niman Posted September 14, 2016 Report Share Posted September 14, 2016 Singapore National Public Health Laboratory has released a full 2016 Zika sequence, ZKA-16-097, from current outbreak. As expected, the sequence is similar to recent South Pacific sequences. Link to comment Share on other sites More sharing options...
niman Posted September 14, 2016 Author Report Share Posted September 14, 2016 LOCUS KX813683 10484 bp ss-RNA linear VRL 11-SEP-2016 DEFINITION Zika virus isolate ZKA-16-097 polyprotein gene, complete cds. ACCESSION KX813683 VERSION KX813683.1 GI:1062047413 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10484) AUTHORS Ng,Y., Mak,T., Phuah,S., Cui,L., Maurer-Stroh,S. and Lin,R.T.P. TITLE Genome sequences of local transmitted Zika viruses in Singapore in 2016 JOURNAL Unpublished REFERENCE 2 (bases 1 to 10484) AUTHORS Ng,Y., Mak,T., Phuah,S., Cui,L., Maurer-Stroh,S. and Lin,R.T.P. TITLE Direct Submission JOURNAL Submitted (03-SEP-2016) National Public Health Laboratory, Communicable Disease Division, Ministry of Health, 11 Jln Tan Tock Seng, Singapore 308433, Singapore COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10484 /organism="Zika virus" /mol_type="genomic RNA" /isolate="ZKA-16-097" /isolation_source="urine" /host="Homo sapiens" /db_xref="taxon:64320" /country="Singapore" /collection_date="27-Aug-2016" CDS 30..10301 /codon_start=1 /product="polyprotein" /protein_id="AOL02459.1" /db_xref="GI:1062047414" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRSDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAAHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSMVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRYGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPMLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKRKKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST QVRYLGEEGSTPGVL" ORIGIN 1 tttggatttg gaaacgagag tttctggtca tgaaaaaccc aaaaaagaaa tccggaggat 61 tccggattgt caatatgcta aaacgcggag tagcccgtgt gagccccttt gggggcttga 121 agaggctgcc agccggactt ctgctgggtc atgggcccat caggatggtc ttggcgattc 181 tagccttttt gaggttcacg gcaatcaagc catcactggg tctcatcaat agatggggtt 241 cagtggggaa aaaagaggct atggaaataa taaagaagtt caagaaagat ctggctgcca 301 tgctgagaat aatcaatgct aggaaggaga agaagagacg aggcgcagat actagtgtcg 361 gaattgttgg cctcctgctg accacagcta tggcagcgga ggtcactaga cgtgggagtg 421 catactatat gtacttggac agaagcgatg ctggggaggc catatctttt ccaaccacac 481 tggggatgaa taagtgttat atacagatca tggatcttgg acacatgtgt gatgccacca 541 tgagctatga atgccctatg ctggatgagg gggtagaacc agatgacgtc gattgttggt 601 gcaacacgac gtcaacttgg gttgtgtacg gaacctgcca tcacaaaaaa ggtgaagcac 661 ggagatctag aagagctgtg acgctcccct cccattccac taggaagctg caaacgcggt 721 cgcagacctg gttggagtca agagaataca caaagcactt gattagagtc gaaaattgga 781 tattcaggaa ccctggcttc gcgttagcag cagctgccat cgcttggctt ttgggaagct 841 caacgagcca aaaagtcata tacttggtca tgatactgct gattgccccg gcatacagca 901 tcaggtgcat aggagtcagc aatagggact ttgtggaagg tatgtcaggt gggacttggg 961 ttgatgttgt cttggaacat ggaggttgtg tcaccgtaat ggcacaggac aaaccgactg 1021 tcgacataga gctggttaca acaacagtca gcaacatggc ggaggtaaga tcctactgct 1081 atgaggcatc aatatcggac atggcttcgg acagccgctg cccaacacaa ggtgaagcct 1141 accttgacaa gcaatcagat acccaatatg tctgcaaaag aacgttagtg gacagaggct 1201 ggggaaatgg atgtggactt tttggaaaag ggagcctggt gacatgcgct aagtttgcat 1261 gctccaagaa aatgaccggg aagagcatcc agccagagaa tctggagtac cggataatgc 1321 tgtcagtcca tggctcccag cacagtggga tgatcgttaa tgacacagga catgaaactg 1381 atgagaatag agcgaaggtt gagataacgc ccaattcacc aagagccgaa gccaccctgg 1441 ggggttttgg aagcctagga cttgattgtg aaccgaggac aggccttgac ttttcagatt 1501 tgtattactt gactatgaat aacaagcact ggttggttca caaggagtgg ttccacgaca 1561 ttccattacc ttggcacgct ggggcagaca ccggaactcc acactggaac aacaaagaag 1621 cactggtaga gttcaaggac gcacatgcca aaaggcaaac tgtcgtggtt ctagggagtc 1681 aagaaggagc agttcacacg gcccttgctg gagctctgga ggctgagatg gatggtgcaa 1741 agggaaggct gtcctctggc cacttgaaat gtcgcctgaa aatggacaaa cttagattga 1801 agggcgtgtc atactccttg tgtaccgcag cgttcacatt caccaagatc ccggctgaaa 1861 cactgcacgg gacagtcaca gtggaggtac agtacgcagg gacagatgga ccctgcaagg 1921 ttccagctca gatggcggtg gacatgcaaa ctctgacccc agttgggagg ttgataaccg 1981 ctaaccccgt aatcactgaa agcactgaga actctaagat gatgctggaa cttgatccac 2041 catttgggga ctcttacatt gtcataggag tcggggagaa gaagatcacc caccactggc 2101 acaggagtgg cagtaccatt ggaaaagcat ttgaagccac tgtgagaggt gccaagagaa 2161 tggcagtctt gggagacaca gcttgggact ttggatcagt tggaggcgct ctcaactcat 2221 tgggcaaggg catccatcaa atttttggag cagctttcaa atcattgttt ggaggaatgt 2281 cctggttctc acaaattctc attggaacgt tgctgatgtg gttgggcctg aacacaaaga 2341 atggatctat ttcccttatg tgcttggcct tagggggagt gttgatcttc ttatccacag 2401 ccgtctctgc tgatgtgggg tgctcggtgg acttctcaaa gaaggaaacg agatgcggta 2461 caggggtgtt cgtctataac gacgttgaag cctggaggga caggtacaag taccatcctg 2521 actccccccg tagattggca gcagcagtca agcaagcctg ggaagatggt atctgtggga 2581 tctcctctgt ttcaagaatg gaaaacatca tgtggagatc agtagaaggg gagctcaacg 2641 caatcctgga agaaaatgga gttcaactga cggtcgttgt gggatctgta aaaaacccca 2701 tgtggagagg tccacagaga ctgcccgtgc ctgtgaacga gctgccccac ggctggaagg 2761 cttgggggaa atcgtacttc gtcagagcag caaagacaaa taacagcttt gtcgtggatg 2821 gtgacacact gaaggaatgc ccactcaaac atagagcatg gaacagcttt cttgtggagg 2881 atcatgggtt cggggtattt cacactagtg tctggctcaa ggttagagaa gattattcat 2941 tagagtgtga tcctgccgtt attggaacag ctgttaaggg aaaggaggct gcacacagtg 3001 atctaggcta ctggattgag agtgagaaga atgacacatg gaggctgaag agggcccacc 3061 tgatcgagat gaaaacatgt gaatggccaa agtcccacac attgtggaca gatggaatag 3121 aagagagtga tctgatcata cccaagtctt tagctgggcc actcagccat cacaacacca 3181 gagagggcta caggacccaa atgaaagggc catggcacag tgaagagctt gaaattcggt 3241 ttgaggaatg cccaggcact aaggtccacg tggaggaaac atgtggaaca agaggaccgt 3301 ctctgagatc aaccactgca agcggaaggg tgatcgagga atggtgctgc agggagtgca 3361 caatgccccc actgtcgttc cgggctaaag atggctgttg gtatggaatg gagataaggc 3421 ccaggaaaga accagaaagt aacttagtaa ggtcaatggt gactgcagga tcaactgatc 3481 acatggatca cttctccctt ggagtgcttg tgattctgct catggtgcag gaagggctga 3541 agaagagaat gaccacaaag atcatcataa gcacatcaat ggcagtgctg gtagctatga 3601 tcctgggagg attttcaatg agtgacctgg ctaagcttgc aattttgatg ggtgccacct 3661 tcgcggaaat gaacactgga ggagatgtag ctcatctggc gctgatagcg gcattcaaag 3721 tcagaccagc gttgctggta tctttcatct tcagagctaa ttggacaccc cgtgaaagca 3781 tgctgctggc cttggcctcg tgtcttttgc aaactgcgat ttccgccttg gaaggcgacc 3841 tgatggttct catcaatggt tttgctctgg cctggttggc aatacgagcg atggttgttc 3901 cacgcactga caacatcacc ttggcaatcc tggctgctct gacaccactg gcccggggca 3961 cactgcttgt ggcgtggaga gcaggccttg ctacttgcgg ggggttcatg ctcctctctc 4021 tgaagggaaa aggcagtgtg aagaagaact taccatttgt catggccctg ggactaaccg 4081 ctgtgaggct agtcgacccc atcaacgtgg tgggactgct gttgctcaca aggagtggga 4141 agcggagctg gccccctagc gaagtactca cagctgttgg cctgatatgc gcattggctg 4201 gagggttcgc caaggcagat atagagatgg ctgggcccat ggccgcggtt ggtctgctaa 4261 ttgtcagtta cgtggtctca ggaaagagtg tggacatgta cattgaaaga gcaggtgaca 4321 tcacatggga aaaagatgcg gaagtcactg gaaacagtcc ccggctcgat gtggcactag 4381 atgagagtgg tgatttctcc ctggtggagg atgacggtcc ccccatgaga gagatcatac 4441 ttaaagtggt cctgatgacc atctgtggca tgaacccaat agccataccc tttgcagctg 4501 gagcgtggta cgtatacgtg aagactggaa aaaggagtgg tgctctatgg gatgtgcctg 4561 ctcccaagga agtaaaaaag ggggagacca cagatggagt gtacagagta atgactcgta 4621 gactgctagg ttcaacacaa gttggagtgg gagtcatgca agagggggtc tttcacacta 4681 tgtggcacgt cacaaaagga tccgcgctga gaagcggtga agggagactt gatccatact 4741 ggggagatgt caagcaggat ctggtgtcat actgtggtcc atggaagcta gatgccgcct 4801 gggacgggca cagcgaggtg cagctcttgg ccgtgccccc cggagagaga gcgaggaaca 4861 tccagactct gcccggaata tttaagacaa aggatgggga cattggagcg gttgcgctgg 4921 actacccagc aggaacttca ggatctccaa tcctagacaa gtgtgggaga gtgataggac 4981 tctatggcaa tggggtcgtg atcaaaaatg ggagttatgt tagtgccatc acccaaggga 5041 ggagggagga agagactcct gttgagtgct tcgagccttc gatgctgaag aagaagcagc 5101 taactgtctt agacttgcat cctggagctg ggaaaaccag gagagttctt cctgaaatag 5161 tccgtgaagc cataaaaaca agactccgta ctgtgatctt agctccaact agggttgtcg 5221 ctgctgaaat ggaggaagcc cttagagggc ttccagtgcg ttatatgaca acagcagtca 5281 atgtcaccca ctctgggaca gaaatcgttg acttaatgtg ccatgccacc ttcacttcac 5341 gtctactaca gccaatcaga gtccccaact ataatctgta tattatggat gaggcccact 5401 tcacagatcc ctcaagtata gcagcaagag gatacatttc aacaagggtt gagatgggcg 5461 aggcggctgc catcttcatg accgccacgc caccaggaac ccgtgacgca tttccggact 5521 ccaactcacc aattatggac accgaagtgg aagtcccgga gagagcctgg agctcaggct 5581 ttgattgggt gacggaccat tctggaaaga cagtttggtt tgttccaagc gtgaggaatg 5641 gcaatgagat cgcagcttgt ctgacgaagg ctggaaaacg ggtcatacag ctcagcagaa 5701 agacttttga gacagagttc cagaaaacaa aacatcaaga gtgggacttt gtcgtgacaa 5761 ctgacatttc agagatgggc gccaacttta aagctgaccg tgtcatagat tccaggagat 5821 gcctaaagcc ggtcatactt gatggcgaga gagtcattct ggctggaccc atgcctgtca 5881 cacatgccag cgctgcccag aggagggggc gcataggcag gaatcccaac aaacctggag 5941 atgagtatct gtatggaggt gggtgcgcag agactgatga agaccatgca cactggcttg 6001 aagcaagaat gctccttgac aatatctacc tccaagatgg cctcatagcc tcgctctatc 6061 gacctgaggc cgacaaagta gcagccattg agggagagtt caagcttagg acggagcaaa 6121 ggaagacctt tgtggaactc atgaaaagag gagatcttcc tgtttggctg gcctatcagg 6181 ttgcatctgc cggaataacc tacacagata gaagatggtg ctttgatggc acgaccaaca 6241 acaccataat ggaagacagt gtgccggcag aggtgtggac cagatacgga gagaaaagag 6301 tgctcaaacc gaggtggatg gacgccagag tctgttcaga tcatgcggcc ctgaagtcat 6361 tcaaggagtt tgccgctggg aaaagaggag cggcttttgg agtgatggaa gccctgggaa 6421 cactgccggg acacatgaca gagagattcc aggaagccat tgacaacctc gctgtgctca 6481 tgcgggcaga gactggaagc agaccttaca aagccgcggc ggcccaattg ccggagaccc 6541 tagagaccat tatgcttttg gggttgctgg gaacagtctc gctgggaatc tttttcgtct 6601 tgatgcggaa caagggcata gggaagatgg gctttggaat ggtgactctt ggggccagcg 6661 catggctcat gtggctctcg gaaattgagc cagccagaat tgcatgtgtc ctcattgttg 6721 tgttcctatt gctggtggtg ctcatacctg agccagaaaa gcaaagatct ccccaggaca 6781 accaaatggc aatcatcatc atggtagcag taggtcttct gggcttgatt accgccaatg 6841 aactcggatg gttggagaga acaaagagtg acctaagcca tctaatggga aggagagagg 6901 agggggcaac cataggattc tcaatggaca ttgacctgcg gccagcctca gcttgggcca 6961 tctatgctgc cctgacaact ttcattaccc cagccgtcca acatgcagtg accacttcat 7021 acaacaacta ctccttaatg gcgatggcca cgcaagctgg agtgttgttt ggtatgggca 7081 aagggatgcc attctacgca tgggactttg gagtcccgct gctaatgata ggttgctact 7141 cacaattaac acccctgacc ctaatagtgg ccatcatttt gctcgtggcg cactacatgt 7201 acttgatccc agggctgcag gcagcagctg cgcgtgctgc ccagaagaga acggcagctg 7261 gcatcatgaa gaaccctgtt gtggatggaa tagtggtgac tgacattgac acaatgacaa 7321 ttgaccccca agtggagaaa aagatgggac aggtgctact catagcagta gccgtctcca 7381 gcgccatact gtcgcggacc gcctgggggt ggggggaggc tggggccctg atcacagctg 7441 caacttccac tttgtgggaa ggctctccga acaagtactg gaactcctct acagccactt 7501 cactgtgtaa catttttagg ggaagttact tggctggagc ttctctaatc tacacagtaa 7561 caagaaacgc tggtttggtc aagagacgtg ggggtggaac aggagagacc ctgggagaga 7621 aatggaaggc ccgcttgaac cagatgtcgg ccctggagtt ctactcctac aaaaagtcag 7681 gcatcaccga ggtgtgcaga gaagaggccc gccgcgccct caaggacggt gtggcaacgg 7741 gaggccatgc tgtgtcccga ggaagtgcaa agctgagatg gttggtggag cggggatacc 7801 tgcagcccta tggaaaggtc attgatcttg gatgtggcag agggggctgg agttactacg 7861 ccgccaccat ccgcaaagtt caagaagtga aaggatacac aaaaggaggc cctggtcatg 7921 aagaacccat gttggtgcaa agctatgggt ggaacatagt ccgtcttaag agtggggtgg 7981 acgtctttca tatggcggct gagccgtgtg acacgttgct gtgtgacata ggtgagtcat 8041 catctagtcc tgaagtggaa gaagcacgga cgctcagagt cctctccatg gtgggggatt 8101 ggcttgaaaa aagaccagga gccttttgta taaaagtgtt gtgcccatac accagcacta 8161 tgatggaaac cctggagcga ctgcagcgta ggtatggggg aggactggtc agagtgccac 8221 tctcccgcaa ctcaacacat gagatgtact gggtctctgg agcgaaaagc aacaccataa 8281 aaagtgtgtc caccacgagc cagctcctct tggggcgcat ggacgggccc aggaggccag 8341 tgaaatatga ggaggatgtg aatctcggct ctggcacgcg ggctgtggta agctgcgctg 8401 aagctcccaa catgaagatc attggtaacc gcattgaaag gatccgcagt gagcacgcgg 8461 aaacgtggtt ctttgacgag aaccacccat ataggacatg ggcttaccat ggaagctatg 8521 aggcccccac acaagggtca gcgtcctctc taataaacgg ggttgtcagg ctcctgtcaa 8581 aaccctggga tgtggtgact ggagtcacag gaatagccat gaccgacacc acaccgtatg 8641 gtcagcaaag agttttcaag gaaaaagtgg acactagggt gccagacccc caagaaggca 8701 ctcgtcaggt tatgagcatg gtctcttcct ggttgtggaa agagctaggc aaacacaaac 8761 ggccacgagt ctgtaccaaa gaagagttca tcaacaaggt tcgtagcaat gcagcattag 8821 gggcaatatt tgaagaggaa aaagagtgga agactgcagt ggaagctgtg aacgatccaa 8881 ggttctgggc tctagtggac aaggaaagag agcaccacct gagaggagag tgccagagct 8941 gtgtgtacaa catgatggga aaaagaaaaa agaaacaggg ggaatttgga aaggccaagg 9001 gcagccgcgc catctggtat atgtggctag gggctagatt tctagagttc gaagcccttg 9061 gattcttgaa cgaggatcac tggatgggga gagagaactc aggaggtggt gttgaagggc 9121 tgggattaca aagactcgga tatgtcctag aagagatgag tcgcatacca ggaggaagga 9181 tgtatgcaga tgacactgct ggctgggaca cccgcatcag caggtttgat ctggagaatg 9241 aagctctaat caccaaccaa atggagaaag ggcacagggc cttggcattg gccataatca 9301 agtacacata ccaaaacaaa gtggtaaagg tccttagacc agctgaaaaa gggaagacag 9361 tgatggacat tatttcaaga caagaccaaa gggggagcgg acaagttgtc acttacgctc 9421 tcaacacatt taccaaccta gtggtgcaac tcattcggaa tatggaggct gaggaagttc 9481 tagagatgca agacttgtgg ctgctgcgga ggtcagagaa agtgaccaac tggttgcaga 9541 gcaacggatg ggataggctc aaacgaatgg cagtcagtgg agatgattgc gttgtgaagc 9601 caattgatga taggtttgca catgccctca ggttcttgaa tgatatgggg aaagttagga 9661 aggacacaca agaatggaaa ccctcaactg gatgggacaa ctgggaagaa gttccgtttt 9721 gctcccacca tttcaacaag ctccatctca aggacgggag gtccattgtg gttccctgcc 9781 gccaccaaga tgaactgatt ggccgggccc gcgtctctcc aggggcggga tggagcatcc 9841 gggagactgc ttgcctagca aaatcatatg cgcagatgtg gcagctcctt tatttccaca 9901 gaagggacct ccgactgatg gccaatgcca tttgttcatc tgtgccagtt gactgggttc 9961 caactgggag aactacctgg tcaatccatg gaaagggaga atggatgacc actgaagaca 10021 tgcttgtggt gtggaacaga gtgtggattg aggagaacga ccacatggaa gacaagaccc 10081 cagttacgaa atggacagac attccctatt tgggaaaaag ggaagactta tggtgtggat 10141 ctctcatagg gcacagaccg cgcaccacct gggctgagaa cattaaaaac acagtcaaca 10201 tggtgcgcag aatcataggt gatgaagaaa agtacatgga ctacctatcc acccaagttc 10261 gctacttggg tgaagaaggg tctacacctg gagtgctgta agcaccaatc ttagtgttgt 10321 caggcctgct agtcagccac agcttgggga aaactgtgca gcctgtgacc cccccaggag 10381 aagctgggaa accaagccca tagtcaggcc gagaacgcca tggcacggaa gaagccatgc 10441 tgcctgtgag cccctcagag gacactgagt caaaaaaccc cacg Link to comment Share on other sites More sharing options...
niman Posted September 14, 2016 Author Report Share Posted September 14, 2016 Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KX813683.1| Zika virus isolate ZKA-16-097 polyprotein gene, complete cds 18886 18886 100% 0.0 100% KX813683.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 18515 18515 100% 0.0 99% KX447512.1 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 18510 18510 100% 0.0 99% KX447509.1 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 18504 18504 100% 0.0 99% KJ776791.2 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 18504 18504 100% 0.0 99% KX369547.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 18499 18499 100% 0.0 99% KX447515.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 18493 18493 100% 0.0 99% KX447514.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 18493 18493 100% 0.0 99% KX447513.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 18487 18487 100% 0.0 99% KX447516.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 18487 18487 100% 0.0 99% KX447511.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 18487 18487 100% 0.0 99% KX447510.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 18460 18460 100% 0.0 99% KX447517.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 18449 18449 100% 0.0 99% KU509998.3 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 18443 18443 100% 0.0 99% KU991811.1 Select seq gb|KX806557.1| Zika virus isolate TS17-2016, complete genome 18438 18438 100% 0.0 99% KX806557.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 18438 18438 100% 0.0 99% KX280026.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 18426 18426 100% 0.0 99% KX051563.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 18421 18421 100% 0.0 99% KX197205.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 18421 18421 100% 0.0 99% KU321639.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 18415 18415 100% 0.0 99% KX198135.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 18415 18415 100% 0.0 99% KU729218.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 18410 18410 100% 0.0 99% KU707826.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 18410 18410 100% 0.0 99% KU365779.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 18404 18404 100% 0.0 99% KX262887.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 18404 18404 100% 0.0 99% KX247646.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 18404 18404 100% 0.0 99% KX197192.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 18404 18404 100% 0.0 99% KU926309.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 18399 18399 100% 0.0 99% KX185891.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 18399 18399 100% 0.0 99% KX117076.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 18399 18399 100% 0.0 99% KU963796.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 18399 18399 100% 0.0 99% KU647676.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 18393 18393 100% 0.0 99% KU820897.5 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 18393 18393 100% 0.0 99% KX694534.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 18393 18393 100% 0.0 99% KU758877.1 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 18393 18393 100% 0.0 99% KX253996.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 18393 18393 100% 0.0 99% KX156776.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 18393 18393 100% 0.0 99% KX087102.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 18393 18393 100% 0.0 99% KU955589.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 18393 18393 100% 0.0 99% KU820899.2 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 18393 18393 100% 0.0 99% KU501217.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 18393 18393 100% 0.0 99% KU365780.1 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 18390 18390 100% 0.0 99% KX266255.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 18390 18390 99% 0.0 99% KU497555.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 18388 18388 100% 0.0 99% KU866423.2 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 18388 18388 100% 0.0 99% KX156774.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 18388 18388 100% 0.0 99% KU940228.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 18388 18388 100% 0.0 99% KU501216.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 18388 18388 100% 0.0 99% KU365777.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 18382 18382 100% 0.0 99% KX156775.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 18382 18382 100% 0.0 99% KU926310.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 18382 18382 100% 0.0 99% KU365778.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 18377 18377 100% 0.0 99% KU922960.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 18377 18377 100% 0.0 99% KU729217.2 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 18377 18377 100% 0.0 99% KU527068.1 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 18373 18373 99% 0.0 99% KU940224.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 18371 18371 100% 0.0 99% KX702400.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 18371 18371 100% 0.0 99% KX548902.1 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 18371 18371 100% 0.0 99% KX247632.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 18371 18371 100% 0.0 99% KU922923.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 18371 18371 100% 0.0 99% KU501215.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 18371 18371 100% 0.0 99% KU312312.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 18366 18366 100% 0.0 99% KX601168.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 18366 18366 100% 0.0 99% KX520666.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 18366 18366 100% 0.0 99% KX446950.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 18366 18366 100% 0.0 99% KX087101.2 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 18360 18360 100% 0.0 99% KX446951.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 18360 18360 100% 0.0 99% KX377337.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 18360 18360 100% 0.0 99% KU937936.1 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 18354 18354 100% 0.0 99% KU870645.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 18351 18351 100% 0.0 99% KX766028.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 18349 18349 100% 0.0 99% KU820898.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 18349 18349 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 18347 18347 100% 0.0 99% KU853012.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 18343 18343 100% 0.0 99% KX056898.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 18343 18343 100% 0.0 99% KU955590.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 18338 18338 100% 0.0 99% KU740184.2 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 18338 18338 100% 0.0 99% KU761564.1 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 18327 18327 100% 0.0 99% KX766029.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 18321 18321 100% 0.0 99% KX673530.1 Select seq gb|KU681081.3| Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome 18310 18310 100% 0.0 99% KU681081.3 Select seq gb|KX694532.1| Zika virus strain ZIKV/Homo sapiens/THA/PLCal_ZV/2013, complete genome 18161 18161 100% 0.0 99% KX694532.1 Select seq gb|KU744693.1| Zika virus isolate VE_Ganxian, complete genome 18161 18161 100% 0.0 99% KU744693.1 Select seq gb|KF993678.1| Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds 18007 18007 99% 0.0 99% KF993678.1 Select seq gb|JN860885.1| Zika virus isolate FSS13025 polyprotein gene, partial cds 17969 17969 99% 0.0 98% JN860885.1 Select seq gb|KU955593.1| Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome 17967 17967 100% 0.0 98% KU955593.1 Select seq gb|EU545988.1| Zika virus polyprotein gene, complete cds 17810 17810 100% 0.0 98% EU545988.1 Select seq gb|KU681082.3| Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome 17573 17573 100% 0.0 98% KU681082.3 Select seq gb|KX601167.1| Zika virus strain ZIKV/Aedes sp./MYS/P6-740/1966, complete genome 16360 16360 99% 0.0 96% KX601167.1 Select seq gb|HQ234499.1| Zika virus isolate P6-740 polyprotein gene, partial cds 16355 16355 99% 0.0 96% HQ234499.1 Select seq gb|KX694533.1| Zika virus strain ZIKV/Aedes aegypti/MYS/P6-740/1966, complete genome 16349 16349 99% 0.0 96% KX694533.1 Select seq gb|KX377336.1| Zika virus strain P6-740, complete genome 16343 16343 99% 0.0 96% KX377336.1 Select seq gb|KX447518.1| Zika virus isolate 1_0117_PF polyprotein gene, partial cds 16303 16303 88% 0.0 99% KX447518.1 Link to comment Share on other sites More sharing options...
niman Posted September 14, 2016 Author Report Share Posted September 14, 2016 Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KX813683.1| Zika virus isolate ZKA-16-097 polyprotein gene, complete cds 2727 2727 100% 0.0 100% KX813683.1 Select seq gb|KX447521.1| Zika virus isolate 1_0080_PF polyprotein gene, partial cds 2686 2686 100% 0.0 99% KX447521.1 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 2686 2686 100% 0.0 99% KX447509.1 Select seq gb|KX216635.1| Zika virus isolate TS17-2016 envelope protein gene, partial cds 2682 2682 100% 0.0 99% KX216635.1 Select seq gb|KX216634.1| Zika virus isolate TS14-2016 envelope protein gene, partial cds 2682 2682 100% 0.0 99% KX216634.1 Select seq gb|KX806557.1| Zika virus isolate TS17-2016, complete genome 2682 2682 100% 0.0 99% KX806557.1 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 2682 2682 100% 0.0 99% KJ776791.2 Select seq gb|KX447520.1| Zika virus isolate 1_0016_PF polyprotein gene, partial cds 2682 2682 100% 0.0 99% KX447520.1 Select seq gb|KX447519.1| Zika virus isolate 1_0199_PF polyprotein gene, partial cds 2682 2682 100% 0.0 99% KX447519.1 Select seq gb|KX447518.1| Zika virus isolate 1_0117_PF polyprotein gene, partial cds 2682 2682 100% 0.0 99% KX447518.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 2682 2682 100% 0.0 99% KX447516.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 2682 2682 100% 0.0 99% KX447515.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 2682 2682 100% 0.0 99% KX447513.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 2682 2682 100% 0.0 99% KX447512.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 2682 2682 100% 0.0 99% KX447510.1 Select seq gb|KX576684.1| Zika virus vector pZIKV-ICD, complete sequence 2682 2682 100% 0.0 99% KX576684.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 2682 2682 100% 0.0 99% KX369547.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 2682 2682 100% 0.0 99% KX446950.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 2682 2682 100% 0.0 99% KX280026.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 2682 2682 100% 0.0 99% KX262887.1 Select seq gb|KX380262.1| Zika virus isolate MS10-2016 envelope protein gene, partial cds 2677 2677 100% 0.0 99% KX380262.1 Select seq gb|KX216638.1| Zika virus isolate ESS23-2015 envelope protein gene, partial cds 2677 2677 100% 0.0 99% KX216638.1 Select seq gb|KX216637.1| Zika virus isolate GS29-2016 envelope protein gene, partial cds 2677 2677 100% 0.0 99% KX216637.1 Select seq gb|KX216632.1| Zika virus isolate SIS58-2015 envelope protein gene, partial cds 2677 2677 100% 0.0 99% KX216632.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 2677 2677 100% 0.0 99% KX694534.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 2677 2677 100% 0.0 99% KX447514.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 2677 2677 100% 0.0 99% KX447511.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 2677 2677 100% 0.0 99% KX446951.1 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 2677 2677 100% 0.0 99% KX247632.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 2677 2677 100% 0.0 99% KX051563.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 2677 2677 100% 0.0 99% KU509998.3 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 2677 2677 100% 0.0 99% KU991811.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 2677 2677 100% 0.0 99% KU926309.1 Select seq gb|KU646828.1| Zika virus isolate Si322 polyprotein gene, partial cds 2677 2677 100% 0.0 99% KU646828.1 Select seq gb|KX380263.1| Zika virus isolate FS92-2016 envelope protein gene, partial cds 2673 2673 100% 0.0 99% KX380263.1 Select seq gb|KX216640.1| Zika virus isolate CKS63-2014 envelope protein gene, partial cds 2673 2673 100% 0.0 99% KX216640.1 Select seq gb|KX216636.1| Zika virus isolate SS27-2016 envelope protein gene, partial cds 2673 2673 100% 0.0 99% KX216636.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 2673 2673 100% 0.0 99% KX197205.1 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 2673 2673 100% 0.0 99% KX266255.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 2673 2673 100% 0.0 99% KU866423.2 Select seq gb|KU758871.1| Zika virus isolate 17170 polyprotein gene, partial cds 2673 2673 100% 0.0 99% KU758871.1 Select seq gb|KU758870.1| Zika virus isolate 17160 polyprotein gene, partial cds 2673 2673 100% 0.0 99% KU758870.1 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 2673 2673 100% 0.0 99% KX253996.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 2673 2673 100% 0.0 99% KX247646.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 2673 2673 100% 0.0 99% KX198135.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 2673 2673 100% 0.0 99% KX197192.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 2673 2673 100% 0.0 99% KX185891.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 2673 2673 100% 0.0 99% KX156776.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 2673 2673 100% 0.0 99% KX156775.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 2673 2673 100% 0.0 99% KX156774.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 2673 2673 100% 0.0 99% KX117076.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 2673 2673 100% 0.0 99% KU963796.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 2673 2673 100% 0.0 99% KU955589.1 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 2673 2673 100% 0.0 99% KU870645.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 2673 2673 100% 0.0 99% KU922960.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 2673 2673 100% 0.0 99% KU922923.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 2673 2673 100% 0.0 99% KU820899.2 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 2673 2673 100% 0.0 99% KU729218.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 2673 2673 100% 0.0 99% KU527068.1 Select seq gb|KU646827.1| Zika virus isolate Si323 polyprotein gene, partial cds 2673 2673 100% 0.0 99% KU646827.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 2673 2673 100% 0.0 99% KU647676.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 2673 2673 100% 0.0 99% KU321639.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 2670 2670 100% 0.0 99% KX766028.1 Select seq gb|KX216633.1| Zika virus isolate VS51-2016 envelope protein gene, partial cds 2668 2668 100% 0.0 99% KX216633.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 2668 2668 100% 0.0 99% KU820897.5 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 2668 2668 100% 0.0 99% KX766029.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 2668 2668 100% 0.0 99% KX447517.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 2668 2668 100% 0.0 99% KX520666.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 2668 2668 100% 0.0 99% KU758877.1 Select seq gb|KU758873.1| Zika virus isolate 18246 polyprotein gene, partial cds 2668 2668 100% 0.0 99% KU758873.1 Select seq gb|KU758869.1| Zika virus isolate 05211 polyprotein gene, partial cds 2668 2668 100% 0.0 99% KU758869.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 2668 2668 100% 0.0 99% KU937936.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 2668 2668 100% 0.0 99% KX087102.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 2668 2668 100% 0.0 99% KU940228.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 2668 2668 100% 0.0 99% KU497555.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 2668 2668 100% 0.0 99% KU501217.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 2668 2668 100% 0.0 99% KU501216.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 2668 2668 100% 0.0 99% KU365778.1 Select seq gb|KU312315.1| Zika virus isolate Z1106027 polyprotein gene, partial cds 2668 2668 100% 0.0 99% KU312315.1 Select seq gb|KU312314.1| Zika virus isolate Z1106031 polyprotein gene, partial cds 2668 2668 100% 0.0 99% KU312314.1 Select seq gb|KJ634273.1| Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds 2668 2668 100% 0.0 99% KJ634273.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 2664 2664 100% 0.0 99% KX702400.1 Select seq dbj|LC171327.1| Zika virus gene for polyprotein, partial cds, strain: ZIKV/Hu/Chiba/S36/2016 2664 2664 100% 0.0 99% LC171327.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 2664 2664 100% 0.0 99% KX548902.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 2664 2664 100% 0.0 99% KX377337.1 Select seq gb|KU758874.1| Zika virus isolate 20114 polyprotein gene, partial cds 2664 2664 100% 0.0 99% KU758874.1 Select seq gb|KU758868.1| Zika virus isolate 27229 polyprotein gene, partial cds 2664 2664 100% 0.0 99% KU758868.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 2664 2664 100% 0.0 99% KU926310.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 2664 2664 100% 0.0 99% KU820898.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 2664 2664 100% 0.0 99% KU740184.2 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 2664 2664 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 2664 2664 100% 0.0 99% KU853012.1 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 2664 2664 100% 0.0 99% KU761564.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 2664 2664 100% 0.0 99% KU707826.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 2664 2664 100% 0.0 99% KU501215.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 2664 2664 100% 0.0 99% KU365780.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 2664 2664 100% 0.0 99% KU365779.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 2664 2664 100% 0.0 99% KU365777.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 2659 2659 100% 0.0 99% KX673530.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 2659 2659 100% 0.0 99% KX601168.1 Link to comment Share on other sites More sharing options...
niman Posted September 17, 2016 Author Report Share Posted September 17, 2016 LOCUS KX827309 10526 bp RNA linear VRL 14-SEP-2016 DEFINITION Zika virus isolate ZKA-16-291 polyprotein gene, complete cds. ACCESSION KX827309 VERSION KX827309.1 GI:1063302141 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10526) AUTHORS Ng,Y.K., Mak,T.M., Phuah,S.P., Cui,L., Maurer-Stroh,S. and Lin,R.T.P. TITLE Genome sequences of local transmitted Zika viruses in Singapore in 2016 JOURNAL Unpublished REFERENCE 2 (bases 1 to 10526) AUTHORS Ng,Y.K., Mak,T.M., Phuah,S.P., Cui,L., Maurer-Stroh,S. and Lin,R.T.P. TITLE Direct Submission JOURNAL Submitted (07-SEP-2016) National Public Health Laboratory, Communicable Disease Division, Ministry of Health Singapore, 11 Jln Tan Tock Seng, Singapore 308433, Singapore COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10526 /organism="Zika virus" /mol_type="genomic RNA" /isolate="ZKA-16-291" /isolation_source="urine" /host="Homo sapiens" /db_xref="taxon:64320" /country="Singapore" /collection_date="28-Aug-2016" CDS 32..10303 /codon_start=1 /product="polyprotein" /protein_id="AOO19565.1" /db_xref="GI:1063302142" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRSDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAAHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSMVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKARLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRYGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPMLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST QVRYLGEEGSTPGVL" ORIGIN 1 attttggatt tggaaacgag agtttctggt catgaaaaac ccaaaaaaga aatccggagg 61 attccggatt gtcaatatgc taaaacgcgg agtagcccgt gtgagcccct ttgggggctt 121 gaagaggctg ccagccggac ttctgctggg tcatgggccc atcaggatgg tcttggcgat 181 tctagccttt ttgaggttca cggcaatcaa gccatcactg ggtctcatca atagatgggg 241 ttcagtgggg aaaaaagagg ctatggaaat aataaagaag ttcaagaaag atctggctgc 301 catgctgaga ataatcaatg ctaggaagga gaagaagaga cgaggcgcag atactagtgt 361 cggaattgtt ggcctcctgc tgaccacagc tatggcagcg gaggtcacta gacgtgggag 421 tgcatactat atgtacttgg acagaagcga tgctggggag gccatatctt ttccaaccac 481 actggggatg aataagtgtt atatacagat catggatctt ggacacatgt gtgatgccac 541 catgagctat gaatgcccta tgctggatga gggggtagaa ccagatgacg tcgattgttg 601 gtgcaacacg acgtcaactt gggttgtgta cggaacctgc catcacaaaa aaggtgaagc 661 acggagatct agaagagctg tgacgctccc ctcccattcc actaggaagc tgcaaacgcg 721 gtcgcagacc tggttggagt caagagaata cacaaagcac ttgattagag tcgaaaattg 781 gatattcagg aaccctggct tcgcgttagc agcagctgcc atcgcttggc ttttgggaag 841 ctcaacgagc caaaaagtca tatacttggt catgatactg ctgattgccc cggcatacag 901 catcaggtgc ataggagtca gcaataggga ctttgtggaa ggtatgtcag gtgggacttg 961 ggttgatgtt gtcttggaac atggaggttg tgtcaccgta atggcacagg acaaaccgac 1021 tgtcgacata gagctggtta caacaacagt cagcaacatg gcggaggtaa gatcctactg 1081 ctatgaggca tcaatatcgg acatggcttc ggacagccgc tgcccaacac aaggtgaagc 1141 ctaccttgac aagcaatcag atacccaata tgtctgcaaa agaacgttag tggacagagg 1201 ctggggaaat ggatgtggac tttttggaaa agggagcctg gtgacatgcg ctaagtttgc 1261 atgctccaag aaaatgaccg ggaagagcat ccagccagag aatctggagt accggataat 1321 gctgtcagtc catggctccc agcacagtgg gatgatcgtt aatgacacag gacatgaaac 1381 tgatgagaat agagcgaagg ttgagataac gcccaattca ccaagagccg aagccaccct 1441 ggggggtttt ggaagcctag gacttgattg tgaaccgagg acaggccttg acttttcaga 1501 tttgtattac ttgactatga ataacaagca ctggttggtc cacaaggagt ggttccacga 1561 cattccatta ccttggcacg ctggggcaga caccggaact ccacactgga acaacaaaga 1621 agcactggta gagttcaagg acgcacatgc caaaaggcaa actgtcgtgg ttctagggag 1681 tcaagaagga gcagttcaca cggcccttgc tggagctctg gaggctgaga tggatggtgc 1741 aaagggaagg ctgtcctctg gccacttgaa atgtcgcctg aaaatggaca aacttagatt 1801 gaagggcgtg tcatactcct tgtgtaccgc agcgttcaca ttcaccaaga tcccggctga 1861 aacactgcac gggacagtca cagtggaggt acagtacgca gggacagatg gaccctgcaa 1921 ggttccagct cagatggcgg tggacatgca aactctgacc ccagttggga ggttgataac 1981 cgctaacccc gtaatcactg aaagcactga gaactctaag atgatgctgg aacttgatcc 2041 accatttggg gactcttaca ttgtcatagg agtcggggag aagaagatca cccaccactg 2101 gcacaggagt ggcagtacca ttggaaaagc atttgaagcc actgtgagag gtgccaagag 2161 aatggcagtc ttgggagaca cagcctggga ctttggatca gttggaggcg ctctcaactc 2221 attgggcaag ggcatccatc aaatttttgg agcagctttc aaatcattgt ttggaggaat 2281 gtcctggttc tcacaaattc tcattggaac gttgctgatg tggttgggcc tgaacacaaa 2341 gaatggatct atttccctta tgtgcttggc cttaggggga gtgttgatct tcttatccac 2401 agccgtctct gctgatgtgg ggtgctcggt ggacttctca aagaaggaaa cgagatgcgg 2461 tacaggggtg ttcgtctata acgacgttga agcctggagg gacaggtaca agtaccatcc 2521 tgactccccc cgtagattgg cagcagcagt caagcaagcc tgggaagatg gtatctgtgg 2581 gatctcctct gtttcaagaa tggaaaacat catgtggaga tcagtagaag gggagctcaa 2641 cgcaatcctg gaagaaaatg gagttcaact gacggtcgtt gtgggatctg taaaaaaccc 2701 catgtggaga ggtccacaga gactgcccgt gcctgtgaac gagctgcccc acggctggaa 2761 ggcttggggg aaatcgtact tcgtcagagc agcaaagaca aataacagct ttgtcgtgga 2821 tggtgacaca ctgaaggaat gcccactcaa acatagagca tggaacagct ttcttgtgga 2881 ggatcatggg ttcggggtat ttcacactag tgtctggctc aaggttagag aagattattc 2941 attagagtgt gatcctgccg ttattggaac agctgttaag ggaaaggagg ctgcacacag 3001 tgatctaggc tactggattg agagtgagaa gaatgacaca tggaggctga agagggccca 3061 cctgatcgag atgaaaacat gtgaatggcc aaagtcccac acattgtgga cagatggaat 3121 agaagagagt gatctgatca tacccaagtc tttagctggg ccactcagcc atcacaacac 3181 cagagagggc tacaggaccc aaatgaaagg gccatggcac agtgaagagc ttgaaattcg 3241 gtttgaggaa tgcccaggca ctaaggtcca cgtggaggaa acatgtggaa caagaggacc 3301 gtctctgaga tcaaccactg caagcggaag ggtgatcgag gaatggtgct gcagggagtg 3361 cacaatgccc ccactgtcgt tccgggctaa agatggctgt tggtatggaa tggagataag 3421 gcccaggaaa gaaccagaaa gtaacttagt aaggtcaatg gtgactgcag gatcaactga 3481 tcacatggat cacttctccc ttggagtgct tgtgattctg ctcatggtgc aggaagggct 3541 gaagaagaga atgaccacaa agatcatcat aagcacatca atggcagtgc tggtagctat 3601 gatcctggga ggattttcaa tgagtgacct ggctaagctt gcaattttga tgggtgccac 3661 cttcgcggaa atgaacactg gaggagatgt agctcatctg gcgctgatag cggcattcaa 3721 agtcagacca gcgttgctgg tatctttcat cttcagagct aattggacac cccgtgaaag 3781 catgctgctg gccttggcct cgtgtctttt gcaaactgcg atttccgcct tggaaggcga 3841 cctgatggtt ctcatcaatg gttttgctct ggcctggttg gcaatacgag cgatggttgt 3901 tccacgcact gacaacatca ccttggcaat cctggctgct ctgacaccac tggcccgggg 3961 cacactgctt gtggcgtgga gagcaggcct tgctacttgc ggggggttca tgctcctctc 4021 tctgaaggga aaaggcagtg tgaagaagaa cttaccattt gtcatggccc tgggactaac 4081 cgctgtgagg ctagtcgacc ccatcaacgt ggtgggactg ctgttgctca caaggagtgg 4141 gaagcggagc tggcccccta gcgaagtact cacagctgtt ggcctgatat gcgcattggc 4201 tggagggttc gccaaggcag atatagagat ggctgggccc atggccgcgg ttggtctgct 4261 aattgtcagt tacgtggtct caggaaagag tgtggacatg tacattgaaa gagcaggtga 4321 catcacatgg gaaaaagatg cggaagtcac tggaaacagt ccccggctcg atgtggcact 4381 agatgagagt ggtgatttct ccctggtgga ggatgacggt ccccccatga gagagatcat 4441 acttaaagtg gtcctgatga ccatctgtgg catgaaccca atagccatac cctttgcagc 4501 tggagcgtgg tacgtatacg tgaagactgg aaaaaggagt ggtgctctat gggatgtgcc 4561 tgctcccaag gaagtaaaaa agggggagac cacagatgga gtgtacagag taatgactcg 4621 tagactgcta ggttcaacac aagttggagt gggagtcatg caagaggggg tctttcacac 4681 tatgtggcac gtcacaaaag gatccgcgct gagaagcggt gaagggagac ttgatccata 4741 ctggggagat gtcaagcagg atctggtgtc atactgtggt ccatggaagc tagatgccgc 4801 ctgggacggg cacagcgagg tgcagctctt ggccgtgccc cccggagaga gagcgaggaa 4861 catccagact ctgcccggaa tatttaagac aaaggatggg gacattggag cggttgcgct 4921 ggactaccca gcaggaactt caggatctcc aatcctagac aagtgtggga gagtgatagg 4981 actctatggc aatggggtcg tgatcaaaaa tgggagttat gttagtgcca tcacccaagg 5041 gaggagggag gaagagactc ctgttgagtg cttcgagcct tcgatgctga agaagaagca 5101 gctaactgtc ttagacttgc atcctggagc tgggaaaacc aggagagttc ttcctgaaat 5161 agtccgtgaa gccataaaag caagactccg tactgtgatc ttagctccaa ctagggttgt 5221 cgctgctgaa atggaggaag cccttagagg gcttccagtg cgttatatga caacagcagt 5281 caatgtcacc cactctggga cagaaatcgt tgacttaatg tgccatgcca ccttcacttc 5341 acgtctacta cagccaatca gagtccccaa ctataatctg tatattatgg atgaggccca 5401 cttcacagat ccctcaagta tagcagcaag aggatacatt tcaacaaggg ttgagatggg 5461 cgaggcggct gccatcttca tgaccgccac gccaccagga acccgtgacg catttccgga 5521 ctccaactca ccaattatgg acaccgaagt ggaagtcccg gagagagcct ggagctcagg 5581 ctttgattgg gtgacggacc attctggaaa aacagtttgg tttgttccaa gcgtgaggaa 5641 cggcaatgag atcgcagctt gtctgacgaa ggctggaaaa cgggtcatac agctcagcag 5701 aaagactttt gagacagagt tccagaaaac aaaacatcaa gagtgggact ttgtcgtgac 5761 aactgacatt tcagagatgg gcgccaactt taaagctgac cgtgtcatag attccaggag 5821 atgcctaaag ccggtcatac ttgatggcga gagagtcatt ctggctggac ccatgcctgt 5881 cacacatgcc agcgctgccc agaggagggg gcgcataggc aggaatccca acaaacctgg 5941 agatgagtat ctgtatggag gtgggtgcgc agagactgat gaagaccatg cacactggct 6001 tgaagcaaga atgctccttg acaatatcta cctccaagat ggcctcatag cctcgctcta 6061 tcgacctgag gccgacaaag tagcagccat tgagggagag ttcaagctta ggacggagca 6121 aaggaagacc tttgtggaac tcatgaaaag aggagatctt cctgtttggc tggcctatca 6181 ggttgcatct gccggaataa cctacacaga tagaagatgg tgctttgatg gcacgaccaa 6241 caacaccata atggaagaca gtgtgccggc agaggtgtgg accagatacg gagagaaaag 6301 agtgctcaaa ccgaggtgga tggacgccag agtctgttca gatcatgcgg ccctgaagtc 6361 attcaaggag tttgccgctg ggaaaagagg agcggctttt ggagtgatgg aagccctggg 6421 aacactgccg ggacacatga cagagagatt ccaggaagcc attgacaacc tcgctgtgct 6481 catgcgggca gagactggaa gcagacctta caaagccgcg gcggcccaat tgccggagac 6541 cctagagacc attatgcttt tggggttgct gggaacagtc tcgctgggaa tctttttcgt 6601 cttgatgcgg aacaagggca tagggaagat gggctttgga atggtgactc ttggggccag 6661 cgcatggctc atgtggctct cggaaattga gccagccaga attgcatgtg tcctcattgt 6721 tgtgttccta ttgctggtgg tgctcatacc tgagccagaa aagcaaagat ctccccagga 6781 caaccaaatg gcaatcatca tcatggtagc agtaggtctt ctgggcttga ttaccgccaa 6841 tgaactcgga tggttggaga gaacaaagag tgacctaagc catctaatgg gaaggagaga 6901 ggagggggca accataggat tctcaatgga cattgacctg cggccagcct cagcttgggc 6961 catctatgct gccctgacaa ctttcattac cccagccgtc caacatgcag tgaccacttc 7021 atacaacaac tactccttaa tggcgatggc cacgcaagct ggagtgttgt ttggtatggg 7081 caaagggatg ccattctacg catgggactt tggagtcccg ctgctaatga taggttgcta 7141 ctcacaatta acacccctga ccctaatagt ggccatcatt ttgctcgtgg cgcactacat 7201 gtacttgatc ccagggctgc aggcagcagc tgcgcgtgct gcccagaaga gaacggcagc 7261 tggcatcatg aagaaccctg ttgtggatgg aatagtggtg actgacattg acacaatgac 7321 aattgacccc caagtggaga aaaagatggg acaggtgcta ctcatagcag tagccgtctc 7381 cagcgccata ctgtcgcgga ccgcctgggg gtggggggag gctggggccc tgatcacagc 7441 tgcaacttcc actttgtggg aaggctctcc gaacaagtac tggaactcct ctacagccac 7501 ttcactgtgt aacattttta ggggaagtta cttggctgga gcttctctaa tctacacagt 7561 aacaagaaac gctggtttgg tcaagagacg tgggggtgga acaggagaga ccctgggaga 7621 gaaatggaag gcccgcttga accagatgtc ggccctggag ttctactcct acaaaaagtc 7681 aggcatcacc gaggtgtgca gagaagaggc ccgccgcgcc ctcaaggacg gtgtggcaac 7741 gggaggccat gctgtgtccc gaggaagtgc aaagctgaga tggttggtgg agcggggata 7801 cctgcagccc tatggaaagg tcattgatct tggatgtggc agagggggct ggagttacta 7861 cgccgccacc atccgcaaag ttcaagaagt gaaaggatac acaaaaggag gccctggtca 7921 tgaagaaccc atgttggtgc aaagctatgg gtggaacata gtccgtctta agagtggggt 7981 ggacgtcttt catatggcgg ctgagccgtg tgacacgttg ctgtgtgaca taggtgagtc 8041 atcatctagt cctgaagtgg aagaagcacg gacgctcaga gtcctctcca tggtggggga 8101 ttggcttgaa aaaagaccag gagccttttg tataaaagtg ttgtgcccat acaccagcac 8161 tatgatggaa accctggagc gactgcagcg taggtatggg ggaggactgg tcagagtgcc 8221 actctcccgc aactcaacac atgagatgta ctgggtctct ggagcgaaaa gcaacaccat 8281 aaaaagtgtg tccaccacga gccagctcct cttggggcgc atggacgggc ccaggaggcc 8341 agtgaaatat gaggaggatg tgaatctcgg ctctggcacg cgggctgtgg taagctgcgc 8401 tgaagctccc aacatgaaga tcattggtaa ccgcattgaa aggatccgca gtgagcacgc 8461 ggaaacgtgg ttctttgacg agaaccaccc atataggaca tgggcttacc atggaagcta 8521 tgaggccccc acacaagggt cagcgtcctc tctaataaac ggggttgtca ggctcctgtc 8581 aaaaccctgg gatgtggtga ctggagtcac aggaatagcc atgaccgaca ccacaccgta 8641 tggtcagcaa agagttttca aggaaaaagt ggacactagg gtgccagacc cccaagaagg 8701 cactcgtcag gttatgagca tggtctcttc ctggttgtgg aaagagctag gcaaacacaa 8761 acggccacga gtctgtacca aagaagagtt catcaacaag gttcgtagca atgcagcatt 8821 aggggcaata tttgaagagg aaaaagagtg gaagactgca gtggaagctg tgaacgatcc 8881 aaggttctgg gctctagtgg acaaggaaag agagcaccac ctgagaggag agtgccagag 8941 ctgtgtgtac aacatgatgg gaaaaagaga aaagaaacaa ggggaatttg gaaaggccaa 9001 gggcagccgc gccatctggt atatgtggct aggggctaga tttctagagt tcgaagccct 9061 tggattcttg aacgaggatc actggatggg gagagagaac tcaggaggtg gtgttgaagg 9121 gctgggatta caaagactcg gatatgtcct agaagagatg agtcgcatac caggaggaag 9181 gatgtatgca gatgacactg ctggctggga cacccgcatc agcaggtttg atctggagaa 9241 tgaagctcta atcaccaacc aaatggagaa agggcacagg gccttggcat tggccataat 9301 caagtacaca taccaaaaca aagtggtaaa ggtccttaga ccagctgaaa aagggaagac 9361 agtgatggac attatttcaa gacaagacca aagggggagc ggacaagttg tcacttacgc 9421 tctcaacaca tttaccaacc tagtggtgca actcattcgg aatatggagg ctgaggaagt 9481 tctagagatg caagacttgt ggctgctgcg gaggtcagag aaagtgacca actggttgca 9541 gagcaacgga tgggataggc tcaaacgaat ggcagtcagt ggagatgatt gcgttgtgaa 9601 gccaattgat gataggtttg cacatgccct caggttcttg aatgatatgg ggaaagttag 9661 gaaggacaca caagaatgga aaccctcaac tggatgggac aactgggaag aagttccgtt 9721 ttgctcccac catttcaaca agctccatct caaggacggg aggtccattg tggttccctg 9781 ccgccaccaa gatgaactga ttggccgggc ccgcgtctct ccaggggcgg gatggagcat 9841 ccgggagact gcttgcctag caaaatcata tgcgcagatg tggcagctcc tttatttcca 9901 cagaagggac ctccgactga tggccaatgc catttgttca tctgtgccag ttgactgggt 9961 tccaactggg agaactacct ggtcaatcca tggaaaggga gaatggatga ccactgaaga 10021 catgcttgtg gtgtggaaca gagtgtggat tgaggagaac gaccacatgg aagacaagac 10081 cccagttacg aaatggacag acattcccta tttgggaaaa agggaagact tatggtgtgg 10141 atctctcata gggcacagac cgcgcaccac ctgggctgag aacattaaaa acacagtcaa 10201 catggtgcgc agaatcatag gtgatgaaga aaagtacatg gactacctat ccacccaagt 10261 tcgctacttg ggtgaagaag ggtctacacc tggagtgctg taagcaccaa tcttagtgtt 10321 gtcaggcctg ctagtcagcc acagcttggg gaaagctgtg cagcctgtga cccccccagg 10381 agaagctggg aaaccaagcc catagtcagg ccgagaacgc catggcacgg aagaagccat 10441 gctgcctgtg agcccctcag aggacactga gtcaaaaaac cccacgcgct tggaggcgca 10501 ggatgggaaa agaaggtggc gacctt Link to comment Share on other sites More sharing options...
niman Posted September 17, 2016 Author Report Share Posted September 17, 2016 Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KX827309.1| Zika virus isolate ZKA-16-291 polyprotein gene, complete cds 18525 18525 100% 0.0 100% KX827309.1 Select seq gb|KX813683.1| Zika virus isolate ZKA-16-097 polyprotein gene, complete cds 18493 18493 100% 0.0 99% KX813683.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 18236 18236 100% 0.0 99% KX447512.1 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 18231 18231 100% 0.0 99% KX447509.1 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 18227 18227 100% 0.0 99% KJ776791.2 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 18227 18227 100% 0.0 99% KX369547.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 18222 18222 100% 0.0 99% KX447515.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 18218 18218 100% 0.0 99% KX447514.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 18218 18218 100% 0.0 99% KX447513.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 18213 18213 100% 0.0 99% KX447516.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 18213 18213 100% 0.0 99% KX447511.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 18209 18209 100% 0.0 99% KX447510.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 18191 18191 100% 0.0 99% KX447517.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 18182 18182 100% 0.0 99% KU509998.3 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 18177 18177 100% 0.0 99% KU991811.1 Select seq gb|KX806557.1| Zika virus isolate TS17-2016, complete genome 18173 18173 100% 0.0 99% KX806557.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 18173 18173 100% 0.0 99% KX280026.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 18173 18173 100% 0.0 99% KX051563.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 18159 18159 100% 0.0 99% KX197205.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 18159 18159 100% 0.0 99% KU321639.1 Select seq gb|KX811222.1| Zika virus isolate Brazil_2015_MG, complete genome 18155 18155 100% 0.0 99% KX811222.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 18155 18155 100% 0.0 99% KX198135.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 18155 18155 100% 0.0 99% KU729218.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 18150 18150 100% 0.0 99% KU707826.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 18150 18150 100% 0.0 99% KU365779.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 18146 18146 100% 0.0 99% KX262887.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 18146 18146 100% 0.0 99% KX247646.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 18146 18146 100% 0.0 99% KX197192.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 18146 18146 100% 0.0 99% KU926309.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 18141 18141 100% 0.0 99% KX185891.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 18141 18141 100% 0.0 99% KX117076.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 18141 18141 100% 0.0 99% KU963796.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 18141 18141 100% 0.0 99% KU647676.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 18137 18137 100% 0.0 99% KU820897.5 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 18137 18137 100% 0.0 99% KX694534.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 18137 18137 100% 0.0 99% KU758877.1 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 18137 18137 100% 0.0 99% KX253996.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 18137 18137 100% 0.0 99% KX156776.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 18137 18137 100% 0.0 99% KX087102.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 18137 18137 100% 0.0 99% KU955589.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 18137 18137 100% 0.0 99% KU820899.2 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 18137 18137 100% 0.0 99% KU501217.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 18137 18137 100% 0.0 99% KU365780.1 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 18134 18134 100% 0.0 99% KX266255.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 18134 18134 99% 0.0 99% KU497555.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 18132 18132 100% 0.0 99% KU866423.2 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 18132 18132 100% 0.0 99% KX156774.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 18132 18132 100% 0.0 99% KU940228.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 18132 18132 100% 0.0 99% KU527068.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 18132 18132 100% 0.0 99% KU501216.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 18132 18132 100% 0.0 99% KU365777.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 18128 18128 100% 0.0 99% KX156775.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 18128 18128 100% 0.0 99% KU926310.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 18128 18128 100% 0.0 99% KU365778.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 18123 18123 100% 0.0 99% KU922960.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 18123 18123 100% 0.0 99% KU729217.2 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 18119 18119 100% 0.0 99% KX702400.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 18119 18119 100% 0.0 99% KX548902.1 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 18119 18119 100% 0.0 99% KX247632.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 18119 18119 100% 0.0 99% KU922923.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 18119 18119 100% 0.0 99% KU501215.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 18119 18119 100% 0.0 99% KU312312.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 18114 18114 100% 0.0 99% KX601168.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 18114 18114 100% 0.0 99% KX520666.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 18114 18114 100% 0.0 99% KX446950.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 18114 18114 100% 0.0 99% KX087101.2 Select seq gb|KX856011.1| Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome 18110 18110 100% 0.0 99% KX856011.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 18110 18110 100% 0.0 99% KX446951.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 18110 18110 100% 0.0 99% KX377337.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 18110 18110 100% 0.0 99% KU937936.1 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 18105 18105 100% 0.0 99% KU870645.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 18103 18103 100% 0.0 99% KX766028.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 18101 18101 100% 0.0 99% KU820898.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 18101 18101 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 18099 18099 100% 0.0 99% KU853012.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 18096 18096 100% 0.0 99% KX056898.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 18096 18096 100% 0.0 99% KU955590.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 18092 18092 100% 0.0 99% KU740184.2 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 18092 18092 100% 0.0 99% KU761564.1 Select seq gb|KX842449.1| Zika virus isolate ZIKV/Human/USA/2016/ZF10.UR-010 polyprotein gene, complete cds 18083 18083 100% 0.0 99% KX842449.1 Select seq gb|KX838904.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM1-7501 polyprotein gene, complete cds 18083 18083 100% 0.0 99% KX838904.1 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 18083 18083 100% 0.0 99% KX766029.1 Select seq gb|KX838905.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM2-7719 polyprotein gene, complete cds 18078 18078 100% 0.0 99% KX838905.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 18078 18078 100% 0.0 99% KX673530.1 Select seq gb|KX832731.1| Zika virus isolate ZIKV/Human/USA/2016/ZL2.SA-Hu0015 polyprotein gene, complete cds 18074 18074 100% 0.0 99% KX832731.1 Select seq gb|KU681081.3| Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome 18069 18069 100% 0.0 99% KU681081.3 Select seq gb|KX838906.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM3-7729 polyprotein gene, complete cds 18060 18060 100% 0.0 99% KX838906.1 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 18038 18038 99% 0.0 99% KU940224.1 Select seq gb|KX694532.1| Zika virus strain ZIKV/Homo sapiens/THA/PLCal_ZV/2013, complete genome 17948 17948 100% 0.0 99% KX694532.1 Select seq gb|KU744693.1| Zika virus isolate VE_Ganxian, complete genome 17948 17948 100% 0.0 99% KU744693.1 Select seq gb|KU955593.1| Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome 17777 17777 100% 0.0 98% KU955593.1 Select seq gb|JN860885.1| Zika virus isolate FSS13025 polyprotein gene, partial cds 17775 17775 99% 0.0 98% JN860885.1 Select seq gb|KF993678.1| Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds 17715 17715 98% 0.0 99% KF993678.1 Select seq gb|EU545988.1| Zika virus polyprotein gene, complete cds 17643 17643 100% 0.0 98% EU545988.1 Select seq gb|KU681082.3| Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome 17470 17470 100% 0.0 98% KU681082.3 Select seq gb|KX601167.1| Zika virus strain ZIKV/Aedes sp./MYS/P6-740/1966, complete genome 16487 16487 100% 0.0 96% KX601167.1 Select seq gb|KX694533.1| Zika virus strain ZIKV/Aedes aegypti/MYS/P6-740/1966, complete genome 16478 16478 100% 0.0 96% KX694533.1 Select seq gb|HQ234499.1| Zika virus isolate P6-740 polyprotein gene, partial cds 16478 16478 99% 0.0 96% HQ234499.1 Select seq gb|KX377336.1| Zika virus strain P6-740, complete genome 16473 16473 100% 0.0 96% KX377336.1 Select seq gb|KX447518.1| Zika virus isolate 1_0117_PF polyprotein gene, partial cds 16072 16072 88% 0.0 99% KX447518.1 Link to comment Share on other sites More sharing options...
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