds 2787 2787 100% 0.0 99% KX447520.1 Select seq gb|KX447519.1| Zika virus isolate 1_0199_PF polyprotein gene, partial cds 2787 2787 100% 0.0 99% KX447519.1 Select seq gb|KX447518.1| Zika virus isolate 1_0117_PF polyprotein gene, partial cds 2787 2787 100% 0.0 99% KX447518.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 2787 2787 100% 0.0 99% KX447513.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 2787 2787 100% 0.0 99% KX447510.1 Select seq gb|KX576684.1| Zika virus vector pZIKV-ICD, complete sequence 2787 2787 100% 0.0 99% KX576684.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 2787 2787 100% 0.0 99% KX369547.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 2787 2787 100% 0.0 99% KX280026.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 2787 2787 100% 0.0 99% KX262887.1 Select seq gb|KX216637.1| Zika virus isolate GS29-2016 envelope protein gene, partial cds 2782 2782 100% 0.0 99% KX216637.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 2782 2782 100% 0.0 99% KX694534.1 Select seq gb|KX447521.1| Zika virus isolate 1_0080_PF polyprotein gene, partial cds 2782 2782 100% 0.0 99% KX447521.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 2782 2782 100% 0.0 99% KX447511.1 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 2782 2782 100% 0.0 99% KX447509.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 2782 2782 100% 0.0 99% KX446951.1 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 2782 2782 100% 0.0 99% KX247632.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 2782 2782 100% 0.0 99% KX051563.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 2782 2782 100% 0.0 99% KU509998.3 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 2782 2782 100% 0.0 99% KU991811.1 Select seq gb|KU646828.1| Zika virus isolate Si322 polyprotein gene, partial cds 2782 2782 100% 0.0 99% KU646828.1 Select seq gb|KX216635.1| Zika virus isolate TS17-2016 envelope protein gene, partial cds 2776 2776 100% 0.0 99% KX216635.1 Select seq gb|KX216634.1| Zika virus isolate TS14-2016 envelope protein gene, partial cds 2776 2776 100% 0.0 99% KX216634.1 Select seq gb|KX806557.1| Zika virus isolate TS17-2016, complete genome 2776 2776 100% 0.0 99% KX806557.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 2776 2776 100% 0.0 99% KX197205.1 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 2776 2776 100% 0.0 99% KJ776791.2 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 2776 2776 100% 0.0 99% KX447516.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 2776 2776 100% 0.0 99% KX447515.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 2776 2776 100% 0.0 99% KX447512.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 2776 2776 100% 0.0 99% KX446950.1 Select seq gb|KU758871.1| Zika virus isolate 17170 polyprotein gene, partial cds 2776 2776 100% 0.0 99% KU758871.1 Select seq gb|KU758870.1| Zika virus isolate 17160 polyprotein gene, partial cds 2776 2776 100% 0.0 99% KU758870.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 2776 2776 100% 0.0 99% KX247646.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 2776 2776 100% 0.0 99% KX198135.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 2776 2776 100% 0.0 99% KX197192.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 2776 2776 100% 0.0 99% KX156776.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 2776 2776 100% 0.0 99% KX156775.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 2776 2776 100% 0.0 99% KX156774.1 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 2776 2776 100% 0.0 99% KU870645.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 2776 2776 100% 0.0 99% KU922960.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 2776 2776 100% 0.0 99% KU922923.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 2776 2776 100% 0.0 99% KU729218.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 2776 2776 100% 0.0 99% KU527068.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 2776 2776 100% 0.0 99% KU647676.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 2776 2776 100% 0.0 99% KU321639.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 2772 2772 100% 0.0 99% KX766028.1 Select seq gb|KX380262.1| Zika virus isolate MS10-2016 envelope protein gene, partial cds 2771 2771 100% 0.0 99% KX380262.1 Select seq gb|KX216632.1| Zika virus isolate SIS58-2015 envelope protein gene, partial cds 2771 2771 100% 0.0 99% KX216632.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 2771 2771 100% 0.0 99% KU820897.5 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 2771 2771 100% 0.0 99% KX766029.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 2771 2771 100% 0.0 99% KX447514.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 2771 2771 100% 0.0 99% KX520666.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 2771 2771 100% 0.0 99% KU758877.1 Select seq gb|KU758873.1| Zika virus isolate 18246 polyprotein gene, partial cds 2771 2771 100% 0.0 99% KU758873.1 Select seq gb|KU758869.1| Zika virus isolate 05211 polyprotein gene, partial cds 2771 2771 100% 0.0 99% KU758869.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 2771 2771 100% 0.0 99% KU937936.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 2771 2771 100% 0.0 99% KX087102.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 2771 2771 100% 0.0 99% KX056898.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 2771 2771 100% 0.0 99% KU940228.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 2771 2771 100% 0.0 99% KU955590.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 2771 2771 100% 0.0 99% KU926309.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 2771 2771 100% 0.0 99% KU497555.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 2771 2771 100% 0.0 99% KU501217.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 2771 2771 100% 0.0 99% KU501216.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 2771 2771 100% 0.0 99% KU365778.1 Select seq gb|KU312315.1| Zika virus isolate Z1106027 polyprotein gene, partial cds 2771 2771 100% 0.0 99% KU312315.1 Select seq gb|KU312314.1| Zika virus isolate Z1106031 polyprotein gene, partial cds 2771 2771 100% 0.0 99% KU312314.1 Select seq gb|KX380263.1| Zika virus isolate FS92-2016 envelope protein gene, partial cds 2765 2765 100% 0.0 99% KX380263.1 Select seq gb|KX216640.1| Zika virus isolate CKS63-2014 envelope protein gene, partial cds 2765 2765 100% 0.0 99% KX216640.1 Select seq gb|KX216636.1| Zika virus isolate SS27-2016 envelope protein gene, partial cds 2765 2765 100% 0.0 99% KX216636.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 2765 2765 100% 0.0 99% KX702400.1 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 2765 2765 100% 0.0 99% KX266255.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 2765 2765 100% 0.0 99% KX548902.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 2765 2765 100% 0.0 99% KX377337.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 2765 2765 100% 0.0 99% KU866423.2 Select seq gb|KU758874.1| Zika virus isolate 20114 polyprotein gene, partial cds 2765 2765 100% 0.0 99% KU758874.1 Select seq gb|KU758868.1| Zika virus isolate 27229 polyprotein gene, partial cds 2765 2765 100% 0.0 99% KU758868.1 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 2765 2765 100% 0.0 99% KX253996.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 2765 2765 100% 0.0 99% KX185891.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 2765 2765 100% 0.0 99% KX117076.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 2765 2765 100% 0.0 99% KU963796.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 2765 2765 100% 0.0 99% KU955589.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 2765 2765 100% 0.0 99% KU820898.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 2765 2765 100% 0.0 99% KU740184.2 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 2765 2765 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 2765 2765 100% 0.0 99% KU853012.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 2765 2765 100% 0.0 99% KU820899.2 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 2765 2765 100% 0.0 99% KU761564.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 2765 2765 100% 0.0 99% KU707826.1 Select seq gb|KU646827.1| Zika virus isolate Si323 polyprotein gene, partial cds 2765 2765 100% 0.0 99% KU646827.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 2765 2765 100% 0.0 99% KU501215.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 2765 2765 100% 0.0 99% KU365780.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 2765 2765 100% 0.0 99% KU365779.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 2765 2765 100% 0.0 99% KU365777.1 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 2763 2763 100% 0.0 99% KU940224.1 Select seq gb|KX216633.1| Zika virus isolate VS51-2016 envelope protein gene, partial cds 2760 2760 100% 0.0 99% KX216633.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 2760 2760 100% 0.0 99% KX673530.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 2760 2760 100% 0.0 99% KX447517.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 2760 2760 100% 0.0 99% KX601168.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 2760 2760 100% 0.0 99% KU729217.2 Link to comment Share on other sites More sharing options...
niman Posted September 12, 2016 Author Report Share Posted September 12, 2016 LOCUS KX216639 1512 bp RNA linear VRL 07-SEP-2016 DEFINITION Zika virus isolate SS57-2016 envelope protein gene, partial cds. ACCESSION KX216639 VERSION KX216639.1 GI:1029979485 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 1512) AUTHORS Moore,P.R. and Pyke,A.T. TITLE First isolation of Zika virus in Australia from a clinical patient, imported from Tonga JOURNAL Unpublished REFERENCE 2 (bases 1 to 1512) AUTHORS Moore,P.R. and Pyke,A.T. TITLE Direct Submission JOURNAL Submitted (04-MAY-2016) Public Health Virology, Queensland Health Forensic and Scientific Services, 39 Kessels Road, Coopers Plains, QLD 4108, Australia COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1512 /organism="Zika virus" /mol_type="genomic RNA" /isolate="SS57-2016" /host="Homo sapiens" /db_xref="taxon:64320" /country="Samoa" /collection_date="2016" /note="genotype: Asian" CDS <1..>1512 /codon_start=1 /product="envelope protein" /protein_id="ANF28864.1" /db_xref="GI:1029979486" /translation="IRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGARRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSA" ORIGIN 1 atcaggtgca taggagtcag caatagggac tttgtggaag gtatgtcagg tgggacttgg 61 gttgatgttg tcttggaaca tggaggttgt gtcaccgtaa tggcacagga caaaccgact 121 gtcgacatag agctggttac aacaacagtc agcaacatgg cggaggtaag atcctactgc 181 tatgaggcat caatatcgga catggcttcg gacagccgct gcccaacaca aggtgaagcc 241 taccttgaca agcaatcaga cactcagtat gtctgcaaaa gaacgttagt ggacagaggc 301 tggggaaatg gatgcggact ttttggcaaa gggagcctgg tgacatgcgc taagtttgca 361 tgctccaaga aaatgaccgg gaagagcatc cagccagaga atctggagta ccggataatg 421 ctgtcagttc atggctccca gcacagtggg atgatcgtta atgacacagg acatgaaact 481 gatgagaata gagcgaaggt tgagataacg cccaattcac caagagccga agccaccctg 541 gggggttttg gaagcctagg acttgattgt gaaccgagga caggccttga cttttcagat 601 ttgtattact tgactatgaa taacaagcac tggttggttc acaaggagtg gttccatgac 661 attccattac cttggcacgc tggggcagac accggaactc cacactggaa caacaaagaa 721 gcactggtag agtttaagga cgcacatgcc aaaaggcaaa ctgtcgtggt tctagggagt 781 caagaaggag cagttcacac ggcccttgct ggagctctgg aggctgagat ggatggtgca 841 aagggaaggc tgtcctctgg ccacttgaaa tgtcgcctga aaatggataa acttagattg 901 aagggcgtgt catactcctt gtgtaccgca gcgttcacat tcaccaagat cccggctgaa 961 acactgcacg ggacagtcac agtggaggta cagtacgcag ggacagatgg accttgcaag 1021 gttccagctc agatggcggt ggacatgcaa actctgaccc cagttgggag gttgataacc 1081 gctaaccccg taatcactga aagcactgag aactccaaga tgatgctgga acttgatcca 1141 ccatttgggg actcttacat tgtcatagga gtcggggaga agaagatcac ccaccactgg 1201 cacaggagtg gcagcaccat tggaaaagca tttgaagcca ctgtgagagg tgccaggaga 1261 atggcagtct tgggagacac agcctgggac tttggatcag ttggaggcgc tctcaactca 1321 ttgggcaagg gcatccatca aatttttgga gcagctttca aatcattgtt tggaggaatg 1381 tcctggttct cacaaattct cattggaacg ttgctgatgt ggttgggtct gaacacaaag 1441 aatggatcta tttcccttat gtgcttggcc ttagggggag tgttgatctt cttatctaca 1501 gccgtctctg ct Link to comment Share on other sites More sharing options...
niman Posted September 12, 2016 Author Report Share Posted September 12, 2016 Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KX216639.1| Zika virus isolate SS57-2016 envelope protein gene, partial cds 2727 2727 100% 0.0 100% KX216639.1 Select seq gb|KX216636.1| Zika virus isolate SS27-2016 envelope protein gene, partial cds 2700 2700 100% 0.0 99% KX216636.1 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 2700 2700 100% 0.0 99% KX266255.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 2700 2700 100% 0.0 99% KU866423.2 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 2700 2700 100% 0.0 99% KX253996.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 2700 2700 100% 0.0 99% KX185891.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 2700 2700 100% 0.0 99% KX117076.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 2700 2700 100% 0.0 99% KU963796.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 2700 2700 100% 0.0 99% KU955589.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 2700 2700 100% 0.0 99% KU820899.2 Select seq gb|KX447521.1| Zika virus isolate 1_0080_PF polyprotein gene, partial cds 2695 2695 100% 0.0 99% KX447521.1 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 2695 2695 100% 0.0 99% KX447509.1 Select seq gb|KX216635.1| Zika virus isolate TS17-2016 envelope protein gene, partial cds 2691 2691 100% 0.0 99% KX216635.1 Select seq gb|KX216634.1| Zika virus isolate TS14-2016 envelope protein gene, partial cds 2691 2691 100% 0.0 99% KX216634.1 Select seq gb|KX806557.1| Zika virus isolate TS17-2016, complete genome 2691 2691 100% 0.0 99% KX806557.1 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 2691 2691 100% 0.0 99% KJ776791.2 Select seq gb|KX447520.1| Zika virus isolate 1_0016_PF polyprotein gene, partial cds 2691 2691 100% 0.0 99% KX447520.1 Select seq gb|KX447519.1| Zika virus isolate 1_0199_PF polyprotein gene, partial cds 2691 2691 100% 0.0 99% KX447519.1 Select seq gb|KX447518.1| Zika virus isolate 1_0117_PF polyprotein gene, partial cds 2691 2691 100% 0.0 99% KX447518.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 2691 2691 100% 0.0 99% KX447516.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 2691 2691 100% 0.0 99% KX447515.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 2691 2691 100% 0.0 99% KX447513.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 2691 2691 100% 0.0 99% KX447510.1 Select seq gb|KX576684.1| Zika virus vector pZIKV-ICD, complete sequence 2691 2691 100% 0.0 99% KX576684.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 2691 2691 100% 0.0 99% KX369547.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 2691 2691 100% 0.0 99% KX280026.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 2691 2691 100% 0.0 99% KX262887.1 Select seq gb|KX216638.1| Zika virus isolate ESS23-2015 envelope protein gene, partial cds 2686 2686 100% 0.0 99% KX216638.1 Select seq gb|KX216637.1| Zika virus isolate GS29-2016 envelope protein gene, partial cds 2686 2686 100% 0.0 99% KX216637.1 Select seq gb|KX216632.1| Zika virus isolate SIS58-2015 envelope protein gene, partial cds 2686 2686 100% 0.0 99% KX216632.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 2686 2686 100% 0.0 99% KX694534.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 2686 2686 100% 0.0 99% KX447514.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 2686 2686 100% 0.0 99% KX447511.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 2686 2686 100% 0.0 99% KX446951.1 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 2686 2686 100% 0.0 99% KX247632.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 2686 2686 100% 0.0 99% KX051563.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 2686 2686 100% 0.0 99% KU509998.3 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 2686 2686 100% 0.0 99% KU991811.1 Select seq gb|KU646828.1| Zika virus isolate Si322 polyprotein gene, partial cds 2686 2686 100% 0.0 99% KU646828.1 Select seq gb|KX380263.1| Zika virus isolate FS92-2016 envelope protein gene, partial cds 2682 2682 100% 0.0 99% KX380263.1 Select seq gb|KX216640.1| Zika virus isolate CKS63-2014 envelope protein gene, partial cds 2682 2682 100% 0.0 99% KX216640.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 2682 2682 100% 0.0 99% KX197205.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 2682 2682 100% 0.0 99% KX447512.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 2682 2682 100% 0.0 99% KX446950.1 Select seq gb|KU758871.1| Zika virus isolate 17170 polyprotein gene, partial cds 2682 2682 100% 0.0 99% KU758871.1 Select seq gb|KU758870.1| Zika virus isolate 17160 polyprotein gene, partial cds 2682 2682 100% 0.0 99% KU758870.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 2682 2682 100% 0.0 99% KX247646.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 2682 2682 100% 0.0 99% KX198135.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 2682 2682 100% 0.0 99% KX197192.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 2682 2682 100% 0.0 99% KX156776.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 2682 2682 100% 0.0 99% KX156775.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 2682 2682 100% 0.0 99% KX156774.1 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 2682 2682 100% 0.0 99% KU870645.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 2682 2682 100% 0.0 99% KU922960.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 2682 2682 100% 0.0 99% KU922923.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 2682 2682 100% 0.0 99% KU729218.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 2682 2682 100% 0.0 99% KU527068.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 2682 2682 100% 0.0 99% KU647676.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 2682 2682 100% 0.0 99% KU321639.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 2679 2679 100% 0.0 99% KX766028.1 Select seq gb|KX380262.1| Zika virus isolate MS10-2016 envelope protein gene, partial cds 2677 2677 100% 0.0 99% KX380262.1 Select seq gb|KX216633.1| Zika virus isolate VS51-2016 envelope protein gene, partial cds 2677 2677 100% 0.0 99% KX216633.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 2677 2677 100% 0.0 99% KU820897.5 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 2677 2677 100% 0.0 99% KX766029.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 2677 2677 100% 0.0 99% KX447517.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 2677 2677 100% 0.0 99% KX520666.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 2677 2677 100% 0.0 99% KU758877.1 Select seq gb|KU758873.1| Zika virus isolate 18246 polyprotein gene, partial cds 2677 2677 100% 0.0 99% KU758873.1 Select seq gb|KU758869.1| Zika virus isolate 05211 polyprotein gene, partial cds 2677 2677 100% 0.0 99% KU758869.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 2677 2677 100% 0.0 99% KU937936.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 2677 2677 100% 0.0 99% KX087102.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 2677 2677 100% 0.0 99% KU940228.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 2677 2677 100% 0.0 99% KU926309.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 2677 2677 100% 0.0 99% KU497555.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 2677 2677 100% 0.0 99% KU501217.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 2677 2677 100% 0.0 99% KU501216.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 2677 2677 100% 0.0 99% KU365778.1 Select seq gb|KU312315.1| Zika virus isolate Z1106027 polyprotein gene, partial cds 2677 2677 100% 0.0 99% KU312315.1 Select seq gb|KU312314.1| Zika virus isolate Z1106031 polyprotein gene, partial cds 2677 2677 100% 0.0 99% KU312314.1 Select seq gb|KJ634273.1| Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds 2677 2677 100% 0.0 99% KJ634273.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 2673 2673 100% 0.0 99% KX702400.1 Select seq dbj|LC171327.1| Zika virus gene for polyprotein, partial cds, strain: ZIKV/Hu/Chiba/S36/2016 2673 2673 100% 0.0 99% LC171327.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 2673 2673 100% 0.0 99% KX548902.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 2673 2673 100% 0.0 99% KX377337.1 Select seq gb|KU758874.1| Zika virus isolate 20114 polyprotein gene, partial cds 2673 2673 100% 0.0 99% KU758874.1 Select seq gb|KU758868.1| Zika virus isolate 27229 polyprotein gene, partial cds 2673 2673 100% 0.0 99% KU758868.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 2673 2673 100% 0.0 99% KU820898.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 2673 2673 100% 0.0 99% KU740184.2 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 2673 2673 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 2673 2673 100% 0.0 99% KU853012.1 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 2673 2673 100% 0.0 99% KU761564.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 2673 2673 100% 0.0 99% KU707826.1 Select seq gb|KU646827.1| Zika virus isolate Si323 polyprotein gene, partial cds 2673 2673 100% 0.0 99% KU646827.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 2673 2673 100% 0.0 99% KU501215.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 2673 2673 100% 0.0 99% KU365780.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 2673 2673 100% 0.0 99% KU365779.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 2673 2673 100% 0.0 99% KU365777.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 2668 2668 100% 0.0 99% KX673530.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 2668 2668 100% 0.0 99% KX601168.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 2668 2668 100% 0.0 99% KX087101.2 Link to comment Share on other sites More sharing options...
niman Posted September 12, 2016 Author Report Share Posted September 12, 2016 LOCUS KX216640 1512 bp RNA linear VRL 07-SEP-2016 DEFINITION Zika virus isolate CKS63-2014 envelope protein gene, partial cds. ACCESSION KX216640 VERSION KX216640.1 GI:1029979487 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 1512) AUTHORS Moore,P.R. and Pyke,A.T. TITLE First isolation of Zika virus in Australia from a clinical patient, imported from Tonga JOURNAL Unpublished REFERENCE 2 (bases 1 to 1512) AUTHORS Moore,P.R. and Pyke,A.T. TITLE Direct Submission JOURNAL Submitted (04-MAY-2016) Public Health Virology, Queensland Health Forensic and Scientific Services, 39 Kessels Road, Coopers Plains, QLD 4108, Australia COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1512 /organism="Zika virus" /mol_type="genomic RNA" /isolate="CKS63-2014" /host="Homo sapiens" /db_xref="taxon:64320" /country="Cook Islands" /collection_date="2014" /note="genotype: Asian" CDS <1..>1512 /codon_start=1 /product="envelope protein" /protein_id="ANF28865.1" /db_xref="GI:1029979488" /translation="IRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSA" ORIGIN 1 atcaggtgca taggagtcag caatagggac tttgtggaag gtatgtcagg tgggacttgg 61 gttgatgttg tcttggaaca tggaggttgt gtcaccgtaa tggcacagga caaaccgact 121 gtcgacatag agctggttac aacaacagtc agcaacatgg cggaggtaag atcctactgc 181 tatgaggcat caatatcgga catggcttcg gacagccgct gcccaacaca aggtgaagcc 241 taccttgaca agcaatcaga cactcaatat gtctgcaaaa gaacgttagt ggacagaggc 301 tggggaaatg gatgtggact ttttggcaaa gggagcctgg tgacatgcgc taagtttgca 361 tgctccaaga aaatgaccgg gaagagcatc cagccagaga atctggagta ccggataatg 421 ctgtcagttc atggctccca gcacagtggg atgatcgtta atgacacagg acatgaaact 481 gatgagaata gagcgaaggt tgagataacg cccaattcac caagagccga agccaccctg 541 gggggttttg gaagcctagg acttgattgt gaaccgagga caggccttga cttttcagat 601 ttgtattact tgactatgaa taacaagcac tggttagttc acaaggagtg gttccacgac 661 attccattac cttggcatgc tggggcagac accggaactc cacactggaa caacaaagaa 721 gcactggtag agttcaagga cgcacatgcc aaaaggcaaa ctgtcgtggt tctagggagt 781 caagaaggag cagttcacac ggcccttgct ggagctctgg aggctgagat ggatggtgca 841 aagggaaggc tgtcctctgg ccacttgaaa tgtcgcctga aaatggataa acttagattg 901 aagggcgtgt catactcctt gtgtaccgca gcgttcacat tcaccaaaat cccggctgaa 961 acactgcacg ggacagtcac agtggaggta cagtacgcag ggacagatgg accttgcaag 1021 gttccagctc agatggcggt ggacatgcaa actctgaccc cagttgggag gttgataacc 1081 gctaaccccg taatcactga aagcactgag aactctaaga tgatgctgga acttgatcca 1141 ccatttgggg actcttacat tgtcatagga gtcggggaga agaagatcac ccaccactgg 1201 cacaggagtg gcagcaccat tggaaaagca tttgaagcca ctgtgagagg tgccaagaga 1261 atggcagtct tgggagacac agcctgggac tttggatcag ttggaggcgc tctcaactca 1321 ttgggcaagg gcatccatca aatttttgga gcagctttca aatcattgtt tggaggaatg 1381 tcctggttct cacaaattct cattggaacg ttgctgatgt ggttgggtct gaacacaaag 1441 aatggatcta tttcccttat gtgcttggcc ttagggggag tgttgatctt cttatccaca 1501 gccgtctctg ct Link to comment Share on other sites More sharing options...
niman Posted September 12, 2016 Author Report Share Posted September 12, 2016 Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KX216640.1| Zika virus isolate CKS63-2014 envelope protein gene, partial cds 2727 2727 100% 0.0 100% KX216640.1 Select seq gb|KJ634273.1| Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds 2722 2722 100% 0.0 99% KJ634273.1 Select seq gb|KX447521.1| Zika virus isolate 1_0080_PF polyprotein gene, partial cds 2713 2713 100% 0.0 99% KX447521.1 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 2713 2713 100% 0.0 99% KX447509.1 Select seq gb|KX216635.1| Zika virus isolate TS17-2016 envelope protein gene, partial cds 2709 2709 100% 0.0 99% KX216635.1 Select seq gb|KX216634.1| Zika virus isolate TS14-2016 envelope protein gene, partial cds 2709 2709 100% 0.0 99% KX216634.1 Select seq gb|KX806557.1| Zika virus isolate TS17-2016, complete genome 2709 2709 100% 0.0 99% KX806557.1 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 2709 2709 100% 0.0 99% KJ776791.2 Select seq gb|KX447520.1| Zika virus isolate 1_0016_PF polyprotein gene, partial cds 2709 2709 100% 0.0 99% KX447520.1 Select seq gb|KX447519.1| Zika virus isolate 1_0199_PF polyprotein gene, partial cds 2709 2709 100% 0.0 99% KX447519.1 Select seq gb|KX447518.1| Zika virus isolate 1_0117_PF polyprotein gene, partial cds 2709 2709 100% 0.0 99% KX447518.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 2709 2709 100% 0.0 99% KX447516.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 2709 2709 100% 0.0 99% KX447515.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 2709 2709 100% 0.0 99% KX447513.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 2709 2709 100% 0.0 99% KX447510.1 Select seq gb|KX576684.1| Zika virus vector pZIKV-ICD, complete sequence 2709 2709 100% 0.0 99% KX576684.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 2709 2709 100% 0.0 99% KX369547.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 2709 2709 100% 0.0 99% KX280026.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 2709 2709 100% 0.0 99% KX262887.1 Select seq gb|KX216638.1| Zika virus isolate ESS23-2015 envelope protein gene, partial cds 2704 2704 100% 0.0 99% KX216638.1 Select seq gb|KX216637.1| Zika virus isolate GS29-2016 envelope protein gene, partial cds 2704 2704 100% 0.0 99% KX216637.1 Select seq gb|KX216632.1| Zika virus isolate SIS58-2015 envelope protein gene, partial cds 2704 2704 100% 0.0 99% KX216632.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 2704 2704 100% 0.0 99% KX694534.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 2704 2704 100% 0.0 99% KX447514.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 2704 2704 100% 0.0 99% KX447511.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 2704 2704 100% 0.0 99% KX446951.1 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 2704 2704 100% 0.0 99% KX247632.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 2704 2704 100% 0.0 99% KX051563.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 2704 2704 100% 0.0 99% KU509998.3 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 2704 2704 100% 0.0 99% KU991811.1 Select seq gb|KU646828.1| Zika virus isolate Si322 polyprotein gene, partial cds 2704 2704 100% 0.0 99% KU646828.1 Select seq gb|KX380263.1| Zika virus isolate FS92-2016 envelope protein gene, partial cds 2700 2700 100% 0.0 99% KX380263.1 Select seq gb|KX216636.1| Zika virus isolate SS27-2016 envelope protein gene, partial cds 2700 2700 100% 0.0 99% KX216636.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 2700 2700 100% 0.0 99% KX197205.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 2700 2700 100% 0.0 99% KX447512.1 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 2700 2700 100% 0.0 99% KX266255.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 2700 2700 100% 0.0 99% KX446950.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 2700 2700 100% 0.0 99% KU866423.2 Select seq gb|KU758871.1| Zika virus isolate 17170 polyprotein gene, partial cds 2700 2700 100% 0.0 99% KU758871.1 Select seq gb|KU758870.1| Zika virus isolate 17160 polyprotein gene, partial cds 2700 2700 100% 0.0 99% KU758870.1 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 2700 2700 100% 0.0 99% KX253996.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 2700 2700 100% 0.0 99% KX247646.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 2700 2700 100% 0.0 99% KX198135.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 2700 2700 100% 0.0 99% KX197192.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 2700 2700 100% 0.0 99% KX185891.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 2700 2700 100% 0.0 99% KX156776.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 2700 2700 100% 0.0 99% KX156775.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 2700 2700 100% 0.0 99% KX156774.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 2700 2700 100% 0.0 99% KX117076.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 2700 2700 100% 0.0 99% KU963796.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 2700 2700 100% 0.0 99% KU955589.1 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 2700 2700 100% 0.0 99% KU870645.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 2700 2700 100% 0.0 99% KU922960.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 2700 2700 100% 0.0 99% KU922923.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 2700 2700 100% 0.0 99% KU820899.2 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 2700 2700 100% 0.0 99% KU729218.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 2700 2700 100% 0.0 99% KU527068.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 2700 2700 100% 0.0 99% KU647676.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 2700 2700 100% 0.0 99% KU321639.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 2697 2697 100% 0.0 99% KX766028.1 Select seq gb|KX380262.1| Zika virus isolate MS10-2016 envelope protein gene, partial cds 2695 2695 100% 0.0 99% KX380262.1 Select seq gb|KX216633.1| Zika virus isolate VS51-2016 envelope protein gene, partial cds 2695 2695 100% 0.0 99% KX216633.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 2695 2695 100% 0.0 99% KU820897.5 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 2695 2695 100% 0.0 99% KX766029.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 2695 2695 100% 0.0 99% KX447517.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 2695 2695 100% 0.0 99% KX520666.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 2695 2695 100% 0.0 99% KU758877.1 Select seq gb|KU758873.1| Zika virus isolate 18246 polyprotein gene, partial cds 2695 2695 100% 0.0 99% KU758873.1 Select seq gb|KU758869.1| Zika virus isolate 05211 polyprotein gene, partial cds 2695 2695 100% 0.0 99% KU758869.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 2695 2695 100% 0.0 99% KU937936.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 2695 2695 100% 0.0 99% KX087102.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 2695 2695 100% 0.0 99% KU940228.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 2695 2695 100% 0.0 99% KU926309.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 2695 2695 100% 0.0 99% KU497555.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 2695 2695 100% 0.0 99% KU501217.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 2695 2695 100% 0.0 99% KU501216.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 2695 2695 100% 0.0 99% KU365778.1 Select seq gb|KU312315.1| Zika virus isolate Z1106027 polyprotein gene, partial cds 2695 2695 100% 0.0 99% KU312315.1 Select seq gb|KU312314.1| Zika virus isolate Z1106031 polyprotein gene, partial cds 2695 2695 100% 0.0 99% KU312314.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 2691 2691 100% 0.0 99% KX702400.1 Select seq dbj|LC171327.1| Zika virus gene for polyprotein, partial cds, strain: ZIKV/Hu/Chiba/S36/2016 2691 2691 100% 0.0 99% LC171327.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 2691 2691 100% 0.0 99% KX548902.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 2691 2691 100% 0.0 99% KX377337.1 Select seq gb|KU758874.1| Zika virus isolate 20114 polyprotein gene, partial cds 2691 2691 100% 0.0 99% KU758874.1 Select seq gb|KU758868.1| Zika virus isolate 27229 polyprotein gene, partial cds 2691 2691 100% 0.0 99% KU758868.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 2691 2691 100% 0.0 99% KU820898.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 2691 2691 100% 0.0 99% KU740184.2 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 2691 2691 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 2691 2691 100% 0.0 99% KU853012.1 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 2691 2691 100% 0.0 99% KU761564.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 2691 2691 100% 0.0 99% KU707826.1 Select seq gb|KU646827.1| Zika virus isolate Si323 polyprotein gene, partial cds 2691 2691 100% 0.0 99% KU646827.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 2691 2691 100% 0.0 99% KU501215.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 2691 2691 100% 0.0 99% KU365780.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 2691 2691 100% 0.0 99% KU365779.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 2691 2691 100% 0.0 99% KU365777.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 2686 2686 100% 0.0 99% KX673530.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 2686 2686 100% 0.0 99% KX601168.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 2686 2686 100% 0.0 99% KX087101.2 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 2686 2686 100% 0.0 99% KX056898.1 Link to comment Share on other sites More sharing options...
niman Posted September 12, 2016 Author Report Share Posted September 12, 2016 LOCUS KX380262 1512 bp RNA linear VRL 07-SEP-2016 DEFINITION Zika virus isolate MS10-2016 envelope protein gene, partial cds. ACCESSION KX380262 VERSION KX380262.1 GI:1036637436 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 1512) AUTHORS Pyke,A.T. and Moore,P.R. TITLE First isolation of Zika virus in Australia from a clinical patient, imported from Tonga JOURNAL Unpublished REFERENCE 2 (bases 1 to 1512) AUTHORS Pyke,A.T. and Moore,P.R. TITLE Direct Submission JOURNAL Submitted (14-JUN-2016) Public Health Virology, Queensland Health Forensic and Scientific Services, 39 Kessels Road, Coopers Plains, QLD 4108, Australia COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1512 /organism="Zika virus" /mol_type="genomic RNA" /isolate="MS10-2016" /host="Homo sapiens" /db_xref="taxon:64320" /country="Mexico" /collection_date="2016" /note="genotype: Asian" CDS <1..>1512 /codon_start=1 /product="envelope protein" /protein_id="ANK57898.1" /db_xref="GI:1036637437" /translation="IRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHVGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSA" ORIGIN 1 atcaggtgca taggagtcag caatagggac tttgtggaag gtatgtcagg tgggacttgg 61 gttgatgttg tcttggaaca tggaggttgt gtcaccgtaa tggcacagga caaaccgact 121 gtcgacatag agctggttac aacaacagtc agcaacatgg cggaggtaag atcctactgc 181 tatgaggcat caatatcaga catggcttcg gacagccgct gcccaacaca aggtgaagcc 241 taccttgaca agcaatcaga cactcaatat gtctgcaaaa gaacgttagt ggacagaggc 301 tggggaaatg gatgtggact ttttggcaaa gggagcctgg tgacatgcgc taagtttgca 361 tgctccaaga aaatgaccgg gaagagcatc cagccagaga atctggagta ccggataatg 421 ctgtcagttc atggctccca gcacagtggg atgatcgtta atgacacagg acatgaaact 481 gatgagaata gagcgaaggt tgagataacg cccaattcac caagagccga agccaccctg 541 gggggttttg gaagcctagg acttgattgt gaaccgagga caggccttga cttttcagat 601 ttgtattact tgactatgaa caacaagcac tggttggttc acaaggagtg gttccacgac 661 attccattac cttggcacgt tggggcagac accggaactc cacactggaa caacaaagaa 721 gcactggtag agttcaagga cgcacatgcc aaaaggcaaa ctgtcgtggt tctagggagt 781 caagaaggag cagttcacac ggcccttgct ggagctctgg aggctgagat ggatggtgca 841 aagggaaggc tgtcctctgg ccacttgaaa tgtcgcctga aaatggacaa acttagattg 901 aagggcgtgt catactcctt gtgtaccgca gcgttcacat tcaccaagat cccggctgaa 961 acactgcacg ggacagtcac agtggaggta cagtacgcag ggacagatgg accttgcaag 1021 gttccagctc agatggcggt ggacatgcaa actctgaccc cagttgggag gttgataacc 1081 gctaaccccg taatcactga aagcactgag aactctaaga tgatgctgga acttgatcca 1141 ccatttgggg actcttacat tgtcatagga gtcggggaga agaagatcac ccaccactgg 1201 cacaggagtg gcagcaccat tggaaaagca tttgaagcca ctgtgagagg tgccaagaga 1261 atggcagtct tgggagacac agcctgggac tttggatcag ttggaggcgc tctcaactca 1321 ttgggcaagg gcatccatca aatttttgga gcagctttca aatcattgtt tggaggaatg 1381 tcctggttct cacaaattct cattggaacg ttgctgatgt ggttgggtct gaacacaaag 1441 aatggatcta tttcccttat gtgcttggcc ttagggggag tgttgatctt cttatccaca 1501 gccgtctctg ct Link to comment Share on other sites More sharing options...
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