Full Zika Sequences From Florida Mosquitoes

[niman]

Scripps Clinic and Research Foundation has released full Zika sequences from recent Florida mosquitoes and cases.

Edited September 15, 2016 by niman

[niman]

Zika virus isolate ZIKV/Human/USA/2016/ZL2.SA-Hu0015 polyprotein gene, complete cds

10,467 bp linear RNA

Accession:

 

KX832731.1

 

GI:

 

1063797019

GenBankFASTAGraphics

Select item 10637970212.

Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM1-7501 polyprotein gene, complete cds

10,524 bp linear RNA

Accession:

 

KX838904.1

 

GI:

 

1063797021

GenBankFASTAGraphics

Select item 10637970233.

Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM2-7719 polyprotein gene, complete cds

10,475 bp linear RNA

Accession:

 

KX838905.1

 

GI:

 

1063797023

GenBankFASTAGraphics

Select item 10637970254.

Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM3-7729 polyprotein gene, complete cds

10,610 bp linear RNA

Accession:

 

KX838906.1

 

GI:

 

1063797025

GenBankFASTAGraphics

Select item 10639069975.

Zika virus isolate ZIKV/Human/USA/2016/ZF10.UR-010 polyprotein gene, complete cds

10,388 bp linear RNA

Accession:

 

KX842449.1

 

GI:

 

1063906997

GenBankFASTAGraphics

[niman]

LOCUS       KX838906               10610 bp    RNA     linear   VRL 14-SEP-2016
DEFINITION  Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM3-7729 polyprotein
            gene, complete cds.
ACCESSION   KX838906
VERSION     KX838906.1  GI:1063797025
DBLINK      BioProject: PRJNA342539
KEYWORDS    .
SOURCE      Zika virus
  ORGANISM  Zika virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Flaviviridae; Flavivirus.
REFERENCE   1  (bases 1 to 10610)
  AUTHORS   Grubaugh,N., Paul,L., Gangavarupu,K., Oliveira,G.,
            Robles-Sikisaka,R., Michael,S., Isern,S. and Andersen,K.
  TITLE     Zika virus sequences from Florida, USA, 2016
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 10610)
  AUTHORS   Grubaugh,N., Paul,L., Gangavarupu,K., Oliveira,G.,
            Robles-Sikisaka,R., Michael,S., Isern,S. and Andersen,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-SEP-2016) Department of Immunology and Microbial
            Science, The Scripps Research Institute, 10550 North Torrey Pines
            Road, IMM-210, La Jolla, CA 92037, USA
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: NovoAlign v. V3.04
            Coverage              :: 160,000
            Sequencing Technology :: Illumina
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..10610
                     /organism="Zika virus"
                     /mol_type="genomic RNA"
                     /isolate="ZIKV/Aedes_aegypti/USA/2016/ZM3-7729"
                     /isolation_source="pool of 15 adult mosquitoes"
                     /host="Aedes aegypti"
                     /db_xref="taxon:64320"
                     /country="USA: Miami, Florida"
                     /collection_date="23-Aug-2016"
     CDS             82..10353
                     /codon_start=1
                     /product="polyprotein"
                     /protein_id="AOO53984.1"
                     /db_xref="GI:1063797026"
                     /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI
                     RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK
                     RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI
                     MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT
                     LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV
                     IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE
                     LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG
                     NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET
                     DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF
                     HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE
                     MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG
                     TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG
                     EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG
                     AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC
                     SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR
                     MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK
                     SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE
                     CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI
                     EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR
                     GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSVVTA
                     GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA
                     ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT
                     AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL
                     ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRNGKRSWPPSE
                     VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD
                     AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY
                     VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW
                     HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN
                     IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT
                     QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP
                     TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY
                     IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV
                     PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT
                     KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR
                     RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK
                     VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM
                     EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL
                     PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV
                     LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP
                     QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA
                     SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL
                     LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV
                     VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP
                     NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ
                     MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK
                     VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH
                     MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM
                     ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP
                     VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG
                     SYEAPTQGSASSLVNGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD
                     PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV
                     EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA
                     RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD
                     TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ
                     DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR
                     LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH
                     FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR
                     DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTIEDMLVVWNRVWIEENDHMEDKT
                     PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGEEEKYMDYLST
                     QVRYLGEEGSTPGVL"
ORIGIN      
        1 gcgacagttc gagtttgaag cgaaagctag caacagtatc aacaggtttt attttggatt
       61 tggaaacgag agtttctggt catgaaaaac ccaaaaaaga aatccggagg attccggatt
      121 gtcaatatgc taaaacgcgg agtagcccgt gtgagcccct ttgggggctt gaagaggctg
      181 ccagccggac ttctgctggg tcatgggccc atcaggatgg tcttggcgat tctagccttt
      241 ttgagattca cggcaatcaa gccatcactg ggtctcatca atagatgggg ttcagtgggg
      301 aaaaaagagg ctatggaaat aataaagaag ttcaagaaag atctggctgc catgctgaga
      361 ataatcaatg ctaggaagga gaagaagaga cgaggcgcag atactagtgt cggaattgtt
      421 ggcctcctgc tgaccacagc tatggcagcg gaggtcacta gacgtgggag tgcatactac
      481 atgtacttgg acagaaacga tgctggggag gccatatctt ttccaaccac attggggatg
      541 aataagtgtt atatacagat catggatctt ggacacatgt gtgatgccac catgagctat
      601 gaatgcccta tgctggatga gggggtggaa ccagatgacg tcgattgttg gtgcaacacg
      661 acgtcaactt gggttgtgta cggaacctgc catcacaaaa aaggtgaagc acggagatct
      721 agaagagctg tgacgctccc ctcccattcc actaggaagc tgcaaacgcg gtcgcaaacc
      781 tggttggaat caagagaata cacaaagcac ttgattagag tcgaaaattg gatattcagg
      841 aaccctggct tcgcgttagc agcagctgcc atcgcttggc ttttgggaag ctcaacgagc
      901 caaaaagtca tatacttggt catgatactg ctgattgccc cggcatacag catcaggtgc
      961 ataggagtca gcaataggga ctttgtggaa ggtatgtcag gtgggacttg ggttgatgtt
     1021 gtcttggaac atggaggttg tgtcaccgta atggcacagg acaaaccgac tgtcgacata
     1081 gagctggtta caacaacagt cagcaacatg gcggaggtaa gatcctactg ctatgaggca
     1141 tcaatatcag acatggcttc ggacagccgc tgcccaacac aaggtgaagc ctaccttgac
     1201 aagcaatcag acactcaata tgtctgcaaa agaacgttag tggacagagg ctggggaaat
     1261 ggatgtggac tttttggcaa agggagcctg gtgacatgcg ctaagtttgc atgctccaag
     1321 aaaatgaccg ggaagagcat ccagccagag aatctggagt accggataat gctgtcagtt
     1381 catggctccc agcacagtgg gatgatcgtt aatgacacag gacatgaaac tgatgagaat
     1441 agagcgaagg ttgagataac gcccaattca ccaagagccg aagccaccct ggggggtttt
     1501 ggaagcctag gacttgattg tgaaccgagg acaggccttg acttctcaga tttgtattac
     1561 ttgactatga ataacaagca ctggttggtt cacaaggagt ggttccacga cattccatta
     1621 ccttggcacg ctggggcaga caccggaact ccacactgga acaacaaaga agcactggta
     1681 gagttcaagg acgcacatgc caaaaggcaa actgtcgtgg ttctagggag tcaagaagga
     1741 gcagttcaca cggcccttgc tggagctctg gaggctgaga tggatggtgc aaagggaagg
     1801 ctgtcctctg gccacttgaa atgtcgcctg aaaatggata aacttagatt gaagggcgtg
     1861 tcatactcct tgtgtaccgc agcgttcaca ttcaccaaga tcccggctga aacactgcac
     1921 gggacagtca cagtggaggt acagtacgca gggacagatg gaccttgcaa ggttccagct
     1981 cagatggcgg tggacatgca aactctgacc ccagttggga ggttgataac cgccaacccc
     2041 gtaatcactg aaagcactga gaactctaag atgatgctgg aacttgatcc accatttggg
     2101 gactcttaca ttgtcatagg agtcggggag aagaagatca cccaccactg gcacaggagt
     2161 ggcagcacca ttggaaaagc atttgaagcc actgtgagag gtgccaagag aatggcagtc
     2221 ttgggagaca cagcctggga ctttggatca gttggaggcg ctctcaactc attgggcaag
     2281 ggcatccatc aaatttttgg agcagctttc aaatcattgt ttggaggaat gtcctggttc
     2341 tcacaaatcc tcattggaac gttgctgatg tggttgggtc tgaacacaaa gaatggatct
     2401 atttccctca tgtgcttggc cttaggggga gtgctgatct tcttatccac agccgtctct
     2461 gctgatgtgg ggtgctcggt ggacttctca aagaaggaga cgagatgcgg tacaggggtg
     2521 ttcgtctata acgacgttga agcctggagg gacaggtaca agtaccatcc tgactccccc
     2581 cgtagattgg cagcagcagt caagcaagcc tgggaagatg gtatctgcgg gatctcctct
     2641 gtttcaagaa tggaaaacat catgtggaga tcagtagaag gggagctcaa tgcaatcctg
     2701 gaagagaatg gagttcaact gacggtcgtt gtgggatctg taaaaaaccc catgtggaga
     2761 ggtccacaga gattgcccgt gcctgtgaac gagctgcccc acggctggaa ggcttggggg
     2821 aaatcgtact tcgttagagc agcaaagaca aataacagct ttgtcgtgga tggtgacaca
     2881 ctgaaggaat gcccactcaa acatagagca tggaacagct ttcttgtgga ggatcatggg
     2941 ttcggggtat tccacactag tgtctggctc aaggttagag aagattattc attagagtgt
     3001 gatccagccg ttattggaac agctgttaag ggaaaggagg ctgtacacag tgatctaggc
     3061 tactggattg agagtgagaa gaatgacaca tggaggctga agagggccca tctgatcgag
     3121 atgaaaacat gtgaatggcc aaagtcccac acattgtgga cagatggaat agaagagagt
     3181 gatctgatca tacccaagtc tttagctggg ccactcagcc atcacaatac cagagagggc
     3241 tacaggaccc aaatgaaagg gccatggcac agtgaagagc ttgaaattcg gtttgaggaa
     3301 tgcccaggca ctaaggtcca cgtggaggaa acatgtggaa caagaggacc atctctgaga
     3361 tcaaccactg caagcggaag ggtgatcgag gaatggtgct gcagggagtg cacaatgccc
     3421 ccactgtcgt tccgggctaa agatggctgt tggtatggaa tggagataag gcccaggaaa
     3481 gaaccagaaa gcaacttagt aaggtcagtg gtgactgcag gatcaactga tcacatggat
     3541 cacttctccc ttggagtgct tgtgattctg ctcatggtgc aggaagggct gaagaagaga
     3601 atgaccacaa agatcatcat aagcacatca atggcagtgc tggtagctat gatcctggga
     3661 ggattttcaa tgagtgacct ggctaagctt gcaattttga tgggtgccac cttcgcggaa
     3721 atgaacactg gaggagatgt agctcatctg gcgctgatag cggcattcaa agtcagacca
     3781 gcgttgctgg tatctttcat cttcagagct aattggacac cccgtgaaag catgctgctg
     3841 gccttggcct cgtgtctttt gcaaactgcg atctccgcct tggaaggcga cctgatggtt
     3901 ctcatcaatg gttttgcttt ggcctggttg gcaatacgag cgatggttgt tccacgcact
     3961 gataacatca ccttggcaat cctggctgct ctgacaccac tggcccgggg cacactgctt
     4021 gtggcgtgga gagcaggcct tgctacttgc ggggggttta tgctcctctc tctgaaggga
     4081 aaaggcagtg tgaagaagaa cttaccattt gtcatggccc tgggactaac cgctgtgaga
     4141 ctggtcgacc ccatcaacgt ggtgggactg ctgttgctca caaggaatgg gaagcggagc
     4201 tggcccccta gcgaagtact cacagctgtt ggcctgatat gcgcattggc tggagggttc
     4261 gccaaggcag atatagagat ggctgggccc atggccgcgg tcggtctgct aattgtcagt
     4321 tacgtggtct caggaaagag tgtggacatg tacattgaaa gagcaggtga catcacatgg
     4381 gaaaaagatg cggaagtcac tggaaacagt ccccggctcg atgtggcgct agatgagagt
     4441 ggtgatttct ccctggtgga ggatgacggt ccccccatga gagagatcat actcaaggtg
     4501 gtcctgatga ccatctgtgg catgaaccca atagccatac cctttgcagc tggagcgtgg
     4561 tacgtatacg tgaagactgg aaaaaggagt ggtgctctat gggatgtgcc tgctcccaag
     4621 gaagtaaaaa agggggagac cacagatgga gtgtacagag taatgactcg tagactgcta
     4681 ggttcaacac aagttggagt gggagttatg caagaggggg tctttcacac tatgtggcac
     4741 gtcacaaaag gatccgcgct gagaagcggt gaagggagac ttgatccata ctggggagat
     4801 gtcaagcagg atctggtgtc atactgtggt ccatggaagc tagatgccgc ctgggacggg
     4861 cacagcgagg tgcagctctt ggccgtgccc cccggagaga gagcgaggaa catccagact
     4921 ctgcccggaa tatttaagac aaaggatggg gacattggag cggttgcgct ggattaccca
     4981 gcaggaactt caggatctcc aatcctagac aagtgtggga gagtgatagg actttatggc
     5041 aatggggtcg tgatcaaaaa tgggagttat gttagtgcca tcacccaagg gaggagggag
     5101 gaagagactc ctgttgagtg cttcgagcct tcgatgctga agaagaagca gctaactgtc
     5161 ttagacttgc accctggagc tgggaaaacc aggagagttc ttcctgaaat agtccgtgaa
     5221 gctataaaaa caagactccg tactgtgatc ttagctccaa ccagggttgt cgctgctgaa
     5281 atggaggaag cccttagagg gcttccagtg cgttatatga caacagcagt caatgtcacc
     5341 cattctggaa cagaaatcgt cgacttaatg tgccatgcca ccttcacttc acgtctacta
     5401 cagccaatca gagtccccaa ctataatctg tatattatgg atgaggccca cttcacagat
     5461 ccctcaagta tagcagcaag aggatacatt tcaacaaggg ttgagatggg cgaggcggct
     5521 gccatcttca tgaccgccac gccaccagga acccgtgacg catttccgga ctccaactca
     5581 ccaattatgg acaccgaagt ggaagtccca gagagagcct ggagctcagg ctttgattgg
     5641 gtgacggatc attctggaaa aacagtttgg tttgttccaa gcgtgaggaa cggcaatgag
     5701 atcgcagctt gtctgacaaa ggctggaaaa cgggtcatac agctcagcag aaagactttt
     5761 gagacagagt tccagaaaac aaaacatcaa gagtgggact ttgtcgtgac aaccgacatt
     5821 tcagagatgg gcgccaactt taaagctgac cgtgtcatag attccaggag atgcctaaag
     5881 ccggtcatac ttgatggcga gagagtcatt ctggctggac ccatgcctgt cacacatgcc
     5941 agcgctgccc agaggagggg gcgcataggc aggaatccca acaaacctgg agatgagtat
     6001 ctgtatggag gtgggtgcgc agagactgac gaagaccatg cacactggct tgaagcaaga
     6061 atgctccttg acaatattta cctccaagat ggcctcatag cctcgctcta tcgacctgag
     6121 gccgacaaag tagcagccat tgagggagag ttcaagctta ggacggagca aaggaagacc
     6181 tttgtggaac tcatgaaaag aggagatctt cctgtttggc tggcctatca ggttgcatct
     6241 gccggaataa cttacacaga tagaagatgg tgctttgatg gcacgaccaa caacaccata
     6301 atggaagaca gtgtgccggc agaggtgtgg accagacacg gagagaaaag agtgctcaaa
     6361 ccgaggtgga tggacgccag agtttgttca gatcatgcgg ccctgaagtc attcaaggag
     6421 tttgccgctg ggaaaagagg agcggctttt ggagtgatgg aagccctggg aacactgcca
     6481 ggacacatga cagagagatt ccaggaagcc attgacaacc tcgctgtgct catgcgggca
     6541 gagactggaa gcaggcctta caaagccgcg gcggcccaat tgccggagac cctagagacc
     6601 attatgcttt tggggttgct gggaacagtc tcgctgggaa tctttttcgt cttgatgagg
     6661 aacaagggca tagggaagat gggctttgga atggtgactc ttggggccag cgcatggctc
     6721 atgtggctct cggaaattga gccagccaga attgcatgtg tcctcattgt tgtgttccta
     6781 ttgctggtgg tgctcatacc tgagccagaa aagcaaagat ctccccagga caaccaaatg
     6841 gcaatcatca tcatggtagc agtaggtctt ctgggcttga tcaccgccaa tgaactcgga
     6901 tggttggaga gaacaaagag tgacctaagc catctaatgg gaaggagaga ggagggagca
     6961 accataggat tctcaatgga cattgacctg cggccagcct cagcttgggc catctatgct
     7021 gccttgacaa ctttcattac cccagccgtc caacatgcag tgaccacttc atacaacaac
     7081 tactccttaa tggcgatggc cacgcaagct ggagtgttgt ttggtatggg caaagggatg
     7141 ccattctacg catgggactt tggagtcccg ctgctaatga taggttgcta ctcacaatta
     7201 acacccctga ccctaatagt ggccatcatt ttgctcgtgg cgcactacat gtacttgatc
     7261 ccagggctgc aggcagcagc tgcgcgtgct gcccagaaga gaacggcagc tggcatcatg
     7321 aagaaccctg ttgtggatgg aatagtggtg actgacattg acacaatgac aattgacccc
     7381 caagtggaga aaaagatggg acaggtgcta ctcatagcag tagccgtctc cagcgccata
     7441 ctgtcgcgga ccgcctgggg gtggggggag gctggggccc tgatcacagc cgcaacttcc
     7501 actttgtggg aaggctctcc gaacaagtac tggaactcct ctacagccac ttcactgtgt
     7561 aacattttta gggggagtta cttggctgga gcttctctaa tctacacagt aacaagaaac
     7621 gctggcttgg tcaagagacg tgggggtgga acaggagaga ccctgggaga gaaatggaag
     7681 gcccgcttga accagatgtc ggccctggag ttctactcct acaaaaagtc aggcatcacc
     7741 gaggtgtgca gagaagaggc ccgccgcgcc ctcaaggacg gtgtggcaac gggaggccat
     7801 gctgtgtccc gaggaagtgc aaagctgaga tggttggtgg agcggggata cctgcagccc
     7861 tatggaaagg tcattgatct tggatgtggc agagggggct ggagttacta cgccgccacc
     7921 atccgcaaag ttcaagaagt gaaaggatac acaaaaggag gccctggtca tgaagaacct
     7981 gtgttggtgc aaagctatgg gtggaacata gtccgtctca agagtggggt ggacgtcttt
     8041 catatggcgg ctgagccgtg tgacacgttg ctgtgtgaca taggtgagtc atcatctagt
     8101 cctgaagtgg aagaagcacg gacgctcaga gtcctctcca tggtggggga ttggcttgaa
     8161 aaaagaccag gagccttttg tataaaagtg ttgtgcccat acaccagcac tatgatggaa
     8221 accttggagc ggctgcagcg taggtatggg ggaggactgg tcagagtgcc actctcccgc
     8281 aactctacac atgagatgta ctgggtctct ggagcgaaaa gcaacaccat aaaaagtgtg
     8341 tccaccacga gccagctcct cttggggcgc atggacgggc ctaggaggcc agtgaaatat
     8401 gaggaggatg tgaatctcgg ctctggcacg cgggctgtgg taagctgcgc tgaagctccc
     8461 aacatgaaga tcattggtaa ccgcattgaa aggatccgca gtgagcacgc ggaaacgtgg
     8521 ttctttgacg agaaccaccc atataggaca tgggcttacc atggaagcta tgaggcccct
     8581 acacaagggt cagcatcctc tctagtaaac ggggttgtca ggctcctgtc aaaaccctgg
     8641 gatgtggtga ctggagtcac aggaatagcc atgaccgaca ccacaccgta tggtcagcaa
     8701 agagttttca aggaaaaagt ggacactagg gtgccagacc cccaagaagg cactcgtcag
     8761 gttatgagca tggtctcttc ctggttgtgg aaagagctag gcaaacacaa acggccacga
     8821 gtctgcacca aagaagagtt catcaacaag gttcgtagca atgcagcatt aggggcaata
     8881 tttgaagagg aaaaagagtg gaagactgca gtggaagctg tgaacgatcc aaggttctgg
     8941 gctctagtgg acaaggaaag agagcaccac ctgagaggag agtgccagag ttgtgtgtac
     9001 aacatgatgg gaaaaagaga aaagaaacaa ggggaatttg gaaaggccaa gggcagccgc
     9061 gccatctggt atatgtggct aggggctaga tttctagagt tcgaagccct tggattcttg
     9121 aacgaggatc actggatggg gagagagaac tcaggaggtg gtgttgaagg gctgggatta
     9181 caaagactcg gatatgtcct agaagagatg agtcgcatac caggaggaag gatgtatgca
     9241 gatgacactg ctggctggga tacccgcatc agcaggtttg atctagagaa tgaagctcta
     9301 atcaccaacc aaatggaaaa agggcacagg gccttggcat tggccataat caagtacaca
     9361 taccaaaata aagtggtaaa ggtccttaga ccagctgaaa aagggaaaac agttatggac
     9421 attatttcga gacaagacca aagggggagc ggacaagttg tcacttacgc tcttaacaca
     9481 tttaccaacc tagtggtgca actcattcgg aatatggagg ctgaggaagt tctagagatg
     9541 caagacttgt ggctgctgcg gaggtcagag aaagtgacca actggttgca gagcaacgga
     9601 tgggataggc tcaaacgaat ggcagtcagt ggagatgatt gcgttgtgaa gccaattgat
     9661 gataggtttg cacatgccct caggttcttg aatgatatgg gaaaagttag gaaggacaca
     9721 caagagtgga aaccctcaac tggatgggac aactgggaag aagttccgtt ttgctcccac
     9781 cacttcaaca agctccatct caaggacggg aggtccattg tggttccctg ccgccaccaa
     9841 gatgaactga ttggccgggc ccgcgtctct ccaggggcgg gatggagcat ccgggagact
     9901 gcttgcctag caaaatcata tgcgcaaatg tggcagctcc tttatttcca cagaagggac
     9961 ctccgactga tggccaatgc catttgttca tctgtgccag ttgactgggt tccaactggg
    10021 agaactacct ggtcaatcca tggaaaggga gaatggatga ccattgaaga catgcttgtg
    10081 gtgtggaaca gagtgtggat tgaggagaac gaccacatgg aagacaagac cccagttacg
    10141 aaatggacag acattcccta tttgggaaaa agggaagact tgtggtgtgg atctctcata
    10201 gggcacagac cgcgcaccac ctgggctgag aacattaaaa acacagtcaa catggtgcgc
    10261 aggatcatag gtgaggaaga aaagtacatg gactacctat ccacccaagt tcgctacttg
    10321 ggtgaagaag ggtctacacc tggagtgctg taagcaccaa tcttaatgtt gtcaggcctg
    10381 ctagtcagcc acagcttggg gaaagctgtg cagcctgtga cccccccagg agaagctggg
    10441 aaaccaagcc tatagtcagg ccgagaacgc catggcacgg aagaagccat gctgcctgtg
    10501 agcccctcag aggacactga gtcaaaaaac cccacgcgct tggaggcgca ggatgggaaa
    10561 agaaggtggc gaccttcccc acccttcaat ctggggcctg aactggagat

[niman]

Sequences producing significant alignments:

Select:AllNone Selected:0

AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments

Sequences producing significant alignments:

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
Select seq gb|KX838906.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM3-7729 polyprotein gene, complete cds	18525	18525	100%	0.0	100%	KX838906.1
Select seq gb|KX673530.1|	Zika virus isolate PHE_semen_Guadeloupe, complete genome	18435	18435	100%	0.0	99%	KX673530.1
Select seq gb|KX842449.1|	Zika virus isolate ZIKV/Human/USA/2016/ZF10.UR-010 polyprotein gene, complete cds	18429	18429	100%	0.0	99%	KX842449.1
Select seq gb|KU853013.1|	Zika virus isolate Dominican Republic/2016/PD2, complete genome	18429	18429	100%	0.0	99%	KU853013.1
Select seq gb|KU853012.1|	Zika virus isolate Dominican Republic/2016/PD1, complete genome	18429	18429	100%	0.0	99%	KU853012.1
Select seq gb|KX838905.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM2-7719 polyprotein gene, complete cds	18426	18426	100%	0.0	99%	KX838905.1
Select seq gb|KX838904.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM1-7501 polyprotein gene, complete cds	18411	18411	100%	0.0	99%	KX838904.1
Select seq gb|KX832731.1|	Zika virus isolate ZIKV/Human/USA/2016/ZL2.SA-Hu0015 polyprotein gene, complete cds	18411	18411	100%	0.0	99%	KX832731.1
Select seq gb|KX447510.1|	Zika virus isolate 1_0049_PF polyprotein gene, complete cds	18339	18339	100%	0.0	99%	KX447510.1
Select seq gb|KX280026.1|	Zika virus isolate Paraiba_01, complete genome	18336	18336	100%	0.0	99%	KX280026.1
Select seq gb|KU729217.2|	Zika virus isolate BeH823339 polyprotein gene, complete cds	18336	18336	100%	0.0	99%	KU729217.2
Select seq gb|KX447512.1|	Zika virus isolate 1_0181_PF polyprotein gene, complete cds	18330	18330	100%	0.0	99%	KX447512.1
Select seq gb|KX369547.1|	Zika virus strain PF13/251013-18, complete genome	18330	18330	100%	0.0	99%	KX369547.1
Select seq gb|KU509998.3|	Zika virus strain Haiti/1225/2014, complete genome	18330	18330	100%	0.0	99%	KU509998.3
Select seq gb|KJ776791.2|	Zika virus strain H/PF/2013, complete genome	18327	18327	100%	0.0	99%	KJ776791.2
Select seq gb|KX447509.1|	Zika virus isolate 1_0087_PF polyprotein gene, complete cds	18327	18327	100%	0.0	99%	KX447509.1
Select seq gb|KU991811.1|	Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds	18327	18327	100%	0.0	99%	KU991811.1
Select seq gb|KX447513.1|	Zika virus isolate 1_0134_PF polyprotein gene, complete cds	18321	18321	100%	0.0	99%	KX447513.1
Select seq gb|KX197205.1|	Zika virus isolate 9, complete genome	18318	18318	100%	0.0	99%	KX197205.1
Select seq gb|KX447515.1|	Zika virus isolate 1_0030_PF polyprotein gene, complete cds	18318	18318	100%	0.0	99%	KX447515.1
Select seq gb|KX447511.1|	Zika virus isolate 1_0015_PF polyprotein gene, complete cds	18318	18318	100%	0.0	99%	KX447511.1
Select seq gb|KU707826.1|	Zika virus isolate SSABR1, complete genome	18318	18318	100%	0.0	99%	KU707826.1
Select seq gb|KU365779.1|	Zika virus strain BeH819966 polyprotein gene, complete cds	18318	18318	100%	0.0	99%	KU365779.1
Select seq gb|KU321639.1|	Zika virus strain ZikaSPH2015, complete genome	18318	18318	100%	0.0	99%	KU321639.1
Select seq gb|KX447514.1|	Zika virus isolate 1_0035_PF polyprotein gene, complete cds	18312	18312	100%	0.0	99%	KX447514.1
Select seq gb|KX051563.1|	Zika virus isolate Haiti/1/2016, complete genome	18312	18312	100%	0.0	99%	KX051563.1
Select seq gb|KX447516.1|	Zika virus isolate 1_0111_PF polyprotein gene, complete cds	18309	18309	100%	0.0	99%	KX447516.1
Select seq gb|KU729218.1|	Zika virus isolate BeH828305 polyprotein gene, complete cds	18309	18309	100%	0.0	99%	KU729218.1
Select seq gb|KU527068.1|	Zika virus strain Natal RGN, complete genome	18309	18309	100%	0.0	99%	KU527068.1
Select seq gb|KX262887.1|	Zika virus isolate 103451, complete genome	18303	18303	100%	0.0	99%	KX262887.1
Select seq gb|KX197192.1|	Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome	18303	18303	100%	0.0	99%	KX197192.1
Select seq gb|KU926310.1|	Zika virus isolate Rio-S1, complete genome	18303	18303	100%	0.0	99%	KU926310.1
Select seq gb|KU926309.1|	Zika virus isolate Rio-U1, complete genome	18303	18303	100%	0.0	99%	KU926309.1
Select seq gb|KU365780.1|	Zika virus strain BeH815744 polyprotein gene, complete cds	18303	18303	100%	0.0	99%	KU365780.1
Select seq gb|KU940228.1|	Zika virus isolate Bahia07, partial genome	18300	18300	100%	0.0	99%	KU940228.1
Select seq gb|KU365777.1|	Zika virus strain BeH818995 polyprotein gene, complete cds	18300	18300	100%	0.0	99%	KU365777.1
Select seq gb|KX694534.1|	Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome	18294	18294	100%	0.0	99%	KX694534.1
Select seq gb|KX198135.1|	Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome	18294	18294	100%	0.0	99%	KX198135.1
Select seq gb|KU501217.1|	Zika virus strain 8375 polyprotein gene, complete cds	18294	18294	100%	0.0	99%	KU501217.1
Select seq gb|KU647676.1|	Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds	18291	18291	100%	0.0	99%	KU647676.1
Select seq gb|KU501216.1|	Zika virus strain 103344 polyprotein gene, complete cds	18291	18291	100%	0.0	99%	KU501216.1
Select seq gb|KX447517.1|	Zika virus isolate 1_0038_PF polyprotein gene, complete cds	18285	18285	100%	0.0	99%	KX447517.1
Select seq gb|KU758877.1|	Zika virus isolate 17271 polyprotein gene, complete cds	18285	18285	100%	0.0	99%	KU758877.1
Select seq gb|KX247646.1|	Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome	18285	18285	100%	0.0	99%	KX247646.1
Select seq gb|KX247632.1|	Zika virus isolate MEX_I_7 polyprotein gene, complete cds	18285	18285	100%	0.0	99%	KX247632.1
Select seq gb|KX156776.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome	18285	18285	100%	0.0	99%	KX156776.1
Select seq gb|KX520666.1|	Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds	18282	18282	100%	0.0	99%	KX520666.1
Select seq gb|KX156774.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome	18282	18282	100%	0.0	99%	KX156774.1
Select seq gb|KU497555.1|	Zika virus isolate Brazil-ZKV2015, complete genome	18282	18282	99%	0.0	99%	KU497555.1
Select seq gb|KU820897.5|	Zika virus isolate FLR polyprotein gene, complete cds	18276	18276	100%	0.0	99%	KU820897.5
Select seq gb|KX446951.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome	18276	18276	100%	0.0	99%	KX446951.1
Select seq gb|KX156775.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome	18276	18276	100%	0.0	99%	KX156775.1
Select seq gb|KX087102.1|	Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome	18276	18276	100%	0.0	99%	KX087102.1
Select seq gb|KU501215.1|	Zika virus strain PRVABC59, complete genome	18276	18276	100%	0.0	99%	KU501215.1
Select seq gb|KU365778.1|	Zika virus strain BeH819015 polyprotein gene, complete cds	18276	18276	100%	0.0	99%	KU365778.1
Select seq gb|KU312312.1|	Zika virus isolate Z1106033 polyprotein gene, complete cds	18276	18276	100%	0.0	99%	KU312312.1
Select seq gb|KX601168.1|	Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome	18273	18273	100%	0.0	99%	KX601168.1
Select seq gb|KX446950.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome	18273	18273	100%	0.0	99%	KX446950.1
Select seq gb|KX087101.2|	Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome	18273	18273	100%	0.0	99%	KX087101.2
Select seq gb|KU922960.1|	Zika virus isolate MEX/InDRE/Sm/2016, complete genome	18273	18273	100%	0.0	99%	KU922960.1
Select seq gb|KX806557.1|	Zika virus isolate TS17-2016, complete genome	18267	18267	100%	0.0	99%	KX806557.1
Select seq gb|KX548902.1|	Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds	18267	18267	100%	0.0	99%	KX548902.1
Select seq gb|KX377337.1|	Zika virus strain PRVABC-59, complete genome	18267	18267	100%	0.0	99%	KX377337.1
Select seq gb|KU937936.1|	Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds	18267	18267	100%	0.0	99%	KU937936.1
Select seq gb|KU922923.1|	Zika virus isolate MEX/InDRE/Lm/2016, complete genome	18267	18267	100%	0.0	99%	KU922923.1
Select seq gb|KU870645.1|	Zika virus isolate FB-GWUH-2016, complete genome	18264	18264	100%	0.0	99%	KU870645.1
Select seq gb|KX766029.1|	Zika virus isolate R116265, complete genome	18258	18258	100%	0.0	99%	KX766029.1
Select seq gb|KX702400.1|	Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome	18258	18258	100%	0.0	99%	KX702400.1
Select seq gb|KU820898.1|	Zika virus isolate GZ01 polyprotein gene, complete cds	18249	18249	100%	0.0	99%	KU820898.1
Select seq gb|KX056898.1|	Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds	18245	18245	100%	0.0	99%	KX056898.1
Select seq gb|KU955590.1|	Zika virus isolate Z16019 polyprotein gene, complete cds	18245	18245	100%	0.0	99%	KU955590.1
Select seq gb|KX766028.1|	Zika virus isolate R114916, complete genome	18242	18242	100%	0.0	99%	KX766028.1
Select seq gb|KU740184.2|	Zika virus isolate GD01 polyprotein gene, complete cds	18240	18240	100%	0.0	99%	KU740184.2
Select seq gb|KU761564.1|	Zika virus isolate GDZ16001 polyprotein gene, complete cds	18240	18240	100%	0.0	99%	KU761564.1
Select seq gb|KX117076.1|	Zika virus isolate Zhejiang04, complete genome	18236	18236	100%	0.0	99%	KX117076.1
Select seq gb|KX185891.1|	Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds	18227	18227	100%	0.0	99%	KX185891.1
Select seq gb|KU963796.1|	Zika virus isolate SZ-WIV01 polyprotein gene, complete cds	18227	18227	100%	0.0	99%	KU963796.1
Select seq gb|KX253996.1|	Zika virus isolate ZKC2/2016, complete genome	18222	18222	100%	0.0	99%	KX253996.1
Select seq gb|KU955589.1|	Zika virus isolate Z16006 polyprotein gene, complete cds	18222	18222	100%	0.0	99%	KU955589.1
Select seq gb|KU820899.2|	Zika virus isolate ZJ03, complete genome	18222	18222	100%	0.0	99%	KU820899.2
Select seq gb|KX266255.1|	Zika virus isolate ZIKV_SMGC-1, complete genome	18218	18218	100%	0.0	99%	KX266255.1
Select seq gb|KU866423.2|	Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds	18218	18218	100%	0.0	99%	KU866423.2
Select seq gb|KU940224.1|	Zika virus isolate Bahia09, partial genome	18204	18204	99%	0.0	99%	KU940224.1
Select seq gb|KU744693.1|	Zika virus isolate VE_Ganxian, complete genome	18083	18083	100%	0.0	99%	KU744693.1
Select seq gb|KX813683.1|	Zika virus isolate ZKA-16-097 polyprotein gene, complete cds	18047	18047	100%	0.0	99%	KX813683.1
Select seq gb|KU681081.3|	Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome	18002	18002	100%	0.0	99%	KU681081.3
Select seq gb|KX694532.1|	Zika virus strain ZIKV/Homo sapiens/THA/PLCal_ZV/2013, complete genome	17879	17879	100%	0.0	99%	KX694532.1
Select seq gb|KU955593.1|	Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome	17686	17686	100%	0.0	98%	KU955593.1
Select seq gb|JN860885.1|	Zika virus isolate FSS13025 polyprotein gene, partial cds	17685	17685	99%	0.0	98%	JN860885.1
Select seq gb|KF993678.1|	Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds	17649	17649	98%	0.0	99%	KF993678.1
Select seq gb|EU545988.1|	Zika virus polyprotein gene, complete cds	17540	17540	100%	0.0	98%	EU545988.1
Select seq gb|KU681082.3|	Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome	17392	17392	100%	0.0	98%	KU681082.3
Select seq gb|KX601167.1|	Zika virus strain ZIKV/Aedes sp./MYS/P6-740/1966, complete genome	16374	16374	100%	0.0	95%	KX601167.1
Select seq gb|HQ234499.1|	Zika virus isolate P6-740 polyprotein gene, partial cds	16366	16366	99%	0.0	95%	HQ234499.1
Select seq gb|KX694533.1|	Zika virus strain ZIKV/Aedes aegypti/MYS/P6-740/1966, complete genome	16365	16365	100%	0.0	95%	KX694533.1
Select seq gb|KX377336.1|	Zika virus strain P6-740, complete genome	16361	16361	100%	0.0	95%	KX377336.1
Select seq gb|KX447518.1|	Zika virus isolate 1_0117_PF polyprotein gene, partial cds	16193	16193	88%	0.0	99%	KX447518.1

[niman]

LOCUS       KX838905               10475 bp    RNA     linear   VRL 14-SEP-2016
DEFINITION  Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM2-7719 polyprotein
            gene, complete cds.
ACCESSION   KX838905
VERSION     KX838905.1  GI:1063797023
DBLINK      BioProject: PRJNA342539
KEYWORDS    .
SOURCE      Zika virus
  ORGANISM  Zika virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Flaviviridae; Flavivirus.
REFERENCE   1  (bases 1 to 10475)
  AUTHORS   Grubaugh,N., Paul,L., Gangavarupu,K., Oliveira,G.,
            Robles-Sikisaka,R., Michael,S., Isern,S. and Andersen,K.
  TITLE     Zika virus sequences from Florida, USA, 2016
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 10475)
  AUTHORS   Grubaugh,N., Paul,L., Gangavarupu,K., Oliveira,G.,
            Robles-Sikisaka,R., Michael,S., Isern,S. and Andersen,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-SEP-2016) Department of Immunology and Microbial
            Science, The Scripps Research Institute, 10550 North Torrey Pines
            Road, IMM-210, La Jolla, CA 92037, USA
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: NovoAlign v. V3.04
            Coverage              :: 160,000
            Sequencing Technology :: Illumina
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..10475
                     /organism="Zika virus"
                     /mol_type="genomic RNA"
                     /isolate="ZIKV/Aedes_aegypti/USA/2016/ZM2-7719"
                     /isolation_source="pool of 25 adult mosquitoes"
                     /host="Aedes aegypti"
                     /db_xref="taxon:64320"
                     /country="USA: Miami, Florida"
                     /collection_date="23-Aug-2016"
     CDS             82..10353
                     /codon_start=1
                     /product="polyprotein"
                     /protein_id="AOO53983.1"
                     /db_xref="GI:1063797024"
                     /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI
                     RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK
                     RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI
                     MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT
                     LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV
                     IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE
                     LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG
                     NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET
                     DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF
                     HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE
                     MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG
                     TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG
                     EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG
                     AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC
                     SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR
                     MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK
                     SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE
                     CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI
                     EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR
                     GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSVVTA
                     GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA
                     ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT
                     AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL
                     ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE
                     VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD
                     AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY
                     VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW
                     HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN
                     IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT
                     QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP
                     TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY
                     IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV
                     PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT
                     KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR
                     RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK
                     VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM
                     EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL
                     PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV
                     LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP
                     QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA
                     SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL
                     LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV
                     VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP
                     NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ
                     MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK
                     VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH
                     MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM
                     ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP
                     VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG
                     SYEAPTQGSASSLVNGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD
                     PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV
                     EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA
                     RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD
                     TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ
                     DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR
                     LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH
                     FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR
                     DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTIEDMLVVWNRVWIEENDHMEDKT
                     PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGEEEKYMDYLST
                     QVRYLGEEGSTPGVL"
ORIGIN      
        1 gcgacagttc gagtttgaag cgaaagctag caacagtatc aacaggtttt attttggatt
       61 tggaaacgag agtttctggt catgaaaaac ccaaaaaaga aatccggagg attccggatt
      121 gtcaatatgc taaaacgcgg agtagcccgt gtgagcccct ttgggggctt gaagaggctg
      181 ccagccggac ttctgctggg tcatgggccc atcaggatgg tcttggcgat tctagccttt
      241 ttgagattca cggcaatcaa gccatcactg ggtctcatca atagatgggg ttcagtgggg
      301 aaaaaagagg ctatggaaat aataaagaag ttcaagaaag atctggctgc catgctgaga
      361 ataatcaatg ctaggaagga gaagaagaga cgaggcgcag atactagtgt cggaattgtt
      421 ggcctcctgc tgaccacagc tatggcagcg gaggtcacta gacgtgggag tgcatactac
      481 atgtacttgg acagaaacga tgctggggag gccatatctt tcccaaccac attggggatg
      541 aataagtgtt atatacagat catggatctt ggacacatgt gtgatgccac catgagctat
      601 gaatgcccta tgctggatga gggggtggaa ccagatgacg tcgattgttg gtgcaacacg
      661 acgtcaactt gggttgtgta cggaacctgc catcacaaaa aaggtgaagc acggagatct
      721 agaagagctg tgacgctccc ctcccattcc actaggaagc tgcaaacgcg gtcgcaaacc
      781 tggttggaat caagagaata cacaaagcac ttgattagag tcgaaaattg gatattcagg
      841 aaccctggct tcgcgttagc agcagctgcc atcgcttggc ttttgggaag ctcaacgagc
      901 caaaaagtta tatacttggt catgatactg ctgattgccc cggcatacag catcaggtgc
      961 ataggagtca gcaataggga ctttgtggaa ggtatgtcag gtgggacttg ggttgatgtt
     1021 gtcttggaac atggaggttg tgtcaccgta atggcacagg acaaaccgac tgtcgacata
     1081 gagctggtta caacaacagt cagcaacatg gcggaggtaa gatcctactg ctatgaggca
     1141 tcaatatcag acatggcttc ggacagccgc tgcccaacac aaggtgaagc ctaccttgac
     1201 aagcaatcag acactcaata tgtctgcaaa agaacgttag tggacagagg ctggggaaat
     1261 ggatgtggac tttttggcaa agggagcctg gtgacatgcg ctaagtttgc atgctccaag
     1321 aaaatgaccg ggaagagcat ccagccagag aatctggagt accggataat gctgtcagtt
     1381 catggctccc agcacagtgg gatgatcgtt aatgacacag gacatgaaac tgatgagaat
     1441 agagcgaagg ttgagataac gcccaattca ccaagagccg aagccaccct ggggggtttt
     1501 ggaagcctag gactggattg tgaaccgagg acaggccttg acttttcaga tttgtattac
     1561 ttgactatga ataacaagca ctggttggtt cacaaggagt ggttccacga cattccatta
     1621 ccttggcacg ctggggcaga caccggaact ccacactgga acaacaaaga agcactggta
     1681 gagttcaagg acgcacatgc caaaaggcaa actgtcgtgg ttctagggag tcaagaagga
     1741 gcagttcaca cggcccttgc tggagctctg gaggctgaga tggatggtgc aaagggaagg
     1801 ctgtcctctg gccacttgaa atgtcgcctg aaaatggata aacttagatt gaagggcgtg
     1861 tcatactcct tgtgtaccgc agcgttcaca ttcaccaaga tcccggctga aacactgcac
     1921 gggacagtca cagtggaggt acagtacgca gggacagatg gaccttgcaa ggttccagct
     1981 cagatggcgg tggacatgca aactctgacc ccagttggga ggttgataac cgccaacccc
     2041 gtaatcactg aaagcactga gaactctaag atgatgctgg aacttgatcc accatttggg
     2101 gactcttaca ttgtcatagg agtcggggag aagaagatca cccaccactg gcacaggagt
     2161 ggcagcacca ttggaaaagc atttgaagcc actgtgagag gtgccaagag aatggcagtc
     2221 ttgggagata cagcctggga ctttggatca gttggaggcg ctctcaactc attgggcaag
     2281 ggcatccatc aaatttttgg agcagctttc aaatcattgt ttggaggaat gtcctggttc
     2341 tcacaaatcc tcattggaac gttgctgatg tggttgggtc tgaacacaaa gaatggatct
     2401 atttccctca tgtgcttggc cttaggggga gtgttgatct tcttatccac agccgtctct
     2461 gctgatgtgg ggtgctcggt ggacttctca aagaaggaga cgagatgcgg tacaggggtg
     2521 ttcgtctata acgacgttga agcctggagg gacaggtaca agtaccatcc tgactccccc
     2581 cgtagattgg cagcagcagt caagcaagcc tgggaagatg gtatctgcgg gatctcctct
     2641 gtttcaagaa tggaaaacat catgtggaga tcagtagaag gggagctcaa tgcaatcctg
     2701 gaagagaatg gagttcaact gacggtcgtt gtgggatctg taaaaaaccc catgtggaga
     2761 ggtccacaga gattgcccgt gcctgtgaac gagctgcccc acggctggaa ggcttggggg
     2821 aaatcgtact tcgttagagc agcaaagaca aataacagct ttgtcgtgga tggtgacaca
     2881 ctgaaggaat gcccactcaa acatagagca tggaacagct ttcttgtgga ggatcatggg
     2941 ttcggggtat ttcacactag tgtctggctc aaggttagag aagattattc attagagtgt
     3001 gatccagccg ttattggaac agctgttaag ggaaaggagg ctgtacacag tgatctaggc
     3061 tactggattg agagtgagaa gaatgacaca tggaggctga agagggccca tctgatcgag
     3121 atgaaaacat gtgaatggcc aaagtcccac acattgtgga cagatggaat agaagagagt
     3181 gatctgatca tacccaagtc tttagctggg ccactcagcc atcacaatac cagagagggc
     3241 tacaggaccc aaatgaaagg gccatggcac agtgaagagc ttgaaattcg gtttgaggaa
     3301 tgcccaggca ctaaggtcca cgtggaggaa acatgtggaa caagaggacc atctctgaga
     3361 tcaaccactg caagcggaag ggtgatcgag gaatggtgct gcagggagtg cacaatgccc
     3421 ccactgtcgt tccgggctaa agatggctgt tggtatggaa tggagataag gcccaggaaa
     3481 gaaccagaaa gcaacttagt aaggtcagtg gtgactgcag gatcaactga tcacatggat
     3541 cacttctccc ttggagtgct tgtgattctg ctcatggtgc aggaagggct gaagaagaga
     3601 atgaccacaa agatcatcat aagcacatca atggcagtgc tggtagctat gatcctggga
     3661 ggattttcaa tgagtgacct ggctaagctt gcaattttga tgggtgccac cttcgcggaa
     3721 atgaacactg gaggagatgt agctcatctg gcgctgatag cggcattcaa agtcagacca
     3781 gcgttgctgg tatctttcat cttcagagct aattggacac cccgtgaaag catgctgctg
     3841 gccttggcct cgtgtctttt gcaaactgcg atctccgcct tggaaggcga cctgatggtt
     3901 ctcatcaatg gttttgcttt ggcctggttg gcaatacgag cgatggttgt tccacgcact
     3961 gataacatca ccttggcaat cctggctgct ctgacaccac tggcccgggg cacactgctt
     4021 gtggcgtgga gagcaggcct tgctacttgc ggggggttta tgctcctctc tctgaaggga
     4081 aaaggcagtg tgaagaagaa cttaccattt gtcatggccc tgggactaac cgctgtgagg
     4141 ctggtcgacc ccatcaacgt ggtgggactg ctgttgctca caaggagtgg gaagcggagc
     4201 tggcccccta gcgaagtact cacagctgtt ggcctgatat gcgcattggc tggagggttc
     4261 gccaaggcag atatagagat ggctgggccc atggccgcgg tcggtctgct aattgtcagt
     4321 tacgtggtct caggaaagag tgtggacatg tacattgaaa gagcaggtga catcacatgg
     4381 gaaaaagatg cggaagtcac tggaaacagt ccccggctcg atgtggcgct agatgagagt
     4441 ggtgatttct ccctggtgga ggatgacggt ccccccatga gagagatcat actcaaggtg
     4501 gtcctgatga ccatctgtgg catgaaccca atagccatac cctttgcagc tggagcgtgg
     4561 tacgtatacg tgaagactgg aaaaaggagt ggtgctctat gggatgtgcc tgctcccaag
     4621 gaagtaaaaa agggggagac cacagatgga gtgtacagag taatgactcg tagactgcta
     4681 ggttcaacac aagttggagt gggagttatg caagaggggg tctttcacac tatgtggcac
     4741 gtcacaaaag gatccgcgct gagaagcggt gaagggagac ttgatccata ctggggagat
     4801 gtcaagcagg atctggtgtc atactgtggt ccatggaagc tagatgccgc ctgggacggg
     4861 cacagcgagg tgcagctctt ggccgtgccc cccggagaga gagcgaggaa catccagact
     4921 ctgcccggaa tatttaagac aaaggatggg gacattggag cggttgcgct ggattaccca
     4981 gcaggaactt caggatctcc aatcctagac aagtgtggga gagtgatagg actttatggc
     5041 aatggggtcg tgatcaaaaa tgggagttat gttagtgcca tcacccaagg gaggagggag
     5101 gaagagactc ctgttgagtg cttcgagcct tcgatgctga agaagaagca gctaactgtc
     5161 ttagacttgc atcctggagc tgggaaaacc aggagagttc ttcctgaaat agtccgtgaa
     5221 gctataaaaa caagactccg tactgtgatc ttagctccaa ccagggttgt cgctgctgaa
     5281 atggaggaag cccttagagg gcttccagtg cgttatatga caacagcagt caatgtcacc
     5341 cattctggaa cagaaatcgt cgacttaatg tgccatgcca ccttcacttc acgtctacta
     5401 cagccaatca gagtccccaa ctataatctg tatattatgg atgaggccca cttcacagat
     5461 ccctcaagta tagcagcaag aggatacatt tcaacaaggg ttgagatggg cgaggcggct
     5521 gccatcttca tgaccgccac gccaccagga acccgtgacg catttccgga ctccaactca
     5581 ccaattatgg acaccgaagt ggaagtccca gagagagcct ggagctcagg ctttgattgg
     5641 gtgacggatc attctggaaa aacagtttgg tttgttccaa gcgtgaggaa cggcaatgag
     5701 atcgcagctt gtctgacaaa ggctggaaaa cgggtcatac agctcagcag aaagactttt
     5761 gagacagagt tccagaaaac aaaacatcaa gagtgggact ttgtcgtgac gaccgacatt
     5821 tcagagatgg gcgccaactt taaagctgac cgtgtcatag attccaggag atgcctaaag
     5881 ccggtcatac ttgatggcga gagagtcatt ctggctggac ccatgcctgt cacacatgcc
     5941 agcgctgccc agaggagggg gcgcataggc aggaatccca acaaacctgg agatgagtat
     6001 ctgtatggag gtgggtgcgc agagactgac gaagaccatg cacactggct tgaagcaaga
     6061 atgctccttg acaatattta cctccaagat ggcctcatag cctcgctcta tcgacctgag
     6121 gccgacaaag tagcagccat tgagggagag ttcaagctta ggacggagca aaggaagacc
     6181 tttgtggaac tcatgaaaag aggagatctt cctgtttggc tggcctatca ggttgcatct
     6241 gccggaataa cttacacaga tagaagatgg tgctttgatg gcacgaccaa caacaccata
     6301 atggaagaca gtgtgccggc agaggtgtgg accagacacg gagagaaaag agtgctcaaa
     6361 ccgaggtgga tggacgccag agtttgttca gatcatgcgg ccctgaagtc attcaaggag
     6421 tttgccgctg ggaaaagagg agcggctttt ggagtgatgg aagccctggg aacactgcca
     6481 ggacacatga cagagagatt ccaggaagcc attgacaacc tcgctgtgct catgcgggca
     6541 gagactggaa gcaggcctta caaagccgcg gcggcccaat tgccggagac cctagagacc
     6601 attatgcttt tggggttgct gggaacagtc tcgctgggaa tctttttcgt cttgatgagg
     6661 aacaagggca tagggaagat gggctttgga atggtgactc ttggggccag cgcatggctc
     6721 atgtggctct cggaaattga gccagccaga attgcatgtg tcctcattgt tgtgttccta
     6781 ttgctggtgg tgctcatacc tgagccagaa aagcaaagat ctccccagga caaccaaatg
     6841 gcaatcatca tcatggtagc agtaggtctt ctaggcttga tcaccgccaa tgaactcgga
     6901 tggttggaga gaacaaagag tgacctaagc catctaatgg gaaggagaga ggagggagca
     6961 accataggat tctcaatgga cattgacctg cggccagcct cagcttgggc catctatgct
     7021 gccttgacaa ctttcattac cccagccgtc caacatgcag tgaccacttc atacaacaac
     7081 tactccttaa tggcgatggc cacgcaagct ggagtgttgt ttggtatggg caaagggatg
     7141 ccattctacg catgggactt tggagtcccg ctgctaatga taggttgcta ctcacaatta
     7201 acacccctga ccctaatagt ggccatcatt ttgctcgtgg cgcactacat gtacttgatc
     7261 ccagggctgc aggcagcagc tgcgcgtgct gcccagaaga gaacggcagc tggcatcatg
     7321 aagaaccctg ttgtggatgg aatagtggtg actgacattg acacaatgac aattgacccc
     7381 caagtggaga aaaagatggg acaggtgcta ctcatagcag tagccgtctc cagcgccata
     7441 ctgtcgcgga ccgcctgggg gtggggggag gctggggccc tgatcacagc cgcaacttcc
     7501 actttgtggg aaggctctcc gaacaagtac tggaactcct ctacagccac ttcactgtgt
     7561 aacattttta ggggaagtta cttggctgga gcttctctaa tctacacagt aacaagaaac
     7621 gctggcttgg tcaagagacg tgggggtgga acaggagaga ccctgggaga gaaatggaag
     7681 gcccgcttga accagatgtc ggccctggag ttctactcct acaaaaagtc aggcatcacc
     7741 gaggtgtgca gagaagaggc ccgccgcgcc ctcaaggacg gtgtggcaac gggaggccat
     7801 gctgtgtccc gaggaagtgc aaagctgaga tggttggtgg agcggggata cctgcagccc
     7861 tatggaaagg tcattgatct tggatgtggc agagggggct ggagttacta cgccgccacc
     7921 atccgcaaag ttcaagaagt gaaaggatac acaaaaggag gccctggtca tgaagaaccc
     7981 gtgttggtgc aaagctatgg gtggaacata gtccgtctca agagtggggt ggacgtcttt
     8041 catatggcgg ctgagccgtg tgacacgttg ctatgtgaca taggtgagtc atcatctagt
     8101 cctgaagtgg aagaagcacg gacgctcaga gtcctctcca tggtggggga ttggcttgaa
     8161 aaaagaccag gagccttttg tataaaagtg ttgtgcccat acaccagcac tatgatggaa
     8221 accctggagc gactgcagcg taggtatggg ggaggactgg tcagagtgcc actctcccgc
     8281 aactctacac atgagatgta ctgggtctct ggagcgaaaa gcaacaccat aaaaagtgtg
     8341 tccaccacga gccagctcct cttggggcgc atggacgggc ctaggaggcc agtgaaatat
     8401 gaggaggatg tgaatctcgg ctctggcacg cgggctgtgg taagctgcgc tgaagctccc
     8461 aacatgaaga tcattggtaa ccgcattgaa aggatccgca gtgagcacgc ggaaacgtgg
     8521 ttctttgacg agaaccaccc atataggaca tgggcttacc atggaagcta tgaggccccc
     8581 acacaagggt cagcatcctc tctagtaaac ggggttgtca ggctcctgtc aaaaccctgg
     8641 gatgtggtga ctggagtcac aggaatagcc atgaccgaca ccacaccgta tggtcagcaa
     8701 agagttttca aggaaaaagt ggacactagg gtgccagacc cccaagaagg cactcgtcag
     8761 gttatgagca tggtctcttc ctggttgtgg aaagagctag gcaaacacaa acggccacga
     8821 gtctgtacca aagaagagtt catcaacaag gttcgtagca atgcagcatt aggggcaata
     8881 tttgaagagg aaaaagagtg gaagactgca gtggaagctg tgaacgatcc aaggttctgg
     8941 gctctagtgg acaaggaaag agagcaccac ctgagaggag agtgccagag ttgtgtgtac
     9001 aacatgatgg gaaaaagaga aaagaaacaa ggggaatttg gaaaggccaa gggcagccgc
     9061 gccatctggt atatgtggct aggggctaga tttctagagt tcgaagccct tggattcttg
     9121 aacgaggatc actggatggg gagagagaac tcaggaggtg gtgttgaagg gctgggatta
     9181 caaagactcg gatatgtcct agaagagatg agtcgcatac caggaggaag gatgtatgca
     9241 gatgacactg ctggctggga tacccgcatc agcaggtttg atctagagaa tgaagctcta
     9301 atcaccaacc aaatggaaaa agggcacagg gccttggcat tggccataat caagtacaca
     9361 taccaaaaca aagtggtaaa ggtccttaga ccagctgaaa aagggaaaac agttatggac
     9421 attatttcga gacaagacca aagggggagc ggacaagttg tcacttacgc tcttaacaca
     9481 tttaccaacc tagtggtgca actcattcgg aatatggagg ctgaggaagt tctagagatg
     9541 caagacttgt ggctgctgcg gaggtcagag aaagtgacca actggttgca gagcaacgga
     9601 tgggataggc tcaaacgaat ggcagtcagt ggagatgatt gcgttgtgaa gccaattgat
     9661 gataggtttg cacatgccct caggttcttg aatgatatgg gaaaagttag gaaggacaca
     9721 caagagtgga aaccctcaac tggatgggac aactgggaag aagttccgtt ttgctcccac
     9781 cacttcaaca agctccatct caaggacggg aggtccattg tggttccctg ccgccaccaa
     9841 gatgaactga ttggtcgggc ccgcgtctct ccaggggcgg gatggagcat ccgggagact
     9901 gcttgcctag caaaatcata tgcgcaaatg tggcagctcc tttatttcca cagaagggac
     9961 ctccgactga tggccaatgc catttgttca tctgtgccag ttgactgggt tccaactggg
    10021 agaactacct ggtcaatcca tggaaaggga gaatggatga ccattgaaga catgcttgtg
    10081 gtgtggaaca gagtgtggat tgaggagaac gaccacatgg aagacaagac cccagttacg
    10141 aaatggacag acattcccta tttgggaaaa agggaagact tgtggtgtgg atctctcata
    10201 gggcacagac cgcgcaccac ctgggctgag aacattaaaa acacagtcaa catggtgcgc
    10261 aggatcatag gtgaggaaga aaagtacatg gactacctat ccacccaagt ccgctacttg
    10321 ggtgaagaag ggtctacacc tggagtgctg taagcaccaa tcttaatgtt gtcaggcctg
    10381 ctagtcagcc acagcttggg gaaagctgtg cagcctgtga cccccccagg agaagctggg
    10441 aaaccaagcc tatagtcagg ccgagaacgc catgg

[niman]

Sequences producing significant alignments:

Select:AllNone Selected:0

AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments

Sequences producing significant alignments:

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
Select seq gb|KX838905.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM2-7719 polyprotein gene, complete cds	18525	18525	100%	0.0	100%	KX838905.1
Select seq gb|KX842449.1|	Zika virus isolate ZIKV/Human/USA/2016/ZF10.UR-010 polyprotein gene, complete cds	18511	18511	100%	0.0	99%	KX842449.1
Select seq gb|KX838904.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM1-7501 polyprotein gene, complete cds	18493	18493	100%	0.0	99%	KX838904.1
Select seq gb|KX832731.1|	Zika virus isolate ZIKV/Human/USA/2016/ZL2.SA-Hu0015 polyprotein gene, complete cds	18493	18493	100%	0.0	99%	KX832731.1
Select seq gb|KU853013.1|	Zika virus isolate Dominican Republic/2016/PD2, complete genome	18447	18447	100%	0.0	99%	KU853013.1
Select seq gb|KU853012.1|	Zika virus isolate Dominican Republic/2016/PD1, complete genome	18447	18447	100%	0.0	99%	KU853012.1
Select seq gb|KX838906.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM3-7729 polyprotein gene, complete cds	18426	18426	100%	0.0	99%	KX838906.1
Select seq gb|KX673530.1|	Zika virus isolate PHE_semen_Guadeloupe, complete genome	18426	18426	100%	0.0	99%	KX673530.1
Select seq gb|KX447510.1|	Zika virus isolate 1_0049_PF polyprotein gene, complete cds	18357	18357	100%	0.0	99%	KX447510.1
Select seq gb|KX280026.1|	Zika virus isolate Paraiba_01, complete genome	18354	18354	100%	0.0	99%	KX280026.1
Select seq gb|KX447512.1|	Zika virus isolate 1_0181_PF polyprotein gene, complete cds	18348	18348	100%	0.0	99%	KX447512.1
Select seq gb|KX369547.1|	Zika virus strain PF13/251013-18, complete genome	18348	18348	100%	0.0	99%	KX369547.1
Select seq gb|KU509998.3|	Zika virus strain Haiti/1225/2014, complete genome	18348	18348	100%	0.0	99%	KU509998.3
Select seq gb|KJ776791.2|	Zika virus strain H/PF/2013, complete genome	18345	18345	100%	0.0	99%	KJ776791.2
Select seq gb|KX447509.1|	Zika virus isolate 1_0087_PF polyprotein gene, complete cds	18345	18345	100%	0.0	99%	KX447509.1
Select seq gb|KU991811.1|	Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds	18345	18345	100%	0.0	99%	KU991811.1
Select seq gb|KU729217.2|	Zika virus isolate BeH823339 polyprotein gene, complete cds	18345	18345	100%	0.0	99%	KU729217.2
Select seq gb|KX447513.1|	Zika virus isolate 1_0134_PF polyprotein gene, complete cds	18339	18339	100%	0.0	99%	KX447513.1
Select seq gb|KX197205.1|	Zika virus isolate 9, complete genome	18336	18336	100%	0.0	99%	KX197205.1
Select seq gb|KX447515.1|	Zika virus isolate 1_0030_PF polyprotein gene, complete cds	18336	18336	100%	0.0	99%	KX447515.1
Select seq gb|KX447511.1|	Zika virus isolate 1_0015_PF polyprotein gene, complete cds	18336	18336	100%	0.0	99%	KX447511.1
Select seq gb|KU707826.1|	Zika virus isolate SSABR1, complete genome	18336	18336	100%	0.0	99%	KU707826.1
Select seq gb|KU365779.1|	Zika virus strain BeH819966 polyprotein gene, complete cds	18336	18336	100%	0.0	99%	KU365779.1
Select seq gb|KU321639.1|	Zika virus strain ZikaSPH2015, complete genome	18336	18336	100%	0.0	99%	KU321639.1
Select seq gb|KX447514.1|	Zika virus isolate 1_0035_PF polyprotein gene, complete cds	18330	18330	100%	0.0	99%	KX447514.1
Select seq gb|KX051563.1|	Zika virus isolate Haiti/1/2016, complete genome	18330	18330	100%	0.0	99%	KX051563.1
Select seq gb|KX447516.1|	Zika virus isolate 1_0111_PF polyprotein gene, complete cds	18327	18327	100%	0.0	99%	KX447516.1
Select seq gb|KU729218.1|	Zika virus isolate BeH828305 polyprotein gene, complete cds	18327	18327	100%	0.0	99%	KU729218.1
Select seq gb|KU527068.1|	Zika virus strain Natal RGN, complete genome	18327	18327	100%	0.0	99%	KU527068.1
Select seq gb|KX262887.1|	Zika virus isolate 103451, complete genome	18321	18321	100%	0.0	99%	KX262887.1
Select seq gb|KX197192.1|	Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome	18321	18321	100%	0.0	99%	KX197192.1
Select seq gb|KU926310.1|	Zika virus isolate Rio-S1, complete genome	18321	18321	100%	0.0	99%	KU926310.1
Select seq gb|KU926309.1|	Zika virus isolate Rio-U1, complete genome	18321	18321	100%	0.0	99%	KU926309.1
Select seq gb|KU365780.1|	Zika virus strain BeH815744 polyprotein gene, complete cds	18321	18321	100%	0.0	99%	KU365780.1
Select seq gb|KU940228.1|	Zika virus isolate Bahia07, partial genome	18318	18318	100%	0.0	99%	KU940228.1
Select seq gb|KU365777.1|	Zika virus strain BeH818995 polyprotein gene, complete cds	18318	18318	100%	0.0	99%	KU365777.1
Select seq gb|KX694534.1|	Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome	18312	18312	100%	0.0	99%	KX694534.1
Select seq gb|KX198135.1|	Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome	18312	18312	100%	0.0	99%	KX198135.1
Select seq gb|KU501217.1|	Zika virus strain 8375 polyprotein gene, complete cds	18312	18312	100%	0.0	99%	KU501217.1
Select seq gb|KU647676.1|	Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds	18309	18309	100%	0.0	99%	KU647676.1
Select seq gb|KU501216.1|	Zika virus strain 103344 polyprotein gene, complete cds	18309	18309	100%	0.0	99%	KU501216.1
Select seq gb|KX447517.1|	Zika virus isolate 1_0038_PF polyprotein gene, complete cds	18303	18303	100%	0.0	99%	KX447517.1
Select seq gb|KU758877.1|	Zika virus isolate 17271 polyprotein gene, complete cds	18303	18303	100%	0.0	99%	KU758877.1
Select seq gb|KX247646.1|	Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome	18303	18303	100%	0.0	99%	KX247646.1
Select seq gb|KX156776.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome	18303	18303	100%	0.0	99%	KX156776.1
Select seq gb|KX520666.1|	Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds	18300	18300	100%	0.0	99%	KX520666.1
Select seq gb|KX156774.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome	18300	18300	100%	0.0	99%	KX156774.1
Select seq gb|KU497555.1|	Zika virus isolate Brazil-ZKV2015, complete genome	18300	18300	99%	0.0	99%	KU497555.1
Select seq gb|KU820897.5|	Zika virus isolate FLR polyprotein gene, complete cds	18294	18294	100%	0.0	99%	KU820897.5
Select seq gb|KX247632.1|	Zika virus isolate MEX_I_7 polyprotein gene, complete cds	18294	18294	100%	0.0	99%	KX247632.1
Select seq gb|KX156775.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome	18294	18294	100%	0.0	99%	KX156775.1
Select seq gb|KX087102.1|	Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome	18294	18294	100%	0.0	99%	KX087102.1
Select seq gb|KU365778.1|	Zika virus strain BeH819015 polyprotein gene, complete cds	18294	18294	100%	0.0	99%	KU365778.1
Select seq gb|KU312312.1|	Zika virus isolate Z1106033 polyprotein gene, complete cds	18294	18294	100%	0.0	99%	KU312312.1
Select seq gb|KU922960.1|	Zika virus isolate MEX/InDRE/Sm/2016, complete genome	18291	18291	100%	0.0	99%	KU922960.1
Select seq gb|KX806557.1|	Zika virus isolate TS17-2016, complete genome	18285	18285	100%	0.0	99%	KX806557.1
Select seq gb|KX548902.1|	Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds	18285	18285	100%	0.0	99%	KX548902.1
Select seq gb|KX446951.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome	18285	18285	100%	0.0	99%	KX446951.1
Select seq gb|KU937936.1|	Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds	18285	18285	100%	0.0	99%	KU937936.1
Select seq gb|KU922923.1|	Zika virus isolate MEX/InDRE/Lm/2016, complete genome	18285	18285	100%	0.0	99%	KU922923.1
Select seq gb|KU501215.1|	Zika virus strain PRVABC59, complete genome	18285	18285	100%	0.0	99%	KU501215.1
Select seq gb|KX601168.1|	Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome	18282	18282	100%	0.0	99%	KX601168.1
Select seq gb|KX446950.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome	18282	18282	100%	0.0	99%	KX446950.1
Select seq gb|KX087101.2|	Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome	18282	18282	100%	0.0	99%	KX087101.2
Select seq gb|KU870645.1|	Zika virus isolate FB-GWUH-2016, complete genome	18282	18282	100%	0.0	99%	KU870645.1
Select seq gb|KX702400.1|	Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome	18276	18276	100%	0.0	99%	KX702400.1
Select seq gb|KX377337.1|	Zika virus strain PRVABC-59, complete genome	18276	18276	100%	0.0	99%	KX377337.1
Select seq gb|KX766029.1|	Zika virus isolate R116265, complete genome	18267	18267	100%	0.0	99%	KX766029.1
Select seq gb|KU820898.1|	Zika virus isolate GZ01 polyprotein gene, complete cds	18267	18267	100%	0.0	99%	KU820898.1
Select seq gb|KX056898.1|	Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds	18264	18264	100%	0.0	99%	KX056898.1
Select seq gb|KU955590.1|	Zika virus isolate Z16019 polyprotein gene, complete cds	18264	18264	100%	0.0	99%	KU955590.1
Select seq gb|KX766028.1|	Zika virus isolate R114916, complete genome	18260	18260	100%	0.0	99%	KX766028.1
Select seq gb|KU740184.2|	Zika virus isolate GD01 polyprotein gene, complete cds	18258	18258	100%	0.0	99%	KU740184.2
Select seq gb|KU761564.1|	Zika virus isolate GDZ16001 polyprotein gene, complete cds	18258	18258	100%	0.0	99%	KU761564.1
Select seq gb|KX117076.1|	Zika virus isolate Zhejiang04, complete genome	18254	18254	100%	0.0	99%	KX117076.1
Select seq gb|KX185891.1|	Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds	18245	18245	100%	0.0	99%	KX185891.1
Select seq gb|KU963796.1|	Zika virus isolate SZ-WIV01 polyprotein gene, complete cds	18245	18245	100%	0.0	99%	KU963796.1
Select seq gb|KX253996.1|	Zika virus isolate ZKC2/2016, complete genome	18240	18240	100%	0.0	99%	KX253996.1
Select seq gb|KU955589.1|	Zika virus isolate Z16006 polyprotein gene, complete cds	18240	18240	100%	0.0	99%	KU955589.1
Select seq gb|KU820899.2|	Zika virus isolate ZJ03, complete genome	18240	18240	100%	0.0	99%	KU820899.2
Select seq gb|KX266255.1|	Zika virus isolate ZIKV_SMGC-1, complete genome	18236	18236	100%	0.0	99%	KX266255.1
Select seq gb|KU866423.2|	Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds	18236	18236	100%	0.0	99%	KU866423.2
Select seq gb|KU940224.1|	Zika virus isolate Bahia09, partial genome	18222	18222	99%	0.0	99%	KU940224.1
Select seq gb|KU744693.1|	Zika virus isolate VE_Ganxian, complete genome	18101	18101	100%	0.0	99%	KU744693.1
Select seq gb|KX813683.1|	Zika virus isolate ZKA-16-097 polyprotein gene, complete cds	18065	18065	100%	0.0	99%	KX813683.1
Select seq gb|KU681081.3|	Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome	18011	18011	100%	0.0	99%	KU681081.3
Select seq gb|KX694532.1|	Zika virus strain ZIKV/Homo sapiens/THA/PLCal_ZV/2013, complete genome	17888	17888	100%	0.0	99%	KX694532.1
Select seq gb|KU955593.1|	Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome	17704	17704	100%	0.0	98%	KU955593.1
Select seq gb|JN860885.1|	Zika virus isolate FSS13025 polyprotein gene, partial cds	17703	17703	99%	0.0	98%	JN860885.1
Select seq gb|KF993678.1|	Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds	17658	17658	98%	0.0	99%	KF993678.1
Select seq gb|EU545988.1|	Zika virus polyprotein gene, complete cds	17549	17549	100%	0.0	98%	EU545988.1
Select seq gb|KU681082.3|	Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome	17401	17401	100%	0.0	98%	KU681082.3
Select seq gb|KX601167.1|	Zika virus strain ZIKV/Aedes sp./MYS/P6-740/1966, complete genome	16374	16374	100%	0.0	95%	KX601167.1
Select seq gb|HQ234499.1|	Zika virus isolate P6-740 polyprotein gene, partial cds	16366	16366	99%	0.0	95%	HQ234499.1
Select seq gb|KX694533.1|	Zika virus strain ZIKV/Aedes aegypti/MYS/P6-740/1966, complete genome	16365	16365	100%	0.0	95%	KX694533.1
Select seq gb|KX377336.1|	Zika virus strain P6-740, complete genome	16361	16361	100%	0.0	95%	KX377336.1
Select seq gb|KX447518.1|	Zika virus isolate 1_0117_PF polyprotein gene, partial cds	16217	16217	88%	0.0	99%	KX447518.1

[niman]

LOCUS       KX838904               10524 bp    RNA     linear   VRL 14-SEP-2016
DEFINITION  Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM1-7501 polyprotein
            gene, complete cds.
ACCESSION   KX838904
VERSION     KX838904.1  GI:1063797021
DBLINK      BioProject: PRJNA342539
KEYWORDS    .
SOURCE      Zika virus
  ORGANISM  Zika virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Flaviviridae; Flavivirus.
REFERENCE   1  (bases 1 to 10524)
  AUTHORS   Grubaugh,N., Paul,L., Gangavarupu,K., Oliveira,G.,
            Robles-Sikisaka,R., Michael,S., Isern,S. and Andersen,K.
  TITLE     Zika virus sequences from Florida, USA, 2016
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 10524)
  AUTHORS   Grubaugh,N., Paul,L., Gangavarupu,K., Oliveira,G.,
            Robles-Sikisaka,R., Michael,S., Isern,S. and Andersen,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-SEP-2016) Department of Immunology and Microbial
            Science, The Scripps Research Institute, 10550 North Torrey Pines
            Road, IMM-210, La Jolla, CA 92037, USA
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: NovoAlign v. V3.04
            Coverage              :: 160,000
            Sequencing Technology :: Illumina
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..10524
                     /organism="Zika virus"
                     /mol_type="genomic RNA"
                     /isolate="ZIKV/Aedes_aegypti/USA/2016/ZM1-7501"
                     /isolation_source="pool of 39 adult mosquitoes"
                     /host="Aedes aegypti"
                     /db_xref="taxon:64320"
                     /country="USA: Miami, Florida"
                     /collection_date="22-Aug-2016"
     CDS             82..10353
                     /codon_start=1
                     /product="polyprotein"
                     /protein_id="AOO53982.1"
                     /db_xref="GI:1063797022"
                     /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI
                     RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK
                     RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI
                     MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT
                     LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV
                     IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE
                     LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG
                     NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET
                     DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF
                     HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE
                     MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG
                     TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG
                     EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG
                     AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC
                     SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR
                     MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK
                     SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE
                     CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI
                     EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR
                     GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSVVTA
                     GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA
                     ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT
                     AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL
                     ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE
                     VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD
                     AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY
                     VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW
                     HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN
                     IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT
                     QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP
                     TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY
                     IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV
                     PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT
                     KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR
                     RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK
                     VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM
                     EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL
                     PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV
                     LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP
                     QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGKREEGATIGFSMDIDLRPA
                     SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL
                     LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV
                     VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP
                     NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ
                     MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK
                     VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH
                     MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM
                     ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP
                     VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG
                     SYEAPTQGSASSLVNGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD
                     PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV
                     EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA
                     RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD
                     TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ
                     DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR
                     LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH
                     FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR
                     DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTIEDMLVVWNRVWIEENDHMEDKT
                     PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGEEEKYMDYLST
                     QVRYLGEEGSTPGVL"
ORIGIN      
        1 gcgacagttc gagtttgaag cgaaagctag caacagtatc aacaggtttt attttggatt
       61 tggaaacgag agtttctggt catgaaaaac ccaaaaaaga aatccggagg attccggatt
      121 gtcaatatgc taaaacgcgg agtagcccgt gtgagcccct ttgggggctt gaagaggctg
      181 ccagccggac ttctgctggg tcatgggccc atcaggatgg tcttggcgat tctagccttt
      241 ttgagattca cggcaatcaa gccatcactg ggtctcatca atagatgggg ttcagtgggg
      301 aaaaaagagg ctatggaaat aataaagaag ttcaagaaag atctggctgc catgctgaga
      361 ataatcaatg ctaggaagga gaagaagaga cgaggcgcag atactagtgt cggaattgtt
      421 ggcctcctgc tgaccacagc tatggcagcg gaggtcacta gacgtgggag tgcatactac
      481 atgtacttgg acagaaacga tgctggggag gccatatctt tcccaaccac attggggatg
      541 aataagtgtt atatacagat catggatctt ggacacatgt gtgatgccac catgagctat
      601 gaatgcccta tgctggatga gggggtagaa ccagatgacg tcgattgttg gtgcaacacg
      661 acgtcaactt gggttgtgta cggaacctgc catcacaaaa aaggtgaagc acggagatct
      721 agaagagctg tgacgctccc ctcccattcc actaggaagc tgcaaacgcg gtcgcaaacc
      781 tggttggaat caagagaata cacaaagcac ttgattagag tcgaaaattg gatattcagg
      841 aaccctggct tcgcgttagc agcagctgcc atcgcttggc ttttgggaag ctcaacgagc
      901 caaaaagtta tatacttggt catgatactg ctgattgccc cggcatacag catcaggtgc
      961 ataggagtca gcaataggga ctttgtggaa ggtatgtcag gtgggacttg ggttgatgtt
     1021 gtcttggaac atggaggttg tgtcaccgta atggcacagg acaaaccgac tgtcgacata
     1081 gagctggtta caacaacagt cagcaacatg gcggaggtaa gatcctactg ctatgaggca
     1141 tcaatatcag acatggcttc ggacagccgc tgcccaacac aaggtgaagc ctaccttgac
     1201 aagcaatcag acactcaata tgtctgcaaa agaacgttag tggacagagg ctggggaaat
     1261 ggatgtggac tttttggcaa agggagcctg gtgacatgcg ctaagtttgc atgctccaag
     1321 aaaatgaccg ggaagagcat ccagccagag aatctggagt accggataat gctgtcagtt
     1381 catggctccc agcacagtgg gatgatcgtt aatgacacag gacatgaaac tgatgagaat
     1441 agagcgaagg ttgagataac gcccaattca ccaagagccg aagccaccct ggggggtttt
     1501 ggaagcctag gactggattg tgaaccgagg acaggccttg acttttcaga tttgtattac
     1561 ttgactatga ataacaagca ctggttggtt cacaaggagt ggttccacga cattccatta
     1621 ccttggcacg ctggggcaga caccggaact ccacactgga acaacaaaga agcactggta
     1681 gagttcaagg acgcacatgc caaaaggcaa actgtcgtgg ttctagggag tcaagaagga
     1741 gcagttcaca cggcccttgc tggagctctg gaggctgaga tggatggtgc aaagggaagg
     1801 ctgtcctctg gccacttgaa atgtcgcctg aaaatggata aacttagatt gaagggcgtg
     1861 tcatactcct tgtgtaccgc agcgttcaca ttcaccaaga tcccggctga aacactgcac
     1921 gggacagtca cagtggaggt acagtacgca gggacagatg gaccttgcaa ggttccagct
     1981 cagatggcgg tggacatgca aactctgacc ccagttggga ggttgataac cgccaacccc
     2041 gtaatcactg aaagcactga gaactctaag atgatgctgg aacttgatcc accatttggg
     2101 gactcttaca ttgtcatagg agtcggggag aagaagatca cccaccactg gcacaggagt
     2161 ggcagcacca ttggaaaagc atttgaagcc actgtgagag gtgccaagag aatggcagtc
     2221 ttgggagata cagcctggga ctttggatca gttggaggcg ctctcaactc attgggcaag
     2281 ggcatccatc aaatttttgg agcagctttc aaatcattgt ttggaggaat gtcctggttc
     2341 tcacaaatcc tcattggaac gttgctgatg tggttgggtc tgaacacaaa gaatggatct
     2401 atttccctca tgtgcttggc cttaggggga gtgttgatct tcttatccac agccgtctct
     2461 gctgatgtgg ggtgctcggt ggacttctca aagaaggaga cgagatgcgg tacaggggtg
     2521 ttcgtctata acgacgttga agcctggagg gacaggtaca agtaccatcc tgactccccc
     2581 cgtagattgg cagcagcagt caagcaagcc tgggaagatg gtatctgcgg gatctcctct
     2641 gtttcaagaa tggaaaacat catgtggaga tcagtagaag gggagctcaa tgcaatcctg
     2701 gaagagaatg gagttcaact gacggtcgtt gtgggatctg taaaaaaccc catgtggaga
     2761 ggtccacaga gattgcccgt gcctgtgaac gagctgcccc acggctggaa ggcttggggg
     2821 aaatcgtact tcgttagagc agcaaagaca aataacagct ttgtcgtgga tggtgacaca
     2881 ctgaaggaat gcccactcaa acatagagca tggaacagct ttcttgtgga ggatcatggg
     2941 ttcggggtat ttcacactag tgtctggctc aaggttagag aagattattc attagagtgt
     3001 gatccagccg ttattggaac agctgttaag ggaaaggagg ctgtacacag tgatctaggc
     3061 tactggattg agagtgagaa gaatgacaca tggaggctga agagggccca tctgatcgag
     3121 atgaaaacat gtgaatggcc aaagtcccac acattgtgga cagatggaat agaagagagt
     3181 gatctgatca tacccaagtc tttagctggg ccactcagcc atcacaatac cagagagggc
     3241 tacaggaccc aaatgaaagg gccatggcac agtgaagagc ttgaaattcg gtttgaggaa
     3301 tgcccaggca ctaaggtcca cgtggaggaa acatgtggaa caagaggacc atctctgaga
     3361 tcaaccactg caagcggaag ggtgatcgag gaatggtgct gcagggagtg cacaatgccc
     3421 ccactgtcgt tccgggctaa agatggctgt tggtatggaa tggagataag gcccaggaaa
     3481 gaaccagaaa gcaacttagt aaggtcagtg gtgactgcag gatcaactga tcacatggat
     3541 cacttctccc ttggagtgct tgtgattctg ctcatggtgc aggaagggct gaagaagaga
     3601 atgaccacaa agatcatcat aagcacatca atggcagtgc tggtagctat gatcctggga
     3661 ggattttcaa tgagtgacct ggctaagctt gcaattttga tgggtgccac cttcgcggaa
     3721 atgaacactg gaggagatgt agctcatctg gcgctgatag cggcattcaa agtcagacca
     3781 gcgttgctgg tatctttcat cttcagagct aattggacac cccgtgaaag catgctgctg
     3841 gccttggcct cgtgtctttt gcaaactgcg atctccgcct tggaaggcga cctgatggtt
     3901 ctcatcaatg gttttgcttt ggcctggttg gcaatacgag cgatggttgt tccacgcact
     3961 gataacatca ccttggcaat cctggctgct ctgacaccac tggcccgggg cacactgctt
     4021 gtggcgtgga gagcaggcct tgctacttgc ggggggttta tgctcctctc tctgaaggga
     4081 aaaggcagtg tgaagaagaa cttaccattt gtcatggccc tgggactaac cgctgtgagg
     4141 ctggtcgacc ccatcaacgt ggtgggactg ctgttgctca caaggagtgg gaagcggagc
     4201 tggcccccta gcgaagtact cacagctgtt ggcctgatat gcgcattggc tggagggttc
     4261 gccaaggcag atatagagat ggctgggccc atggccgcgg tcggtctgct aattgtcagt
     4321 tacgtggtct caggaaagag tgtggacatg tacattgaaa gagcaggtga catcacatgg
     4381 gaaaaagatg cggaagtcac tggaaacagt ccccggctcg atgtggcgct agatgagagt
     4441 ggtgatttct ccctggtgga ggatgacggt ccccccatga gagagatcat actcaaggtg
     4501 gtcctgatga ccatctgtgg catgaaccca atagccatac cctttgcagc tggagcgtgg
     4561 tacgtatacg tgaagactgg aaaaaggagt ggtgctctat gggatgtgcc tgctcccaag
     4621 gaagtaaaaa agggggagac cacagatgga gtgtacagag taatgactcg tagactgcta
     4681 ggttcaacac aggttggagt gggagttatg caagaggggg tctttcacac tatgtggcac
     4741 gtcacaaaag gatccgcgct gagaagcggt gaagggagac ttgatccata ctggggagat
     4801 gtcaagcagg atctggtgtc atactgtggt ccatggaagc tagatgccgc ctgggacggg
     4861 cacagcgagg tgcagctctt ggccgtgccc cccggagaga gagcgaggaa catccagact
     4921 ctgcccggaa tatttaagac aaaggatggg gacattggag cggttgcgct ggattaccca
     4981 gcaggaactt caggatctcc aatcctagac aagtgtggga gagtgatagg actttatggc
     5041 aatggggtcg tgatcaaaaa tgggagttat gttagtgcca tcacccaagg gaggagggag
     5101 gaagagactc ctgttgagtg cttcgagcct tcgatgctga agaagaagca gctaactgtc
     5161 ttagacttgc atcctggagc tgggaaaacc aggagagttc ttcctgaaat agtccgtgaa
     5221 gctataaaaa caagactccg tactgtgatc ttagctccaa ccagggttgt cgctgctgaa
     5281 atggaggaag cccttagagg gcttccagtg cgttatatga caacagcagt caatgtcacc
     5341 cattctggaa cagaaatcgt cgacttaatg tgccatgcca ccttcacttc acgtctacta
     5401 cagccaatca gagtccccaa ctataatctg tatattatgg atgaggccca cttcacagat
     5461 ccctcaagta tagcagcaag aggatacatt tcaacaaggg ttgagatggg cgaggcggct
     5521 gccatcttca tgaccgccac gccaccagga acccgtgacg catttccgga ctccaactca
     5581 ccaattatgg acaccgaagt ggaagtccca gagagagcct ggagctcagg ctttgattgg
     5641 gtgacggatc attctggaaa aacagtttgg tttgttccaa gcgtgaggaa cggcaatgag
     5701 atcgcagctt gtctgacaaa ggctggaaaa cgggtcatac agctcagcag aaagactttt
     5761 gagacagagt tccagaaaac aaaacatcaa gagtgggact ttgtcgtgac aaccgacatt
     5821 tcagagatgg gcgccaactt taaagctgac cgtgtcatag attccaggag atgcctaaag
     5881 ccggtcatac ttgatggcga gagagtcatt ctggctggac ccatgcctgt cacacatgcc
     5941 agcgctgccc agaggagggg gcgcataggc aggaatccca acaaacctgg agatgagtat
     6001 ctgtatggag gtgggtgcgc agagactgac gaagaccatg cacactggct tgaagcaaga
     6061 atgctccttg acaatattta cctccaagat ggcctcatag cctcgctcta tcgacctgag
     6121 gccgacaaag tagcagccat tgagggagag ttcaagctta ggacggagca aaggaagacc
     6181 tttgtggaac tcatgaaaag aggagatctt cctgtttggc tggcctatca ggttgcatct
     6241 gccggaataa cttacacaga tagaagatgg tgctttgatg gcacgaccaa caacaccata
     6301 atggaagaca gtgtgccggc agaggtgtgg accagacacg gagagaaaag agtgctcaaa
     6361 ccgaggtgga tggacgccag agtttgttca gatcatgcgg ccctgaagtc attcaaggag
     6421 tttgccgctg ggaaaagagg agcggctttt ggagtgatgg aagccctggg aacactgcca
     6481 ggacacatga cagagagatt ccaggaagcc attgacaacc tcgctgtgct catgcgggca
     6541 gagactggaa gcaggcctta caaagccgcg gcggcccaat tgccggagac cctagagacc
     6601 attatgcttt tggggttgct gggaacagtc tcgctgggaa tctttttcgt cttgatgagg
     6661 aacaagggca tagggaagat gggctttgga atggtgactc ttggggccag cgcatggctc
     6721 atgtggctct cggaaattga gccagccaga attgcatgtg tcctcattgt tgtgttccta
     6781 ttgctggtgg tgctcatacc tgagccagaa aagcaaagat ctccccagga caaccaaatg
     6841 gcaatcatca tcatggtagc agtaggtctt ctaggcttga tcaccgccaa tgaactcgga
     6901 tggttggaga gaacaaagag tgacctaagc catctaatgg gaaagagaga ggagggagca
     6961 accataggat tctcaatgga cattgacctg cggccagcct cagcttgggc catctatgct
     7021 gccttgacaa ctttcattac cccagccgtc caacatgcag tgaccacttc atacaacaac
     7081 tactccttaa tggcgatggc cacgcaagct ggagtgttgt ttggtatggg caaagggatg
     7141 ccattctacg catgggactt tggagtcccg ctgctaatga taggttgcta ctcacaatta
     7201 acacccctga ccctaatagt ggccatcatt ttgctcgtgg cgcactacat gtacttgatc
     7261 ccagggctgc aggcagcagc tgcgcgtgct gcccagaaga gaacggcagc tggcatcatg
     7321 aagaaccctg ttgtggatgg aatagtggtg actgacattg acacaatgac aattgacccc
     7381 caagtggaga aaaagatggg acaggtgcta ctcatagcag tagccgtctc cagcgccata
     7441 ctgtcgcgga ccgcctgggg gtggggggag gctggggccc tgatcacagc cgcaacttcc
     7501 actttgtggg aaggctctcc gaacaagtac tggaactcct ctacagccac ttcactgtgt
     7561 aacattttta ggggaagtta cttggctgga gcttctctaa tctacacagt aacaagaaac
     7621 gctggcttgg tcaagagacg tgggggtgga acaggagaga ccctgggaga gaaatggaag
     7681 gcccgcttga accagatgtc ggccctggag ttctactcct acaaaaagtc aggcatcacc
     7741 gaggtgtgca gagaagaggc ccgccgcgcc ctcaaggacg gtgtggcaac gggaggccat
     7801 gctgtgtccc gaggaagtgc aaagctgaga tggttggtgg agcggggata cctgcagccc
     7861 tatggaaagg tcattgatct tggatgtggc agagggggct ggagttacta cgccgccacc
     7921 atccgcaaag ttcaagaagt gaaaggatac acaaaaggag gccctggtca tgaagaaccc
     7981 gtgttggtgc aaagctatgg gtggaacata gtccgtctca agagtggggt ggacgtcttt
     8041 catatggcgg ctgagccgtg tgacacgttg ctatgtgaca taggtgagtc atcatctagt
     8101 cctgaagtgg aagaagcacg gacgctcaga gtcctctcca tggtggggga ttggcttgaa
     8161 aaaagaccag gagccttttg tataaaagtg ttgtgcccat acaccagcac tatgatggaa
     8221 accctggagc gactgcagcg taggtatggg ggaggactgg tcagagtgcc actctcccgc
     8281 aactctacac atgagatgta ctgggtctct ggagcgaaaa gcaacaccat aaaaagtgtg
     8341 tccaccacga gccagctcct cttggggcgc atggacgggc ctaggaggcc agtgaaatat
     8401 gaggaggatg tgaatctcgg ctctggcacg cgggctgtgg taagctgcgc tgaagctccc
     8461 aacatgaaga tcattggtaa ccgcattgaa aggatccgca gtgagcacgc ggaaacgtgg
     8521 ttctttgacg agaaccaccc atataggaca tgggcttacc atggaagcta tgaggccccc
     8581 acacaagggt cagcatcctc tctagtaaac ggggttgtca ggctcctgtc aaaaccctgg
     8641 gatgtggtga ctggagtcac aggaatagcc atgaccgaca ccacaccgta tggtcagcaa
     8701 agagttttca aggaaaaagt ggacactagg gtgccagacc cccaagaagg cactcgtcag
     8761 gttatgagca tggtctcttc ctggttgtgg aaagagctag gtaaacacaa acggccacga
     8821 gtctgtacca aagaagagtt catcaacaag gttcgtagca atgcagcatt aggggcaata
     8881 tttgaagagg aaaaagagtg gaagactgca gtggaagctg tgaacgatcc aaggttctgg
     8941 gctctagtgg acaaggaaag agagcaccac ctgagaggag agtgccagag ttgtgtgtac
     9001 aacatgatgg gaaaaagaga aaagaaacaa ggggaatttg gaaaggccaa gggcagccgc
     9061 gccatctggt atatgtggct aggggctaga tttctagagt tcgaagccct tggattcttg
     9121 aacgaggatc actggatggg gagagagaac tcaggaggtg gtgttgaagg gctgggatta
     9181 caaagactcg gatatgtcct agaagagatg agtcgcatac caggaggaag gatgtatgca
     9241 gatgacactg ctggctggga tacccgcatc agcaggtttg atctagagaa tgaagctcta
     9301 atcaccaacc aaatggagaa agggcacagg gccttggcat tggccataat caagtacaca
     9361 taccaaaaca aagtggtaaa ggtccttaga ccagctgaaa aagggaaaac agttatggac
     9421 attatttcga gacaagacca aagggggagc ggacaagttg tcacttacgc tcttaacaca
     9481 tttaccaacc tagtggtgca actcattcgg aatatggagg ctgaggaagt tctagagatg
     9541 caagacttgt ggctgctgcg gaggtcagag aaagtgacca actggttgca gagcaacgga
     9601 tgggataggc tcaaacgaat ggcagtcagt ggagatgatt gcgttgtgaa gccaattgat
     9661 gataggtttg cacatgccct caggttcttg aatgatatgg gaaaagttag gaaggacaca
     9721 caagagtgga aaccctcaac tggatgggac aactgggaag aagttccgtt ttgctcccac
     9781 cacttcaaca agctccatct caaggacggg aggtccattg tggttccctg ccgccaccaa
     9841 gatgaactga ttggccgggc ccgcgtctct ccaggggcgg gatggagcat ccgggagact
     9901 gcttgcctag caaaatcata tgcgcaaatg tggcagctcc tttatttcca cagaagggac
     9961 ctccgactga tggccaatgc catttgttca tctgtgccag ttgactgggt tccaactggg
    10021 agaactacct ggtcaatcca tggaaaggga gaatggatga ccattgaaga catgcttgtg
    10081 gtgtggaaca gagtgtggat tgaggagaac gaccacatgg aagacaagac cccagttacg
    10141 aaatggacag acattcccta tttgggaaaa agggaagact tgtggtgtgg atctctcata
    10201 gggcacagac cgcgcaccac ctgggctgag aacattaaaa acacagtcaa catggtgcgc
    10261 aggatcatag gtgaggaaga aaagtacatg gactacctat ccacccaagt ccgctacttg
    10321 ggtgaagaag ggtctacacc tggagtgctg taagcaccaa tcttaatgtt gtcaggcctg
    10381 ctagtcagcc acagcttggg gaaagctgtg cagcctgtga cccccccagg agaagctggg
    10441 aaaccaagcc tatagtcagg ccgagaacgc catggcacgg aagaagccat gctgcctgtg
    10501 agcccctcag aggacactga gtca

[niman]

Sequences producing significant alignments:

Select:AllNone Selected:0

AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments

Sequences producing significant alignments:

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
Select seq gb|KX838904.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM1-7501 polyprotein gene, complete cds	18525	18525	100%	0.0	100%	KX838904.1
Select seq gb|KX842449.1|	Zika virus isolate ZIKV/Human/USA/2016/ZF10.UR-010 polyprotein gene, complete cds	18498	18498	100%	0.0	99%	KX842449.1
Select seq gb|KX838905.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM2-7719 polyprotein gene, complete cds	18493	18493	100%	0.0	99%	KX838905.1
Select seq gb|KX832731.1|	Zika virus isolate ZIKV/Human/USA/2016/ZL2.SA-Hu0015 polyprotein gene, complete cds	18489	18489	100%	0.0	99%	KX832731.1
Select seq gb|KU853013.1|	Zika virus isolate Dominican Republic/2016/PD2, complete genome	18444	18444	100%	0.0	99%	KU853013.1
Select seq gb|KU853012.1|	Zika virus isolate Dominican Republic/2016/PD1, complete genome	18442	18442	100%	0.0	99%	KU853012.1
Select seq gb|KX673530.1|	Zika virus isolate PHE_semen_Guadeloupe, complete genome	18420	18420	100%	0.0	99%	KX673530.1
Select seq gb|KX838906.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM3-7729 polyprotein gene, complete cds	18411	18411	100%	0.0	99%	KX838906.1
Select seq gb|KX447510.1|	Zika virus isolate 1_0049_PF polyprotein gene, complete cds	18354	18354	100%	0.0	99%	KX447510.1
Select seq gb|KX280026.1|	Zika virus isolate Paraiba_01, complete genome	18348	18348	100%	0.0	99%	KX280026.1
Select seq gb|KX447512.1|	Zika virus isolate 1_0181_PF polyprotein gene, complete cds	18345	18345	100%	0.0	99%	KX447512.1
Select seq gb|KX369547.1|	Zika virus strain PF13/251013-18, complete genome	18345	18345	100%	0.0	99%	KX369547.1
Select seq gb|KU509998.3|	Zika virus strain Haiti/1225/2014, complete genome	18345	18345	100%	0.0	99%	KU509998.3
Select seq gb|KJ776791.2|	Zika virus strain H/PF/2013, complete genome	18339	18339	100%	0.0	99%	KJ776791.2
Select seq gb|KX447509.1|	Zika virus isolate 1_0087_PF polyprotein gene, complete cds	18339	18339	100%	0.0	99%	KX447509.1
Select seq gb|KU991811.1|	Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds	18339	18339	100%	0.0	99%	KU991811.1
Select seq gb|KU729217.2|	Zika virus isolate BeH823339 polyprotein gene, complete cds	18339	18339	100%	0.0	99%	KU729217.2
Select seq gb|KX447513.1|	Zika virus isolate 1_0134_PF polyprotein gene, complete cds	18336	18336	100%	0.0	99%	KX447513.1
Select seq gb|KX197205.1|	Zika virus isolate 9, complete genome	18330	18330	100%	0.0	99%	KX197205.1
Select seq gb|KX447515.1|	Zika virus isolate 1_0030_PF polyprotein gene, complete cds	18330	18330	100%	0.0	99%	KX447515.1
Select seq gb|KX447511.1|	Zika virus isolate 1_0015_PF polyprotein gene, complete cds	18330	18330	100%	0.0	99%	KX447511.1
Select seq gb|KU321639.1|	Zika virus strain ZikaSPH2015, complete genome	18330	18330	100%	0.0	99%	KU321639.1
Select seq gb|KX447514.1|	Zika virus isolate 1_0035_PF polyprotein gene, complete cds	18327	18327	100%	0.0	99%	KX447514.1
Select seq gb|KX051563.1|	Zika virus isolate Haiti/1/2016, complete genome	18327	18327	100%	0.0	99%	KX051563.1
Select seq gb|KX447516.1|	Zika virus isolate 1_0111_PF polyprotein gene, complete cds	18321	18321	100%	0.0	99%	KX447516.1
Select seq gb|KU729218.1|	Zika virus isolate BeH828305 polyprotein gene, complete cds	18321	18321	100%	0.0	99%	KU729218.1
Select seq gb|KU707826.1|	Zika virus isolate SSABR1, complete genome	18321	18321	100%	0.0	99%	KU707826.1
Select seq gb|KU527068.1|	Zika virus strain Natal RGN, complete genome	18321	18321	100%	0.0	99%	KU527068.1
Select seq gb|KU365779.1|	Zika virus strain BeH819966 polyprotein gene, complete cds	18321	18321	100%	0.0	99%	KU365779.1
Select seq gb|KX262887.1|	Zika virus isolate 103451, complete genome	18318	18318	100%	0.0	99%	KX262887.1
Select seq gb|KX197192.1|	Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome	18318	18318	100%	0.0	99%	KX197192.1
Select seq gb|KU926310.1|	Zika virus isolate Rio-S1, complete genome	18318	18318	100%	0.0	99%	KU926310.1
Select seq gb|KU926309.1|	Zika virus isolate Rio-U1, complete genome	18318	18318	100%	0.0	99%	KU926309.1
Select seq gb|KU940228.1|	Zika virus isolate Bahia07, partial genome	18312	18312	100%	0.0	99%	KU940228.1
Select seq gb|KX694534.1|	Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome	18309	18309	100%	0.0	99%	KX694534.1
Select seq gb|KX198135.1|	Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome	18309	18309	100%	0.0	99%	KX198135.1
Select seq gb|KU501217.1|	Zika virus strain 8375 polyprotein gene, complete cds	18309	18309	100%	0.0	99%	KU501217.1
Select seq gb|KU365780.1|	Zika virus strain BeH815744 polyprotein gene, complete cds	18309	18309	100%	0.0	99%	KU365780.1
Select seq gb|KU647676.1|	Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds	18303	18303	100%	0.0	99%	KU647676.1
Select seq gb|KU501216.1|	Zika virus strain 103344 polyprotein gene, complete cds	18303	18303	100%	0.0	99%	KU501216.1
Select seq gb|KU365777.1|	Zika virus strain BeH818995 polyprotein gene, complete cds	18303	18303	100%	0.0	99%	KU365777.1
Select seq gb|KX447517.1|	Zika virus isolate 1_0038_PF polyprotein gene, complete cds	18300	18300	100%	0.0	99%	KX447517.1
Select seq gb|KU758877.1|	Zika virus isolate 17271 polyprotein gene, complete cds	18300	18300	100%	0.0	99%	KU758877.1
Select seq gb|KX247646.1|	Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome	18300	18300	100%	0.0	99%	KX247646.1
Select seq gb|KX156776.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome	18300	18300	100%	0.0	99%	KX156776.1
Select seq gb|KU497555.1|	Zika virus isolate Brazil-ZKV2015, complete genome	18296	18296	99%	0.0	99%	KU497555.1
Select seq gb|KX520666.1|	Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds	18294	18294	100%	0.0	99%	KX520666.1
Select seq gb|KX156774.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome	18294	18294	100%	0.0	99%	KX156774.1
Select seq gb|KU820897.5|	Zika virus isolate FLR polyprotein gene, complete cds	18291	18291	100%	0.0	99%	KU820897.5
Select seq gb|KX247632.1|	Zika virus isolate MEX_I_7 polyprotein gene, complete cds	18291	18291	100%	0.0	99%	KX247632.1
Select seq gb|KX156775.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome	18291	18291	100%	0.0	99%	KX156775.1
Select seq gb|KX087102.1|	Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome	18291	18291	100%	0.0	99%	KX087102.1
Select seq gb|KU365778.1|	Zika virus strain BeH819015 polyprotein gene, complete cds	18291	18291	100%	0.0	99%	KU365778.1
Select seq gb|KU312312.1|	Zika virus isolate Z1106033 polyprotein gene, complete cds	18291	18291	100%	0.0	99%	KU312312.1
Select seq gb|KU922960.1|	Zika virus isolate MEX/InDRE/Sm/2016, complete genome	18285	18285	100%	0.0	99%	KU922960.1
Select seq gb|KX806557.1|	Zika virus isolate TS17-2016, complete genome	18282	18282	100%	0.0	99%	KX806557.1
Select seq gb|KX548902.1|	Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds	18282	18282	100%	0.0	99%	KX548902.1
Select seq gb|KX446951.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome	18282	18282	100%	0.0	99%	KX446951.1
Select seq gb|KU937936.1|	Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds	18282	18282	100%	0.0	99%	KU937936.1
Select seq gb|KU922923.1|	Zika virus isolate MEX/InDRE/Lm/2016, complete genome	18282	18282	100%	0.0	99%	KU922923.1
Select seq gb|KU501215.1|	Zika virus strain PRVABC59, complete genome	18282	18282	100%	0.0	99%	KU501215.1
Select seq gb|KX601168.1|	Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome	18276	18276	100%	0.0	99%	KX601168.1
Select seq gb|KX446950.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome	18276	18276	100%	0.0	99%	KX446950.1
Select seq gb|KX087101.2|	Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome	18276	18276	100%	0.0	99%	KX087101.2
Select seq gb|KU870645.1|	Zika virus isolate FB-GWUH-2016, complete genome	18276	18276	100%	0.0	99%	KU870645.1
Select seq gb|KX702400.1|	Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome	18273	18273	100%	0.0	99%	KX702400.1
Select seq gb|KX377337.1|	Zika virus strain PRVABC-59, complete genome	18273	18273	100%	0.0	99%	KX377337.1
Select seq gb|KX766029.1|	Zika virus isolate R116265, complete genome	18264	18264	100%	0.0	99%	KX766029.1
Select seq gb|KU820898.1|	Zika virus isolate GZ01 polyprotein gene, complete cds	18264	18264	100%	0.0	99%	KU820898.1
Select seq gb|KX056898.1|	Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds	18258	18258	100%	0.0	99%	KX056898.1
Select seq gb|KU955590.1|	Zika virus isolate Z16019 polyprotein gene, complete cds	18258	18258	100%	0.0	99%	KU955590.1
Select seq gb|KX766028.1|	Zika virus isolate R114916, complete genome	18256	18256	100%	0.0	99%	KX766028.1
Select seq gb|KU740184.2|	Zika virus isolate GD01 polyprotein gene, complete cds	18254	18254	100%	0.0	99%	KU740184.2
Select seq gb|KU761564.1|	Zika virus isolate GDZ16001 polyprotein gene, complete cds	18254	18254	100%	0.0	99%	KU761564.1
Select seq gb|KX117076.1|	Zika virus isolate Zhejiang04, complete genome	18249	18249	100%	0.0	99%	KX117076.1
Select seq gb|KX185891.1|	Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds	18240	18240	100%	0.0	99%	KX185891.1
Select seq gb|KU963796.1|	Zika virus isolate SZ-WIV01 polyprotein gene, complete cds	18240	18240	100%	0.0	99%	KU963796.1
Select seq gb|KX253996.1|	Zika virus isolate ZKC2/2016, complete genome	18236	18236	100%	0.0	99%	KX253996.1
Select seq gb|KU955589.1|	Zika virus isolate Z16006 polyprotein gene, complete cds	18236	18236	100%	0.0	99%	KU955589.1
Select seq gb|KU820899.2|	Zika virus isolate ZJ03, complete genome	18236	18236	100%	0.0	99%	KU820899.2
Select seq gb|KX266255.1|	Zika virus isolate ZIKV_SMGC-1, complete genome	18233	18233	100%	0.0	99%	KX266255.1
Select seq gb|KU866423.2|	Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds	18231	18231	100%	0.0	99%	KU866423.2
Select seq gb|KU940224.1|	Zika virus isolate Bahia09, partial genome	18218	18218	99%	0.0	99%	KU940224.1
Select seq gb|KU744693.1|	Zika virus isolate VE_Ganxian, complete genome	18096	18096	100%	0.0	99%	KU744693.1
Select seq gb|KX813683.1|	Zika virus isolate ZKA-16-097 polyprotein gene, complete cds	18069	18069	100%	0.0	99%	KX813683.1
Select seq gb|KU681081.3|	Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome	18015	18015	100%	0.0	99%	KU681081.3
Select seq gb|KX694532.1|	Zika virus strain ZIKV/Homo sapiens/THA/PLCal_ZV/2013, complete genome	17894	17894	100%	0.0	99%	KX694532.1
Select seq gb|KU955593.1|	Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome	17708	17708	100%	0.0	98%	KU955593.1
Select seq gb|JN860885.1|	Zika virus isolate FSS13025 polyprotein gene, partial cds	17708	17708	99%	0.0	98%	JN860885.1
Select seq gb|KF993678.1|	Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds	17661	17661	98%	0.0	99%	KF993678.1
Select seq gb|EU545988.1|	Zika virus polyprotein gene, complete cds	17553	17553	100%	0.0	98%	EU545988.1
Select seq gb|KU681082.3|	Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome	17407	17407	100%	0.0	98%	KU681082.3
Select seq gb|KX601167.1|	Zika virus strain ZIKV/Aedes sp./MYS/P6-740/1966, complete genome	16388	16388	100%	0.0	95%	KX601167.1
Select seq gb|KX694533.1|	Zika virus strain ZIKV/Aedes aegypti/MYS/P6-740/1966, complete genome	16379	16379	100%	0.0	95%	KX694533.1
Select seq gb|HQ234499.1|	Zika virus isolate P6-740 polyprotein gene, partial cds	16379	16379	99%	0.0	95%	HQ234499.1
Select seq gb|KX377336.1|	Zika virus strain P6-740, complete genome	16374	16374	100%	0.0	95%	KX377336.1
Select seq gb|KX447518.1|	Zika virus isolate 1_0117_PF polyprotein gene, partial cds	16202	16202	88%	0.0	99%	KX447518.1

[niman]

[niman]

mp3 discussing Miami Beach Zika sequences

http://recombinomics.co/thedrnimanshow/2016/09/091916.mp3

[niman]

Updated discussion

http://recombinomics.co/thedrnimanshow/2016/09/092416.mp3

[niman]

Sequence Map Update

https://www.google.com/maps/d/u/0/edit?hl=en&mid=1XSxKe6FIecV8f33cQwyc7uylxeU

[niman]

LOCUS       KX838904               10609 bp    RNA     linear   VRL 03-OCT-2016
DEFINITION  Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein
            gene, complete cds.
ACCESSION   KX838904
VERSION     KX838904.2  GI:1072829977
DBLINK      BioProject: PRJNA342539
            BioSample: SAMN05761900
KEYWORDS    .
SOURCE      Zika virus
  ORGANISM  Zika virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Flaviviridae; Flavivirus.
REFERENCE   1  (bases 1 to 10609)
  AUTHORS   Grubaugh,N., Paul,L., Porcelli,M., Vasquez,C., Gangavarupu,K.,
            Oliveira,G., Robles-Sikisaka,R., Michael,S., Isern,S. and
            Andersen,K.
  TITLE     Zika virus sequences from Florida, USA, 2016
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 10609)
  AUTHORS   Grubaugh,N., Paul,L., Porcelli,M., Vasquez,C., Gangavarupu,K.,
            Oliveira,G., Robles-Sikisaka,R., Michael,S., Isern,S. and
            Andersen,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-SEP-2016) Department of Immunology and Microbial
            Science, The Scripps Research Institute, 10550 North Torrey Pines
            Road, IMM-210, La Jolla, CA 92037, USA
REFERENCE   3  (bases 1 to 10609)
  AUTHORS   Grubaugh,N., Paul,L., Porcelli,M., Vasquez,C., Gangavarupu,K.,
            Oliveira,G., Robles-Sikisaka,R., Michael,S., Isern,S. and
            Andersen,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-OCT-2016) Department of Immunology and Microbial
            Science, The Scripps Research Institute, 10550 North Torrey Pines
            Road, IMM-210, La Jolla, CA 92037, USA
  REMARK    Sequence update by submitter
COMMENT     On Oct 3, 2016 this sequence version replaced gi:1063797021.
            
            ##Assembly-Data-START##
            Assembly Method       :: NovoAlign v. V3.04
            Coverage              :: 160,000
            Sequencing Technology :: Illumina
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..10609
                     /organism="Zika virus"
                     /mol_type="genomic RNA"
                     /isolate="ZIKV/Aedes_aegypti/USA/2016/FL01M"
                     /isolation_source="pool of 39 adult mosquitoes"
                     /host="Aedes aegypti"
                     /db_xref="taxon:64320"
                     /country="USA: Miami, Florida"
                     /collection_date="22-Aug-2016"
     CDS             81..10352
                     /codon_start=1
                     /product="polyprotein"
                     /protein_id="AOO53982.1"
                     /db_xref="GI:1063797022"
                     /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI
                     RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK
                     RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI
                     MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT
                     LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV
                     IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE
                     LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG
                     NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET
                     DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF
                     HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE
                     MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG
                     TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG
                     EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG
                     AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC
                     SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR
                     MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK
                     SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE
                     CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI
                     EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR
                     GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSVVTA
                     GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA
                     ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT
                     AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL
                     ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE
                     VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD
                     AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY
                     VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW
                     HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN
                     IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT
                     QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP
                     TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY
                     IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV
                     PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT
                     KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR
                     RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK
                     VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM
                     EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL
                     PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV
                     LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP
                     QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGKREEGATIGFSMDIDLRPA
                     SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL
                     LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV
                     VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP
                     NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ
                     MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK
                     VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH
                     MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM
                     ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP
                     VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG
                     SYEAPTQGSASSLVNGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD
                     PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV
                     EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA
                     RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD
                     TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ
                     DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR
                     LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH
                     FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR
                     DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTIEDMLVVWNRVWIEENDHMEDKT
                     PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGEEEKYMDYLST
                     QVRYLGEEGSTPGVL"
ORIGIN      
        1 cgacagttcg agtttgaagc gaaagctagc aacagtatca acaggtttta ttttggattt
       61 ggaaacgaga gtttctggtc atgaaaaacc caaaaaagaa atccggagga ttccggattg
      121 tcaatatgct aaaacgcgga gtagcccgtg tgagcccctt tgggggcttg aagaggctgc
      181 cagccggact tctgctgggt catgggccca tcaggatggt cttggcgatt ctagcctttt
      241 tgagattcac ggcaatcaag ccatcactgg gtctcatcaa tagatggggt tcagtgggga
      301 aaaaagaggc tatggaaata ataaagaagt tcaagaaaga tctggctgcc atgctgagaa
      361 taatcaatgc taggaaggag aagaagagac gaggcgcaga tactagtgtc ggaattgttg
      421 gcctcctgct gaccacagct atggcagcgg aggtcactag acgtgggagt gcatactaca
      481 tgtacttgga cagaaacgat gctggggagg ccatatcttt cccaaccaca ttggggatga
      541 ataagtgtta tatacagatc atggatcttg gacacatgtg tgatgccacc atgagctatg
      601 aatgccctat gctggatgag ggggtagaac cagatgacgt cgattgttgg tgcaacacga
      661 cgtcaacttg ggttgtgtac ggaacctgcc atcacaaaaa aggtgaagca cggagatcta
      721 gaagagctgt gacgctcccc tcccattcca ctaggaagct gcaaacgcgg tcgcaaacct
      781 ggttggaatc aagagaatac acaaagcact tgattagagt cgaaaattgg atattcagga
      841 accctggctt cgcgttagca gcagctgcca tcgcttggct tttgggaagc tcaacgagcc
      901 aaaaagttat atacttggtc atgatactgc tgattgcccc ggcatacagc atcaggtgca
      961 taggagtcag caatagggac tttgtggaag gtatgtcagg tgggacttgg gttgatgttg
     1021 tcttggaaca tggaggctgt gtcaccgtaa tggcacagga caaaccgact gtcgacatag
     1081 agctggttac aacaacagtc agcaacatgg cggaggtaag atcctactgc tatgaggcat
     1141 caatatcaga catggcttcg gacagccgct gcccaacaca aggtgaagcc taccttgaca
     1201 agcaatcaga cactcaatat gtctgcaaaa gaacgttagt ggacagaggc tggggaaatg
     1261 gatgtggact ttttggcaaa gggagcctgg tgacatgcgc taagtttgca tgctccaaga
     1321 aaatgaccgg gaagagcatc cagccagaga atctggagta ccggataatg ctgtcagttc
     1381 atggctccca gcacagtggg atgatcgtta atgacacagg acatgaaact gatgagaata
     1441 gagcgaaggt tgagataacg cccaattcac caagagccga agccaccctg gggggttttg
     1501 gaagcctagg actggattgt gaaccgagga caggccttga cttttcagat ttgtattact
     1561 tgactatgaa taacaagcac tggttggttc acaaggagtg gttccacgac attccattac
     1621 cttggcacgc tggggcagac accggaactc cacactggaa caacaaagaa gcactggtag
     1681 agttcaagga cgcacatgcc aaaaggcaaa ctgtcgtggt tctagggagt caagaaggag
     1741 cagttcacac ggcccttgct ggagctctgg aggctgagat ggatggtgca aagggaaggc
     1801 tgtcctctgg ccacttgaaa tgtcgcctga aaatggataa acttagattg aagggcgtgt
     1861 catactcctt gtgtaccgca gcgttcacat tcaccaagat cccggctgaa acactgcacg
     1921 ggacagtcac agtggaggta cagtacgcag ggacagatgg accttgcaag gttccagctc
     1981 agatggcggt ggacatgcaa actctgaccc cagttgggag gttgataacc gccaaccccg
     2041 taatcactga aagcactgag aactctaaga tgatgctgga acttgatcca ccatttgggg
     2101 actcttacat tgtcatagga gtcggggaga agaagatcac ccaccactgg cacaggagtg
     2161 gcagcaccat tggaaaagca tttgaagcca ctgtgagagg tgccaagaga atggcagtct
     2221 tgggagatac agcctgggac tttggatcag ttggaggcgc tctcaactca ttgggcaagg
     2281 gcatccatca aatttttgga gcagctttca aatcattgtt tggaggaatg tcctggttct
     2341 cacaaatcct cattggaacg ttgctgatgt ggttgggtct gaacacaaag aatggatcta
     2401 tttccctcat gtgcttggcc ttagggggag tgttgatctt cttatccaca gccgtctctg
     2461 ctgatgtggg gtgctcggtg gacttctcaa agaaggagac gagatgcggt acaggggtgt
     2521 tcgtctataa cgacgttgaa gcctggaggg acaggtacaa gtaccatcct gactcccccc
     2581 gtagattggc agcagcagtc aagcaagcct gggaagatgg tatctgcggg atctcctctg
     2641 tttcaagaat ggaaaacatc atgtggagat cagtagaagg ggagctcaat gcaatcctgg
     2701 aagagaatgg agttcaactg acggtcgttg tgggatctgt aaaaaacccc atgtggagag
     2761 gtccacagag attgcccgtg cctgtgaacg agctgcccca cggctggaag gcttggggga
     2821 aatcgtactt cgttagagca gcaaagacaa ataacagctt tgtcgtggat ggtgacacac
     2881 tgaaggaatg cccactcaaa catagagcat ggaacagctt tcttgtggag gatcatgggt
     2941 tcggggtatt tcacactagt gtctggctca aggttagaga agattattca ttagagtgtg
     3001 atccagccgt tattggaaca gctgttaagg gaaaggaggc tgtacacagt gatctaggct
     3061 actggattga gagtgagaag aatgacacat ggaggctgaa gagggcccat ctgatcgaga
     3121 tgaaaacatg tgaatggcca aagtcccaca cattgtggac agatggaata gaagagagtg
     3181 atctgatcat acccaagtct ttagctgggc cactcagcca tcacaatacc agagagggct
     3241 acaggaccca aatgaaaggg ccatggcaca gtgaagagct tgaaattcgg tttgaggaat
     3301 gcccaggcac taaggtccac gtggaggaaa catgtggaac aagaggacca tctctgagat
     3361 caaccactgc aagcggaagg gtgatcgagg aatggtgctg cagggagtgc acaatgcccc
     3421 cactgtcgtt ccgggctaaa gatggctgtt ggtatggaat ggagataagg cccaggaaag
     3481 aaccagaaag caacttagta aggtcagtgg tgactgcagg atcaactgat cacatggatc
     3541 acttctccct tggagtgctt gtgattctgc tcatggtgca ggaagggctg aagaagagaa
     3601 tgaccacaaa gatcatcata agcacatcaa tggcagtgct ggtagctatg atcctgggag
     3661 gattttcaat gagtgacctg gctaagcttg caattttgat gggtgccacc ttcgcggaaa
     3721 tgaacactgg aggagatgta gctcatctgg cgctgatagc ggcattcaaa gtcagaccag
     3781 cgttgctggt atctttcatc ttcagagcta attggacacc ccgtgaaagc atgctgctgg
     3841 ccttggcctc gtgtcttttg caaactgcga tctccgcctt ggaaggcgac ctgatggttc
     3901 tcatcaatgg ktttgctttg gcctggttgg caatacgagc gatggttgtt ccacgcactg
     3961 ataacatcac cttggcaatc ctggctgctc tgacaccact ggcccggggc acactgcttg
     4021 tggcgtggag agcaggcctt gctacttgcg gggggtttat gctcctctct ctgaagggaa
     4081 aaggcagtgt gaagaagaac ttaccatttg tcatggccct gggactaacc gctgtgaggc
     4141 tggtcgaccc catcaacgtg gtgggactgc tgttgctcac aaggagtggg aagcggagct
     4201 ggccccctag cgaagtactc acagctgttg gcctgatatg cgcattggct ggagggttcg
     4261 ccaaggcaga tatagagatg gctgggccca tggccgcggt cggtctgcta attgtcagtt
     4321 acgtggtctc aggaaagagt gtggacatgt acattgaaag agcaggtgac atcacatggg
     4381 aaaaagatgc ggaagtcact ggaaacagtc cccggctcga tgtggcgcta gatgagagtg
     4441 gtgatttctc cctggtggag gatgacggtc cccccatgag agagatcata ctcaaggtgg
     4501 tcctgatgac catctgtggc atgaacccaa tagccatacc ctttgcagct ggagcgtggt
     4561 acgtatacgt gaagactgga aaaaggagtg gtgctctatg ggatgtgcct gctcccaagg
     4621 aagtaaaaaa gggggagacc acagatggag tgtacagagt aatgactcgt agactgctag
     4681 gttcaacaca ggttggagtg ggagttatgc aagagggggt ctttcacact atgtggcacg
     4741 tcacaaaagg atccgcgctg agaagcggtg aagggagact tgatccatac tggggagatg
     4801 tcaagcagga tctggtgtca tactgtggtc catggaagct agatgccgcc tgggacgggc
     4861 acagcgaggt gcagctcttg gccgtgcccc ccggagagag agcgaggaac atccagactc
     4921 tgcccggaat atttaagaca aaggatgggg acattggagc ggttgcgctg gattacccag
     4981 caggaacttc aggatctcca atcctagaca agtgtgggag agtgatagga ctttatggca
     5041 atggggtcgt gatcaaaaat gggagttatg ttagtgccat cacccaaggg aggagggagg
     5101 aagagactcc tgttgagtgc ttcgagcctt cgatgctgaa gaagaagcag ctaactgtct
     5161 tagacttgca tcctggagct gggaaaacca ggagagttct tcctgaaata gtccgtgaag
     5221 ctataaaaac aagactccgt actgtgatct tagctccaac cagggttgtc gctgctgaaa
     5281 tggaggaagc ccttagaggg cttccagtgc gttatatgac aacagcagtc aatgtcaccc
     5341 attctggaac agaaatcgtc gacttaatgt gccatgccac cttcacttca cgtctactac
     5401 agccaatcag agtccccaac tataatctgt atattatgga tgaggcccac ttcacagatc
     5461 cctcaagtat agcagcaaga ggatacattt caacaagggt tgagatgggc gaggcggctg
     5521 ccatcttcat gaccgccacg ccaccaggaa cccgtgacgc atttccggac tccaactcac
     5581 caattatgga caccgaagtg gaagtcccag agagagcctg gagctcaggc tttgattggg
     5641 tgacggatca ttctggaaaa acagtttggt ttgttccaag cgtgaggaac ggcaatgaga
     5701 tcgcagcttg tctgacaaag gctggaaaac gggtcataca gctcagcaga aagacttttg
     5761 agacagagtt ccagaaaaca aaacatcaag agtgggactt tgtcgtgaca accgacattt
     5821 cagagatggg cgccaacttt aaagctgacc gtgtcataga ttccaggaga tgcctaaagc
     5881 cggtcatact tgatggcgag agagtcattc tggctggacc catgcctgtc acacatgcca
     5941 gcgctgccca gaggaggggg cgcataggca ggaatcccaa caaacctgga gatgagtatc
     6001 tgtatggagg tgggtgcgca gagactgacg aagaccatgc acactggctt gaagcaagaa
     6061 tgctccttga caatatttac ctccaagatg gcctcatagc ctcgctctat cgacctgagg
     6121 ccgacaaagt agcagccatt gagggagagt tcaagcttag gacggagcaa aggaagacct
     6181 ttgtggaact catgaaaaga ggagatcttc ctgtttggct ggcctatcag gttgcatctg
     6241 ccggaataac ttacacagat agaagatggt gctttgatgg cacgaccaac aacaccataa
     6301 tggaagacag tgtgccggca gaggtgtgga ccagacacgg agagaaaaga gtgctcaaac
     6361 cgaggtggat ggacgccaga gtttgttcag atcatgcggc cctgaagtca ttcaaggagt
     6421 ttgccgctgg gaaaagagga gcggcttttg gagtgatgga agccctggga acactgccag
     6481 gacacatgac agagagattc caggaagcca ttgacaacct cgctgtgctc atgcgggcag
     6541 agactggaag caggccttac aaagccgcgg cggcccaatt gccggagacc ctagagacca
     6601 ttatgctttt ggggttgctg ggaacagtct cgctgggaat ctttttcgtc ttgatgagga
     6661 acaagggcat agggaagatg ggctttggaa tggtgactct tggggccagc gcatggctca
     6721 tgtggctctc ggaaattgag ccagccagaa ttgcatgtgt cctcattgtt gtgttcctat
     6781 tgctggtggt gctcatacct gagccagaaa agcaaagatc tccccaggac aaccaaatgg
     6841 caatcatcat catggtagca gtaggtcttc taggcttgat caccgccaat gaactcggat
     6901 ggttggagag aacaaagagt gacctaagcc atctaatggg aaagagagag gagggagcaa
     6961 ccataggatt ctcaatggac attgacctgc ggccagcctc agcttgggcc atctatgctg
     7021 ccttgacaac tttcattacc ccagccgtcc aacatgcagt gaccacttca tacaacaact
     7081 actccttaat ggcgatggcc acgcaagctg gagtgttgtt tggtatgggc aaagggatgc
     7141 cattctacgc atgggacttt ggagtcccgc tgctaatgat aggttgctac tcacaattaa
     7201 cacccctgac cctaatagtg gccatcattt tgctcgtggc gcactacatg tacttgatcc
     7261 cagggctgca ggcagcagct gcgcgtgctg cccagaagag aacggcagct ggcatcatga
     7321 agaaccctgt tgtggatgga atagtggtga ctgacattga cacaatgaca attgaccccc
     7381 aagtggagaa aaagatggga caggtgctac tcatagcagt agccgtctcc agcgccatac
     7441 tgtcgcggac cgcctggggg tggggggagg ctggggccct gatcacagcc gcaacttcca
     7501 ctttgtggga aggctctccg aacaagtact ggaactcctc tacagccact tcactgtgta
     7561 acatttttag gggaagttac ttggctggag cttctctaat ctacacagta acaagaaacg
     7621 ctggcttggt caagagacgt gggggtggaa caggagagac cctgggagag aaatggaagg
     7681 cccgcttgaa ccagatgtcg gccctggagt tctactccta caaaaagtca ggcatcaccg
     7741 aggtgtgcag agaagaggcc cgccgcgccc tcaaggacgg tgtggcaacg ggaggccatg
     7801 ctgtgtcccg aggaagtgca aagctgagat ggttggtgga gcggggatac ctgcagccct
     7861 atggaaaggt cattgatctt ggatgtggca gagggggctg gagttactac gccgccacca
     7921 tccgcaaagt tcaagaagtg aaaggataca caaaaggagg ccctggtcat gaagaacccg
     7981 tgttggtgca aagctatggg tggaacatag tccgtctcaa gagtggggtg gacgtctttc
     8041 atatggcggc tgagccgtgt gacacgttgc tatgtgacat aggtgagtca tcatctagtc
     8101 ctgaagtgga agaagcacgg acgctcagag tcctctccat ggtgggggat tggcttgaaa
     8161 aaagaccagg agccttttgt ataaaagtgt tgtgcccata caccagcact atgatggaaa
     8221 ccctggagcg actgcagcgt aggtatgggg gaggactggt cagagtgcca ctctcccgca
     8281 actctacaca tgagatgtac tgggtctctg gagcgaaaag caacaccata aaaagtgtgt
     8341 ccaccacgag ccagctcctc ttggggcgca tggacgggcc taggaggcca gtgaaatatg
     8401 aggaggatgt gaatctcggc tctggcacgc gggctgtggt aagctgcgct gaagctccca
     8461 acatgaagat cattggtaac cgcattgaaa ggatccgcag tgagcacgcg gaaacgtggt
     8521 tctttgacga gaaccaccca tataggacat gggcttacca tggaagctat gaggccccca
     8581 cacaagggtc agcatcctct ctagtaaacg gggttgtcag gctcctgtca aaaccctggg
     8641 atgtggtgac tggagtcaca ggaatagcca tgaccgacac cacaccgtat ggtcagcaaa
     8701 gagttttcaa ggaaaaagtg gacactaggg tgccagaccc ccaagaaggc actcgtcagg
     8761 ttatgagcat ggtctcttcc tggttgtgga aagagctagg taaacacaaa cggccacgag
     8821 tctgtaccaa agaagagttc atcaacaagg ttcgtagcaa tgcagcatta ggggcaatat
     8881 ttgaagagga aaaagagtgg aagactgcag tggaagctgt gaacgatcca aggttctggg
     8941 ctctagtgga caaggaaaga gagcaccacc tgagaggaga gtgccagagt tgtgtgtaca
     9001 acatgatggg aaaaagagaa aagaaacaag gggaatttgg aaaggccaag ggcagccgcg
     9061 ccatctggta tatgtggcta ggggctagat ttctagagtt cgaagccctt ggattcttga
     9121 acgaggatca ctggatgggg agagagaact caggaggtgg tgttgaaggg ctgggattac
     9181 aaagactcgg atatgtccta gaagagatga gtcgcatacc aggaggaagg atgtatgcag
     9241 atgacactgc tggctgggat acccgcatca gcaggtttga tctagagaat gaagctctaa
     9301 tcaccaacca aatggagaaa gggcacaggg ccttggcatt ggccataatc aagtacacat
     9361 accaaaacaa agtggtaaag gtccttagac cagctgaaaa agggaaaaca gttatggaca
     9421 ttatttcgag acaagaccaa agggggagcg gacaagttgt cacttacgct cttaacacat
     9481 ttaccaacct agtggtgcaa ctcattcgga atatggaggc tgaggaagtt ctagagatgc
     9541 aagacttgtg gctgctgcgg aggtcagaga aagtgaccaa ctggttgcag agcaacggat
     9601 gggataggct caaacgaatg gcagtcagtg gagatgattg cgttgtgaag ccaattgatg
     9661 ataggtttgc acatgccctc aggttcttga atgatatggg aaaagttagg aaggacacac
     9721 aagagtggaa accctcaact ggatgggaca actgggaaga agttccgtty tgctcccacc
     9781 acttcaacaa gctccatctc aaggacggga ggtccattgt ggttccctgc cgccaccaag
     9841 atgaactgat tggccgggcc cgcgtctctc caggggcggg atggagcatc cgggagactg
     9901 cttgcctagc aaaatcatat gcgcaaatgt ggcagctcct ttatttccac agaagggacc
     9961 tccgactgat ggccaatgcc atttgttcat ctgtgccagt tgactgggtt ccaactggga
    10021 gaactacctg gtcaatccat ggaaagggag aatggatgac cattgaagac atgcttgtgg
    10081 tgtggaacag agtgtggatt gaggagaacg accacatgga agacaagacc ccagttacga
    10141 aatggacaga cattccctat ttgggaaaaa gggaagactt gtggtgtgga tctctcatag
    10201 ggcacagacc gcgcaccacc tgggctgaga acattaaaaa cacagtcaac atggtgcgca
    10261 ggatcatagg tgaggaagaa aagtacatgg actacctatc cacccaagtc cgctacttgg
    10321 gtgaagaagg gtctacacct ggagtgctgt aagcaccaat cttaatgttg tcaggcctgc
    10381 tagtcagcca cagcttgggg aaagctgtgc agcctgtgac ccccccagga gaagctggga
    10441 aaccaagcct atagtcaggc cgagaacgcc atggcacgga agaagccatg ctgcctgtga
    10501 gcccctcaga ggacactgag tcaaaaaacc ccacgcgctt ggaggcgcag gatgggaaaa
    10561 gaaggtggcg accttcccca cccttcaatc tggggcctga actggagat

[niman]

Sequences producing significant alignments:

Select:AllNone Selected:0

AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments

Sequences producing significant alignments:

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
Select seq gb|KX838904.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM1-7501 polyprotein gene, complete cds	18514	18514	100%	0.0	99%	KX838904.1
Select seq gb|KX842449.1|	Zika virus isolate ZIKV/Human/USA/2016/ZF10.UR-010 polyprotein gene, complete cds	18496	18496	100%	0.0	99%	KX842449.1
Select seq gb|KX832731.1|	Zika virus isolate ZIKV/Human/USA/2016/ZL2.SA-Hu0015 polyprotein gene, complete cds	18487	18487	100%	0.0	99%	KX832731.1
Select seq gb|KX838905.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM2-7719 polyprotein gene, complete cds	18484	18484	100%	0.0	99%	KX838905.1
Select seq gb|KU853013.1|	Zika virus isolate Dominican Republic/2016/PD2, complete genome	18433	18433	100%	0.0	99%	KU853013.1
Select seq gb|KU853012.1|	Zika virus isolate Dominican Republic/2016/PD1, complete genome	18433	18433	100%	0.0	99%	KU853012.1
Select seq gb|KX673530.1|	Zika virus isolate PHE_semen_Guadeloupe, complete genome	18411	18411	100%	0.0	99%	KX673530.1
Select seq gb|KX838906.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM3-7729 polyprotein gene, complete cds	18402	18402	100%	0.0	99%	KX838906.1
Select seq gb|KX447510.1|	Zika virus isolate 1_0049_PF polyprotein gene, complete cds	18343	18343	100%	0.0	99%	KX447510.1
Select seq gb|KX280026.1|	Zika virus isolate Paraiba_01, complete genome	18339	18339	100%	0.0	99%	KX280026.1
Select seq gb|KX447512.1|	Zika virus isolate 1_0181_PF polyprotein gene, complete cds	18334	18334	100%	0.0	99%	KX447512.1
Select seq gb|KX369547.1|	Zika virus strain PF13/251013-18, complete genome	18334	18334	100%	0.0	99%	KX369547.1
Select seq gb|KU509998.3|	Zika virus strain Haiti/1225/2014, complete genome	18334	18334	100%	0.0	99%	KU509998.3
Select seq gb|KJ776791.2|	Zika virus strain H/PF/2013, complete genome	18330	18330	100%	0.0	99%	KJ776791.2
Select seq gb|KX447509.1|	Zika virus isolate 1_0087_PF polyprotein gene, complete cds	18330	18330	100%	0.0	99%	KX447509.1
Select seq gb|KU991811.1|	Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds	18330	18330	100%	0.0	99%	KU991811.1
Select seq gb|KU729217.2|	Zika virus isolate BeH823339 polyprotein gene, complete cds	18330	18330	100%	0.0	99%	KU729217.2
Select seq gb|KX447513.1|	Zika virus isolate 1_0134_PF polyprotein gene, complete cds	18325	18325	100%	0.0	99%	KX447513.1
Select seq gb|KX811222.1|	Zika virus isolate Brazil_2015_MG, complete genome	18321	18321	100%	0.0	99%	KX811222.1
Select seq gb|KX197205.1|	Zika virus isolate 9, complete genome	18321	18321	100%	0.0	99%	KX197205.1
Select seq gb|KX447515.1|	Zika virus isolate 1_0030_PF polyprotein gene, complete cds	18321	18321	100%	0.0	99%	KX447515.1
Select seq gb|KX447511.1|	Zika virus isolate 1_0015_PF polyprotein gene, complete cds	18321	18321	100%	0.0	99%	KX447511.1
Select seq gb|KU321639.1|	Zika virus strain ZikaSPH2015, complete genome	18321	18321	100%	0.0	99%	KU321639.1
Select seq gb|KX879604.1|	Zika virus isolate SN089, complete genome	18316	18316	100%	0.0	99%	KX879604.1
Select seq gb|KX447514.1|	Zika virus isolate 1_0035_PF polyprotein gene, complete cds	18316	18316	100%	0.0	99%	KX447514.1
Select seq gb|KX051563.1|	Zika virus isolate Haiti/1/2016, complete genome	18316	18316	100%	0.0	99%	KX051563.1
Select seq gb|KX447516.1|	Zika virus isolate 1_0111_PF polyprotein gene, complete cds	18312	18312	100%	0.0	99%	KX447516.1
Select seq gb|KU729218.1|	Zika virus isolate BeH828305 polyprotein gene, complete cds	18312	18312	100%	0.0	99%	KU729218.1
Select seq gb|KU707826.1|	Zika virus isolate SSABR1, complete genome	18312	18312	100%	0.0	99%	KU707826.1
Select seq gb|KU527068.1|	Zika virus strain Natal RGN, complete genome	18312	18312	100%	0.0	99%	KU527068.1
Select seq gb|KU365779.1|	Zika virus strain BeH819966 polyprotein gene, complete cds	18312	18312	100%	0.0	99%	KU365779.1
Select seq gb|KX879603.1|	Zika virus isolate SN062, complete genome	18307	18307	100%	0.0	99%	KX879603.1
Select seq gb|KX262887.1|	Zika virus isolate 103451, complete genome	18307	18307	100%	0.0	99%	KX262887.1
Select seq gb|KX197192.1|	Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome	18307	18307	100%	0.0	99%	KX197192.1
Select seq gb|KU926310.1|	Zika virus isolate Rio-S1, complete genome	18307	18307	100%	0.0	99%	KU926310.1
Select seq gb|KU926309.1|	Zika virus isolate Rio-U1, complete genome	18307	18307	100%	0.0	99%	KU926309.1
Select seq gb|KU940228.1|	Zika virus isolate Bahia07, partial genome	18303	18303	100%	0.0	99%	KU940228.1
Select seq gb|KX694534.1|	Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome	18298	18298	100%	0.0	99%	KX694534.1
Select seq gb|KX198135.1|	Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome	18298	18298	100%	0.0	99%	KX198135.1
Select seq gb|KU501217.1|	Zika virus strain 8375 polyprotein gene, complete cds	18298	18298	100%	0.0	99%	KU501217.1
Select seq gb|KU365780.1|	Zika virus strain BeH815744 polyprotein gene, complete cds	18298	18298	100%	0.0	99%	KU365780.1
Select seq gb|KU647676.1|	Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds	18294	18294	100%	0.0	99%	KU647676.1
Select seq gb|KU501216.1|	Zika virus strain 103344 polyprotein gene, complete cds	18294	18294	100%	0.0	99%	KU501216.1
Select seq gb|KU365777.1|	Zika virus strain BeH818995 polyprotein gene, complete cds	18294	18294	100%	0.0	99%	KU365777.1
Select seq gb|KX447517.1|	Zika virus isolate 1_0038_PF polyprotein gene, complete cds	18289	18289	100%	0.0	99%	KX447517.1
Select seq gb|KU758877.1|	Zika virus isolate 17271 polyprotein gene, complete cds	18289	18289	100%	0.0	99%	KU758877.1
Select seq gb|KX247646.1|	Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome	18289	18289	100%	0.0	99%	KX247646.1
Select seq gb|KX156776.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome	18289	18289	100%	0.0	99%	KX156776.1
Select seq gb|KX520666.1|	Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds	18285	18285	100%	0.0	99%	KX520666.1
Select seq gb|KX156774.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome	18285	18285	100%	0.0	99%	KX156774.1
Select seq gb|KU497555.1|	Zika virus isolate Brazil-ZKV2015, complete genome	18285	18285	99%	0.0	99%	KU497555.1
Select seq gb|KU820897.5|	Zika virus isolate FLR polyprotein gene, complete cds	18280	18280	100%	0.0	99%	KU820897.5
Select seq gb|KX247632.1|	Zika virus isolate MEX_I_7 polyprotein gene, complete cds	18280	18280	100%	0.0	99%	KX247632.1
Select seq gb|KX156775.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome	18280	18280	100%	0.0	99%	KX156775.1
Select seq gb|KX087102.1|	Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome	18280	18280	100%	0.0	99%	KX087102.1
Select seq gb|KU365778.1|	Zika virus strain BeH819015 polyprotein gene, complete cds	18280	18280	100%	0.0	99%	KU365778.1
Select seq gb|KU312312.1|	Zika virus isolate Z1106033 polyprotein gene, complete cds	18280	18280	100%	0.0	99%	KU312312.1
Select seq gb|KU922960.1|	Zika virus isolate MEX/InDRE/Sm/2016, complete genome	18276	18276	100%	0.0	99%	KU922960.1
Select seq gb|KX856011.1|	Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome	18271	18271	100%	0.0	99%	KX856011.1
Select seq gb|KX806557.1|	Zika virus isolate TS17-2016, complete genome	18271	18271	100%	0.0	99%	KX806557.1
Select seq gb|KX548902.1|	Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds	18271	18271	100%	0.0	99%	KX548902.1
Select seq gb|KX446951.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome	18271	18271	100%	0.0	99%	KX446951.1
Select seq gb|KU937936.1|	Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds	18271	18271	100%	0.0	99%	KU937936.1
Select seq gb|KU922923.1|	Zika virus isolate MEX/InDRE/Lm/2016, complete genome	18271	18271	100%	0.0	99%	KU922923.1
Select seq gb|KU501215.1|	Zika virus strain PRVABC59, complete genome	18271	18271	100%	0.0	99%	KU501215.1
Select seq gb|KX601168.1|	Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome	18267	18267	100%	0.0	99%	KX601168.1
Select seq gb|KX446950.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome	18267	18267	100%	0.0	99%	KX446950.1
Select seq gb|KX087101.2|	Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome	18267	18267	100%	0.0	99%	KX087101.2
Select seq gb|KU870645.1|	Zika virus isolate FB-GWUH-2016, complete genome	18267	18267	100%	0.0	99%	KU870645.1
Select seq gb|KX702400.1|	Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome	18262	18262	100%	0.0	99%	KX702400.1
Select seq gb|KX377337.1|	Zika virus strain PRVABC-59, complete genome	18262	18262	100%	0.0	99%	KX377337.1
Select seq gb|KX766029.1|	Zika virus isolate R116265, complete genome	18253	18253	100%	0.0	99%	KX766029.1
Select seq gb|KU820898.1|	Zika virus isolate GZ01 polyprotein gene, complete cds	18253	18253	100%	0.0	99%	KU820898.1
Select seq gb|KX056898.1|	Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds	18249	18249	100%	0.0	99%	KX056898.1
Select seq gb|KU955590.1|	Zika virus isolate Z16019 polyprotein gene, complete cds	18249	18249	100%	0.0	99%	KU955590.1
Select seq gb|KX766028.1|	Zika virus isolate R114916, complete genome	18245	18245	100%	0.0	99%	KX766028.1
Select seq gb|KU740184.2|	Zika virus isolate GD01 polyprotein gene, complete cds	18244	18244	100%	0.0	99%	KU740184.2
Select seq gb|KU761564.1|	Zika virus isolate GDZ16001 polyprotein gene, complete cds	18244	18244	100%	0.0	99%	KU761564.1
Select seq gb|KX117076.1|	Zika virus isolate Zhejiang04, complete genome	18240	18240	100%	0.0	99%	KX117076.1
Select seq gb|KX185891.1|	Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds	18231	18231	100%	0.0	99%	KX185891.1
Select seq gb|KU963796.1|	Zika virus isolate SZ-WIV01 polyprotein gene, complete cds	18231	18231	100%	0.0	99%	KU963796.1
Select seq gb|KX253996.1|	Zika virus isolate ZKC2/2016, complete genome	18226	18226	100%	0.0	99%	KX253996.1
Select seq gb|KU955589.1|	Zika virus isolate Z16006 polyprotein gene, complete cds	18226	18226	100%	0.0	99%	KU955589.1
Select seq gb|KU820899.2|	Zika virus isolate ZJ03, complete genome	18226	18226	100%	0.0	99%	KU820899.2
Select seq gb|KX266255.1|	Zika virus isolate ZIKV_SMGC-1, complete genome	18222	18222	100%	0.0	99%	KX266255.1
Select seq gb|KU866423.2|	Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds	18222	18222	100%	0.0	99%	KU866423.2
Select seq gb|KU940224.1|	Zika virus isolate Bahia09, partial genome	18208	18208	99%	0.0	99%	KU940224.1
Select seq gb|KU744693.1|	Zika virus isolate VE_Ganxian, complete genome	18090	18090	100%	0.0	99%	KU744693.1
Select seq gb|KX827309.1|	Zika virus isolate ZKA-16-291 polyprotein gene, complete cds	18072	18072	100%	0.0	99%	KX827309.1
Select seq gb|KX813683.1|	Zika virus isolate ZKA-16-097 polyprotein gene, complete cds	18060	18060	100%	0.0	99%	KX813683.1
Select seq gb|KU681081.3|	Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome	18006	18006	100%	0.0	99%	KU681081.3
Select seq gb|KX694532.1|	Zika virus strain ZIKV/Homo sapiens/THA/PLCal_ZV/2013, complete genome	17883	17883	100%	0.0	99%	KX694532.1
Select seq gb|KU955593.1|	Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome	17699	17699	100%	0.0	98%	KU955593.1
Select seq gb|JN860885.1|	Zika virus isolate FSS13025 polyprotein gene, partial cds	17697	17697	99%	0.0	98%	JN860885.1
Select seq gb|KF993678.1|	Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds	17652	17652	98%	0.0	99%	KF993678.1
Select seq gb|EU545988.1|	Zika virus polyprotein gene, complete cds	17544	17544	100%	0.0	98%	EU545988.1
Select seq gb|KU681082.3|	Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome	17396	17396	100%	0.0	98%	KU681082.3
Select seq gb|KX601167.1|	Zika virus strain ZIKV/Aedes sp./MYS/P6-740/1966, complete genome	16377	16377	100%	0.0	95%	KX601167.1
Select seq gb|HQ234499.1|	Zika virus isolate P6-740 polyprotein gene, partial cds	16370	16370	99%	0.0	95%	HQ234499.1
Select seq gb|KX694533.1|	Zika virus strain ZIKV/Aedes aegypti/MYS/P6-740/1966, complete genome	16368	16368	100%	0.0	95%	KX694533.1

[niman]

LOCUS       KX838905               10608 bp    RNA     linear   VRL 03-OCT-2016
DEFINITION  Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein
            gene, complete cds.
ACCESSION   KX838905
VERSION     KX838905.2  GI:1072829978
DBLINK      BioProject: PRJNA342539
            BioSample: SAMN05761899
KEYWORDS    .
SOURCE      Zika virus
  ORGANISM  Zika virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Flaviviridae; Flavivirus.
REFERENCE   1  (bases 1 to 10608)
  AUTHORS   Grubaugh,N., Paul,L., Porcelli,M., Vasquez,C., Gangavarupu,K.,
            Oliveira,G., Robles-Sikisaka,R., Michael,S., Isern,S. and
            Andersen,K.
  TITLE     Zika virus sequences from Florida, USA, 2016
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 10608)
  AUTHORS   Grubaugh,N., Paul,L., Porcelli,M., Vasquez,C., Gangavarupu,K.,
            Oliveira,G., Robles-Sikisaka,R., Michael,S., Isern,S. and
            Andersen,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-SEP-2016) Department of Immunology and Microbial
            Science, The Scripps Research Institute, 10550 North Torrey Pines
            Road, IMM-210, La Jolla, CA 92037, USA
REFERENCE   3  (bases 1 to 10608)
  AUTHORS   Grubaugh,N., Paul,L., Porcelli,M., Vasquez,C., Gangavarupu,K.,
            Oliveira,G., Robles-Sikisaka,R., Michael,S., Isern,S. and
            Andersen,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-OCT-2016) Department of Immunology and Microbial
            Science, The Scripps Research Institute, 10550 North Torrey Pines
            Road, IMM-210, La Jolla, CA 92037, USA
  REMARK    Sequence update by submitter
COMMENT     On Oct 3, 2016 this sequence version replaced gi:1063797023.
            
            ##Assembly-Data-START##
            Assembly Method       :: NovoAlign v. V3.04
            Coverage              :: 160,000
            Sequencing Technology :: Illumina
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..10608
                     /organism="Zika virus"
                     /mol_type="genomic RNA"
                     /isolate="ZIKV/Aedes_aegypti/USA/2016/FL02M"
                     /isolation_source="pool of 25 adult mosquitoes"
                     /host="Aedes aegypti"
                     /db_xref="taxon:64320"
                     /country="USA: Miami, Florida"
                     /collection_date="23-Aug-2016"
     CDS             80..10351
                     /codon_start=1
                     /product="polyprotein"
                     /protein_id="AOO53983.1"
                     /db_xref="GI:1063797024"
                     /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI
                     RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK
                     RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI
                     MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT
                     LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV
                     IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE
                     LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG
                     NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET
                     DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF
                     HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE
                     MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG
                     TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG
                     EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG
                     AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC
                     SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR
                     MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK
                     SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE
                     CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI
                     EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR
                     GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSVVTA
                     GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA
                     ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT
                     AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL
                     ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE
                     VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD
                     AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY
                     VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW
                     HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN
                     IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT
                     QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP
                     TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY
                     IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV
                     PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT
                     KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR
                     RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK
                     VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM
                     EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL
                     PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV
                     LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP
                     QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA
                     SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL
                     LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV
                     VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP
                     NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ
                     MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK
                     VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH
                     MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM
                     ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP
                     VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG
                     SYEAPTQGSASSLVNGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD
                     PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV
                     EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA
                     RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD
                     TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ
                     DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR
                     LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH
                     FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR
                     DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTIEDMLVVWNRVWIEENDHMEDKT
                     PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGEEEKYMDYLST
                     QVRYLGEEGSTPGVL"
ORIGIN      
        1 gacagttcga gtttgaagcg aaagctagca acagtatcaa caggttttat tttggatttg
       61 gaaacgagag tttctggtca tgaaaaaccc aaaaaagaaa tccggaggat tccggattgt
      121 caatatgcta aaacgcggag tagcccgtgt gagccccttt gggggcttga agaggctgcc
      181 agccggactt ctgctgggtc atgggcccat caggatggtc ttggcgattc tagccttttt
      241 gagattcacg gcaatcaagc catcactggg tctcatcaat agatggggtt cagtggggaa
      301 aaaagaggct atggaaataa taaagaagtt caagaaagat ctggctgcca tgctgagaat
      361 aatcaatgct aggaaggaga agaagagacg aggcgcagat actagtgtcg gaattgttgg
      421 cctcctgctg accacagcta tggcagcgga ggtcactaga cgtgggagtg catactacat
      481 gtacttggac agaaacgatg ctggggaggc catatctttc ccaaccacat tggggatgaa
      541 taagtgttat atacagatca tggatcttgg acacatgtgt gatgccacca tgagctatga
      601 atgccctatg ctggatgagg gggtggaacc agatgacgtc gattgttggt gcaacacgac
      661 gtcaacttgg gttgtgtacg gaacctgcca tcacaaaaaa ggtgaagcac ggagatctag
      721 aagagctgtg acgctcccct cccattccac taggaagctg caaacgcggt cgcaaacctg
      781 gttggaatca agagaataca caaagcactt gattagagtc gaaaattgga tattcaggaa
      841 ccctggcttc gcgttagcag cagctgccat cgcttggctt ttgggaagct caacgagcca
      901 aaaagttata tacttggtca tgatactgct gattgccccg gcatacagca tcaggtgcat
      961 aggagtcagc aatagggact ttgtggaagg tatgtcaggt gggacttggg ttgatgttgt
     1021 cttggaacat ggaggctgtg tcaccgtaat ggcacaggac aaaccgactg tcgacataga
     1081 gctggttaca acaacagtca gcaacatggc ggaggtaaga tcctactgct atgaggcatc
     1141 aatatcagac atggcttcgg acagccgctg cccaacacaa ggtgaagcct accttgacaa
     1201 gcaatcagac actcaatatg tctgcaaaag aacgttagtg gacagaggct ggggaaatgg
     1261 atgtggactt tttggcaaag ggagcctggt gacatgcgct aagtttgcat gctccaagaa
     1321 aatgaccggg aagagcatcc agccagagaa tctggagtac cggataatgc tgtcagttca
     1381 tggctcccag cacagtggga tgatcgttaa tgacacagga catgaaactg atgagaatag
     1441 agcgaaggtt gagataacgc ccaattcacc aagagccgaa gccaccctgg ggggttttgg
     1501 aagcctagga ctggattgtg aaccgaggac aggccttgac ttttcagatt tgtattactt
     1561 gactatgaat aacaagcact ggttggttca caaggagtgg ttccacgaca ttccattacc
     1621 ttggcacgct ggggcagaca ccggaactcc acactggaac aacaaagaag cactggtaga
     1681 gttcaaggac gcacatgcca aaaggcaaac tgtcgtggtt ctagggagtc aagaaggagc
     1741 agttcacacg gcccttgctg gagctctgga ggctgagatg gatggtgcaa agggaaggct
     1801 gtcctctggc cacttgaaat gtcgcctgaa aatggataaa cttagattga agggcgtgtc
     1861 atactccttg tgtaccgcag cgttcacatt caccaagatc ccggctgaaa cactgcacgg
     1921 gacagtcaca gtggaggtac agtacgcagg gacagatgga ccttgcaagg ttccagctca
     1981 gatggcggtg gacatgcaaa ctctgacccc agttgggagg ttgataaccg ccaaccccgt
     2041 aatcactgaa agcactgaga actctaagat gatgctggaa cttgatccac catttgggga
     2101 ctcttacatt gtcataggag tcggggagaa gaagatcacc caccactggc acaggagtgg
     2161 cagcaccatt ggaaaagcat ttgaagccac tgtgagaggt gccaagagaa tggcagtctt
     2221 gggagataca gcctgggact ttggatcagt tggaggcgct ctcaactcat tgggcaaggg
     2281 catccatcaa atttttggag cagctttcaa atcattgttt ggaggaatgt cctggttctc
     2341 acaaatcctc attggaacgt tgctgatgtg gttgggtctg aacacaaaga atggatctat
     2401 ttccctcatg tgcttggcct tagggggagt gttgatcttc ttatccacag ccgtctctgc
     2461 tgatgtgggg tgctcggtgg acttctcaaa gaaggagacg agatgcggta caggggtgtt
     2521 cgtctataac gacgttgaag cctggaggga caggtacaag taccatcctg actccccccg
     2581 tagattggca gcagcagtca agcaagcctg ggaagatggt atctgcggga tctcctctgt
     2641 ttcaagaatg gaaaacatca tgtggagatc agtagaaggg gagctcaatg caatcctgga
     2701 agagaatgga gttcaactga cggtcgttgt gggatctgta aaaaacccca tgtggagagg
     2761 tccacagaga ttgcccgtgc ctgtgaacga gctgccccac ggctggaagg cttgggggaa
     2821 atcgtacttc gttagagcag caaagacaaa taacagcttt gtcgtggatg gtgacacact
     2881 gaaggaatgc ccactcaaac atagagcatg gaacagcttt cttgtggagg atcatgggtt
     2941 cggggtattt cacactagtg tctggctcaa ggttagagaa gattattcat tagagtgtga
     3001 tccagccgtt attggaacag ctgttaaggg aaaggaggct gtacacagtg atctaggcta
     3061 ctggattgag agtgagaaga atgacacatg gaggctgaag agggcccatc tgatcgagat
     3121 gaaaacatgt gaatggccaa agtcccacac attgtggaca gatggaatag aagagagtga
     3181 tctgatcata cccaagtctt tagctgggcc actcagccat cacaatacca gagagggcta
     3241 caggacccaa atgaaagggc catggcacag tgaagagctt gaaattcggt ttgaggaatg
     3301 cccaggcact aaggtccacg tggaggaaac atgtggaaca agaggaccat ctctgagatc
     3361 aaccactgca agcggaaggg tgatcgagga atggtgctgc agggagtgca caatgccccc
     3421 actgtcgttc cgggctaaag atggctgttg gtatggaatg gagataaggc ccaggaaaga
     3481 accagaaagc aacttagtaa ggtcagtggt gactgcagga tcaactgatc acatggatca
     3541 cttctccctt ggagtgcttg tgattctgct catggtgcag gaagggctga agaagagaat
     3601 gaccacaaag atcatcataa gcacatcaat ggcagtgctg gtagctatga tcctgggagg
     3661 attttcaatg agtgacctgg ctaagcttgc aattttgatg ggtgccacct tcgcggaaat
     3721 gaacactgga ggagatgtag ctcatctggc gctgatagcg gcattcaaag tcagaccagc
     3781 gttgctggta tctttcatct tcagagctaa ttggacaccc cgtgaaagca tgctgctggc
     3841 cttggcctcg tgtcttttgc aaactgcgat ctccgccttg gaaggcgacc tgatggttct
     3901 catcaatggt tttgctttgg cctggttggc aatacgagcg atggttgttc cacgcactga
     3961 taacatcacc ttggcaatcc tggctgctct gacaccactg gcccggggca cactgcttgt
     4021 ggcgtggaga gcaggccttg ctacttgcgg ggggtttatg ctcctctctc tgaagggaaa
     4081 aggcagtgtg aagaagaact taccatttgt catggccctg ggactaaccg ctgtgaggct
     4141 ggtcgacccc atcaacgtgg tgggactgct gttgctcaca aggagtggga agcggagctg
     4201 gccccctagc gaagtactca cagctgttgg cctgatatgc gcattggctg gagggttcgc
     4261 caaggcagat atagagatgg ctgggcccat ggccgcggtc ggtctgctaa ttgtcagtta
     4321 cgtggtctca ggaaagagtg tggacatgta cattgaaaga gcaggtgaca tcacatggga
     4381 aaaagatgcg gaagtcactg gaaacagtcc ccggctcgat gtggcgctag atgagagtgg
     4441 tgatttctcc ctggtggagg atgacggtcc ccccatgaga gagatcatac tcaaggtggt
     4501 cctgatgacc atctgtggca tgaacccaat agccataccc tttgcagctg gagcgtggta
     4561 cgtatacgtg aagactggaa aaaggagtgg tgctctatgg gatgtgcctg ctcccaagga
     4621 agtaaaaaag ggggagacca cagatggagt gtacagagta atgactcgta gactgctagg
     4681 ttcaacacaa gttggagtgg gagttatgca agagggggtc tttcacacta tgtggcacgt
     4741 cacaaaagga tccgcgctga gaagcggtga agggagactt gatccatact ggggagatgt
     4801 caagcaggat ctggtgtcat actgtggtcc atggaagcta gatgccgcct gggacgggca
     4861 cagcgaggtg cagctcttgg ccgtgccccc cggagagaga gcgaggaaca tccagactct
     4921 gcccggaata tttaagacaa aggatgggga cattggagcg gttgcgctgg attacccagc
     4981 aggaacttca ggatctccaa tcctagacaa gtgtgggaga gtgataggac tttatggcaa
     5041 tggggtcgtg atcaaaaatg ggagttatgt tagtgccatc acccaaggga ggagggagga
     5101 agagactcct gttgagtgct tcgagccttc gatgctgaag aagaagcagc taactgtctt
     5161 agacttgcat cctggagctg ggaaaaccag gagagttctt cctgaaatag tccgtgaagc
     5221 tataaaaaca agactccgta ctgtgatctt agctccaacc agggttgtcg ctgctgaaat
     5281 ggaggaagcc cttagagggc ttccagtgcg ttatatgaca acagcagtca atgtcaccca
     5341 ttctggaaca gaaatcgtcg acttaatgtg ccatgccacc ttcacttcac gtctactaca
     5401 gccaatcaga gtccccaact ataatctgta tattatggat gaggcccact tcacagatcc
     5461 ctcaagtata gcagcaagag gatacatttc aacaagggtt gagatgggcg aggcggctgc
     5521 catcttcatg accgccacgc caccaggaac ccgtgacgca tttccggact ccaactcacc
     5581 aattatggac accgaagtgg aagtcccaga gagagcctgg agctcaggct ttgattgggt
     5641 gacggatcat tctggaaaaa cagtttggtt tgttccaagc gtgaggaacg gcaatgagat
     5701 cgcagcttgt ctgacaaagg ctggaaaacg ggtcatacag ctcagcagaa agacttttga
     5761 gacagagttc cagaaaacaa aacatcaaga gtgggacttt gtcgtgacga ccgacatttc
     5821 agagatgggc gccaacttta aagctgaccg tgtcatagat tccaggagat gcctaaagcc
     5881 ggtcatactt gatggcgaga gagtcattct ggctggaccc atgcctgtca cacatgccag
     5941 cgctgcccag aggagggggc gcataggcag gaatcccaac aaacctggag atgagtatct
     6001 gtatggaggt gggtgcgcag agactgacga agaccatgca cactggcttg aagcaagaat
     6061 gctccttgac aatatttacc tccaagatgg cctcatagcc tcgctctatc gacctgaggc
     6121 cgacaaagta gcagccattg agggagagtt caagcttagg acggagcaaa ggaagacctt
     6181 tgtggaactc atgaaaagag gagatcttcc tgtttggctg gcctatcagg ttgcatctgc
     6241 cggaataact tacacagata gaagatggtg ctttgatggc acgaccaaca acaccataat
     6301 ggaagacagt gtgccggcag aggtgtggac cagacacgga gagaaaagag tgctcaaacc
     6361 gaggtggatg gacgccagag tttgttcaga tcatgcggcc ctgaagtcat tcaaggagtt
     6421 tgccgctggg aaaagaggag cggcttttgg agtgatggaa gccctgggaa cactgccagg
     6481 acacatgaca gagagattcc aggaagccat tgacaacctc gctgtgctca tgcgggcaga
     6541 gactggaagc aggccttaca aagccgcggc ggcccaattg ccggagaccc tagagaccat
     6601 tatgcttttg gggttgctgg gaacagtctc gctgggaatc tttttcgtct tgatgaggaa
     6661 caagggcata gggaagatgg gctttggaat ggtgactctt ggggccagcg catggctcat
     6721 gtggctctcg gaaattgagc cagccagaat tgcatgtgtc ctcattgttg tgttcctatt
     6781 gctggtggtg ctcatacctg agccagaaaa gcaaagatct ccccaggaca accaaatggc
     6841 aatcatcatc atggtagcag taggtcttct aggcttgatc accgccaatg aactcggatg
     6901 gttggagaga acaaagagtg acctaagcca tctaatggga aggagagagg agggagcaac
     6961 cataggattc tcaatggaca ttgacctgcg gccagcctca gcttgggcca tctatgctgc
     7021 cttgacaact ttcattaccc cagccgtcca acatgcagtg accacttcat acaacaacta
     7081 ctccttaatg gcgatggcca cgcaagctgg agtgttgttt ggtatgggca aagggatgcc
     7141 attctacgca tgggactttg gagtcccgct gctaatgata ggttgctact cacaattaac
     7201 acccctgacc ctaatagtgg ccatcatttt gctcgtggcg cactacatgt acttgatccc
     7261 agggctgcag gcagcagctg cgcgtgctgc ccagaagaga acggcagctg gcatcatgaa
     7321 gaaccctgtt gtggatggaa tagtggtgac tgacattgac acaatgacaa ttgaccccca
     7381 agtggagaaa aagatgggac aggtgctact catagcagta gccgtctcca gcgccatact
     7441 gtcgcggacc gcctgggggt ggggggaggc tggggccctg atcacagccg caacttccac
     7501 tttgtgggaa ggctctccga acaagtactg gaactcctct acagccactt cactgtgtaa
     7561 catttttagg ggaagttact tggctggagc ttctctaatc tacacagtaa caagaaacgc
     7621 tggcttggtc aagagacgtg ggggtggaac aggagagacc ctgggagaga aatggaaggc
     7681 ccgcttgaac cagatgtcgg ccctggagtt ctactcctac aaaaagtcag gcatcaccga
     7741 ggtgtgcaga gaagaggccc gccgcgccct caaggacggt gtggcaacgg gaggccatgc
     7801 tgtgtcccga ggaagtgcaa agctgagatg gttggtggag cggggatacc tgcagcccta
     7861 tggaaaggtc attgatcttg gatgtggcag agggggctgg agttactacg ccgccaccat
     7921 ccgcaaagtt caagaagtga aaggatacac aaaaggaggc cctggtcatg aagaacccgt
     7981 gttggtgcaa agctatgggt ggaacatagt ccgtctcaag agtggggtgg acgtctttca
     8041 tatggcggct gagccgtgtg acacgttgct atgtgacata ggtgagtcat catctagtcc
     8101 tgaagtggaa gaagcacgga cgctcagagt cctctccatg gtgggggatt ggcttgaaaa
     8161 aagaccagga gccttttgta taaaagtgtt gtgcccatac accagcacta tgatggaaac
     8221 cctggagcga ctgcagcgta ggtatggggg aggactggtc agagtgccac tctcccgcaa
     8281 ctctacacat gagatgtact gggtctctgg agcgaaaagc aacaccataa aaagtgtgtc
     8341 caccacgagc cagctcctct tggggcgcat ggacgggcct aggaggccag tgaaatatga
     8401 ggaggacgtg aatctcggct ctggcacgcg ggctgtggta agctgcgctg aagctcccaa
     8461 catgaagatc attggtaacc gcattgaaag gatccgcagt gagcacgcgg aaacgtggtt
     8521 ctttgacgag aaccacccat ataggacatg ggcttaccat ggaagctatg aggcccccac
     8581 acaagggtca gcatcctctc tagtaaacgg ggttgtcagg ctcctgtcaa aaccctggga
     8641 tgtggtgact ggagtcacag gaatagccat gaccgacacc acaccgtatg gtcagcaaag
     8701 agttttcaag gaaaaagtgg acactagggt gccagacccc caagaaggca ctcgtcaggt
     8761 tatgagcatg gtctcttcct ggttgtggaa agagctaggc aaacacaaac ggccacgagt
     8821 ctgtaccaaa gaagagttca tcaacaaggt tcgtagcaat gcagcattag gggcaatatt
     8881 tgaagaggaa aaagagtgga agactgcagt ggaagctgtg aacgatccaa ggttctgggc
     8941 tctagtggac aaggaaagag agcaccacct gagaggagag tgccagagtt gtgtgtacaa
     9001 catgatggga aaaagagaaa agaaacaagg ggaatttgga aaggccaagg gcagccgcgc
     9061 catctggtat atgtggctag gggctagatt tctagagttc gaagcccttg gattcttgaa
     9121 cgaggatcac tggatgggga gagagaactc aggaggtggt gttgaagggc tgggattaca
     9181 aagactcgga tatgtcctag aagagatgag tcgcatacca ggaggaagga tgtatgcaga
     9241 tgacactgct ggctgggata cccgcatcag caggtttgat ctagagaatg aagctctaat
     9301 caccaaccaa atggagaaag ggcacagggc cttggcattg gccataatca agtacacata
     9361 ccaaaacaaa gtggtaaagg tccttagacc agctgaaaaa gggaaaacag ttatggacat
     9421 tatttcgaga caagaccaaa gggggagcgg acaagttgtc acttacgctc ttaacacatt
     9481 taccaaccta gtggtgcaac tcattcggaa tatggaggct gaggaagttc tagagatgca
     9541 agacttgtgg ctgctgcgga ggtcagagaa agtgaccaac tggttgcaga gcaacggatg
     9601 ggataggctc aaacgaatgg cagtcagtgg agatgattgc gttgtgaagc caattgatga
     9661 taggtttgca catgccctca ggttcttgaa tgatatggga aaagttagga aggacacaca
     9721 agagtggaaa ccctcaactg gatgggacaa ctgggaagaa gttccgtttt gctcccacca
     9781 cttcaacaag ctccatctca aggacgggag gtccattgtg gttccctgcc gccaccaaga
     9841 tgaactgatt ggtcgggccc gcgtctctcc aggggcggga tggagcatcc gggagactgc
     9901 ttgcctagca aaatcatatg cgcaaatgtg gcagctcctt tatttccaca gaagggacct
     9961 ccgactgatg gccaatgcca tttgttcatc tgtgccagtt gactgggttc caactgggag
    10021 aactacctgg tcaatccatg gaaagggaga atggatgacc attgaagaca tgcttgtggt
    10081 gtggaacaga gtgtggattg aggagaacga ccacatggaa gacaagaccc cagttacgaa
    10141 atggacagac attccctatt tgggaaaaag ggaagacttg tggtgtggat ctctcatagg
    10201 gcacagaccg cgcaccacct gggctgagaa cattaaaaac acagtcaaca tggtgcgcag
    10261 gatcataggt gaggaagaaa agtacatgga ctacctatcc acccaagtcc gctacttggg
    10321 tgaagaaggg tctacacctg gagtgctgta agcaccaatc ttaatgttgt caggcctgct
    10381 agtcagccac agcttgggga aagctgtgca gcctgtgacc cccccaggag aagctgggaa
    10441 accaagccta tagtcaggcc gagaacgcca tggcacggaa gaagccatgc tgcctgtgag
    10501 cccctcagag gacactgagt caaaaaaccc cacgcgcttg gaggcgcagg atgggaaaag
    10561 aaggtggcga ccttccccac ccttcaatct ggggcctgaa ctggagat

[niman]

ZIKV/Aedes_aegypti/USA/2016/FL02M

matches

Sequences producing significant alignments:

Select:AllNone Selected:0

AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments

Sequences producing significant alignments:

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
Select seq gb|KX838905.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM2-7719 polyprotein gene, complete cds	18511	18511	100%	0.0	99%	KX838905.1
Select seq gb|KX842449.1|	Zika virus isolate ZIKV/Human/USA/2016/ZF10.UR-010 polyprotein gene, complete cds	18507	18507	100%	0.0	99%	KX842449.1
Select seq gb|KX832731.1|	Zika virus isolate ZIKV/Human/USA/2016/ZL2.SA-Hu0015 polyprotein gene, complete cds	18498	18498	100%	0.0	99%	KX832731.1
Select seq gb|KX838904.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM1-7501 polyprotein gene, complete cds	18489	18489	100%	0.0	99%	KX838904.1
Select seq gb|KU853013.1|	Zika virus isolate Dominican Republic/2016/PD2, complete genome	18444	18444	100%	0.0	99%	KU853013.1
Select seq gb|KU853012.1|	Zika virus isolate Dominican Republic/2016/PD1, complete genome	18442	18442	100%	0.0	99%	KU853012.1
Select seq gb|KX673530.1|	Zika virus isolate PHE_semen_Guadeloupe, complete genome	18420	18420	100%	0.0	99%	KX673530.1
Select seq gb|KX838906.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM3-7729 polyprotein gene, complete cds	18411	18411	100%	0.0	99%	KX838906.1
Select seq gb|KX447510.1|	Zika virus isolate 1_0049_PF polyprotein gene, complete cds	18354	18354	100%	0.0	99%	KX447510.1
Select seq gb|KX280026.1|	Zika virus isolate Paraiba_01, complete genome	18348	18348	100%	0.0	99%	KX280026.1
Select seq gb|KX447512.1|	Zika virus isolate 1_0181_PF polyprotein gene, complete cds	18345	18345	100%	0.0	99%	KX447512.1
Select seq gb|KX369547.1|	Zika virus strain PF13/251013-18, complete genome	18345	18345	100%	0.0	99%	KX369547.1
Select seq gb|KU509998.3|	Zika virus strain Haiti/1225/2014, complete genome	18345	18345	100%	0.0	99%	KU509998.3
Select seq gb|KJ776791.2|	Zika virus strain H/PF/2013, complete genome	18339	18339	100%	0.0	99%	KJ776791.2
Select seq gb|KX447509.1|	Zika virus isolate 1_0087_PF polyprotein gene, complete cds	18339	18339	100%	0.0	99%	KX447509.1
Select seq gb|KU991811.1|	Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds	18339	18339	100%	0.0	99%	KU991811.1
Select seq gb|KU729217.2|	Zika virus isolate BeH823339 polyprotein gene, complete cds	18339	18339	100%	0.0	99%	KU729217.2
Select seq gb|KX447513.1|	Zika virus isolate 1_0134_PF polyprotein gene, complete cds	18336	18336	100%	0.0	99%	KX447513.1
Select seq gb|KX811222.1|	Zika virus isolate Brazil_2015_MG, complete genome	18330	18330	100%	0.0	99%	KX811222.1
Select seq gb|KX197205.1|	Zika virus isolate 9, complete genome	18330	18330	100%	0.0	99%	KX197205.1
Select seq gb|KX447515.1|	Zika virus isolate 1_0030_PF polyprotein gene, complete cds	18330	18330	100%	0.0	99%	KX447515.1
Select seq gb|KX447511.1|	Zika virus isolate 1_0015_PF polyprotein gene, complete cds	18330	18330	100%	0.0	99%	KX447511.1
Select seq gb|KU321639.1|	Zika virus strain ZikaSPH2015, complete genome	18330	18330	100%	0.0	99%	KU321639.1
Select seq gb|KX879604.1|	Zika virus isolate SN089, complete genome	18327	18327	100%	0.0	99%	KX879604.1
Select seq gb|KX447514.1|	Zika virus isolate 1_0035_PF polyprotein gene, complete cds	18327	18327	100%	0.0	99%	KX447514.1
Select seq gb|KX051563.1|	Zika virus isolate Haiti/1/2016, complete genome	18327	18327	100%	0.0	99%	KX051563.1
Select seq gb|KX447516.1|	Zika virus isolate 1_0111_PF polyprotein gene, complete cds	18321	18321	100%	0.0	99%	KX447516.1
Select seq gb|KU729218.1|	Zika virus isolate BeH828305 polyprotein gene, complete cds	18321	18321	100%	0.0	99%	KU729218.1
Select seq gb|KU707826.1|	Zika virus isolate SSABR1, complete genome	18321	18321	100%	0.0	99%	KU707826.1
Select seq gb|KU527068.1|	Zika virus strain Natal RGN, complete genome	18321	18321	100%	0.0	99%	KU527068.1
Select seq gb|KU365779.1|	Zika virus strain BeH819966 polyprotein gene, complete cds	18321	18321	100%	0.0	99%	KU365779.1
Select seq gb|KX879603.1|	Zika virus isolate SN062, complete genome	18318	18318	100%	0.0	99%	KX879603.1
Select seq gb|KX262887.1|	Zika virus isolate 103451, complete genome	18318	18318	100%	0.0	99%	KX262887.1
Select seq gb|KX197192.1|	Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome	18318	18318	100%	0.0	99%	KX197192.1
Select seq gb|KU926310.1|	Zika virus isolate Rio-S1, complete genome	18318	18318	100%	0.0	99%	KU926310.1
Select seq gb|KU926309.1|	Zika virus isolate Rio-U1, complete genome	18318	18318	100%	0.0	99%	KU926309.1
Select seq gb|KU940228.1|	Zika virus isolate Bahia07, partial genome	18312	18312	100%	0.0	99%	KU940228.1
Select seq gb|KX694534.1|	Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome	18309	18309	100%	0.0	99%	KX694534.1
Select seq gb|KX198135.1|	Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome	18309	18309	100%	0.0	99%	KX198135.1
Select seq gb|KU501217.1|	Zika virus strain 8375 polyprotein gene, complete cds	18309	18309	100%	0.0	99%	KU501217.1
Select seq gb|KU365780.1|	Zika virus strain BeH815744 polyprotein gene, complete cds	18309	18309	100%	0.0	99%	KU365780.1
Select seq gb|KU647676.1|	Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds	18303	18303	100%	0.0	99%	KU647676.1
Select seq gb|KU501216.1|	Zika virus strain 103344 polyprotein gene, complete cds	18303	18303	100%	0.0	99%	KU501216.1
Select seq gb|KU365777.1|	Zika virus strain BeH818995 polyprotein gene, complete cds	18303	18303	100%	0.0	99%	KU365777.1
Select seq gb|KX447517.1|	Zika virus isolate 1_0038_PF polyprotein gene, complete cds	18300	18300	100%	0.0	99%	KX447517.1
Select seq gb|KU758877.1|	Zika virus isolate 17271 polyprotein gene, complete cds	18300	18300	100%	0.0	99%	KU758877.1
Select seq gb|KX247646.1|	Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome	18300	18300	100%	0.0	99%	KX247646.1
Select seq gb|KX156776.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome	18300	18300	100%	0.0	99%	KX156776.1
Select seq gb|KU497555.1|	Zika virus isolate Brazil-ZKV2015, complete genome	18296	18296	99%	0.0	99%	KU497555.1
Select seq gb|KX520666.1|	Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds	18294	18294	100%	0.0	99%	KX520666.1
Select seq gb|KX156774.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome	18294	18294	100%	0.0	99%	KX156774.1
Select seq gb|KU820897.5|	Zika virus isolate FLR polyprotein gene, complete cds	18291	18291	100%	0.0	99%	KU820897.5
Select seq gb|KX247632.1|	Zika virus isolate MEX_I_7 polyprotein gene, complete cds	18291	18291	100%	0.0	99%	KX247632.1
Select seq gb|KX156775.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome	18291	18291	100%	0.0	99%	KX156775.1
Select seq gb|KX087102.1|	Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome	18291	18291	100%	0.0	99%	KX087102.1
Select seq gb|KU365778.1|	Zika virus strain BeH819015 polyprotein gene, complete cds	18291	18291	100%	0.0	99%	KU365778.1
Select seq gb|KU312312.1|	Zika virus isolate Z1106033 polyprotein gene, complete cds	18291	18291	100%	0.0	99%	KU312312.1
Select seq gb|KU922960.1|	Zika virus isolate MEX/InDRE/Sm/2016, complete genome	18285	18285	100%	0.0	99%	KU922960.1
Select seq gb|KX856011.1|	Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome	18282	18282	100%	0.0	99%	KX856011.1
Select seq gb|KX806557.1|	Zika virus isolate TS17-2016, complete genome	18282	18282	100%	0.0	99%	KX806557.1
Select seq gb|KX548902.1|	Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds	18282	18282	100%	0.0	99%	KX548902.1
Select seq gb|KX446951.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome	18282	18282	100%	0.0	99%	KX446951.1
Select seq gb|KU937936.1|	Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds	18282	18282	100%	0.0	99%	KU937936.1
Select seq gb|KU922923.1|	Zika virus isolate MEX/InDRE/Lm/2016, complete genome	18282	18282	100%	0.0	99%	KU922923.1
Select seq gb|KU501215.1|	Zika virus strain PRVABC59, complete genome	18282	18282	100%	0.0	99%	KU501215.1
Select seq gb|KX601168.1|	Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome	18276	18276	100%	0.0	99%	KX601168.1
Select seq gb|KX446950.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome	18276	18276	100%	0.0	99%	KX446950.1
Select seq gb|KX087101.2|	Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome	18276	18276	100%	0.0	99%	KX087101.2
Select seq gb|KU870645.1|	Zika virus isolate FB-GWUH-2016, complete genome	18276	18276	100%	0.0	99%	KU870645.1
Select seq gb|KX702400.1|	Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome	18273	18273	100%	0.0	99%	KX702400.1
Select seq gb|KX377337.1|	Zika virus strain PRVABC-59, complete genome	18273	18273	100%	0.0	99%	KX377337.1
Select seq gb|KX766029.1|	Zika virus isolate R116265, complete genome	18264	18264	100%	0.0	99%	KX766029.1
Select seq gb|KU820898.1|	Zika virus isolate GZ01 polyprotein gene, complete cds	18264	18264	100%	0.0	99%	KU820898.1
Select seq gb|KX056898.1|	Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds	18258	18258	100%	0.0	99%	KX056898.1
Select seq gb|KU955590.1|	Zika virus isolate Z16019 polyprotein gene, complete cds	18258	18258	100%	0.0	99%	KU955590.1
Select seq gb|KX766028.1|	Zika virus isolate R114916, complete genome	18256	18256	100%	0.0	99%	KX766028.1
Select seq gb|KU740184.2|	Zika virus isolate GD01 polyprotein gene, complete cds	18254	18254	100%	0.0	99%	KU740184.2
Select seq gb|KU761564.1|	Zika virus isolate GDZ16001 polyprotein gene, complete cds	18254	18254	100%	0.0	99%	KU761564.1
Select seq gb|KX117076.1|	Zika virus isolate Zhejiang04, complete genome	18249	18249	100%	0.0	99%	KX117076.1
Select seq gb|KX185891.1|	Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds	18240	18240	100%	0.0	99%	KX185891.1
Select seq gb|KU963796.1|	Zika virus isolate SZ-WIV01 polyprotein gene, complete cds	18240	18240	100%	0.0	99%	KU963796.1
Select seq gb|KX253996.1|	Zika virus isolate ZKC2/2016, complete genome	18236	18236	100%	0.0	99%	KX253996.1
Select seq gb|KU955589.1|	Zika virus isolate Z16006 polyprotein gene, complete cds	18236	18236	100%	0.0	99%	KU955589.1
Select seq gb|KU820899.2|	Zika virus isolate ZJ03, complete genome	18236	18236	100%	0.0	99%	KU820899.2
Select seq gb|KX266255.1|	Zika virus isolate ZIKV_SMGC-1, complete genome	18233	18233	100%	0.0	99%	KX266255.1
Select seq gb|KU866423.2|	Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds	18231	18231	100%	0.0	99%	KU866423.2
Select seq gb|KU940224.1|	Zika virus isolate Bahia09, partial genome	18218	18218	99%	0.0	99%	KU940224.1
Select seq gb|KU744693.1|	Zika virus isolate VE_Ganxian, complete genome	18096	18096	100%	0.0	99%	KU744693.1
Select seq gb|KX827309.1|	Zika virus isolate ZKA-16-291 polyprotein gene, complete cds	18074	18074	100%	0.0	99%	KX827309.1
Select seq gb|KX813683.1|	Zika virus isolate ZKA-16-097 polyprotein gene, complete cds	18060	18060	100%	0.0	99%	KX813683.1
Select seq gb|KU681081.3|	Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome	18006	18006	100%	0.0	99%	KU681081.3
Select seq gb|KX694532.1|	Zika virus strain ZIKV/Homo sapiens/THA/PLCal_ZV/2013, complete genome	17885	17885	100%	0.0	99%	KX694532.1
Select seq gb|KU955593.1|	Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome	17699	17699	100%	0.0	98%	KU955593.1
Select seq gb|JN860885.1|	Zika virus isolate FSS13025 polyprotein gene, partial cds	17699	17699	99%	0.0	98%	JN860885.1
Select seq gb|KF993678.1|	Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds	17652	17652	98%	0.0	99%	KF993678.1
Select seq gb|EU545988.1|	Zika virus polyprotein gene, complete cds	17544	17544	100%	0.0	98%	EU545988.1
Select seq gb|KU681082.3|	Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome	17398	17398	100%	0.0	98%	KU681082.3
Select seq gb|KX601167.1|	Zika virus strain ZIKV/Aedes sp./MYS/P6-740/1966, complete genome	16370	16370	100%	0.0	95%	KX601167.1
Select seq gb|KX694533.1|	Zika virus strain ZIKV/Aedes aegypti/MYS/P6-740/1966, complete genome	16361	16361	100%	0.0	95%	KX694533.1
Select seq gb|HQ234499.1|	Zika virus isolate P6-740 polyprotein gene, partial cds	16361	16361	99%	0.0	95%	HQ234499.1

[niman]

LOCUS       KX838906               10617 bp    RNA     linear   VRL 03-OCT-2016
DEFINITION  Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein
            gene, complete cds.
ACCESSION   KX838906
VERSION     KX838906.2  GI:1072829979
DBLINK      BioProject: PRJNA342539
            BioSample: SAMN05761898
KEYWORDS    .
SOURCE      Zika virus
  ORGANISM  Zika virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Flaviviridae; Flavivirus.
REFERENCE   1  (bases 1 to 10617)
  AUTHORS   Grubaugh,N., Paul,L., Porcelli,M., Vasquez,C., Gangavarupu,K.,
            Oliveira,G., Robles-Sikisaka,R., Michael,S., Isern,S. and
            Andersen,K.
  TITLE     Zika virus sequences from Florida, USA, 2016
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 10617)
  AUTHORS   Grubaugh,N., Paul,L., Porcelli,M., Vasquez,C., Gangavarupu,K.,
            Oliveira,G., Robles-Sikisaka,R., Michael,S., Isern,S. and
            Andersen,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-SEP-2016) Department of Immunology and Microbial
            Science, The Scripps Research Institute, 10550 North Torrey Pines
            Road, IMM-210, La Jolla, CA 92037, USA
REFERENCE   3  (bases 1 to 10617)
  AUTHORS   Grubaugh,N., Paul,L., Porcelli,M., Vasquez,C., Gangavarupu,K.,
            Oliveira,G., Robles-Sikisaka,R., Michael,S., Isern,S. and
            Andersen,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-OCT-2016) Department of Immunology and Microbial
            Science, The Scripps Research Institute, 10550 North Torrey Pines
            Road, IMM-210, La Jolla, CA 92037, USA
  REMARK    Sequence update by submitter
COMMENT     On Oct 3, 2016 this sequence version replaced gi:1063797025.
            
            ##Assembly-Data-START##
            Assembly Method       :: NovoAlign v. V3.04
            Coverage              :: 160,000
            Sequencing Technology :: Illumina
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..10617
                     /organism="Zika virus"
                     /mol_type="genomic RNA"
                     /isolate="ZIKV/Aedes_aegypti/USA/2016/FL03M"
                     /isolation_source="pool of 15 adult mosquitoes"
                     /host="Aedes aegypti"
                     /db_xref="taxon:64320"
                     /country="USA: Miami, Florida"
                     /collection_date="23-Aug-2016"
     CDS             89..10360
                     /codon_start=1
                     /product="polyprotein"
                     /protein_id="AOO53984.1"
                     /db_xref="GI:1063797026"
                     /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI
                     RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK
                     RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI
                     MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT
                     LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV
                     IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE
                     LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG
                     NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET
                     DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF
                     HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE
                     MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG
                     TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG
                     EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG
                     AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC
                     SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR
                     MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK
                     SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE
                     CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI
                     EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR
                     GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSVVTA
                     GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA
                     ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT
                     AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL
                     ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRNGKRSWPPSE
                     VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD
                     AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY
                     VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW
                     HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN
                     IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT
                     QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP
                     TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY
                     IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV
                     PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT
                     KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR
                     RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK
                     VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM
                     EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL
                     PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV
                     LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP
                     QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA
                     SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL
                     LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV
                     VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP
                     NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ
                     MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK
                     VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH
                     MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM
                     ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP
                     VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG
                     SYEAPTQGSASSLVNGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD
                     PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV
                     EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA
                     RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD
                     TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ
                     DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR
                     LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH
                     FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR
                     DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTIEDMLVVWNRVWIEENDHMEDKT
                     PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGEEEKYMDYLST
                     QVRYLGEEGSTPGVL"
ORIGIN      
        1 tcagactgcg acagttcgag tttgaagcga aagctagcaa cagtatcaac aggttttatt
       61 ttggatttgg aaacgagagt ttctggtcat gaaaaaccca aaaaagaaat ccggaggatt
      121 ccggattgtc aatatgctaa aacgcggagt agcccgtgtg agcccctttg ggggcttgaa
      181 gaggctgcca gccggacttc tgctgggtca tgggcccatc aggatggtct tggcgattct
      241 agcctttttg agattcacgg caatcaagcc atcactgggt ctcatcaata gatggggttc
      301 agtggggaaa aaagaggcta tggaaataat aaagaagttc aagaaagatc tggctgccat
      361 gctgagaata atcaatgcta ggaaggagaa gaagagacga ggcgcagata ctagtgtcgg
      421 aattgttggc ctcctgctga ccacagctat ggcagcggag gtcactagac gtgggagtgc
      481 atactacatg tacttggaca gaaacgatgc tggggaggcc atatcttttc caaccacatt
      541 ggggatgaat aagtgttata tacagatcat ggatcttgga cacatgtgtg atgccaccat
      601 gagctatgaa tgccctatgc tggatgaggg ggtggaacca gatgacgtcg attgttggtg
      661 caacacgacg tcaacttggg ttgtgtacgg aacctgccat cacaaaaaag gtgaagcacg
      721 gagatctaga agagctgtga cgctcccctc ccattccact aggaagctgc aaacgcggtc
      781 gcaaacctgg ttggaatcaa gagaatacac aaagcacttg attagagtcg aaaattggat
      841 attcaggaac cctggcttcg cgttagcagc agctgccatc gcttggcttt tgggaagctc
      901 aacgagccaa aaagtcatat acttggtcat gatactgctg attgccccgg catacagcat
      961 caggtgcata ggagtcagca atagggactt tgtggaaggt atgtcaggtg ggacttgggt
     1021 tgatgttgtc ttggaacatg gaggttgtgt caccgtaatg gcacaggaca aaccgactgt
     1081 cgacatagag ctggttacaa caacagtcag caacatggcg gaggtaagat cctactgcta
     1141 tgaggcatca atatcagaca tggcttcgga cagccgctgc ccaacacaag gtgaagccta
     1201 ccttgacaag caatcagaca ctcaatatgt ctgcaaaaga acgttagtgg acagaggctg
     1261 gggaaatgga tgtggacttt ttggcaaagg gagcctggtg acatgcgcta agtttgcatg
     1321 ctccaagaaa atgaccggga agagcatcca gccagagaat ctggagtacc ggataatgct
     1381 gtcagttcat ggctcccagc acagtgggat gatcgttaat gacacaggac atgaaactga
     1441 tgagaataga gcgaaggttg agataacgcc caattcacca agagccgaag ccaccctggg
     1501 gggttttgga agcctaggac ttgattgtga accgaggaca ggccttgact tctcagattt
     1561 gtattacttg actatgaata acaagcactg gttggttcac aaggagtggt tccacgacat
     1621 tccattacct tggcacgctg gggcagacac cggaactcca cactggaaca acaaagaagc
     1681 actggtagag ttcaaggacg cacatgccaa aaggcaaact gtcgtggttc tagggagtca
     1741 agaaggagca gttcacacgg cccttgctgg agctctggag gctgagatgg atggtgcaaa
     1801 gggaaggctg tcctctggcc acttgaaatg tcgcctgaaa atggataaac ttagattgaa
     1861 gggcgtgtca tactccttgt gtaccgcagc gttcacattc accaagatcc cggctgaaac
     1921 actgcacggg acagtcacag tggaggtaca gtacgcaggg acagatggac cttgcaaggt
     1981 tccagctcag atggcggtgg acatgcaaac tctgacccca gttgggaggt tgataaccgc
     2041 caaccccgta atcactgaaa gcactgagaa ctctaagatg atgctggaac ttgatccacc
     2101 atttggggac tcttacattg tcataggagt cggggagaag aagatcaccc accactggca
     2161 caggagtggc agcaccattg gaaaagcatt tgaagccact gtgagaggtg ccaagagaat
     2221 ggcagtcttg ggagacacag cctgggactt tggatcagtt ggaggcgctc tcaactcatt
     2281 gggcaagggc atccatcaaa tttttggagc agctttcaaa tcattgtttg gaggaatgtc
     2341 ctggttctca caaatcctca ttggaacgtt gctgatgtgg ttgggtctga acacaaagaa
     2401 tggatctatt tccctcatgt gcttggcctt agggggagtg ctgatcttct tatccacagc
     2461 cgtctctgct gatgtggggt gctcggtgga cttctcaaag aaggagacga gatgcggtac
     2521 aggggtgttc gtctataacg acgttgaagc ctggagggac aggtacaagt accatcctga
     2581 ctccccccgt agattggcag cagcagtcaa gcaagcctgg gaagatggta tctgcgggat
     2641 ctcctctgtt tcaagaatgg aaaacatcat gtggagatca gtagaagggg agctcaatgc
     2701 aatcctggaa gagaatggag ttcaactgac ggtcgttgtg ggatctgtaa aaaaccccat
     2761 gtggagaggt ccacagagat tgcccgtgcc tgtgaacgag ctgccccacg gctggaaggc
     2821 ttgggggaaa tcgtacttcg ttagagcagc aaagacaaat aacagctttg tcgtggatgg
     2881 tgacacactg aaggaatgcc cactcaaaca tagagcatgg aacagctttc ttgtggagga
     2941 tcatgggttc ggggtattcc acactagtgt ctggctcaag gttagagaag attattcatt
     3001 agagtgtgat ccagccgtta ttggaacagc tgttaaggga aaggaggctg tacacagtga
     3061 tctaggctac tggattgaga gtgagaagaa tgacacatgg aggctgaaga gggcccatct
     3121 gatcgagatg aaaacatgtg aatggccaaa gtcccacaca ttgtggacag atggaataga
     3181 agagagtgat ctgatcatac ccaagtcttt agctgggcca ctcagccatc acaataccag
     3241 agagggctac aggacccaaa tgaaagggcc atggcacagt gaagagcttg aaattcggtt
     3301 tgaggaatgc ccaggcacta aggtccacgt ggaggaaaca tgtggaacaa gaggaccatc
     3361 tctgagatca accactgcaa gcggaagggt gatcgaggaa tggtgctgca gggagtgcac
     3421 aatgccccca ctgtcgttcc gggctaaaga tggctgttgg tatggaatgg agataaggcc
     3481 caggaaagaa ccagaaagca acttagtaag gtcagtggtg actgcaggat caactgatca
     3541 catggatcac ttctcccttg gagtgcttgt gattctgctc atggtgcagg aagggctgaa
     3601 gaagagaatg accacaaaga tcatcataag cacatcaatg gcagtgctgg tagctatgat
     3661 cctgggagga ttttcaatga gtgacctggc taagcttgca attttgatgg gtgccacctt
     3721 cgcggaaatg aacactggag gagatgtagc tcatctggcg ctgatagcgg cattcaaagt
     3781 cagaccagcg ttgctggtat ctttcatctt cagagctaat tggacacccc gtgaaagcat
     3841 gctgctggcc ttggcctcgt gtcttttgca aactgcgatc tccgccttgg aaggcgacct
     3901 gatggttctc atcaatggtt ttgctttggc ctggttggca atacgagcga tggttgttcc
     3961 acgcactgat aacatcacct tggcaatcct ggctgctctg acaccactgg cccggggcac
     4021 actgcttgtg gcgtggagag caggccttgc tacttgcggg gggtttatgc tcctctctct
     4081 gaagggaaaa ggcagtgtga agaagaactt accatttgtc atggccctgg gactaaccgc
     4141 tgtgagactg gtcgacccca tcaacgtggt gggactgctg ttgctcacaa ggaatgggaa
     4201 gcggagctgg ccccctagcg aagtactcac agctgttggc ctgatatgcg cattggctgg
     4261 agggttcgcc aaggcagata tagagatggc tgggcccatg gccgcggtcg gtctgctaat
     4321 tgtcagttac gtggtctcag gaaagagtgt ggacatgtac attgaaagag caggtgacat
     4381 cacatgggaa aaagatgcgg aagtcactgg aaacagtccc cggctcgatg tggcgctaga
     4441 tgagagtggt gatttctccc tggtggagga tgacggtccc cccatgagag agatcatact
     4501 caaggtggtc ctgatgacca tctgtggcat gaacccaata gccataccct ttgcagctgg
     4561 agcgtggtac gtatacgtga agactggaaa aaggagtggt gctctatggg atgtgcctgc
     4621 tcccaaggaa gtaaaaaagg gggagaccac agatggagtg tacagagtaa tgactcgtag
     4681 actgctaggt tcaacacaag ttggagtggg agttatgcaa gagggggtct ttcacactat
     4741 gtggcacgtc acaaaaggat ccgcgctgag aagcggtgaa gggagacttg atccatactg
     4801 gggagatgtc aagcaggatc tggtgtcata ctgtggtcca tggaagctag atgccgcctg
     4861 ggacgggcac agcgaggtgc agctcttggc cgtgcccccc ggagagagag cgaggaacat
     4921 ccagactctg cccggaatat ttaagacaaa ggatggggac attggagcgg ttgcgctgga
     4981 ttacccagca ggaacttcag gatctccaat cctagacaag tgtgggagag tgataggact
     5041 ttatggcaat ggggtcgtga tcaaaaatgg gagttatgtt agtgccatca cccaagggag
     5101 gagggaggaa gagactcctg ttgagtgctt cgagccttcg atgctgaaga agaagcagct
     5161 aactgtctta gacttgcacc ctggagctgg gaaaaccagg agagttcttc ctgaaatagt
     5221 ccgtgaagct ataaaaacaa gactccgtac tgtgatctta gctccaacca gggttgtcgc
     5281 tgctgaaatg gaggaagccc ttagagggct tccagtgcgt tatatgacaa cagcagtcaa
     5341 tgtcacccat tctggaacag aaatcgtcga cttaatgtgc catgccacct tcacttcacg
     5401 tctactacag ccaatcagag tccccaacta taatctgtat attatggatg aggcccactt
     5461 cacagatccc tcaagtatag cagcaagagg atacatttca acaagggttg agatgggcga
     5521 ggcggctgcc atcttcatga ccgccacgcc accaggaacc cgtgacgcat ttccggactc
     5581 caactcacca attatggaca ccgaagtgga agtcccagag agagcctgga gctcaggctt
     5641 tgattgggtg acggatcatt ctggaaaaac agtttggttt gttccaagcg tgaggaacgg
     5701 caatgagatc gcagcttgtc tgacaaaggc tggaaaacgg gtcatacagc tcagcagaaa
     5761 gacttttgag acagagttcc agaaaacaaa acatcaagag tgggactttg tcgtgacaac
     5821 cgacatttca gagatgggcg ccaactttaa agctgaccgt gtcatagatt ccaggagatg
     5881 cctaaagccg gtcatacttg atggcgagag agtcattctg gctggaccca tgcctgtcac
     5941 acatgccagc gctgcccaga ggagggggcg cataggcagg aatcccaaca aacctggaga
     6001 tgagtatctg tatggaggtg ggtgcgcaga gactgacgaa gaccatgcac actggcttga
     6061 agcaagaatg ctccttgaca atatttacct ccaagatggc ctcatagcct cgctctatcg
     6121 acctgaggcc gacaaagtag cagccattga gggagagttc aagcttagga cggagcaaag
     6181 gaagaccttt gtggaactca tgaaaagagg agatcttcct gtttggctgg cctatcaggt
     6241 tgcatctgcc ggaataactt acacagatag aagatggtgc tttgatggca cgaccaacaa
     6301 caccataatg gaagacagtg tgccggcaga ggtgtggacc agacacggag agaaaagagt
     6361 gctcaaaccg aggtggatgg acgccagagt ttgttcagat catgcggccc tgaagtcatt
     6421 caaggagttt gccgctggga aaagaggagc ggcttttgga gtgatggaag ccctgggaac
     6481 actgccagga cacatgacag agagattcca ggaagccatt gacaacctcg ctgtgctcat
     6541 gcgggcagag actggaagca ggccttacaa agccgcggcg gcccaattgc cggagaccct
     6601 agagaccatt atgcttttgg ggttgctggg aacagtctcg ctgggaatct ttttcgtctt
     6661 gatgaggaac aagggcatag ggaagatggg ctttggaatg gtgactcttg gggccagcgc
     6721 atggctcatg tggctctcgg aaattgagcc agccagaatt gcatgtgtcc tcattgttgt
     6781 gttcctattg ctggtggtgc tcatacctga gccagaaaag caaagatctc cccaggacaa
     6841 ccaaatggca atcatcatca tggtagcagt aggtcttctg ggcttgatca ccgccaatga
     6901 actcggatgg ttggagagaa caaagagtga cctaagccat ctaatgggaa ggagagagga
     6961 gggagcaacc ataggattct caatggacat tgacctgcgg ccagcctcag cttgggccat
     7021 ctatgctgcc ttgacaactt tcattacccc agccgtccaa catgcagtga ccacttcata
     7081 caacaactac tccttaatgg cgatggccac gcaagctgga gtgttgtttg gtatgggcaa
     7141 agggatgcca ttctacgcat gggactttgg agtcccgctg ctaatgatag gttgctactc
     7201 acaattaaca cccctgaccc taatagtggc catcattttg ctcgtggcgc actacatgta
     7261 cttgatccca gggctgcagg cagcagctgc gcgtgctgcc cagaagagaa cggcagctgg
     7321 catcatgaag aaccctgttg tggatggaat agtggtgact gacattgaca caatgacaat
     7381 tgacccccaa gtggagaaaa agatgggaca ggtgctactc atagcagtag ccgtctccag
     7441 cgccatactg tcgcggaccg cctgggggtg gggggaggct ggggccctga tcacagccgc
     7501 aacttccact ttgtgggaag gctctccgaa caagtactgg aactcctcta cagccacttc
     7561 actgtgtaac atttttaggg ggagttactt ggctggagct tctctaatct acacagtaac
     7621 aagaaacgct ggcttggtca agagacgtgg gggtggaaca ggagagaccc tgggagagaa
     7681 atggaaggcc cgcttgaacc agatgtcggc cctggagttc tactcctaca aaaagtcagg
     7741 catcaccgag gtgtgcagag aagaggcccg ccgcgccctc aaggacggtg tggcaacggg
     7801 aggccatgct gtgtcccgag gaagtgcaaa gctgagatgg ttggtggagc ggggatacct
     7861 gcagccctat ggaaaggtca ttgatcttgg atgtggcaga gggggctgga gttactacgc
     7921 cgccaccatc cgcaaagttc aagaagtgaa aggatacaca aaaggaggcc ctggtcatga
     7981 agaacctgtg ttggtgcaaa gctatgggtg gaacatagtc cgtctcaaga gtggggtgga
     8041 cgtctttcat atggcggctg agccgtgtga cacgttgctg tgtgacatag gtgagtcatc
     8101 atctagtcct gaagtggaag aagcacggac gctcagagtc ctctccatgg tgggggattg
     8161 gcttgaaaaa agaccaggag ccttttgtat aaaagtgttg tgcccataca ccagcactat
     8221 gatggaaacc ttggagcggc tgcagcgtag gtatggggga ggactggtca gagtgccact
     8281 ctcccgcaac tctacacatg agatgtactg ggtctctgga gcgaaaagca acaccataaa
     8341 aagtgtgtcc accacgagcc agctcctctt ggggcgcatg gacgggccta ggaggccagt
     8401 gaaatatgag gaggatgtga atctcggctc tggcacgcgg gctgtggtaa gctgcgctga
     8461 agctcccaac atgaagatca ttggtaaccg cattgaaagg atccgcagtg agcacgcgga
     8521 aacgtggttc tttgacgaga accacccata taggacatgg gcttaccatg gaagctatga
     8581 ggcccctaca caagggtcag catcctctct agtaaacggg gttgtcaggc tcctgtcaaa
     8641 accctgggat gtggtgactg gagtcacagg aatagccatg accgacacca caccgtatgg
     8701 tcagcaaaga gttttcaagg aaaaagtgga cactagggtg ccagaccccc aagaaggcac
     8761 tcgtcaggtt atgagcatgg tctcttcctg gttgtggaaa gagctaggca aacacaaacg
     8821 gccacgagtc tgcaccaaag aagagttcat caacaaggtt cgtagcaatg cagcattagg
     8881 ggcaatattt gaagaggaaa aagagtggaa gactgcagtg gaagctgtga acgatccaag
     8941 gttctgggct ctagtggaca aggaaagaga gcaccacctg agaggagagt gccagagttg
     9001 tgtgtacaac atgatgggaa aaagagaaaa gaaacaaggg gaatttggaa aggccaaggg
     9061 cagccgcgcc atctggtata tgtggctagg ggctagattt ctagagttcg aagcccttgg
     9121 attcttgaac gaggatcact ggatggggag agagaactca ggaggtggtg ttgaagggct
     9181 gggattacaa agactcggat atgtcctaga agagatgagt cgcataccag gaggaaggat
     9241 gtatgcagat gacactgctg gctgggatac ccgcatcagc aggtttgatc tagagaatga
     9301 agctctaatc accaaccaaa tggagaaagg gcacagggcc ttggcattgg ccataatcaa
     9361 gtacacatac caaaataaag tggtaaaggt ccttagacca gctgaaaaag ggaaaacagt
     9421 tatggacatt atttcgagac aagaccaaag ggggagcgga caagttgtca cttacgctct
     9481 taacacattt accaacctag tggtgcaact cattcggaat atggaggctg aggaagttct
     9541 agagatgcaa gacttgtggc tgctgcggag gtcagagaaa gtgaccaact ggttgcagag
     9601 caacggatgg gataggctca aacgaatggc agtcagtgga gatgattgcg ttgtgaagcc
     9661 aattgatgat aggtttgcac atgccctcag gttcttgaat gatatgggaa aagttaggaa
     9721 ggacacacaa gagtggaaac cctcaactgg atgggacaac tgggaagaag ttccgttttg
     9781 ctcccaccac ttcaacaagc tccatctcaa ggacgggagg tccattgtgg ttccctgccg
     9841 ccaccaagat gaactgattg gccgggcccg cgtctctcca ggggcgggat ggagcatccg
     9901 ggagactgct tgcctagcaa aatcatatgc gcaaatgtgg cagctccttt atttccacag
     9961 aagggacctc cgactgatgg ccaatgccat ttgttcatct gtgccagttg actgggttcc
    10021 aactgggaga actacctggt caatccatgg aaagggagaa tggatgacca ttgaagacat
    10081 gcttgtggtg tggaacagag tgtggattga ggagaacgac cacatggaag acaagacccc
    10141 agttacgaaa tggacagaca ttccctattt gggaaaaagg gaagacttgt ggtgtggatc
    10201 tctcataggg cacagaccgc gcaccacctg ggctgagaac attaaaaaca cagtcaacat
    10261 ggtgcgcagg atcataggtg aggaagaaaa gtacatggac tacctatcca cccaagttcg
    10321 ctacttgggt gaagaagggt ctacacctgg agtgctgtaa gcaccaatct taatgttgtc
    10381 aggcctgcta gtcagccaca gcttggggaa agctgtgcag cctgtgaccc ccccaggaga
    10441 agctgggaaa ccaagcctat agtcaggccg agaacgccat ggcacggaag aagccatgct
    10501 gcctgtgagc ccctcagagg acactgagtc aaaaaacccc acgcgcttgg aggcgcagga
    10561 tgggaaaaga aggtggcgac cttccccacc cttcaatctg gggcctgaac tggagat

[niman]

ZIKV/Aedes_aegypti/USA/2016/FL03M

matches

Sequences producing significant alignments:

Select:AllNone Selected:0

AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments

Sequences producing significant alignments:

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
Select seq gb|KX838906.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM3-7729 polyprotein gene, complete cds	18520	18520	100%	0.0	99%	KX838906.1
Select seq gb|KX673530.1|	Zika virus isolate PHE_semen_Guadeloupe, complete genome	18438	18438	100%	0.0	99%	KX673530.1
Select seq gb|KU853013.1|	Zika virus isolate Dominican Republic/2016/PD2, complete genome	18435	18435	100%	0.0	99%	KU853013.1
Select seq gb|KU853012.1|	Zika virus isolate Dominican Republic/2016/PD1, complete genome	18433	18433	100%	0.0	99%	KU853012.1
Select seq gb|KX842449.1|	Zika virus isolate ZIKV/Human/USA/2016/ZF10.UR-010 polyprotein gene, complete cds	18426	18426	100%	0.0	99%	KX842449.1
Select seq gb|KX838905.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM2-7719 polyprotein gene, complete cds	18420	18420	100%	0.0	99%	KX838905.1
Select seq gb|KX838904.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM1-7501 polyprotein gene, complete cds	18417	18417	100%	0.0	99%	KX838904.1
Select seq gb|KX832731.1|	Zika virus isolate ZIKV/Human/USA/2016/ZL2.SA-Hu0015 polyprotein gene, complete cds	18417	18417	100%	0.0	99%	KX832731.1
Select seq gb|KX447510.1|	Zika virus isolate 1_0049_PF polyprotein gene, complete cds	18345	18345	100%	0.0	99%	KX447510.1
Select seq gb|KX280026.1|	Zika virus isolate Paraiba_01, complete genome	18339	18339	100%	0.0	99%	KX280026.1
Select seq gb|KU729217.2|	Zika virus isolate BeH823339 polyprotein gene, complete cds	18339	18339	100%	0.0	99%	KU729217.2
Select seq gb|KX447512.1|	Zika virus isolate 1_0181_PF polyprotein gene, complete cds	18336	18336	100%	0.0	99%	KX447512.1
Select seq gb|KX369547.1|	Zika virus strain PF13/251013-18, complete genome	18336	18336	100%	0.0	99%	KX369547.1
Select seq gb|KU509998.3|	Zika virus strain Haiti/1225/2014, complete genome	18336	18336	100%	0.0	99%	KU509998.3
Select seq gb|KJ776791.2|	Zika virus strain H/PF/2013, complete genome	18330	18330	100%	0.0	99%	KJ776791.2
Select seq gb|KX447509.1|	Zika virus isolate 1_0087_PF polyprotein gene, complete cds	18330	18330	100%	0.0	99%	KX447509.1
Select seq gb|KU991811.1|	Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds	18330	18330	100%	0.0	99%	KU991811.1
Select seq gb|KX447513.1|	Zika virus isolate 1_0134_PF polyprotein gene, complete cds	18327	18327	100%	0.0	99%	KX447513.1
Select seq gb|KX811222.1|	Zika virus isolate Brazil_2015_MG, complete genome	18321	18321	100%	0.0	99%	KX811222.1
Select seq gb|KX197205.1|	Zika virus isolate 9, complete genome	18321	18321	100%	0.0	99%	KX197205.1
Select seq gb|KX447515.1|	Zika virus isolate 1_0030_PF polyprotein gene, complete cds	18321	18321	100%	0.0	99%	KX447515.1
Select seq gb|KX447511.1|	Zika virus isolate 1_0015_PF polyprotein gene, complete cds	18321	18321	100%	0.0	99%	KX447511.1
Select seq gb|KU321639.1|	Zika virus strain ZikaSPH2015, complete genome	18321	18321	100%	0.0	99%	KU321639.1
Select seq gb|KX879604.1|	Zika virus isolate SN089, complete genome	18318	18318	100%	0.0	99%	KX879604.1
Select seq gb|KX447514.1|	Zika virus isolate 1_0035_PF polyprotein gene, complete cds	18318	18318	100%	0.0	99%	KX447514.1
Select seq gb|KX051563.1|	Zika virus isolate Haiti/1/2016, complete genome	18318	18318	100%	0.0	99%	KX051563.1
Select seq gb|KX447516.1|	Zika virus isolate 1_0111_PF polyprotein gene, complete cds	18312	18312	100%	0.0	99%	KX447516.1
Select seq gb|KU729218.1|	Zika virus isolate BeH828305 polyprotein gene, complete cds	18312	18312	100%	0.0	99%	KU729218.1
Select seq gb|KU707826.1|	Zika virus isolate SSABR1, complete genome	18312	18312	100%	0.0	99%	KU707826.1
Select seq gb|KU527068.1|	Zika virus strain Natal RGN, complete genome	18312	18312	100%	0.0	99%	KU527068.1
Select seq gb|KU365779.1|	Zika virus strain BeH819966 polyprotein gene, complete cds	18312	18312	100%	0.0	99%	KU365779.1
Select seq gb|KX879603.1|	Zika virus isolate SN062, complete genome	18309	18309	100%	0.0	99%	KX879603.1
Select seq gb|KX262887.1|	Zika virus isolate 103451, complete genome	18309	18309	100%	0.0	99%	KX262887.1
Select seq gb|KX197192.1|	Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome	18309	18309	100%	0.0	99%	KX197192.1
Select seq gb|KU926310.1|	Zika virus isolate Rio-S1, complete genome	18309	18309	100%	0.0	99%	KU926310.1
Select seq gb|KU926309.1|	Zika virus isolate Rio-U1, complete genome	18309	18309	100%	0.0	99%	KU926309.1
Select seq gb|KU940228.1|	Zika virus isolate Bahia07, partial genome	18303	18303	100%	0.0	99%	KU940228.1
Select seq gb|KX694534.1|	Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome	18300	18300	100%	0.0	99%	KX694534.1
Select seq gb|KX198135.1|	Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome	18300	18300	100%	0.0	99%	KX198135.1
Select seq gb|KU501217.1|	Zika virus strain 8375 polyprotein gene, complete cds	18300	18300	100%	0.0	99%	KU501217.1
Select seq gb|KU365780.1|	Zika virus strain BeH815744 polyprotein gene, complete cds	18300	18300	100%	0.0	99%	KU365780.1
Select seq gb|KU647676.1|	Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds	18294	18294	100%	0.0	99%	KU647676.1
Select seq gb|KU501216.1|	Zika virus strain 103344 polyprotein gene, complete cds	18294	18294	100%	0.0	99%	KU501216.1
Select seq gb|KU365777.1|	Zika virus strain BeH818995 polyprotein gene, complete cds	18294	18294	100%	0.0	99%	KU365777.1
Select seq gb|KX447517.1|	Zika virus isolate 1_0038_PF polyprotein gene, complete cds	18291	18291	100%	0.0	99%	KX447517.1
Select seq gb|KU758877.1|	Zika virus isolate 17271 polyprotein gene, complete cds	18291	18291	100%	0.0	99%	KU758877.1
Select seq gb|KX247646.1|	Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome	18291	18291	100%	0.0	99%	KX247646.1
Select seq gb|KX247632.1|	Zika virus isolate MEX_I_7 polyprotein gene, complete cds	18291	18291	100%	0.0	99%	KX247632.1
Select seq gb|KX156776.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome	18291	18291	100%	0.0	99%	KX156776.1
Select seq gb|KU497555.1|	Zika virus isolate Brazil-ZKV2015, complete genome	18287	18287	99%	0.0	99%	KU497555.1
Select seq gb|KX520666.1|	Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds	18285	18285	100%	0.0	99%	KX520666.1
Select seq gb|KX156774.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome	18285	18285	100%	0.0	99%	KX156774.1
Select seq gb|KX856011.1|	Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome	18282	18282	100%	0.0	99%	KX856011.1
Select seq gb|KU820897.5|	Zika virus isolate FLR polyprotein gene, complete cds	18282	18282	100%	0.0	99%	KU820897.5
Select seq gb|KX446951.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome	18282	18282	100%	0.0	99%	KX446951.1
Select seq gb|KX156775.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome	18282	18282	100%	0.0	99%	KX156775.1
Select seq gb|KX087102.1|	Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome	18282	18282	100%	0.0	99%	KX087102.1
Select seq gb|KU501215.1|	Zika virus strain PRVABC59, complete genome	18282	18282	100%	0.0	99%	KU501215.1
Select seq gb|KU365778.1|	Zika virus strain BeH819015 polyprotein gene, complete cds	18282	18282	100%	0.0	99%	KU365778.1
Select seq gb|KU312312.1|	Zika virus isolate Z1106033 polyprotein gene, complete cds	18282	18282	100%	0.0	99%	KU312312.1
Select seq gb|KX601168.1|	Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome	18276	18276	100%	0.0	99%	KX601168.1
Select seq gb|KX446950.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome	18276	18276	100%	0.0	99%	KX446950.1
Select seq gb|KX087101.2|	Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome	18276	18276	100%	0.0	99%	KX087101.2
Select seq gb|KU922960.1|	Zika virus isolate MEX/InDRE/Sm/2016, complete genome	18276	18276	100%	0.0	99%	KU922960.1
Select seq gb|KX806557.1|	Zika virus isolate TS17-2016, complete genome	18273	18273	100%	0.0	99%	KX806557.1
Select seq gb|KX548902.1|	Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds	18273	18273	100%	0.0	99%	KX548902.1
Select seq gb|KX377337.1|	Zika virus strain PRVABC-59, complete genome	18273	18273	100%	0.0	99%	KX377337.1
Select seq gb|KU937936.1|	Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds	18273	18273	100%	0.0	99%	KU937936.1
Select seq gb|KU922923.1|	Zika virus isolate MEX/InDRE/Lm/2016, complete genome	18273	18273	100%	0.0	99%	KU922923.1
Select seq gb|KU870645.1|	Zika virus isolate FB-GWUH-2016, complete genome	18267	18267	100%	0.0	99%	KU870645.1
Select seq gb|KX766029.1|	Zika virus isolate R116265, complete genome	18264	18264	100%	0.0	99%	KX766029.1
Select seq gb|KX702400.1|	Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome	18264	18264	100%	0.0	99%	KX702400.1
Select seq gb|KU820898.1|	Zika virus isolate GZ01 polyprotein gene, complete cds	18254	18254	100%	0.0	99%	KU820898.1
Select seq gb|KX056898.1|	Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds	18249	18249	100%	0.0	99%	KX056898.1
Select seq gb|KU955590.1|	Zika virus isolate Z16019 polyprotein gene, complete cds	18249	18249	100%	0.0	99%	KU955590.1
Select seq gb|KX766028.1|	Zika virus isolate R114916, complete genome	18247	18247	100%	0.0	99%	KX766028.1
Select seq gb|KU740184.2|	Zika virus isolate GD01 polyprotein gene, complete cds	18245	18245	100%	0.0	99%	KU740184.2
Select seq gb|KU761564.1|	Zika virus isolate GDZ16001 polyprotein gene, complete cds	18245	18245	100%	0.0	99%	KU761564.1
Select seq gb|KX117076.1|	Zika virus isolate Zhejiang04, complete genome	18240	18240	100%	0.0	99%	KX117076.1
Select seq gb|KX185891.1|	Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds	18231	18231	100%	0.0	99%	KX185891.1
Select seq gb|KU963796.1|	Zika virus isolate SZ-WIV01 polyprotein gene, complete cds	18231	18231	100%	0.0	99%	KU963796.1
Select seq gb|KX253996.1|	Zika virus isolate ZKC2/2016, complete genome	18227	18227	100%	0.0	99%	KX253996.1
Select seq gb|KU955589.1|	Zika virus isolate Z16006 polyprotein gene, complete cds	18227	18227	100%	0.0	99%	KU955589.1
Select seq gb|KU820899.2|	Zika virus isolate ZJ03, complete genome	18227	18227	100%	0.0	99%	KU820899.2
Select seq gb|KX266255.1|	Zika virus isolate ZIKV_SMGC-1, complete genome	18224	18224	100%	0.0	99%	KX266255.1
Select seq gb|KU866423.2|	Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds	18222	18222	100%	0.0	99%	KU866423.2
Select seq gb|KU940224.1|	Zika virus isolate Bahia09, partial genome	18209	18209	99%	0.0	99%	KU940224.1
Select seq gb|KU744693.1|	Zika virus isolate VE_Ganxian, complete genome	18087	18087	100%	0.0	99%	KU744693.1
Select seq gb|KX827309.1|	Zika virus isolate ZKA-16-291 polyprotein gene, complete cds	18065	18065	100%	0.0	99%	KX827309.1
Select seq gb|KX813683.1|	Zika virus isolate ZKA-16-097 polyprotein gene, complete cds	18051	18051	100%	0.0	99%	KX813683.1
Select seq gb|KU681081.3|	Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome	18006	18006	100%	0.0	99%	KU681081.3
Select seq gb|KX694532.1|	Zika virus strain ZIKV/Homo sapiens/THA/PLCal_ZV/2013, complete genome	17885	17885	100%	0.0	99%	KX694532.1
Select seq gb|KU955593.1|	Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome	17690	17690	100%	0.0	98%	KU955593.1
Select seq gb|JN860885.1|	Zika virus isolate FSS13025 polyprotein gene, partial cds	17690	17690	99%	0.0	98%	JN860885.1
Select seq gb|KF993678.1|	Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds	17652	17652	98%	0.0	99%	KF993678.1
Select seq gb|EU545988.1|	Zika virus polyprotein gene, complete cds	17544	17544	100%	0.0	98%	EU545988.1
Select seq gb|KU681082.3|	Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome	17398	17398	100%	0.0	98%	KU681082.3
Select seq gb|KX601167.1|	Zika virus strain ZIKV/Aedes sp./MYS/P6-740/1966, complete genome	16379	16379	100%	0.0	95%	KX601167.1
Select seq gb|KX694533.1|	Zika virus strain ZIKV/Aedes aegypti/MYS/P6-740/1966, complete genome	16370	16370	100%	0.0	95%	KX694533.1
Select seq gb|HQ234499.1|	Zika virus isolate P6-740 polyprotein gene, partial cds	16370	16370	99%	0.0	95%	HQ234499.1

[niman]

1.

Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds

10,365 bp linear RNA

Accession:

 

KX922703.1

 

GI:

 

1071930510

GenBankFASTAGraphics

Select item 10719305122.

Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds

10,609 bp linear RNA

Accession:

 

KX922704.1

 

GI:

 

1071930512

GenBankFASTAGraphics

Select item 10719305143.

Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds

10,609 bp linear RNA

Accession:

 

KX922705.1

 

GI:

 

1071930514

GenBankFASTAGraphics

Select item 10719305164.

Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds

10,610 bp linear RNA

Accession:

 

KX922706.1

 

GI:

 

1071930516

GenBankFASTAGraphics

Select item 10719305185.

Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds

10,609 bp linear RNA

Accession:

 

KX922707.1

 

GI:

 

1071930518

GenBankFASTAGraphics

Select item 10719305206.

Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds

10,606 bp linear RNA

Accession:

 

KX922708.1

 

GI:

 

1071930520

GenBankFASTAGraphics