niman Posted December 24, 2015 Report Posted December 24, 2015 APHIS has released a large series of wild bird clade 2.3.4.4 H5N1, H5N2, and H5N8 sequences dating back to December 2014,
niman Posted December 24, 2015 Author Report Posted December 24, 2015 KU201877 Avian 1 H5N8 USA 2014/12/16 2287 Influenza A virus (A/American American wigeon/Washington/195198/2014(H5N8)) c KU201878 Avian 2 H5N8 USA 2014/12/16 2290 Influenza A virus (A/American American wigeon/Washington/195198/2014(H5N8)) c KU201879 Avian 3 H5N8 USA 2014/12/16 2182 Influenza A virus (A/American American wigeon/Washington/195198/2014(H5N8)) c KU201880 Avian 4 H5N8 USA 2014/12/16 1744 Influenza A virus (A/American American wigeon/Washington/195198/2014(H5N8)) c KU201881 Avian 5 H5N8 USA 2014/12/16 1524 Influenza A virus (A/American American wigeon/Washington/195198/2014(H5N8)) c KU201882 Avian 6 H5N8 USA 2014/12/16 1427 Influenza A virus (A/American American wigeon/Washington/195198/2014(H5N8)) c KU201883 Avian 7 H5N8 USA 2014/12/16 987 Influenza A virus (A/American American wigeon/Washington/195198/2014(H5N8)) c KU201884 Avian 8 H5N8 USA 2014/12/16 850 Influenza A virus (A/American American wigeon/Washington/195198/2014(H5N8)) c KU201725 Avian 1 H5N2 USA 2015/01/18 2287 Influenza A virus (A/American green-winged teal/Idaho/AH0011899/2015(H5N2)) c KU201726 Avian 2 H5N2 USA 2015/01/18 2274 Influenza A virus (A/American green-winged teal/Idaho/AH0011899/2015(H5N2)) c KU201727 Avian 3 H5N2 USA 2015/01/18 2151 Influenza A virus (A/American green-winged teal/Idaho/AH0011899/2015(H5N2)) c KU201728 Avian 4 H5N2 USA 2015/01/18 1744 Influenza A virus (A/American green-winged teal/Idaho/AH0011899/2015(H5N2)) c KU201729 Avian 5 H5N2 USA 2015/01/18 1497 Influenza A virus (A/American green-winged teal/Idaho/AH0011899/2015(H5N2)) c KU201730 Avian 6 H5N2 USA 2015/01/18 1426 Influenza A virus (A/American green-winged teal/Idaho/AH0011899/2015(H5N2)) c KU201731 Avian 7 H5N2 USA 2015/01/18 987 Influenza A virus (A/American green-winged teal/Idaho/AH0011899/2015(H5N2)) c KU201732 Avian 8 H5N2 USA 2015/01/18 838 Influenza A virus (A/American green-winged teal/Idaho/AH0011899/2015(H5N2)) c KU201733 Avian 1 H5N2 USA 2015/01/14 2280 Influenza A virus (A/American green-winged teal/Oregon/AH0012403/2015(H5N2)) c KU201734 Avian 2 H5N2 USA 2015/01/14 2274 Influenza A virus (A/American green-winged teal/Oregon/AH0012403/2015(H5N2)) c KU201735 Avian 3 H5N2 USA 2015/01/14 2151 Influenza A virus (A/American green-winged teal/Oregon/AH0012403/2015(H5N2)) c KU201736 Avian 4 H5N2 USA 2015/01/14 1704 Influenza A virus (A/American green-winged teal/Oregon/AH0012403/2015(H5N2)) c KU201737 Avian 5 H5N2 USA 2015/01/14 1497 Influenza A virus (A/American green-winged teal/Oregon/AH0012403/2015(H5N2)) c KU201738 Avian 6 H5N2 USA 2015/01/14 1410 Influenza A virus (A/American green-winged teal/Oregon/AH0012403/2015(H5N2)) c KU201739 Avian 7 H5N2 USA 2015/01/14 982 Influenza A virus (A/American green-winged teal/Oregon/AH0012403/2015(H5N2)) c KU201740 Avian 8 H5N2 USA 2015/01/14 838 Influenza A virus (A/American green-winged teal/Oregon/AH0012403/2015(H5N2)) c KU201749 Avian 1 H5N8 USA 2015/01/18 2280 Influenza A virus (A/American wigeon/Oregon/AH0012525/2015(H5N8)) c KU201750 Avian 2 H5N8 USA 2015/01/18 2274 Influenza A virus (A/American wigeon/Oregon/AH0012525/2015(H5N8)) c KU201751 Avian 3 H5N8 USA 2015/01/18 2151 Influenza A virus (A/American wigeon/Oregon/AH0012525/2015(H5N8)) c KU201752 Avian 4 H5N8 USA 2015/01/18 1704 Influenza A virus (A/American wigeon/Oregon/AH0012525/2015(H5N8)) c KU201753 Avian 5 H5N8 USA 2015/01/18 1497 Influenza A virus (A/American wigeon/Oregon/AH0012525/2015(H5N8)) c KU201754 Avian 6 H5N8 USA 2015/01/18 1413 Influenza A virus (A/American wigeon/Oregon/AH0012525/2015(H5N8)) c KU201755 Avian 7 H5N8 USA 2015/01/18 982 Influenza A virus (A/American wigeon/Oregon/AH0012525/2015(H5N8)) c KU201756 Avian 8 H5N8 USA 2015/01/18 838 Influenza A virus (A/American wigeon/Oregon/AH0012525/2015(H5N8)) c KU201613 Avian 1 H5N8 USA 2015/01/02 2287 Influenza A virus (A/American wigeon/Utah/AH0007824/2015(H5N8)) c KU201614 Avian 2 H5N8 USA 2015/01/02 2290 Influenza A virus (A/American wigeon/Utah/AH0007824/2015(H5N8)) c KU201615 Avian 3 H5N8 USA 2015/01/02 2182 Influenza A virus (A/American wigeon/Utah/AH0007824/2015(H5N8)) c KU201616 Avian 4 H5N8 USA 2015/01/02 1744 Influenza A virus (A/American wigeon/Utah/AH0007824/2015(H5N8)) c KU201617 Avian 5 H5N8 USA 2015/01/02 1524 Influenza A virus (A/American wigeon/Utah/AH0007824/2015(H5N8)) c KU201618 Avian 6 H5N8 USA 2015/01/02 1427 Influenza A virus (A/American wigeon/Utah/AH0007824/2015(H5N8)) c KU201619 Avian 7 H5N8 USA 2015/01/02 987 Influenza A virus (A/American wigeon/Utah/AH0007824/2015(H5N8)) c KU201620 Avian 8 H5N8 USA 2015/01/02 850 Influenza A virus (A/American wigeon/Utah/AH0007824/2015(H5N8)) c KU201885 Avian 1 H5N8 USA 2014/12/16 2287 Influenza A virus (A/American wigeon/Washington/195205/2014(H5N8)) c KU201886 Avian 2 H5N8 USA 2014/12/16 2290 Influenza A virus (A/American wigeon/Washington/195205/2014(H5N8)) c KU201887 Avian 3 H5N8 USA 2014/12/16 2182 Influenza A virus (A/American wigeon/Washington/195205/2014(H5N8)) c KU201888 Avian 4 H5N8 USA 2014/12/16 1744 Influenza A virus (A/American wigeon/Washington/195205/2014(H5N8)) c KU201889 Avian 5 H5N8 USA 2014/12/16 1524 Influenza A virus (A/American wigeon/Washington/195205/2014(H5N8)) c KU201890 Avian 6 H5N8 USA 2014/12/16 1427 Influenza A virus (A/American wigeon/Washington/195205/2014(H5N8)) c KU201891 Avian 7 H5N8 USA 2014/12/16 987 Influenza A virus (A/American wigeon/Washington/195205/2014(H5N8)) c KU201892 Avian 8 H5N8 USA 2014/12/16 850 Influenza A virus (A/American wigeon/Washington/195205/2014(H5N8)) c KU201821 Avian 1 H5N8 USA 2014/12/30 2287 Influenza A virus (A/American wigeon/Washington/195968/2014(H5N8)) c KU201822 Avian 2 H5N8 USA 2014/12/30 2290 Influenza A virus (A/American wigeon/Washington/195968/2014(H5N8)) c KU201823 Avian 3 H5N8 USA 2014/12/30 2182 Influenza A virus (A/American wigeon/Washington/195968/2014(H5N8)) c KU201824 Avian 4 H5N8 USA 2014/12/30 1744 Influenza A virus (A/American wigeon/Washington/195968/2014(H5N8)) c KU201825 Avian 5 H5N8 USA 2014/12/30 1524 Influenza A virus (A/American wigeon/Washington/195968/2014(H5N8)) c KU201826 Avian 6 H5N8 USA 2014/12/30 1427 Influenza A virus (A/American wigeon/Washington/195968/2014(H5N8)) c KU201827 Avian 7 H5N8 USA 2014/12/30 987 Influenza A virus (A/American wigeon/Washington/195968/2014(H5N8)) c KU201828 Avian 8 H5N8 USA 2014/12/30 850 Influenza A virus (A/American wigeon/Washington/195968/2014(H5N8)) c KU201853 Avian 1 H5N1 USA 2015/01/02 2287 Influenza A virus (A/American wigeon/Washington/196336/2015(H5N1)) c KU201854 Avian 2 H5N1 USA 2015/01/02 2290 Influenza A virus (A/American wigeon/Washington/196336/2015(H5N1)) c KU201855 Avian 3 H5N1 USA 2015/01/02 2182 Influenza A virus (A/American wigeon/Washington/196336/2015(H5N1)) c KU201856 Avian 4 H5N1 USA 2015/01/02 1744 Influenza A virus (A/American wigeon/Washington/196336/2015(H5N1)) c KU201857 Avian 5 H5N1 USA 2015/01/02 1524 Influenza A virus (A/American wigeon/Washington/196336/2015(H5N1)) c KU201858 Avian 6 H5N1 USA 2015/01/02 1417 Influenza A virus (A/American wigeon/Washington/196336/2015(H5N1)) c KU201859 Avian 7 H5N1 USA 2015/01/02 987 Influenza A virus (A/American wigeon/Washington/196336/2015(H5N1)) c KU201860 Avian 8 H5N1 USA 2015/01/02 850 Influenza A virus (A/American wigeon/Washington/196336/2015(H5N1)) c KU201861 Avian 1 H5N1 USA 2015/01/02 2287 Influenza A virus (A/American wigeon/Washington/196340/2015(H5N1)) c KU201862 Avian 2 H5N1 USA 2015/01/02 2290 Influenza A virus (A/American wigeon/Washington/196340/2015(H5N1)) c KU201863 Avian 3 H5N1 USA 2015/01/02 2182 Influenza A virus (A/American wigeon/Washington/196340/2015(H5N1)) c KU201864 Avian 4 H5N1 USA 2015/01/02 1744 Influenza A virus (A/American wigeon/Washington/196340/2015(H5N1)) c KU201865 Avian 5 H5N1 USA 2015/01/02 1524 Influenza A virus (A/American wigeon/Washington/196340/2015(H5N1)) c KU201866 Avian 6 H5N1 USA 2015/01/02 1413 Influenza A virus (A/American wigeon/Washington/196340/2015(H5N1)) c KU201867 Avian 7 H5N1 USA 2015/01/02 987 Influenza A virus (A/American wigeon/Washington/196340/2015(H5N1)) c KU201868 Avian 8 H5N1 USA 2015/01/02 850 Influenza A virus (A/American wigeon/Washington/196340/2015(H5N1)) c KU201941 Avian 1 H5N2 USA 2015/03/13 2287 Influenza A virus (A/Canada goose/Kansas/197850/2015(H5N2)) c KU201942 Avian 2 H5N2 USA 2015/03/13 2290 Influenza A virus (A/Canada goose/Kansas/197850/2015(H5N2)) c KU201943 Avian 4 H5N2 USA 2015/03/13 1744 Influenza A virus (A/Canada goose/Kansas/197850/2015(H5N2)) c KU201944 Avian 5 H5N2 USA 2015/03/13 1524 Influenza A virus (A/Canada goose/Kansas/197850/2015(H5N2)) c KU201945 Avian 6 H5N2 USA 2015/03/13 1426 Influenza A virus (A/Canada goose/Kansas/197850/2015(H5N2)) c KU201946 Avian 7 H5N2 USA 2015/03/13 987 Influenza A virus (A/Canada goose/Kansas/197850/2015(H5N2)) c KU201947 Avian 8 H5N2 USA 2015/03/13 850 Influenza A virus (A/Canada goose/Kansas/197850/2015(H5N2)) c KU201741 Avian 1 H5N8 USA 2015/01/18 2280 Influenza A virus (A/Canada goose/Oregon/AH0012452/2015(H5N8)) c KU201742 Avian 2 H5N8 USA 2015/01/18 2274 Influenza A virus (A/Canada goose/Oregon/AH0012452/2015(H5N8)) c KU201743 Avian 3 H5N8 USA 2015/01/18 2151 Influenza A virus (A/Canada goose/Oregon/AH0012452/2015(H5N8)) c KU201744 Avian 4 H5N8 USA 2015/01/18 1704 Influenza A virus (A/Canada goose/Oregon/AH0012452/2015(H5N8)) c KU201745 Avian 5 H5N8 USA 2015/01/18 1497 Influenza A virus (A/Canada goose/Oregon/AH0012452/2015(H5N8)) c KU201746 Avian 6 H5N8 USA 2015/01/18 1413 Influenza A virus (A/Canada goose/Oregon/AH0012452/2015(H5N8)) c KU201747 Avian 7 H5N8 USA 2015/01/18 982 Influenza A virus (A/Canada goose/Oregon/AH0012452/2015(H5N8)) c KU201748 Avian 8 H5N8 USA 2015/01/18 838 Influenza A virus (A/Canada goose/Oregon/AH0012452/2015(H5N8)) c KU201917 Avian 1 H5N2 USA 2014/12/30 2287 Influenza A virus (A/Canada goose/Washington/197619/2014(H5N2)) c KU201918 Avian 2 H5N2 USA 2014/12/30 2290 Influenza A virus (A/Canada goose/Washington/197619/2014(H5N2)) c KU201919 Avian 3 H5N2 USA 2014/12/30 2182 Influenza A virus (A/Canada goose/Washington/197619/2014(H5N2)) c KU201920 Avian 4 H5N2 USA 2014/12/30 1744 Influenza A virus (A/Canada goose/Washington/197619/2014(H5N2)) c KU201921 Avian 5 H5N2 USA 2014/12/30 1524 Influenza A virus (A/Canada goose/Washington/197619/2014(H5N2)) c KU201922 Avian 6 H5N2 USA 2014/12/30 1426 Influenza A virus (A/Canada goose/Washington/197619/2014(H5N2)) c KU201923 Avian 7 H5N2 USA 2014/12/30 987 Influenza A virus (A/Canada goose/Washington/197619/2014(H5N2)) c KU201924 Avian 8 H5N2 USA 2014/12/30 850 Influenza A virus (A/Canada goose/Washington/197619/2014(H5N2)) c KU201925 Avian 1 H5N2 USA 2015/04/14 2287 Influenza A virus (A/Cooper's hawk/Minnesota/198225/2015(H5N2)) c KU201926 Avian 2 H5N2 USA 2015/04/14 2290 Influenza A virus (A/Cooper's hawk/Minnesota/198225/2015(H5N2)) c KU201927 Avian 3 H5N2 USA 2015/04/14 2182 Influenza A virus (A/Cooper's hawk/Minnesota/198225/2015(H5N2)) c KU201928 Avian 4 H5N2 USA 2015/04/14 1744 Influenza A virus (A/Cooper's hawk/Minnesota/198225/2015(H5N2)) c KU201929 Avian 5 H5N2 USA 2015/04/14 1524 Influenza A virus (A/Cooper's hawk/Minnesota/198225/2015(H5N2)) c KU201930 Avian 6 H5N2 USA 2015/04/14 1426 Influenza A virus (A/Cooper's hawk/Minnesota/198225/2015(H5N2)) c KU201931 Avian 7 H5N2 USA 2015/04/14 987 Influenza A virus (A/Cooper's hawk/Minnesota/198225/2015(H5N2)) c KU201932 Avian 8 H5N2 USA 2015/04/14 850 Influenza A virus (A/Cooper's hawk/Minnesota/198225/2015(H5N2)) cKU201701 Avian 1 H5N2 USA 2015/01/12 2287 Influenza A virus (A/Northern pintail/Oregon/AH0003871/2015(H5N2)) c KU201702 Avian 2 H5N2 USA 2015/01/12 2290 Influenza A virus (A/Northern pintail/Oregon/AH0003871/2015(H5N2)) c KU201703 Avian 3 H5N2 USA 2015/01/12 2182 Influenza A virus (A/Northern pintail/Oregon/AH0003871/2015(H5N2)) c KU201704 Avian 4 H5N2 USA 2015/01/12 1744 Influenza A virus (A/Northern pintail/Oregon/AH0003871/2015(H5N2)) c KU201705 Avian 5 H5N2 USA 2015/01/12 1524 Influenza A virus (A/Northern pintail/Oregon/AH0003871/2015(H5N2)) c KU201706 Avian 6 H5N2 USA 2015/01/12 1426 Influenza A virus (A/Northern pintail/Oregon/AH0003871/2015(H5N2)) c KU201707 Avian 7 H5N2 USA 2015/01/12 987 Influenza A virus (A/Northern pintail/Oregon/AH0003871/2015(H5N2)) c KU201708 Avian 8 H5N2 USA 2015/01/12 850 Influenza A virus (A/Northern pintail/Oregon/AH0003871/2015(H5N2)) c KU201629 Avian 1 H5N2 USA 2015/01/05 2287 Influenza A virus (A/Northern pintail/Oregon/AH0003967/2015(H5N2)) c KU201630 Avian 2 H5N2 USA 2015/01/05 2290 Influenza A virus (A/Northern pintail/Oregon/AH0003967/2015(H5N2)) c KU201631 Avian 3 H5N2 USA 2015/01/05 2182 Influenza A virus (A/Northern pintail/Oregon/AH0003967/2015(H5N2)) c KU201632 Avian 4 H5N2 USA 2015/01/05 1744 Influenza A virus (A/Northern pintail/Oregon/AH0003967/2015(H5N2)) c KU201633 Avian 5 H5N2 USA 2015/01/05 1524 Influenza A virus (A/Northern pintail/Oregon/AH0003967/2015(H5N2)) c KU201634 Avian 6 H5N2 USA 2015/01/05 1426 Influenza A virus (A/Northern pintail/Oregon/AH0003967/2015(H5N2)) c KU201635 Avian 7 H5N2 USA 2015/01/05 987 Influenza A virus (A/Northern pintail/Oregon/AH0003967/2015(H5N2)) c KU201636 Avian 8 H5N2 USA 2015/01/05 850 Influenza A virus (A/Northern pintail/Oregon/AH0003967/2015(H5N2)) c KU201805 Avian 1 H5N2 USA 2014/12/23 2287 Influenza A virus (A/Northern pintail/Washington/195365/2014(H5N2)) c KU201806 Avian 2 H5N2 USA 2014/12/23 2290 Influenza A virus (A/Northern pintail/Washington/195365/2014(H5N2)) c KU201807 Avian 3 H5N2 USA 2014/12/23 2182 Influenza A virus (A/Northern pintail/Washington/195365/2014(H5N2)) c KU201808 Avian 4 H5N2 USA 2014/12/23 1744 Influenza A virus (A/Northern pintail/Washington/195365/2014(H5N2)) c KU201809 Avian 5 H5N2 USA 2014/12/23 1524 Influenza A virus (A/Northern pintail/Washington/195365/2014(H5N2)) c KU201810 Avian 6 H5N2 USA 2014/12/23 1426 Influenza A virus (A/Northern pintail/Washington/195365/2014(H5N2)) c KU201811 Avian 7 H5N2 USA 2014/12/23 987 Influenza A virus (A/Northern pintail/Washington/195365/2014(H5N2)) c KU201812 Avian 8 H5N2 USA 2014/12/23 850 Influenza A virus (A/Northern pintail/Washington/195365/2014(H5N2)) c KU201837 Avian 1 H5N8 USA 2014/12/29 2280 Influenza A virus (A/Northern pintail/Washington/196271/2014(H5N8)) c KU201838 Avian 2 H5N8 USA 2014/12/29 2277 Influenza A virus (A/Northern pintail/Washington/196271/2014(H5N8)) c KU201839 Avian 3 H5N8 USA 2014/12/29 2151 Influenza A virus (A/Northern pintail/Washington/196271/2014(H5N8)) c KU201840 Avian 4 H5N8 USA 2014/12/29 1704 Influenza A virus (A/Northern pintail/Washington/196271/2014(H5N8)) c KU201841 Avian 5 H5N8 USA 2014/12/29 1497 Influenza A virus (A/Northern pintail/Washington/196271/2014(H5N8)) c KU201842 Avian 6 H5N8 USA 2014/12/29 1413 Influenza A virus (A/Northern pintail/Washington/196271/2014(H5N8)) c KU201843 Avian 7 H5N8 USA 2014/12/29 982 Influenza A virus (A/Northern pintail/Washington/196271/2014(H5N8)) c KU201844 Avian 8 H5N8 USA 2014/12/29 838 Influenza A virus (A/Northern pintail/Washington/196271/2014(H5N8)) c KU201661 Avian 1 H5N2 USA 2015/01/03 2287 Influenza A virus (A/Northern shoveler/Oregon/AH0007332/2015(H5N2)) c KU201662 Avian 2 H5N2 USA 2015/01/03 2290 Influenza A virus (A/Northern shoveler/Oregon/AH0007332/2015(H5N2)) c KU201663 Avian 3 H5N2 USA 2015/01/03 2182 Influenza A virus (A/Northern shoveler/Oregon/AH0007332/2015(H5N2)) c KU201664 Avian 4 H5N2 USA 2015/01/03 1744 Influenza A virus (A/Northern shoveler/Oregon/AH0007332/2015(H5N2)) c KU201665 Avian 5 H5N2 USA 2015/01/03 1524 Influenza A virus (A/Northern shoveler/Oregon/AH0007332/2015(H5N2)) c KU201666 Avian 6 H5N2 USA 2015/01/03 1426 Influenza A virus (A/Northern shoveler/Oregon/AH0007332/2015(H5N2)) c KU201667 Avian 7 H5N2 USA 2015/01/03 987 Influenza A virus (A/Northern shoveler/Oregon/AH0007332/2015(H5N2)) c KU201668 Avian 8 H5N2 USA 2015/01/03 850 Influenza A virus (A/Northern shoveler/Oregon/AH0007332/2015(H5N2)) c KU201669 Avian 1 H5N2 USA 2015/01/03 2287 Influenza A virus (A/Northern shoveler/Oregon/AH0007337/2015(H5N2)) c KU201670 Avian 2 H5N2 USA 2015/01/03 2290 Influenza A virus (A/Northern shoveler/Oregon/AH0007337/2015(H5N2)) c KU201671 Avian 3 H5N2 USA 2015/01/03 2182 Influenza A virus (A/Northern shoveler/Oregon/AH0007337/2015(H5N2)) c KU201672 Avian 4 H5N2 USA 2015/01/03 1744 Influenza A virus (A/Northern shoveler/Oregon/AH0007337/2015(H5N2)) c KU201673 Avian 5 H5N2 USA 2015/01/03 1524 Influenza A virus (A/Northern shoveler/Oregon/AH0007337/2015(H5N2)) c KU201674 Avian 6 H5N2 USA 2015/01/03 1426 Influenza A virus (A/Northern shoveler/Oregon/AH0007337/2015(H5N2)) c KU201675 Avian 7 H5N2 USA 2015/01/03 987 Influenza A virus (A/Northern shoveler/Oregon/AH0007337/2015(H5N2)) c KU201676 Avian 8 H5N2 USA 2015/01/03 850 Influenza A virus (A/Northern shoveler/Oregon/AH0007337/2015(H5N2)) c KU201677 Avian 1 H5N2 USA 2015/01/03 2287 Influenza A virus (A/Northern shoveler/Oregon/AH0007339/2015(H5N2)) c KU201678 Avian 2 H5N2 USA 2015/01/03 2290 Influenza A virus (A/Northern shoveler/Oregon/AH0007339/2015(H5N2)) c KU201679 Avian 3 H5N2 USA 2015/01/03 2182 Influenza A virus (A/Northern shoveler/Oregon/AH0007339/2015(H5N2)) c KU201680 Avian 4 H5N2 USA 2015/01/03 1744 Influenza A virus (A/Northern shoveler/Oregon/AH0007339/2015(H5N2)) c KU201681 Avian 5 H5N2 USA 2015/01/03 1524 Influenza A virus (A/Northern shoveler/Oregon/AH0007339/2015(H5N2)) c KU201682 Avian 6 H5N2 USA 2015/01/03 1426 Influenza A virus (A/Northern shoveler/Oregon/AH0007339/2015(H5N2)) c KU201683 Avian 7 H5N2 USA 2015/01/03 987 Influenza A virus (A/Northern shoveler/Oregon/AH0007339/2015(H5N2)) c KU201684 Avian 8 H5N2 USA 2015/01/03 850 Influenza A virus (A/Northern shoveler/Oregon/AH0007339/2015(H5N2)) cKU201797 Avian 1 H5N8 USA 2015/01/20 2287 Influenza A virus (A/bald eagle/Idaho/15-002892-2/2015(H5N8)) c KU201798 Avian 2 H5N8 USA 2015/01/20 2290 Influenza A virus (A/bald eagle/Idaho/15-002892-2/2015(H5N8)) c KU201799 Avian 3 H5N8 USA 2015/01/20 2182 Influenza A virus (A/bald eagle/Idaho/15-002892-2/2015(H5N8)) c KU201800 Avian 4 H5N8 USA 2015/01/20 1744 Influenza A virus (A/bald eagle/Idaho/15-002892-2/2015(H5N8)) c KU201801 Avian 5 H5N8 USA 2015/01/20 1560 Influenza A virus (A/bald eagle/Idaho/15-002892-2/2015(H5N8)) c KU201802 Avian 6 H5N8 USA 2015/01/20 1427 Influenza A virus (A/bald eagle/Idaho/15-002892-2/2015(H5N8)) c KU201803 Avian 7 H5N8 USA 2015/01/20 987 Influenza A virus (A/bald eagle/Idaho/15-002892-2/2015(H5N8)) c KU201804 Avian 8 H5N8 USA 2015/01/20 885 Influenza A virus (A/bald eagle/Idaho/15-002892-2/2015(H5N8)) c KU201789 Avian 1 H5N8 USA 2015/02/06 2287 Influenza A virus (A/chicken/California/15-004912/2015(H5N8)) c KU201790 Avian 2 H5N8 USA 2015/02/06 2290 Influenza A virus (A/chicken/California/15-004912/2015(H5N8)) c KU201791 Avian 3 H5N8 USA 2015/02/06 2182 Influenza A virus (A/chicken/California/15-004912/2015(H5N8)) c KU201792 Avian 4 H5N8 USA 2015/02/06 1744 Influenza A virus (A/chicken/California/15-004912/2015(H5N8)) c KU201793 Avian 5 H5N8 USA 2015/02/06 1524 Influenza A virus (A/chicken/California/15-004912/2015(H5N8)) c KU201794 Avian 6 H5N8 USA 2015/02/06 1427 Influenza A virus (A/chicken/California/15-004912/2015(H5N8)) c KU201795 Avian 7 H5N8 USA 2015/02/06 987 Influenza A virus (A/chicken/California/15-004912/2015(H5N8)) c KU201796 Avian 8 H5N8 USA 2015/02/06 850 Influenza A virus (A/chicken/California/15-004912/2015(H5N8)) c KU201765 Avian 1 H5N8 USA 2014/12/22 2280 Influenza A virus (A/mallard/Idaho/AH0005954/2014(H5N8)) c KU201766 Avian 2 H5N8 USA 2014/12/22 2277 Influenza A virus (A/mallard/Idaho/AH0005954/2014(H5N8)) c KU201767 Avian 3 H5N8 USA 2014/12/22 2151 Influenza A virus (A/mallard/Idaho/AH0005954/2014(H5N8)) c KU201768 Avian 4 H5N8 USA 2014/12/22 1704 Influenza A virus (A/mallard/Idaho/AH0005954/2014(H5N8)) c KU201769 Avian 5 H5N8 USA 2014/12/22 1497 Influenza A virus (A/mallard/Idaho/AH0005954/2014(H5N8)) c KU201770 Avian 6 H5N8 USA 2014/12/22 1413 Influenza A virus (A/mallard/Idaho/AH0005954/2014(H5N8)) c KU201771 Avian 7 H5N8 USA 2014/12/22 982 Influenza A virus (A/mallard/Idaho/AH0005954/2014(H5N8)) c KU201772 Avian 8 H5N8 USA 2014/12/22 838 Influenza A virus (A/mallard/Idaho/AH0005954/2014(H5N8)) c KU201773 Avian 1 H5N8 USA 2014/12/22 2280 Influenza A virus (A/mallard/Idaho/AH0005955/2014(H5N8)) c KU201774 Avian 2 H5N8 USA 2014/12/22 2274 Influenza A virus (A/mallard/Idaho/AH0005955/2014(H5N8)) c KU201775 Avian 3 H5N8 USA 2014/12/22 2151 Influenza A virus (A/mallard/Idaho/AH0005955/2014(H5N8)) c KU201776 Avian 4 H5N8 USA 2014/12/22 1704 Influenza A virus (A/mallard/Idaho/AH0005955/2014(H5N8)) c KU201777 Avian 5 H5N8 USA 2014/12/22 1497 Influenza A virus (A/mallard/Idaho/AH0005955/2014(H5N8)) c KU201778 Avian 6 H5N8 USA 2014/12/22 1413 Influenza A virus (A/mallard/Idaho/AH0005955/2014(H5N8)) c KU201779 Avian 7 H5N8 USA 2014/12/22 982 Influenza A virus (A/mallard/Idaho/AH0005955/2014(H5N8)) c KU201780 Avian 8 H5N8 USA 2014/12/22 838 Influenza A virus (A/mallard/Idaho/AH0005955/2014(H5N8)) c KU201709 Avian 1 H5N2 USA 2015/01/17 2280 Influenza A virus (A/mallard/Idaho/AH0007412/2015(H5N2)) c KU201710 Avian 2 H5N2 USA 2015/01/17 2274 Influenza A virus (A/mallard/Idaho/AH0007412/2015(H5N2)) c KU201711 Avian 3 H5N2 USA 2015/01/17 2151 Influenza A virus (A/mallard/Idaho/AH0007412/2015(H5N2)) c KU201712 Avian 4 H5N2 USA 2015/01/17 1704 Influenza A virus (A/mallard/Idaho/AH0007412/2015(H5N2)) c KU201713 Avian 5 H5N2 USA 2015/01/17 1497 Influenza A virus (A/mallard/Idaho/AH0007412/2015(H5N2)) c KU201714 Avian 6 H5N2 USA 2015/01/17 1410 Influenza A virus (A/mallard/Idaho/AH0007412/2015(H5N2)) c KU201715 Avian 7 H5N2 USA 2015/01/17 982 Influenza A virus (A/mallard/Idaho/AH0007412/2015(H5N2)) c KU201716 Avian 8 H5N2 USA 2015/01/17 838 Influenza A virus (A/mallard/Idaho/AH0007412/2015(H5N2)) c KU201717 Avian 1 H5N2 USA 2015/01/17 2287 Influenza A virus (A/mallard/Idaho/AH0007413/2015(H5N2)) c KU201718 Avian 2 H5N2 USA 2015/01/17 2274 Influenza A virus (A/mallard/Idaho/AH0007413/2015(H5N2)) c KU201719 Avian 3 H5N2 USA 2015/01/17 2182 Influenza A virus (A/mallard/Idaho/AH0007413/2015(H5N2)) c KU201720 Avian 4 H5N2 USA 2015/01/17 1744 Influenza A virus (A/mallard/Idaho/AH0007413/2015(H5N2)) c KU201721 Avian 5 H5N2 USA 2015/01/17 1497 Influenza A virus (A/mallard/Idaho/AH0007413/2015(H5N2)) c KU201722 Avian 6 H5N2 USA 2015/01/17 1426 Influenza A virus (A/mallard/Idaho/AH0007413/2015(H5N2)) c KU201723 Avian 7 H5N2 USA 2015/01/17 987 Influenza A virus (A/mallard/Idaho/AH0007413/2015(H5N2)) c KU201724 Avian 8 H5N2 USA 2015/01/17 838 Influenza A virus (A/mallard/Idaho/AH0007413/2015(H5N2)) c KU201685 Avian 1 H5N8 USA 2015/01/07 2287 Influenza A virus (A/mallard/Idaho/AH0008597/2015(H5N8)) c KU201686 Avian 2 H5N8 USA 2015/01/07 2290 Influenza A virus (A/mallard/Idaho/AH0008597/2015(H5N8)) c KU201687 Avian 3 H5N8 USA 2015/01/07 2182 Influenza A virus (A/mallard/Idaho/AH0008597/2015(H5N8)) c KU201688 Avian 4 H5N8 USA 2015/01/07 1744 Influenza A virus (A/mallard/Idaho/AH0008597/2015(H5N8)) c KU201689 Avian 5 H5N8 USA 2015/01/07 1524 Influenza A virus (A/mallard/Idaho/AH0008597/2015(H5N8)) c KU201690 Avian 6 H5N8 USA 2015/01/07 1427 Influenza A virus (A/mallard/Idaho/AH0008597/2015(H5N8)) c KU201691 Avian 7 H5N8 USA 2015/01/07 987 Influenza A virus (A/mallard/Idaho/AH0008597/2015(H5N8)) c KU201692 Avian 8 H5N8 USA 2015/01/07 850 Influenza A virus (A/mallard/Idaho/AH0008597/2015(H5N8)) c KU201757 Avian 1 H5N8 USA 2015/01/23 2280 Influenza A virus (A/mallard/Nevada/AH0006855/2015(H5N8)) c KU201758 Avian 2 H5N8 USA 2015/01/23 2277 Influenza A virus (A/mallard/Nevada/AH0006855/2015(H5N8)) c KU201759 Avian 3 H5N8 USA 2015/01/23 2151 Influenza A virus (A/mallard/Nevada/AH0006855/2015(H5N8)) c KU201760 Avian 4 H5N8 USA 2015/01/23 1704 Influenza A virus (A/mallard/Nevada/AH0006855/2015(H5N8)) c KU201761 Avian 5 H5N8 USA 2015/01/23 1497 Influenza A virus (A/mallard/Nevada/AH0006855/2015(H5N8)) c KU201762 Avian 6 H5N8 USA 2015/01/23 1413 Influenza A virus (A/mallard/Nevada/AH0006855/2015(H5N8)) c KU201763 Avian 7 H5N8 USA 2015/01/23 982 Influenza A virus (A/mallard/Nevada/AH0006855/2015(H5N8)) c KU201764 Avian 8 H5N8 USA 2015/01/23 838 Influenza A virus (A/mallard/Nevada/AH0006855/2015(H5N8)) c KU201869 Avian 1 H5N8 USA 2014/12/24 2287 Influenza A virus (A/mallard/Oregon/195536/2014(H5N8)) c KU201870 Avian 2 H5N8 USA 2014/12/24 2290 Influenza A virus (A/mallard/Oregon/195536/2014(H5N8)) c KU201871 Avian 3 H5N8 USA 2014/12/24 2182 Influenza A virus (A/mallard/Oregon/195536/2014(H5N8)) c KU201872 Avian 4 H5N8 USA 2014/12/24 1744 Influenza A virus (A/mallard/Oregon/195536/2014(H5N8)) c KU201873 Avian 5 H5N8 USA 2014/12/24 1524 Influenza A virus (A/mallard/Oregon/195536/2014(H5N8)) c KU201874 Avian 6 H5N8 USA 2014/12/24 1427 Influenza A virus (A/mallard/Oregon/195536/2014(H5N8)) c KU201875 Avian 7 H5N8 USA 2014/12/24 987 Influenza A virus (A/mallard/Oregon/195536/2014(H5N8)) c KU201876 Avian 8 H5N8 USA 2014/12/24 850 Influenza A virus (A/mallard/Oregon/195536/2014(H5N8)) c KU201813 Avian 1 H5N2 USA 2014/12/22 2287 Influenza A virus (A/mallard/Oregon/195547/2014(H5N2)) c KU201814 Avian 2 H5N2 USA 2014/12/22 2290 Influenza A virus (A/mallard/Oregon/195547/2014(H5N2)) c KU201815 Avian 3 H5N2 USA 2014/12/22 2182 Influenza A virus (A/mallard/Oregon/195547/2014(H5N2)) c KU201816 Avian 4 H5N2 USA 2014/12/22 1744 Influenza A virus (A/mallard/Oregon/195547/2014(H5N2)) c KU201817 Avian 5 H5N2 USA 2014/12/22 1524 Influenza A virus (A/mallard/Oregon/195547/2014(H5N2)) c KU201818 Avian 6 H5N2 USA 2014/12/22 1426 Influenza A virus (A/mallard/Oregon/195547/2014(H5N2)) c KU201819 Avian 7 H5N2 USA 2014/12/22 987 Influenza A virus (A/mallard/Oregon/195547/2014(H5N2)) c KU201820 Avian 8 H5N2 USA 2014/12/22 850 Influenza A virus (A/mallard/Oregon/195547/2014(H5N2)) c KU201781 Avian 1 H5N2 USA 2014/12/20 2287 Influenza A virus (A/mallard/Oregon/AH0003821/2014(H5N2)) c KU201782 Avian 2 H5N2 USA 2014/12/20 2290 Influenza A virus (A/mallard/Oregon/AH0003821/2014(H5N2)) c KU201783 Avian 3 H5N2 USA 2014/12/20 2182 Influenza A virus (A/mallard/Oregon/AH0003821/2014(H5N2)) c KU201784 Avian 4 H5N2 USA 2014/12/20 1744 Influenza A virus (A/mallard/Oregon/AH0003821/2014(H5N2)) c KU201785 Avian 5 H5N2 USA 2014/12/20 1524 Influenza A virus (A/mallard/Oregon/AH0003821/2014(H5N2)) c KU201786 Avian 6 H5N2 USA 2014/12/20 1426 Influenza A virus (A/mallard/Oregon/AH0003821/2014(H5N2)) c KU201787 Avian 7 H5N2 USA 2014/12/20 987 Influenza A virus (A/mallard/Oregon/AH0003821/2014(H5N2)) c KU201788 Avian 8 H5N2 USA 2014/12/20 850 Influenza A virus (A/mallard/Oregon/AH0003821/2014(H5N2)) c KU201621 Avian 1 H5N2 USA 2015/01/05 2287 Influenza A virus (A/mallard/Oregon/AH0003952/2015(H5N2)) c KU201622 Avian 2 H5N2 USA 2015/01/05 2290 Influenza A virus (A/mallard/Oregon/AH0003952/2015(H5N2)) c KU201623 Avian 3 H5N2 USA 2015/01/05 2182 Influenza A virus (A/mallard/Oregon/AH0003952/2015(H5N2)) c KU201624 Avian 4 H5N2 USA 2015/01/05 1744 Influenza A virus (A/mallard/Oregon/AH0003952/2015(H5N2)) c KU201625 Avian 5 H5N2 USA 2015/01/05 1524 Influenza A virus (A/mallard/Oregon/AH0003952/2015(H5N2)) c KU201626 Avian 6 H5N2 USA 2015/01/05 1426 Influenza A virus (A/mallard/Oregon/AH0003952/2015(H5N2)) c KU201627 Avian 7 H5N2 USA 2015/01/05 987 Influenza A virus (A/mallard/Oregon/AH0003952/2015(H5N2)) c KU201628 Avian 8 H5N2 USA 2015/01/05 850 Influenza A virus (A/mallard/Oregon/AH0003952/2015(H5N2)) c KU201693 Avian 1 H5N2 USA 2015/01/07 2287 Influenza A virus (A/mallard/Oregon/AH0008887/2015(H5N2)) c KU201694 Avian 2 H5N2 USA 2015/01/07 2290 Influenza A virus (A/mallard/Oregon/AH0008887/2015(H5N2)) c KU201695 Avian 3 H5N2 USA 2015/01/07 2182 Influenza A virus (A/mallard/Oregon/AH0008887/2015(H5N2)) c KU201696 Avian 4 H5N2 USA 2015/01/07 1744 Influenza A virus (A/mallard/Oregon/AH0008887/2015(H5N2)) c KU201697 Avian 5 H5N2 USA 2015/01/07 1524 Influenza A virus (A/mallard/Oregon/AH0008887/2015(H5N2)) c KU201698 Avian 6 H5N2 USA 2015/01/07 1426 Influenza A virus (A/mallard/Oregon/AH0008887/2015(H5N2)) c KU201699 Avian 7 H5N2 USA 2015/01/07 987 Influenza A virus (A/mallard/Oregon/AH0008887/2015(H5N2)) c KU201700 Avian 8 H5N2 USA 2015/01/07 850 Influenza A virus (A/mallard/Oregon/AH0008887/2015(H5N2)) c KU201893 Avian 1 H5N2 USA 2014/12/08 2287 Influenza A virus (A/mallard/Washington/195246/2014(H5N2)) c KU201894 Avian 2 H5N2 USA 2014/12/08 2290 Influenza A virus (A/mallard/Washington/195246/2014(H5N2)) c KU201895 Avian 3 H5N2 USA 2014/12/08 2182 Influenza A virus (A/mallard/Washington/195246/2014(H5N2)) c KU201896 Avian 4 H5N2 USA 2014/12/08 1744 Influenza A virus (A/mallard/Washington/195246/2014(H5N2)) c KU201897 Avian 5 H5N2 USA 2014/12/08 1524 Influenza A virus (A/mallard/Washington/195246/2014(H5N2)) c KU201898 Avian 6 H5N2 USA 2014/12/08 1426 Influenza A virus (A/mallard/Washington/195246/2014(H5N2)) c KU201899 Avian 7 H5N2 USA 2014/12/08 987 Influenza A virus (A/mallard/Washington/195246/2014(H5N2)) c KU201900 Avian 8 H5N2 USA 2014/12/08 850 Influenza A virus (A/mallard/Washington/195246/2014(H5N2)) c KU201909 Avian 1 H5N2 USA 2014/12/23 2287 Influenza A virus (A/mallard/Washington/195810/2014(H5N2)) c KU201910 Avian 2 H5N2 USA 2014/12/23 2290 Influenza A virus (A/mallard/Washington/195810/2014(H5N2)) c KU201911 Avian 3 H5N2 USA 2014/12/23 2182 Influenza A virus (A/mallard/Washington/195810/2014(H5N2)) c KU201912 Avian 4 H5N2 USA 2014/12/23 1744 Influenza A virus (A/mallard/Washington/195810/2014(H5N2)) c KU201913 Avian 5 H5N2 USA 2014/12/23 1524 Influenza A virus (A/mallard/Washington/195810/2014(H5N2)) c KU201914 Avian 6 H5N2 USA 2014/12/23 1426 Influenza A virus (A/mallard/Washington/195810/2014(H5N2)) c KU201915 Avian 7 H5N2 USA 2014/12/23 987 Influenza A virus (A/mallard/Washington/195810/2014(H5N2)) c KU201916 Avian 8 H5N2 USA 2014/12/23 850 Influenza A virus (A/mallard/Washington/195810/2014(H5N2)) c KU201829 Avian 1 H5N2 USA 2015/01/01 2287 Influenza A virus (A/mallard/Washington/196262/2015(H5N2)) c KU201830 Avian 2 H5N2 USA 2015/01/01 2290 Influenza A virus (A/mallard/Washington/196262/2015(H5N2)) c KU201831 Avian 3 H5N2 USA 2015/01/01 2182 Influenza A virus (A/mallard/Washington/196262/2015(H5N2)) c KU201832 Avian 4 H5N2 USA 2015/01/01 1744 Influenza A virus (A/mallard/Washington/196262/2015(H5N2)) c KU201833 Avian 5 H5N2 USA 2015/01/01 1524 Influenza A virus (A/mallard/Washington/196262/2015(H5N2)) c KU201834 Avian 6 H5N2 USA 2015/01/01 1426 Influenza A virus (A/mallard/Washington/196262/2015(H5N2)) c KU201835 Avian 7 H5N2 USA 2015/01/01 987 Influenza A virus (A/mallard/Washington/196262/2015(H5N2)) c KU201836 Avian 8 H5N2 USA 2015/01/01 850 Influenza A virus (A/mallard/Washington/196262/2015(H5N2)) c KU201845 Avian 1 H5N2 USA 2015/01/10 2280 Influenza A virus (A/mallard/Washington/196865/2015(H5N2)) c KU201846 Avian 2 H5N2 USA 2015/01/10 2274 Influenza A virus (A/mallard/Washington/196865/2015(H5N2)) c KU201847 Avian 3 H5N2 USA 2015/01/10 2151 Influenza A virus (A/mallard/Washington/196865/2015(H5N2)) c KU201848 Avian 4 H5N2 USA 2015/01/10 1704 Influenza A virus (A/mallard/Washington/196865/2015(H5N2)) c KU201849 Avian 5 H5N2 USA 2015/01/10 1497 Influenza A virus (A/mallard/Washington/196865/2015(H5N2)) c KU201850 Avian 6 H5N2 USA 2015/01/10 1410 Influenza A virus (A/mallard/Washington/196865/2015(H5N2)) c KU201851 Avian 7 H5N2 USA 2015/01/10 982 Influenza A virus (A/mallard/Washington/196865/2015(H5N2)) c KU201852 Avian 8 H5N2 USA 2015/01/10 838 Influenza A virus (A/mallard/Washington/196865/2015(H5N2)) c KU201901 Avian 1 H5N8 USA 2014/12/29 2287 Influenza A virus (A/peregrine falcon/Washington/196426/2014(H5N8)) c KU201902 Avian 2 H5N8 USA 2014/12/29 2290 Influenza A virus (A/peregrine falcon/Washington/196426/2014(H5N8)) c KU201903 Avian 3 H5N8 USA 2014/12/29 2182 Influenza A virus (A/peregrine falcon/Washington/196426/2014(H5N8)) c KU201904 Avian 4 H5N8 USA 2014/12/29 1744 Influenza A virus (A/peregrine falcon/Washington/196426/2014(H5N8)) c KU201905 Avian 5 H5N8 USA 2014/12/29 1524 Influenza A virus (A/peregrine falcon/Washington/196426/2014(H5N8)) c KU201906 Avian 6 H5N8 USA 2014/12/29 1427 Influenza A virus (A/peregrine falcon/Washington/196426/2014(H5N8)) c KU201907 Avian 7 H5N8 USA 2014/12/29 987 Influenza A virus (A/peregrine falcon/Washington/196426/2014(H5N8)) c KU201908 Avian 8 H5N8 USA 2014/12/29 850 Influenza A virus (A/peregrine falcon/Washington/196426/2014(H5N8)) c KU201605 Avian 1 H5N2 USA 2015/03 2287 Influenza A virus (A/snow goose/Missouri/15-011246-1/2015(H5N2)) c KU201606 Avian 2 H5N2 USA 2015/03 2290 Influenza A virus (A/snow goose/Missouri/15-011246-1/2015(H5N2)) c KU201607 Avian 3 H5N2 USA 2015/03 2182 Influenza A virus (A/snow goose/Missouri/15-011246-1/2015(H5N2)) c KU201608 Avian 4 H5N2 USA 2015/03 1744 Influenza A virus (A/snow goose/Missouri/15-011246-1/2015(H5N2)) c KU201609 Avian 5 H5N2 USA 2015/03 1524 Influenza A virus (A/snow goose/Missouri/15-011246-1/2015(H5N2)) c KU201610 Avian 6 H5N2 USA 2015/03 1426 Influenza A virus (A/snow goose/Missouri/15-011246-1/2015(H5N2)) c KU201611 Avian 7 H5N2 USA 2015/03 987 Influenza A virus (A/snow goose/Missouri/15-011246-1/2015(H5N2)) c KU201612 Avian 8 H5N2 USA 2015/03 850 Influenza A virus (A/snow goose/Missouri/15-011246-1/2015(H5N2)) c KU201933 Avian 1 H5N2 USA 2015/04/13 2287 Influenza A virus (A/snowy owl/Wisconsin/198399/2015(H5N2)) c KU201934 Avian 2 H5N2 USA 2015/04/13 2290 Influenza A virus (A/snowy owl/Wisconsin/198399/2015(H5N2)) c KU201935 Avian 3 H5N2 USA 2015/04/13 2182 Influenza A virus (A/snowy owl/Wisconsin/198399/2015(H5N2)) c KU201936 Avian 4 H5N2 USA 2015/04/13 1744 Influenza A virus (A/snowy owl/Wisconsin/198399/2015(H5N2)) c KU201937 Avian 5 H5N2 USA 2015/04/13 1524 Influenza A virus (A/snowy owl/Wisconsin/198399/2015(H5N2)) c KU201938 Avian 6 H5N2 USA 2015/04/13 1426 Influenza A virus (A/snowy owl/Wisconsin/198399/2015(H5N2)) c KU201939 Avian 7 H5N2 USA 2015/04/13 987 Influenza A virus (A/snowy owl/Wisconsin/198399/2015(H5N2)) c KU201940 Avian 8 H5N2 USA 2015/04/13 850 Influenza A virus (A/snowy owl/Wisconsin/198399/2015(H5N2)) cKU201637 Avian 1 H5N2 USA 2015/01/03 2287 Influenza A virus (A/wood duck/Oregon/AH0007244/2015(H5N2)) c KU201638 Avian 2 H5N2 USA 2015/01/03 2290 Influenza A virus (A/wood duck/Oregon/AH0007244/2015(H5N2)) c KU201639 Avian 3 H5N2 USA 2015/01/03 2182 Influenza A virus (A/wood duck/Oregon/AH0007244/2015(H5N2)) c KU201640 Avian 4 H5N2 USA 2015/01/03 1744 Influenza A virus (A/wood duck/Oregon/AH0007244/2015(H5N2)) c KU201641 Avian 5 H5N2 USA 2015/01/03 1524 Influenza A virus (A/wood duck/Oregon/AH0007244/2015(H5N2)) c KU201642 Avian 6 H5N2 USA 2015/01/03 1426 Influenza A virus (A/wood duck/Oregon/AH0007244/2015(H5N2)) c KU201643 Avian 7 H5N2 USA 2015/01/03 987 Influenza A virus (A/wood duck/Oregon/AH0007244/2015(H5N2)) c KU201644 Avian 8 H5N2 USA 2015/01/03 850 Influenza A virus (A/wood duck/Oregon/AH0007244/2015(H5N2)) c KU201645 Avian 1 H5N2 USA 2015/01/03 2287 Influenza A virus (A/wood duck/Oregon/AH0007257/2015(H5N2)) c KU201646 Avian 2 H5N2 USA 2015/01/03 2274 Influenza A virus (A/wood duck/Oregon/AH0007257/2015(H5N2)) c KU201647 Avian 3 H5N2 USA 2015/01/03 2182 Influenza A virus (A/wood duck/Oregon/AH0007257/2015(H5N2)) c KU201648 Avian 4 H5N2 USA 2015/01/03 1744 Influenza A virus (A/wood duck/Oregon/AH0007257/2015(H5N2)) c KU201649 Avian 5 H5N2 USA 2015/01/03 1497 Influenza A virus (A/wood duck/Oregon/AH0007257/2015(H5N2)) c KU201650 Avian 6 H5N2 USA 2015/01/03 1426 Influenza A virus (A/wood duck/Oregon/AH0007257/2015(H5N2)) c KU201651 Avian 7 H5N2 USA 2015/01/03 982 Influenza A virus (A/wood duck/Oregon/AH0007257/2015(H5N2)) c KU201652 Avian 8 H5N2 USA 2015/01/03 838 Influenza A virus (A/wood duck/Oregon/AH0007257/2015(H5N2)) c KU201653 Avian 1 H5N2 USA 2015/01/03 2287 Influenza A virus (A/wood duck/Oregon/AH0007263/2015(H5N2)) c KU201654 Avian 2 H5N2 USA 2015/01/03 2290 Influenza A virus (A/wood duck/Oregon/AH0007263/2015(H5N2)) c KU201655 Avian 3 H5N2 USA 2015/01/03 2182 Influenza A virus (A/wood duck/Oregon/AH0007263/2015(H5N2)) c KU201656 Avian 4 H5N2 USA 2015/01/03 1744 Influenza A virus (A/wood duck/Oregon/AH0007263/2015(H5N2)) c KU201657 Avian 5 H5N2 USA 2015/01/03 1524 Influenza A virus (A/wood duck/Oregon/AH0007263/2015(H5N2)) c KU201658 Avian 6 H5N2 USA 2015/01/03 1426 Influenza A virus (A/wood duck/Oregon/AH0007263/2015(H5N2)) c KU201659 Avian 7 H5N2 USA 2015/01/03 987 Influenza A virus (A/wood duck/Oregon/AH0007263/2015(H5N2)) c KU201660 Avian 8 H5N2 USA 2015/01/03 850 Influenza A virus (A/wood duck/Oregon/AH0007263/2015(H5N2)) c
niman Posted December 24, 2015 Author Report Posted December 24, 2015 LOCUS KU201640 1744 bp cRNA linear VRL 22-DEC-2015 DEFINITION Influenza A virus (A/wood duck/Oregon/AH0007244/2015(H5N2)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION KU201640 VERSION KU201640.1 GI:965569499 KEYWORDS . SOURCE Influenza A virus (A/wood duck/Oregon/AH0007244/2015(H5N2)) ORGANISM Influenza A virus (A/wood duck/Oregon/AH0007244/2015(H5N2)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1744) AUTHORS Killian,M.L. TITLE Direct Submission JOURNAL Submitted (25-NOV-2015) Diagnostic Virology Laboratory, National Veterinary Services Laboratories (NVSL), USDA APHIS VS, 1920 Dayton Avenue, Ames, IA 50010, USA COMMENT GenBank Accession Numbers KU201637-KU201644 represent sequences from the 8 segments of Influenza A virus (A/wood duck/Oregon/AH0007244/2015(H5N2)). ##Assembly-Data-START## Assembly Method :: SeqMan NGen v. v4 Sequencing Technology :: Illumina; IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1744 /organism="Influenza A virus (A/wood duck/Oregon/AH0007244/2015(H5N2))" /mol_type="viral cRNA" /strain="A/wood duck/Oregon/AH0007244/2015" /serotype="H5N2" /isolation_source="oropharyngeal/cloacal swab pool from individual bird" /host="wood duck; hunter harvest" /db_xref="taxon:1763731" /segment="4" /country="USA: Morrow County, Oregon" /collection_date="03-Jan-2015" /note="NVSL 15-000946-3; EP1; Eurasian origin (EA-H5N8 clade 2.3.4.4)-North American reassortant" gene 17..1720 /gene="HA" CDS 17..1720 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="ALT19501.1" /db_xref="GI:965569500" /translation="MEKIVLLFAVISLVKSDQICIGYHANNSTKQVDTIMEKNVTVTH AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA NDLCYPGTLNDYEELKHLLSRINHFEKTLIIPRSSWPNHETSLGVSAACPYQGASSFF RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAAEQTNLYKNPDTYVSVGT STLNQRLVPKIATRSQVNGQSGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG DSTIMKSEMEYGHCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR NSPLRERRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPKYS EEAILKREEISGVKLESIGTYQILSIYSTVASSLALAIIVAGLSLWMCSNGSLQCRIC I" sig_peptide 17..64 /gene="HA" mat_peptide 65..1051 /gene="HA" /product="HA1" mat_peptide 1052..1717 /gene="HA" /product="HA2" ORIGIN 1 ggttcaatct gtcaaaatgg agaaaatagt gcttcttttt gcagtgatta gccttgttaa 61 aagtgatcag atttgcattg gttaccatgc aaacaactca acaaagcagg ttgacacgat 121 aatggagaaa aacgtcactg ttacacatgc ccaagacata ctggaaaaga cacacaacgg 181 gaagctctgc gatcttaatg gagtgaagcc cctgattcta aaggattgta gcgtagctgg 241 gtggctcctt ggaaatccaa tgtgcgacga gttcatcagg gtaccggaat ggtcttacat 301 cgtggagagg gctaacccag ccaacgacct ctgttaccca gggaccctca atgactatga 361 ggaactgaaa cacctattga gcagaataaa tcattttgag aaaactctga tcatccccag 421 gagttcttgg cccaatcatg aaacatcatt aggggtgagc gcagcatgtc cataccaggg 481 agcatcctca tttttcagaa atgtggtatg gctcatcaaa aagaacgatg catacccgac 541 aataaagata agctacaata ataccaatcg ggaagatctt ttgatactgt gggggattca 601 tcattccaac aatgcagcag agcagacaaa tctctataaa aacccagaca cttatgtttc 661 cgttgggaca tcaacattaa accagagatt ggtgccaaaa atagctacta gatcccaagt 721 aaacgggcag agtggaagaa tggatttctt ctggacaatt ttaaaaccga atgatgcaat 781 ccactttgag agtaatggaa atttcattgc tccagaatat gcatacaaaa ttgtcaagaa 841 aggggactca acaattatga aaagtgaaat ggagtatggc cactgcaaca ccaaatgtca 901 aactccaata ggggcgataa actctagcat gccattccac aatatacacc ctctcaccat 961 cggggaatgc cccaaatacg tgaagtcaaa caaattagtc cttgcgactg ggctcagaaa 1021 tagtcctcta agagaaagaa gaagaaaaag aggactattt ggagctatag cagggtttat 1081 agagggagga tggcagggaa tggtagacgg ttggtatggg tatcatcata gcaatgagca 1141 ggggagtggg tacgctgcag acaaagaatc aacccaaaag gcaatagatg gagttaccaa 1201 taaggtcaac tcaatcattg acaaaatgaa cactcaattt gaggccgttg gaagggaatt 1261 taataactta gaaaggagaa tagagaattt aaacaagaaa atggaagacg gattcctaga 1321 tgtctggact tataatgctg aacttttagt tctcatggaa aatgagagaa ctctagattt 1381 ccatgactca aatgtcaaga acctttacga caaagtccga ctacagctta gggataatgc 1441 aaaggagctg ggtaatggtt gtttcgagtt ctatcacaaa tgtgataacg aatgtatgga 1501 gagcgtaaga aatgggacgt atgactaccc taagtattca gaagaagcaa tattaaaaag 1561 agaagaaata agcggagtga aattagaatc aataggaact taccagatac tgtcaattta 1621 ttcaacagtg gcgagttccc tagcactggc aatcatagtg gctggtctat ctttatggat 1681 gtgctctaat gggtcgttac aatgcagaat ttgcatctaa atttgtgagc tcagattgta 1741 atta
niman Posted December 24, 2015 Author Report Posted December 24, 2015 LOCUS KU201648 1744 bp cRNA linear VRL 22-DEC-2015 DEFINITION Influenza A virus (A/wood duck/Oregon/AH0007257/2015(H5N2)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION KU201648 VERSION KU201648.1 GI:965569468 KEYWORDS . SOURCE Influenza A virus (A/wood duck/Oregon/AH0007257/2015(H5N2)) ORGANISM Influenza A virus (A/wood duck/Oregon/AH0007257/2015(H5N2)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1744) AUTHORS Killian,M.L. TITLE Direct Submission JOURNAL Submitted (25-NOV-2015) Diagnostic Virology Laboratory, National Veterinary Services Laboratories (NVSL), USDA APHIS VS, 1920 Dayton Avenue, Ames, IA 50010, USA COMMENT GenBank Accession Numbers KU201645-KU201652 represent sequences from the 8 segments of Influenza A virus (A/wood duck/Oregon/AH0007257/2015(H5N2)). ##Assembly-Data-START## Assembly Method :: SeqMan NGen v. v4 Sequencing Technology :: Illumina; IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1744 /organism="Influenza A virus (A/wood duck/Oregon/AH0007257/2015(H5N2))" /mol_type="viral cRNA" /strain="A/wood duck/Oregon/AH0007257/2015" /serotype="H5N2" /isolation_source="oropharyngeal/cloacal swab pool from individual bird" /host="wood duck; hunter harvest" /db_xref="taxon:1763732" /segment="4" /country="USA: Morrow County, Oregon" /collection_date="03-Jan-2015" /note="NVSL 15-000946-7; EP1; Eurasian origin (EA-H5N8 clade 2.3.4.4)-North American reassortant" gene 17..1720 /gene="HA" CDS 17..1720 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="ALT19489.1" /db_xref="GI:965569469" /translation="MEKIVLLFAVISLVKSDQICIGYHANNSTKQVDTIMEKNVTVTH AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA NDLCYPGTLNDYEELKHLLSRINHFEKTLIIPRSSWPNHETSLGVSAACPYQGASSFF RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAAEQTNLYKNPDTYVSVGT STLNQRLVPKIATRSQVNGQSGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG DSTIMKSEMEYGHCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR NSPLRERRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPKYS EEAILKREEISGVKLESIGTYQILSIYSTVASSLALAIIVAGLSLWMCSNGSLQCRIC I" sig_peptide 17..64 /gene="HA" mat_peptide 65..1051 /gene="HA" /product="HA1" mat_peptide 1052..1717 /gene="HA" /product="HA2" ORIGIN 1 ggttcaatgt gacaaaatgg agaaaatagt gcttcttttt gcagtgatta gccttgttaa 61 aagtgatcag atttgcattg gttaccatgc aaacaactca acaaagcagg ttgacacgat 121 aatggagaaa aacgtcactg ttacacatgc ccaagacata ctggaaaaga cacacaacgg 181 gaagctctgc gatcttaatg gagtgaagcc cctgattcta aaggattgta gcgtagctgg 241 gtggctcctt ggaaatccaa tgtgcgacga gttcatcagg gtaccggaat ggtcttacat 301 cgtggagagg gctaacccag ccaacgacct ctgttaccca gggaccctca atgactatga 361 ggaactgaaa cacctattga gcagaataaa tcattttgag aaaactctga tcatccccag 421 gagttcttgg cccaatcatg aaacatcatt aggggtgagc gcagcatgtc cataccaggg 481 agcatcctca tttttcagaa atgtggtatg gctcatcaaa aagaacgatg catacccgac 541 aataaagata agctacaata ataccaatcg ggaagatctt ttgatactgt gggggattca 601 tcattccaac aatgcagcag agcagacaaa tctctataaa aacccagaca cttatgtttc 661 cgttgggaca tcaacattaa accagagatt ggtgccaaaa atagctacta gatcccaagt 721 aaacgggcag agtggaagaa tggatttctt ctggacaatt ttaaaaccga atgatgcaat 781 ccactttgag agtaatggaa atttcattgc tccagaatat gcatacaaaa ttgtcaagaa 841 aggggactca acaattatga aaagtgaaat ggagtatggc cactgcaaca ccaaatgtca 901 aactccaata ggggcgataa actctagcat gccattccac aatatacacc ctctcaccat 961 cggggaatgc cccaaatacg tgaagtcaaa caaattagtc cttgcgactg ggctcagaaa 1021 tagtcctcta agagaaagaa gaagaaaaag aggactattt ggagctatag cagggtttat 1081 agagggagga tggcagggaa tggtagacgg ttggtatggg tatcatcata gcaatgagca 1141 ggggagtggg tacgctgcag acaaagaatc aacccaaaag gcaatagatg gagttaccaa 1201 taaggtcaac tcaatcattg acaaaatgaa cactcaattt gaggccgttg gaagggaatt 1261 taataactta gaaaggagaa tagagaattt aaacaagaaa atggaagacg gattcctaga 1321 tgtctggact tataatgctg aacttttagt tctcatggaa aatgagagaa ctctagattt 1381 ccatgactca aatgtcaaga acctttacga caaagtccga ctacagctta gggataatgc 1441 aaaggagctg ggtaatggtt gtttcgagtt ctatcacaaa tgtgataacg aatgtatgga 1501 gagcgtaaga aatgggacgt atgactaccc taagtattca gaagaagcaa tattaaaaag 1561 agaagaaata agcggagtga aattagaatc aataggaact taccagatac tgtcaattta 1621 ttcaacagtg gcgagttccc tagcactggc aatcatagtg gctggtctat ctttatggat 1681 gtgctctaat gggtcgttac aatgcagaat ttgcatctaa atttgtgagc tcagattgta 1741 atta
niman Posted December 24, 2015 Author Report Posted December 24, 2015 LOCUS KU201656 1744 bp cRNA linear VRL 22-DEC-2015 DEFINITION Influenza A virus (A/wood duck/Oregon/AH0007263/2015(H5N2)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION KU201656 VERSION KU201656.1 GI:965569429 KEYWORDS . SOURCE Influenza A virus (A/wood duck/Oregon/AH0007263/2015(H5N2)) ORGANISM Influenza A virus (A/wood duck/Oregon/AH0007263/2015(H5N2)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1744) AUTHORS Killian,M.L. TITLE Direct Submission JOURNAL Submitted (25-NOV-2015) Diagnostic Virology Laboratory, National Veterinary Services Laboratories (NVSL), USDA APHIS VS, 1920 Dayton Avenue, Ames, IA 50010, USA COMMENT GenBank Accession Numbers KU201653-KU201660 represent sequences from the 8 segments of Influenza A virus (A/wood duck/Oregon/AH0007263/2015(H5N2)). ##Assembly-Data-START## Assembly Method :: SeqMan NGen v. v4 Sequencing Technology :: Illumina; IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1744 /organism="Influenza A virus (A/wood duck/Oregon/AH0007263/2015(H5N2))" /mol_type="viral cRNA" /strain="A/wood duck/Oregon/AH0007263/2015" /serotype="H5N2" /isolation_source="oropharyngeal/cloacal swab pool from individual bird" /host="wood duck; hunter harvest" /db_xref="taxon:1763733" /segment="4" /country="USA: Morrow County, Oregon" /collection_date="03-Jan-2015" /note="NVSL 15-000946-8; EP1; Eurasian origin (EA-H5N8 clade 2.3.4.4)-North American reassortant" gene 17..1720 /gene="HA" CDS 17..1720 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="ALT19477.1" /db_xref="GI:965569430" /translation="MEKIVLLFAVISLVKSDQICIGYHANNSTKQVDTIMEKNVTVTH AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRIPEWSYIVERANPA NDLCYPGTLNDYEELKHLLSRINHFEKTLIIPRSSWPNHETSLGVSAACPYQGASSFF RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAAEQTNLYKNPDTYVSVGT STLNQRLVPKIATRSQVNGQSGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG DSTIMKSEMEYGHCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR NSPLRERRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPKYS EEAILKREEISGVKLESIGTYQILSIYSTVASSLALAIIVAGLSLWMCSNGSLQCRIC I" sig_peptide 17..64 /gene="HA" mat_peptide 65..1051 /gene="HA" /product="HA1" mat_peptide 1052..1717 /gene="HA" /product="HA2" ORIGIN 1 ggttcaatct gtcaaaatgg agaaaatagt gcttcttttt gcagtgatta gccttgttaa 61 aagtgatcag atttgcattg gttaccatgc aaacaactca acaaagcagg ttgacacgat 121 aatggagaaa aacgtcactg ttacacatgc ccaagacata ctggaaaaga cacacaacgg 181 gaagctctgc gatcttaatg gagtgaagcc cctgattcta aaggattgta gcgtagctgg 241 gtggctcctt ggaaatccaa tgtgcgacga gttcatcagg ataccggaat ggtcttacat 301 cgtggagagg gctaacccag ccaacgacct ctgttaccca gggaccctca atgactatga 361 ggaactgaaa cacctattga gcagaataaa tcattttgag aaaactctga tcatccccag 421 gagttcttgg cccaatcatg aaacatcatt aggggtgagc gcagcatgtc cataccaggg 481 agcatcctca tttttcagaa atgtggtatg gctcatcaaa aagaacgatg catacccgac 541 aataaagata agctacaata ataccaatcg ggaagatctt ttgatactgt gggggattca 601 tcattccaac aatgcagcag agcagacaaa tctctataaa aacccagaca cttatgtttc 661 cgttgggaca tcaacattaa accagagatt ggtgccaaaa atagctacta gatcccaagt 721 aaacgggcag agtggaagaa tggatttctt ctggacaatt ttaaaaccga atgatgcaat 781 ccactttgag agtaatggaa atttcattgc tccagaatat gcatacaaaa ttgtcaagaa 841 aggggactca acaattatga aaagtgaaat ggagtatggc cactgcaaca ccaaatgtca 901 aactccaata ggggcgataa actctagcat gccattccac aatatacacc ctctcaccat 961 cggggaatgc cccaaatacg tgaagtcaaa caaattagtc cttgcgactg ggctcagaaa 1021 tagtcctcta agagaaagaa gaagaaaaag aggactattt ggagctatag cagggtttat 1081 agagggagga tggcagggaa tggtagacgg ttggtatggg tatcatcata gcaatgagca 1141 ggggagtggg tacgctgcag acaaagaatc aacccaaaag gcaatagatg gagttaccaa 1201 taaggtcaac tcaatcattg acaaaatgaa cactcaattt gaggccgttg gaagggaatt 1261 taataactta gaaaggagaa tagagaattt aaacaagaaa atggaagacg gattcctaga 1321 tgtctggact tataatgctg aacttttagt tctcatggaa aatgagagaa ctctagattt 1381 ccatgactca aatgtcaaga acctttacga caaagtccga ctacagctta gggataatgc 1441 aaaggagctg ggtaatggtt gtttcgagtt ctatcacaaa tgtgataacg aatgtatgga 1501 gagcgtaaga aatgggacgt atgactaccc taagtattca gaagaagcaa tattaaaaag 1561 agaagaaata agcggagtga aattagaatc aataggaact taccagatac tgtcaattta 1621 ttcaacagtg gcgagttccc tagcactggc aatcatagtg gctggtctat ctttatggat 1681 gtgctctaat gggtcgttac aatgcagaat ttgcatctaa atttgtgagc tcagattgta 1741 atta
niman Posted December 24, 2015 Author Report Posted December 24, 2015 LOCUS KU201664 1744 bp cRNA linear VRL 22-DEC-2015 DEFINITION Influenza A virus (A/Northern shoveler/Oregon/AH0007332/2015(H5N2)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION KU201664 VERSION KU201664.1 GI:965569394 KEYWORDS . SOURCE Influenza A virus (A/Northern shoveler/Oregon/AH0007332/2015(H5N2)) ORGANISM Influenza A virus (A/Northern shoveler/Oregon/AH0007332/2015(H5N2)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1744) AUTHORS Killian,M.L. TITLE Direct Submission JOURNAL Submitted (25-NOV-2015) Diagnostic Virology Laboratory, National Veterinary Services Laboratories (NVSL), USDA APHIS VS, 1920 Dayton Avenue, Ames, IA 50010, USA COMMENT GenBank Accession Numbers KU201661-KU201668 represent sequences from the 8 segments of Influenza A virus (A/Northern shoveler/Oregon/AH0007332/2015(H5N2)). ##Assembly-Data-START## Assembly Method :: SeqMan NGen v. v4 Sequencing Technology :: Illumina; IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1744 /organism="Influenza A virus (A/Northern shoveler/Oregon/AH0007332/2015(H5N2))" /mol_type="viral cRNA" /strain="A/Northern shoveler/Oregon/AH0007332/2015" /serotype="H5N2" /isolation_source="oropharyngeal/cloacal swab pool from individual bird" /host="Northern shoveler; hunter harvest" /db_xref="taxon:1763708" /segment="4" /country="USA: Morrow County, Oregon" /collection_date="03-Jan-2015" /note="NVSL 15-000946-20; EP1; Eurasian origin (EA-H5N8 clade 2.3.4.4)-North American reassortant" gene 17..1720 /gene="HA" CDS 17..1720 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="ALT19465.1" /db_xref="GI:965569395" /translation="MEKIVLLFAVISLVKSDQICIGYHANNSTKQVDTIMEKNVTVTH AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA NDLCYPGTLNDYEELKHLLSRINHFEKTLIIPRSSWPNHETSLGVSAACPYQGAPSFF RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAAEQTNLYKNPDTYVSVGT STLNQRLVPKIATRSQVNGQSGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG DSTIMKSEMEYGHCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR NSPLRERRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPKYS EEAILKREEISGVKLESIGTYQILSIYSTVASSLALAIIVAGLSLWMCSNGSLQCRIC I" sig_peptide 17..64 /gene="HA" mat_peptide 65..1051 /gene="HA" /product="HA1" mat_peptide 1052..1717 /gene="HA" /product="HA2" ORIGIN 1 ggttcaatct gtcaaaatgg agaaaatagt gcttcttttt gcagtgatta gccttgttaa 61 aagtgatcag atttgcattg gttaccatgc aaacaactca acaaagcagg ttgacacgat 121 aatggagaaa aacgtcactg ttacacatgc ccaagacata ctggaaaaga cacacaacgg 181 gaagctctgc gatcttaatg gagtgaagcc cctgattcta aaggattgta gcgtagctgg 241 gtggctcctt ggaaatccaa tgtgcgacga gttcatcagg gtaccggaat ggtcttacat 301 cgtggagagg gctaacccag ccaacgacct ctgttaccca gggaccctca atgactatga 361 ggaactgaaa cacctattga gcagaataaa tcattttgag aaaactctga tcatccccag 421 gagttcttgg cccaatcatg aaacatcatt aggggtgagc gcagcatgtc cataccaggg 481 agcaccctca tttttcagaa atgtggtatg gctcatcaaa aagaacgacg catacccgac 541 aataaagata agctacaata ataccaatcg ggaagatctt ttgatactgt gggggattca 601 tcattccaac aatgcagcag agcagacaaa tctctataaa aacccagaca cttatgtttc 661 cgttgggaca tcaacattaa accagagatt ggtgccaaaa atagctacta gatcccaagt 721 aaacgggcag agtggaagaa tggatttctt ctggacaatt ttaaaaccga atgatgcaat 781 ccactttgag agtaatggaa atttcattgc tccagaatat gcatacaaaa ttgtcaagaa 841 aggggactca acaattatga aaagtgaaat ggagtatggc cactgcaaca ccaaatgtca 901 aactccaata ggggcgataa actctagcat gccattccac aatatacacc ctctcaccat 961 cggggaatgc cccaaatacg tgaagtcaaa caaattagtc cttgcgactg ggctcagaaa 1021 tagtcctcta agagaaagaa gaagaaaaag aggactattt ggagctatag cagggtttat 1081 agagggagga tggcagggaa tggtagacgg ttggtatggg tatcatcata gcaatgagca 1141 ggggagtggg tacgctgcag acaaagaatc aacccaaaag gcaatagatg gagttaccaa 1201 taaggtcaac tcaatcattg acaaaatgaa cactcaattt gaggccgttg gaagggaatt 1261 taataactta gaaaggagaa tagagaattt aaacaagaaa atggaagacg gattcctaga 1321 tgtctggact tataatgctg aacttttagt tctcatggaa aatgagagaa ctctagattt 1381 ccatgactca aatgtcaaga acctttacga caaagtccga ctacagctta gggataatgc 1441 aaaggagctg ggtaatggtt gtttcgagtt ctatcacaaa tgtgataacg aatgtatgga 1501 gagcgtaaga aatgggacgt atgactaccc taagtattca gaagaagcaa tattaaaaag 1561 agaagaaata agcggagtga aattagaatc aataggaact taccagatac tgtcaattta 1621 ttcaacagtg gcgagttccc tagcactggc aatcatagtg gctggtctat ctttatggat 1681 gtgctctaat ggttcgttac aatgcagaat ttgcatctaa atttgtgagc tcagattgta 1741 atta
niman Posted December 24, 2015 Author Report Posted December 24, 2015 LOCUS KU201672 1744 bp cRNA linear VRL 22-DEC-2015 DEFINITION Influenza A virus (A/Northern shoveler/Oregon/AH0007337/2015(H5N2)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION KU201672 VERSION KU201672.1 GI:965569359 KEYWORDS . SOURCE Influenza A virus (A/Northern shoveler/Oregon/AH0007337/2015(H5N2)) ORGANISM Influenza A virus (A/Northern shoveler/Oregon/AH0007337/2015(H5N2)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1744) AUTHORS Killian,M.L. TITLE Direct Submission JOURNAL Submitted (25-NOV-2015) Diagnostic Virology Laboratory, National Veterinary Services Laboratories (NVSL), USDA APHIS VS, 1920 Dayton Avenue, Ames, IA 50010, USA COMMENT GenBank Accession Numbers KU201669-KU201676 represent sequences from the 8 segments of Influenza A virus (A/Northern shoveler/Oregon/AH0007337/2015(H5N2)). ##Assembly-Data-START## Assembly Method :: SeqMan NGen v. v4 Sequencing Technology :: Illumina; IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1744 /organism="Influenza A virus (A/Northern shoveler/Oregon/AH0007337/2015(H5N2))" /mol_type="viral cRNA" /strain="A/Northern shoveler/Oregon/AH0007337/2015" /serotype="H5N2" /isolation_source="oropharyngeal/cloacal swab pool from individual bird" /host="Northern shoveler; hunter harvest" /db_xref="taxon:1763709" /segment="4" /country="USA: Morrow County, Oregon" /collection_date="03-Jan-2015" /note="NVSL 15-000946-23; EP1; Eurasian origin (EA-H5N8 clade 2.3.4.4)-North American reassortant" gene 17..1720 /gene="HA" CDS 17..1720 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="ALT19453.1" /db_xref="GI:965569360" /translation="MEKIVLLFAVISLVKSDQICIGYHANNSTKQVDTIMEKNVTVTH AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA NDLCYPGTLNDYEELKHLLSRINHFEKTLIIPRSSWPNHETSLGVSAACPYQGAPSFF RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAAEQTNLYKNPDTYVSVGT STLNQRLVPKIATRSQVNGQSGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG DSTIMKSEMEYGHCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR NSPLRERRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPKYS EEAILKREEISGVKLESIGTYQILSIYSTVASSLALAIIVAGLSLWMCSNGSLQCRIC I" sig_peptide 17..64 /gene="HA" mat_peptide 65..1051 /gene="HA" /product="HA1" mat_peptide 1052..1717 /gene="HA" /product="HA2" ORIGIN 1 ggttcaatct gtcaaaatgg agaaaatagt gcttcttttt gcagtgatta gccttgttaa 61 aagtgatcag atttgcattg gttaccatgc aaacaactca acaaagcagg ttgacacgat 121 aatggagaaa aacgtcactg ttacacatgc ccaagacata ctggaaaaga cacacaacgg 181 gaagctctgc gatcttaatg gagtgaagcc cctgattcta aaggattgta gcgtagctgg 241 gtggctcctt ggaaatccaa tgtgcgacga gttcatcagg gtaccggaat ggtcttacat 301 cgtggagagg gctaacccag ccaacgacct ctgttaccca gggaccctca atgactatga 361 ggaactgaaa cacctattga gcagaataaa tcattttgag aaaactctga tcatccccag 421 gagttcttgg cccaatcatg aaacatcatt aggggtgagc gcagcatgtc cataccaggg 481 agcaccctca tttttcagaa atgtggtatg gctcatcaaa aagaacgacg catacccgac 541 aataaagata agctacaata ataccaatcg ggaagatctt ttgatactgt gggggattca 601 tcattccaac aatgcagcag agcagacaaa tctctataaa aacccagaca cttatgtttc 661 cgttgggaca tcaacattaa accagagatt ggtgccaaaa atagctacta gatcccaagt 721 aaacgggcag agtggaagaa tggatttctt ctggacaatt ttaaaaccga atgatgcaat 781 ccactttgag agtaatggaa atttcattgc tccagaatat gcatacaaaa ttgtcaagaa 841 aggggactca acaattatga aaagtgaaat ggagtatggc cactgcaaca ccaaatgtca 901 aactccaata ggggcgataa actctagcat gccattccac aatatacacc ctctcaccat 961 cggggaatgc cccaaatacg tgaagtcaaa caaattagtc cttgcgactg ggctcagaaa 1021 tagtcctcta agagaaagaa gaagaaaaag aggactattt ggagctatag cagggtttat 1081 agagggagga tggcagggaa tggtagacgg ttggtatggg tatcatcata gcaatgagca 1141 ggggagtggg tacgctgcag acaaagaatc aacccaaaag gcaatagatg gagttaccaa 1201 taaggtcaac tcaatcattg acaaaatgaa cactcaattt gaggccgttg gaagggaatt 1261 taataactta gaaaggagaa tagagaattt aaacaagaaa atggaagacg gattcctaga 1321 tgtctggact tataatgctg aacttttagt tctcatggaa aatgagagaa ctctagattt 1381 ccatgactca aatgtcaaga acctttacga caaagtccga ctacagctta gggataatgc 1441 aaaggagctg ggtaatggtt gtttcgagtt ctatcacaaa tgtgataacg aatgtatgga 1501 gagcgtaaga aatgggacgt atgactaccc taagtattca gaagaagcaa tattaaaaag 1561 agaagaaata agcggagtga aattagaatc aataggaact taccagatac tgtcaattta 1621 ttcaacagtg gcgagttccc tagcactggc aatcatagtg gctggtctat ctttatggat 1681 gtgctctaat gggtcgttac aatgcagaat ttgcatctaa atttgtgagc tcagattgta 1741 atta
niman Posted December 24, 2015 Author Report Posted December 24, 2015 LOCUS KU201680 1744 bp cRNA linear VRL 22-DEC-2015 DEFINITION Influenza A virus (A/Northern shoveler/Oregon/AH0007339/2015(H5N2)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION KU201680 VERSION KU201680.1 GI:965569325 KEYWORDS . SOURCE Influenza A virus (A/Northern shoveler/Oregon/AH0007339/2015(H5N2)) ORGANISM Influenza A virus (A/Northern shoveler/Oregon/AH0007339/2015(H5N2)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1744) AUTHORS Killian,M.L. TITLE Direct Submission JOURNAL Submitted (25-NOV-2015) Diagnostic Virology Laboratory, National Veterinary Services Laboratories (NVSL), USDA APHIS VS, 1920 Dayton Avenue, Ames, IA 50010, USA COMMENT GenBank Accession Numbers KU201677-KU201684 represent sequences from the 8 segments of Influenza A virus (A/Northern shoveler/Oregon/AH0007339/2015(H5N2)). ##Assembly-Data-START## Assembly Method :: SeqMan NGen v. v4 Sequencing Technology :: Illumina; IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1744 /organism="Influenza A virus (A/Northern shoveler/Oregon/AH0007339/2015(H5N2))" /mol_type="viral cRNA" /strain="A/Northern shoveler/Oregon/AH0007339/2015" /serotype="H5N2" /isolation_source="oropharyngeal/cloacal swab pool from individual bird" /host="Northern shoveler; hunter harvest" /db_xref="taxon:1763710" /segment="4" /country="USA: Morrow County, Oregon" /collection_date="03-Jan-2015" /note="NVSL 15-000946-25; EP1; Eurasian origin (EA-H5N8 clade 2.3.4.4)-North American reassortant" gene 17..1720 /gene="HA" CDS 17..1720 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="ALT19441.1" /db_xref="GI:965569326" /translation="MEKIVLLFAVISLVKSDQICIGYHANNSTKQVDTIMEKNVTVTH AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA NDLCYPGTLNDYEELKHLLSRINHFEKTLIIPRSSWPNHETSLGVSAACPYQGAPSFF RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAAEQTNLYKNPDTYVSVGT STLNQRLVPKIATRSQVNGQGGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG DSTIMKSEMEYGHCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR NSPLRERRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPKYS EEAILKREEISGVKLESIGTYQILSIYSTVASSLALAIIVAGLSLWMCSNGSLQCRIC I" sig_peptide 17..64 /gene="HA" mat_peptide 65..1051 /gene="HA" /product="HA1" mat_peptide 1052..1717 /gene="HA" /product="HA2" ORIGIN 1 ggttcaatct gtcaaaatgg agaaaatagt gcttcttttt gcagtgatta gccttgttaa 61 aagtgatcag atttgcattg gttaccatgc aaacaactca acaaagcagg ttgacacgat 121 aatggagaaa aacgtcactg ttacacatgc ccaagacata ctggaaaaga cacacaacgg 181 gaagctctgc gatcttaatg gagtgaagcc cctgattcta aaggattgta gcgtagctgg 241 gtggctcctt ggaaatccaa tgtgcgacga gttcatcagg gtaccggaat ggtcttacat 301 cgtggagagg gctaacccag ccaacgacct ctgttaccca gggaccctca atgactatga 361 ggaactgaaa cacctattga gcagaataaa tcattttgag aaaactctga tcatccccag 421 gagttcttgg cccaatcatg aaacatcatt aggggtgagc gcagcatgtc cataccaggg 481 agcaccctca tttttcagaa atgtggtatg gctcatcaaa aagaacgacg catacccgac 541 aataaagata agctacaata ataccaatcg ggaagatctt ttgatactgt gggggattca 601 tcattccaac aatgcagcag agcagacaaa tctctataaa aacccagaca cttatgtttc 661 cgttgggaca tcaacattaa accagagatt ggtgccaaaa atagctacta gatcccaagt 721 aaacgggcag ggtggaagaa tggatttctt ctggacaatt ttaaaaccga atgatgcaat 781 ccactttgag agtaatggaa atttcattgc tccagaatat gcatacaaaa ttgtcaagaa 841 aggggactca acaattatga aaagtgaaat ggagtatggc cactgcaaca ccaaatgtca 901 aactccaata ggggcgataa actctagcat gccattccac aatatacacc ctctcaccat 961 cggggaatgc cccaaatacg tgaagtcaaa caaattagtc cttgcgactg ggctcagaaa 1021 tagtcctcta agagaaagaa gaagaaaaag aggactattt ggagctatag cagggtttat 1081 agagggagga tggcagggaa tggtagacgg ttggtatggg tatcatcata gcaatgagca 1141 ggggagtggg tacgctgcag acaaagaatc aacccaaaag gcaatagatg gagttaccaa 1201 taaggtcaac tcaatcattg acaaaatgaa cactcaattt gaggccgttg gaagggaatt 1261 taataactta gaaaggagaa tagagaattt aaacaagaaa atggaagacg gattcctaga 1321 tgtctggact tataatgctg aacttttagt tctcatggaa aatgagagaa ctctagattt 1381 ccatgactca aatgtcaaga acctttacga caaagtccga ctacagctta gggataatgc 1441 aaaggagctg ggtaatggtt gtttcgagtt ctatcacaaa tgtgataacg aatgtatgga 1501 gagcgtaaga aatgggacgt atgactaccc taagtattca gaagaagcaa tattaaaaag 1561 agaagaaata agcggagtga aattagaatc aataggaact taccagatac tgtcaattta 1621 ttcaacagtg gcgagttccc tagcactggc aatcatagtg gctggtctat ctttatggat 1681 gtgctctaat gggtcgttac aatgcagaat ttgcatctaa atttgtgagc tcagattgta 1741 atta
niman Posted December 24, 2015 Author Report Posted December 24, 2015 LOCUS KU201688 1744 bp cRNA linear VRL 22-DEC-2015 DEFINITION Influenza A virus (A/mallard/Idaho/AH0008597/2015(H5N8)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION KU201688 VERSION KU201688.1 GI:965569286 KEYWORDS . SOURCE Influenza A virus (A/mallard/Idaho/AH0008597/2015(H5N8)) ORGANISM Influenza A virus (A/mallard/Idaho/AH0008597/2015(H5N8)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1744) AUTHORS Killian,M.L. TITLE Direct Submission JOURNAL Submitted (25-NOV-2015) Diagnostic Virology Laboratory, National Veterinary Services Laboratories (NVSL), USDA APHIS VS, 1920 Dayton Avenue, Ames, IA 50010, USA COMMENT GenBank Accession Numbers KU201685-KU201692 represent sequences from the 8 segments of Influenza A virus (A/mallard/Idaho/AH0008597/2015(H5N8)). ##Assembly-Data-START## Assembly Method :: SeqMan NGen v. v4 Sequencing Technology :: Illumina; IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1744 /organism="Influenza A virus (A/mallard/Idaho/AH0008597/2015(H5N8))" /mol_type="viral cRNA" /strain="A/mallard/Idaho/AH0008597/2015" /serotype="H5N8" /isolation_source="oropharyngeal/cloacal swab pool from individual bird" /host="mallard; hunter harvest" /db_xref="taxon:1763717" /segment="4" /country="USA: Gooding County, Idaho" /collection_date="07-Jan-2015" /note="NVSL 15-001363-3; EP1; Eurasian origin H5N8 clade 2.3.4.4" gene 17..1720 /gene="HA" CDS 17..1720 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="ALT19429.1" /db_xref="GI:965569287" /translation="MEKIVLLLAVISLVKSDQICIGYHANNSTKQVDTIMEKNVTVTH AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA NDLCYPGTLNDYEELKHLLSRINHFEKTLIIPRSSWPNHETSLGVSAACPYQGASSFF RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAAEQTNLYKNPDTYVSVGT STLNQRLVPKIATRSQVNGQSGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG DSTIMKSEMEYGHCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR NSPLRERRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPKYS EEAILKREEISGVKLESIGTYQILSIYSTVASSLALAIIVAGLSLWMCSNGSLQCRIC I" sig_peptide 17..64 /gene="HA" mat_peptide 65..1051 /gene="HA" /product="HA1" mat_peptide 1052..1717 /gene="HA" /product="HA2" ORIGIN 1 ggttcaatct gtcaaaatgg agaaaatagt gcttcttctt gcagtgatta gccttgttaa 61 aagtgatcag atttgcattg gttaccatgc aaacaactca acaaagcagg ttgacacgat 121 aatggagaaa aacgtcactg ttacacatgc ccaagacata ctggaaaaga cacacaacgg 181 gaagctctgc gatcttaatg gagtgaagcc cctgattcta aaggattgta gcgtagctgg 241 gtggctcctt ggaaatccaa tgtgcgacga gttcatcagg gtaccggaat ggtcttacat 301 cgtggagagg gctaatccag ccaacgacct atgttaccca gggaccctca atgactatga 361 ggaactgaaa cacctattga gcagaataaa tcattttgag aaaactctga tcatccccag 421 gagttcttgg cccaatcatg aaacatcatt aggggtgagc gcagcatgtc cataccaggg 481 agcatcctca tttttcagaa atgtggtatg gctcatcaaa aagaacgatg catacccgac 541 aataaagata agctacaata ataccaatcg ggaagatctt ttgatactgt gggggattca 601 tcattccaac aatgcagcag agcagacaaa tctctataaa aacccagaca cttatgtttc 661 cgttgggaca tcaacattaa accagagatt ggtgccaaaa atagctacta gatcccaagt 721 aaacgggcag agtggaagaa tggatttctt ctggacaatt ttaaaaccga atgatgcaat 781 ccactttgag agtaatggaa atttcattgc tccagaatat gcatacaaaa ttgtcaagaa 841 aggggactca acaattatga aaagtgaaat ggagtatggc cactgcaaca ccaaatgtca 901 aactccaata ggggcgataa actctagcat gccattccac aatatacacc ctctcaccat 961 cggggaatgc cccaaatacg tgaagtcaaa caaattagtc cttgcgactg ggctcagaaa 1021 tagtcctcta agagaaagaa gaagaaaaag aggactattt ggagctatag cagggtttat 1081 agagggagga tggcagggaa tggtagacgg ttggtatggg tatcatcata gcaatgagca 1141 ggggagtggg tacgctgcag acaaagaatc cacccaaaag gcaatagatg gagttaccaa 1201 taaggtcaac tcaatcattg acaaaatgaa cactcaattt gaggccgttg gaagggaatt 1261 taataactta gaaaggagaa tagagaattt aaacaagaaa atggaagacg gattcctaga 1321 tgtctggact tataatgctg aacttttagt tctcatggaa aatgagagaa ctctagattt 1381 tcatgactca aatgtcaaga acctttacga caaagtccga ctacagctta gggataatgc 1441 aaaggagctg ggcaatggtt gtttcgagtt ctatcacaaa tgtgataacg aatgtatgga 1501 gagcgtaaga aatgggacgt atgactaccc taagtattca gaagaagcaa tattaaaaag 1561 agaagaaata agcggagtga aattagaatc aataggaact taccagatac tgtcaattta 1621 ttcaacagtg gcgagttccc tagcactggc aatcatagtg gctggtctat ctttatggat 1681 gtgctctaat gggtcgttac aatgcagaat ttgcatctaa atttgtgagc tcagattgta 1741 atta
niman Posted December 24, 2015 Author Report Posted December 24, 2015 LOCUS KU201696 1744 bp cRNA linear VRL 22-DEC-2015 DEFINITION Influenza A virus (A/mallard/Oregon/AH0008887/2015(H5N2)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION KU201696 VERSION KU201696.1 GI:965569246 KEYWORDS . SOURCE Influenza A virus (A/mallard/Oregon/AH0008887/2015(H5N2)) ORGANISM Influenza A virus (A/mallard/Oregon/AH0008887/2015(H5N2)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1744) AUTHORS Killian,M.L. TITLE Direct Submission JOURNAL Submitted (25-NOV-2015) Diagnostic Virology Laboratory, National Veterinary Services Laboratories (NVSL), USDA APHIS VS, 1920 Dayton Avenue, Ames, IA 50010, USA COMMENT GenBank Accession Numbers KU201693-KU201700 represent sequences from the 8 segments of Influenza A virus (A/mallard/Oregon/AH0008887/2015(H5N2)). ##Assembly-Data-START## Assembly Method :: SeqMan NGen v. v4 Sequencing Technology :: Illumina; IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1744 /organism="Influenza A virus (A/mallard/Oregon/AH0008887/2015(H5N2))" /mol_type="viral cRNA" /strain="A/mallard/Oregon/AH0008887/2015" /serotype="H5N2" /isolation_source="oropharyngeal/cloacal swab pool from individual bird" /host="mallard; hunter harvest" /db_xref="taxon:1763723" /segment="4" /country="USA: Lane County, Oregon" /collection_date="07-Jan-2015" /note="NVSL 15-001515-1; EP1; Eurasian origin (EA-H5N8 clade 2.3.4.4)-North American reassortant" gene 17..1720 /gene="HA" CDS 17..1720 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="ALT19417.1" /db_xref="GI:965569247" /translation="MEKIVLLFAVISLVKSDQICIGYHANNSTKQVDTIMEKNVTVTH AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA NDLCYPGTLNDYEELKHLLSRINHFEKTLIIPRSSWPNHETSLGVSAACPYQGASSFF RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAAEQTNLYKNPDTYVSVGT STLNQRLVPKIATRSQVNGQSGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG DSTIMKSEMEYGHCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR NSPLRERRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPKYS EEAILKREEISGVKLESIGTYQILSIYSTVASSLALAIIVAGLSLWMCSNGSLQCRIC I" sig_peptide 17..64 /gene="HA" mat_peptide 65..1051 /gene="HA" /product="HA1" mat_peptide 1052..1717 /gene="HA" /product="HA2" ORIGIN 1 ggttcaatct gtcaaaatgg agaaaatagt gcttcttttt gcagtgatta gccttgttaa 61 aagtgatcag atttgcattg gttaccatgc aaacaactca acaaagcagg ttgacacgat 121 aatggagaaa aacgtcactg ttacacatgc ccaagacata ctggaaaaga cacacaacgg 181 gaagctctgc gatcttaatg gagtgaagcc cctgattcta aaggattgta gcgtagctgg 241 gtggctcctt ggaaatccaa tgtgcgacga gttcatcagg gtaccggaat ggtcttacat 301 cgtggagagg gctaacccag ccaacgacct ctgttaccca gggaccctca atgactatga 361 ggaactgaaa cacctattga gcagaataaa tcattttgag aaaactctga tcatccccag 421 gagttcttgg cccaatcatg aaacatcatt aggggtgagc gcagcatgtc cataccaggg 481 agcatcctca tttttcagaa atgtggtatg gctcatcaaa aagaacgatg catacccgac 541 aataaagata agctacaata ataccaatcg ggaagatctt ttgatactgt gggggattca 601 tcattccaac aatgcagcag agcagacaaa tctctataaa aacccagaca cttatgtttc 661 cgttgggaca tcaacattaa accagagatt ggtgccaaaa atagctacta gatcccaagt 721 aaacgggcag agtggaagaa tggatttctt ctggacaatt ttaaaaccga atgatgcaat 781 ccactttgag agtaatggaa atttcattgc tccagaatat gcatacaaaa ttgtcaagaa 841 aggggactca acaattatga aaagtgaaat ggagtatggc cactgcaaca ccaaatgtca 901 aactccaata ggggcgataa actctagcat gccattccac aatatacacc ctctcaccat 961 cggggaatgc cccaaatacg tgaagtcaaa caaattagtc cttgcgactg ggctcagaaa 1021 tagtcctcta agagaaagaa gaagaaaaag aggactattt ggagctatag cagggtttat 1081 agagggagga tggcagggaa tggtagacgg ttggtatggg tatcatcata gcaatgagca 1141 ggggagtggg tacgctgcag acaaagaatc aacccaaaag gcaatagatg gagttaccaa 1201 taaggtcaac tcaatcattg acaaaatgaa cactcaattt gaggccgttg gaagggaatt 1261 taataactta gaaaggagaa tagagaattt aaacaagaaa atggaagacg gattcctaga 1321 tgtctggact tataatgctg aacttttagt tctcatggaa aatgagagaa ctctagattt 1381 ccatgactca aatgtcaaga acctttacga caaagtccga ctacagctta gggataatgc 1441 aaaggagctg ggtaatggtt gtttcgagtt ctatcacaaa tgtgataacg aatgtatgga 1501 gagcgtaaga aatgggactt atgactaccc taagtattca gaagaagcaa tattaaaaag 1561 agaagaaata agcggagtga aattagaatc aataggaact taccagatac tgtcaattta 1621 ttcaacagtg gcgagttccc tagcactggc aatcatagtg gctggtctat ctttatggat 1681 gtgctctaat gggtcgttac aatgcagaat ttgcatctaa atttgtgagc tcagattgta 1741 atta
niman Posted December 24, 2015 Author Report Posted December 24, 2015 LOCUS KU201704 1744 bp cRNA linear VRL 22-DEC-2015 DEFINITION Influenza A virus (A/Northern pintail/Oregon/AH0003871/2015(H5N2)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION KU201704 VERSION KU201704.1 GI:965569210 KEYWORDS . SOURCE Influenza A virus (A/Northern pintail/Oregon/AH0003871/2015(H5N2)) ORGANISM Influenza A virus (A/Northern pintail/Oregon/AH0003871/2015(H5N2)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1744) AUTHORS Killian,M.L. TITLE Direct Submission JOURNAL Submitted (25-NOV-2015) Diagnostic Virology Laboratory, National Veterinary Services Laboratories (NVSL), USDA APHIS VS, 1920 Dayton Avenue, Ames, IA 50010, USA COMMENT GenBank Accession Numbers KU201701-KU201708 represent sequences from the 8 segments of Influenza A virus (A/Northern pintail/Oregon/AH0003871/2015(H5N2)). ##Assembly-Data-START## Assembly Method :: SeqMan NGen v. v4 Sequencing Technology :: Illumina; IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1744 /organism="Influenza A virus (A/Northern pintail/Oregon/AH0003871/2015(H5N2))" /mol_type="viral cRNA" /strain="A/Northern pintail/Oregon/AH0003871/2015" /serotype="H5N2" /isolation_source="oropharyngeal/cloacal swab pool from individual bird" /host="northern pintail; hunter harvest" /db_xref="taxon:1763704" /segment="4" /country="USA: Lane County, Oregon" /collection_date="12-Jan-2015" /note="NVSL 15-002191-3; EP1; Eurasian origin (EA-H5N8 clade 2.3.4.4)-North American reassortant" gene 17..1720 /gene="HA" CDS 17..1720 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="ALT19405.1" /db_xref="GI:965569211" /translation="MEKIVLLLAVISLVKSDQICIGYHANNSTKQVDTIMEKNVTVTH AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA NDLCYPGTLNDYEELKHLLSRINHFEKTLIIPRSSWPNHETSLGVSAACPYQGASSFF RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAAEQTNLYKNPDTYVSVGT STLNQRLVPKIATRSQVNGQSGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG DSTIMKSEMEYGHCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR NSPLRERRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPKYS EEAILKREEISGVKLESIGTYQILSIYSTVASSLALAIIVAGLSLWMCSNGSLQCRIC I" sig_peptide 17..64 /gene="HA" mat_peptide 65..1051 /gene="HA" /product="HA1" mat_peptide 1052..1717 /gene="HA" /product="HA2" ORIGIN 1 ggttcaatct gtcaaaatgg agaaaatagt gcttcttctt gcagtgatta gccttgttaa 61 aagtgatcag atttgcattg gttaccatgc aaacaactca acaaagcagg ttgacacgat 121 aatggagaaa aacgtcactg ttacacatgc ccaagacata ctggaaaaga cacacaacgg 181 gaagctctgc gatcttaatg gagtgaagcc cctgattcta aaggattgta gcgtagctgg 241 gtggctcctt ggaaatccaa tgtgcgacga gttcatcagg gtaccggaat ggtcttacat 301 cgtggagagg gctaacccag ccaacgacct ctgttaccca gggaccctca atgactatga 361 ggaactgaaa cacctattga gcagaataaa tcattttgag aaaactctga tcatccccag 421 gagttcttgg cccaatcatg aaacatcatt aggggtgagc gcagcatgtc cataccaggg 481 agcatcctca tttttcagaa atgtggtatg gctcatcaaa aagaacgatg catacccgac 541 aataaagata agctacaata ataccaatcg ggaagatctt ttgatactgt gggggattca 601 tcattccaac aatgcagcag agcagacaaa tctctataaa aacccagaca cttatgtttc 661 cgttgggaca tcaacattaa accagagatt ggtgccaaaa atagctacta gatcccaagt 721 aaacgggcag agtggaagaa tggatttctt ctggacaatt ttaaaaccga atgatgcaat 781 ccactttgag agtaatggaa atttcattgc tccagaatat gcatacaaaa ttgtcaagaa 841 aggggactca acaattatga aaagtgaaat ggagtatggc cactgcaaca ccaaatgtca 901 aactccaata ggggcgataa actctagcat gccattccac aatatacacc ccctcaccat 961 cggggaatgc cccaaatacg tgaagtcaaa caaattagtc cttgcgactg ggctcagaaa 1021 tagtcctcta agagaaagaa gaagaaaaag aggactattt ggagctatag cagggtttat 1081 agagggagga tggcagggaa tggtagacgg ttggtatggg tatcatcata gcaatgagca 1141 ggggagtggg tacgctgcag acaaagaatc aacccaaaag gcaatagatg gagttaccaa 1201 taaggtcaac tcaatcattg acaaaatgaa cactcaattt gaggccgttg gaagggaatt 1261 taataactta gaaaggagaa tagagaattt aaacaagaaa atggaagacg gattcctaga 1321 tgtctggact tataatgctg aacttttagt tctcatggaa aatgagagaa ctctggattt 1381 ccatgactca aatgtcaaga acctttacga caaagtccga ctacagctta gggataatgc 1441 aaaggagctg ggtaatggtt gtttcgagtt ctatcacaaa tgtgataacg aatgtatgga 1501 gagcgtaaga aatgggacgt atgactaccc taagtattca gaagaagcaa tattaaaaag 1561 agaagaaata agcggagtga aattagaatc aataggaact taccagatac tgtcaattta 1621 ttcaacagtg gcgagttccc tagcactggc aatcatagtg gctggtctat ctttatggat 1681 gtgctctaat gggtcgttac aatgcagaat ttgcatctaa atttgtgagc tcagattgta 1741 atta
niman Posted December 24, 2015 Author Report Posted December 24, 2015 LOCUS KU201712 1704 bp cRNA linear VRL 22-DEC-2015 DEFINITION Influenza A virus (A/mallard/Idaho/AH0007412/2015(H5N2)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION KU201712 VERSION KU201712.1 GI:965569171 KEYWORDS . SOURCE Influenza A virus (A/mallard/Idaho/AH0007412/2015(H5N2)) ORGANISM Influenza A virus (A/mallard/Idaho/AH0007412/2015(H5N2)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1704) AUTHORS Killian,M.L. TITLE Direct Submission JOURNAL Submitted (25-NOV-2015) Diagnostic Virology Laboratory, National Veterinary Services Laboratories (NVSL), USDA APHIS VS, 1920 Dayton Avenue, Ames, IA 50010, USA COMMENT GenBank Accession Numbers KU201709-KU201716 represent sequences from the 8 segments of Influenza A virus (A/mallard/Idaho/AH0007412/2015(H5N2)). ##Assembly-Data-START## Assembly Method :: SeqMan NGen v. v4 Sequencing Technology :: Illumina; IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1704 /organism="Influenza A virus (A/mallard/Idaho/AH0007412/2015(H5N2))" /mol_type="viral cRNA" /strain="A/mallard/Idaho/AH0007412/2015" /serotype="H5N2" /isolation_source="oropharyngeal/cloacal swab pool from individual bird" /host="mallard; hunter harvest" /db_xref="taxon:1763715" /segment="4" /country="USA: Canyon County, Idaho" /collection_date="17-Jan-2015" /note="NVSL 15-002893-3; EP1; Eurasian origin (EA-H5N8 clade 2.3.4.4)-North American reassortant" gene 1..1704 /gene="HA" CDS 1..1704 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="ALT19393.1" /db_xref="GI:965569172" /translation="MEKIVLLFAVISLVKSDQICIGYHANNSTKQVDTIMEKNVTVTH AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA NDLCYPGTLNDYEELKHLLSRINHFEKTLIIPRSSWPNHETSLGVSAACPYQGASSFF RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAAEQTNLYKNPDTYVSVGT STLNQRLVPKIATRSQVNGQSGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG DSTIMKSEMEYGHCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR NSPLRERRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE RTLDFHDSNVKNLYDKVRLQLKDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPKYS EEAILKREEISGVKLESIGTYQILSIYSTVASSLALAIIVAGLSLWMCSNGSLQCRIC I" sig_peptide 1..48 /gene="HA" mat_peptide 49..1035 /gene="HA" /product="HA1" mat_peptide 1036..1701 /gene="HA" /product="HA2" ORIGIN 1 atggagaaaa tagtgcttct ttttgcagtg attagccttg ttaaaagtga tcagatttgc 61 attggttacc atgcaaacaa ctcaacaaag caggttgaca cgataatgga gaaaaacgtc 121 actgttacac atgcccaaga catactggaa aagacacaca acgggaagct ctgcgatctt 181 aatggagtga agcccctgat tctaaaggat tgtagcgtag ctgggtggct ccttggaaat 241 ccaatgtgcg acgagttcat cagggtaccg gaatggtctt acatcgtgga gagggctaac 301 ccagccaacg acctctgtta cccagggacc ctcaatgact atgaggaact gaaacaccta 361 ttgagcagaa taaatcattt tgagaaaact ctgatcatcc ccaggagttc ttggcccaat 421 catgaaacat cattaggggt gagcgcagca tgtccatacc agggagcatc ctcatttttc 481 agaaatgtgg tatggctcat caaaaagaac gatgcatacc cgacaataaa gataagctac 541 aataatacca atcgggaaga tcttttgata ctgtggggga ttcatcattc caacaatgca 601 gcagagcaga caaatctcta taaaaaccca gacacttatg tctccgttgg gacatcaaca 661 ttaaaccaga gattggtgcc aaaaatagct actagatccc aagtaaacgg gcagagtgga 721 agaatggatt tcttctggac aattttaaaa ccgaatgatg caatccactt tgagagtaat 781 ggaaatttca ttgctccaga atatgcatac aaaattgtca agaaagggga ctcaacaatt 841 atgaaaagtg aaatggagta tggccactgc aacaccaaat gtcaaactcc aataggggcg 901 ataaactcta gcatgccatt ccacaatata caccctctca ccatcgggga atgccccaaa 961 tacgtgaagt caaacaaatt agtccttgcg actgggctca gaaatagtcc tctaagagaa 1021 agaagaagaa aaagaggact atttggagct atagcagggt ttatagaggg aggatggcag 1081 ggaatggtag acggttggta tgggtatcac catagcaatg agcaggggag tgggtacgct 1141 gcagacaaag aatcaaccca aaaggcaata gatggagtta ccaataaggt caactcaatc 1201 attgacaaaa tgaacactca atttgaggcc gttggaaggg aatttaataa cttagaaagg 1261 agaatagaga atttaaacaa gaaaatggaa gacggattcc tagatgtctg gacttataat 1321 gctgaacttt tagttctcat ggaaaatgag agaactctag atttccatga ctcaaatgtc 1381 aagaaccttt acgacaaagt ccgactacag cttaaggata atgcaaagga gctgggtaat 1441 ggttgtttcg agttctatca caaatgtgat aacgaatgta tggagagcgt aagaaatggg 1501 acgtatgact accctaagta ttcagaagaa gcaatattaa aaagagaaga aataagcgga 1561 gtgaaattag aatcaatagg aacttaccag atactgtcaa tttattcaac agtggcgagt 1621 tccctagcac tggcaatcat agtggctggt ctatctttat ggatgtgctc taatgggtcg 1681 ttacaatgca gaatttgcat ctaa
niman Posted December 24, 2015 Author Report Posted December 24, 2015 LOCUS KU201720 1744 bp cRNA linear VRL 22-DEC-2015 DEFINITION Influenza A virus (A/mallard/Idaho/AH0007413/2015(H5N2)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION KU201720 VERSION KU201720.1 GI:965569138 KEYWORDS . SOURCE Influenza A virus (A/mallard/Idaho/AH0007413/2015(H5N2)) ORGANISM Influenza A virus (A/mallard/Idaho/AH0007413/2015(H5N2)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1744) AUTHORS Killian,M.L. TITLE Direct Submission JOURNAL Submitted (25-NOV-2015) Diagnostic Virology Laboratory, National Veterinary Services Laboratories (NVSL), USDA APHIS VS, 1920 Dayton Avenue, Ames, IA 50010, USA COMMENT GenBank Accession Numbers KU201717-KU201724 represent sequences from the 8 segments of Influenza A virus (A/mallard/Idaho/AH0007413/2015(H5N2)). ##Assembly-Data-START## Assembly Method :: SeqMan NGen v. v4 Sequencing Technology :: Illumina; IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1744 /organism="Influenza A virus (A/mallard/Idaho/AH0007413/2015(H5N2))" /mol_type="viral cRNA" /strain="A/mallard/Idaho/AH0007413/2015" /serotype="H5N2" /isolation_source="oropharyngeal/cloacal swab pool from individual bird" /host="mallard; hunter harvest" /db_xref="taxon:1763716" /segment="4" /country="USA: Canyon County, Idaho" /collection_date="17-Jan-2015" /note="NVSL 15-002893-4; EP1; Eurasian origin (EA-H5N8 clade 2.3.4.4)-North American reassortant" gene 17..1720 /gene="HA" CDS 17..1720 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="ALT19381.1" /db_xref="GI:965569139" /translation="MEKIVLLFAVISLVKSDQICIGYHANNSTKQVDTIMEKNVTVTH AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA NDLCYPGTLNDYEELKHLLSRINHFEKTLIIPRSSWPNHETSLGVSAACPYQGASSFF RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAAEQTNLYKNPDTYVSVGT STLNQRLVPKIATRSQVNGQSGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG DSTIMKSEMEYGHCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR NSPLRERRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE RTLDFHDSNVKNLYDKVRLQLKDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPKYS EEAILKREEISGVKLESIGTYQILSIYSTVASSLALAIIVAGLSLWMCSNGSLQCRIC I" sig_peptide 17..64 /gene="HA" mat_peptide 65..1051 /gene="HA" /product="HA1" mat_peptide 1052..1717 /gene="HA" /product="HA2" ORIGIN 1 ggttcagggt gacaaaatgg agaaaatagt gcttcttttt gcagtgatta gccttgttaa 61 aagtgatcag atttgcattg gttaccatgc aaacaactca acaaagcagg ttgacacgat 121 aatggagaaa aacgtcactg ttacacatgc ccaagacata ctggaaaaga cacacaacgg 181 gaagctctgc gatcttaatg gagtgaagcc cctgattcta aaggattgta gcgtagctgg 241 gtggctcctt ggaaatccaa tgtgcgacga gttcatcagg gtaccggaat ggtcttacat 301 cgtggagagg gctaacccag ccaacgacct ctgttaccca gggaccctca atgactatga 361 ggaactgaaa cacctattga gcagaataaa tcattttgag aaaactctga tcatccccag 421 gagttcttgg cccaatcatg aaacatcatt aggggtgagc gcagcatgtc cataccaggg 481 agcatcctca tttttcagaa atgtggtatg gctcatcaaa aagaacgatg catacccgac 541 aataaagata agctacaata ataccaatcg ggaagatctt ttgatactgt gggggattca 601 tcattccaac aatgcagcag agcagacaaa tctctataaa aacccagaca cttatgtctc 661 cgttgggaca tcaacattaa accagagatt ggtgccaaaa atagctacta gatcccaagt 721 aaacgggcag agtggaagaa tggatttctt ctggacaatt ttaaaaccga atgatgcaat 781 ccactttgag agtaatggaa atttcattgc tccagaatat gcatacaaaa ttgtcaagaa 841 aggggactca acaattatga aaagtgaaat ggagtatggc cactgcaaca ccaaatgtca 901 aactccaata ggggcgataa actctagcat gccattccac aatatacacc ctctcaccat 961 cggggaatgc cccaaatacg tgaagtcaaa caaattagtc cttgcgactg ggctcagaaa 1021 tagtcctcta agagaaagaa gaagaaaaag aggactattt ggagctatag cagggtttat 1081 agagggagga tggcagggaa tggtagacgg ttggtatggg tatcaccata gcaatgagca 1141 ggggagtggg tacgctgcag acaaagaatc aacccaaaag gcaatagatg gagttaccaa 1201 taaggtcaac tcaatcattg acaaaatgaa cactcaattt gaggccgttg gaagggaatt 1261 taataactta gaaaggagaa tagagaattt aaacaagaaa atggaagacg gattcctaga 1321 tgtctggact tataatgctg aacttttagt tctcatggaa aatgagagaa ctctagattt 1381 ccatgactca aatgtcaaga acctttacga caaagtccga ctacagctta aggataatgc 1441 aaaggagctg ggtaatggtt gtttcgagtt ctatcacaaa tgtgataacg aatgtatgga 1501 gagcgtaaga aatgggacgt atgactaccc taagtattca gaagaagcaa tattaaaaag 1561 agaagaaata agcggagtga aattagaatc aataggaact taccagatac tgtcaattta 1621 ttcaacagtg gcgagttccc tagcactggc aatcatagtg gctggtctat ctttatggat 1681 gtgctctaat gggtcgttac aatgcagaat ttgcatctaa atttgtgagc tcagattgta 1741 atta
niman Posted December 24, 2015 Author Report Posted December 24, 2015 LOCUS KU201728 1744 bp cRNA linear VRL 22-DEC-2015 DEFINITION Influenza A virus (A/American green-winged teal/Idaho/AH0011899/2015(H5N2)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION KU201728 VERSION KU201728.1 GI:965569100 KEYWORDS . SOURCE Influenza A virus (A/American green-winged teal/Idaho/AH0011899/2015(H5N2)) ORGANISM Influenza A virus (A/American green-winged teal/Idaho/AH0011899/2015(H5N2)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1744) AUTHORS Killian,M.L. TITLE Direct Submission JOURNAL Submitted (25-NOV-2015) Diagnostic Virology Laboratory, National Veterinary Services Laboratories (NVSL), USDA APHIS VS, 1920 Dayton Avenue, Ames, IA 50010, USA COMMENT GenBank Accession Numbers KU201725-KU201732 represent sequences from the 8 segments of Influenza A virus (A/American green-winged teal/Idaho/AH0011899/2015(H5N2)). ##Assembly-Data-START## Assembly Method :: SeqMan NGen v. v4 Sequencing Technology :: Illumina; IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1744 /organism="Influenza A virus (A/American green-winged teal/Idaho/AH0011899/2015(H5N2))" /mol_type="viral cRNA" /strain="A/American green-winged teal/Idaho/AH0011899/2015" /serotype="H5N2" /isolation_source="oropharyngeal/cloacal swab pool from individual bird" /host="American green-winged teal; hunter harvest" /db_xref="taxon:1763692" /segment="4" /country="USA: Ada County, Idaho" /collection_date="18-Jan-2015" /note="NVSL 15-002896-4; EP1; Eurasian origin (EA-H5N8 clade 2.3.4.4)-North American reassortant" gene 17..1720 /gene="HA" CDS 17..1720 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="ALT19369.1" /db_xref="GI:965569101" /translation="MEKIVLLFAVISLVKSDQICIGYHANNSTKQVDTIMEKNVTVTH AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA NDLCYPGTLNDYEELKHLLSRINHFEKTLIIPRSSWPNHETSLGVSAACPYQGASSFF RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAAEQTNLYKNPDTYVSVGT STLNQRLVPKIATRSQVNGQSGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG DSTIMKSEMEYGHCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR NSPLRERRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPKYS EEAILKREEISGVKLESIGTYQILSIYSTVASSLALAIIVAGLSLWMCSNGSLQCRIC I" sig_peptide 17..64 /gene="HA" mat_peptide 65..1051 /gene="HA" /product="HA1" mat_peptide 1052..1717 /gene="HA" /product="HA2" ORIGIN 1 ggttcaaggt gacaaaatgg agaaaatagt gcttcttttt gcagtgatta gccttgttaa 61 aagtgatcag atttgcattg gttaccatgc aaacaactca acaaagcagg ttgacacgat 121 aatggagaaa aacgtcactg ttacacatgc ccaagacata ctggaaaaga cacacaacgg 181 gaagctctgc gatcttaatg gagtgaagcc cctgattcta aaggattgta gcgtagctgg 241 gtggctcctt ggaaatccaa tgtgcgacga gttcatcagg gtaccggaat ggtcttacat 301 cgtggagagg gctaacccag ccaacgacct ctgttaccca gggaccctca atgactatga 361 ggaactgaaa cacctattga gcagaataaa tcattttgag aaaactctga tcatccccag 421 gagttcttgg cccaatcatg aaacatcatt aggggtgagc gcagcatgtc cataccaggg 481 agcatcctca tttttcagaa atgtggtatg gctcatcaaa aagaacgatg catacccgac 541 aataaagata agctacaata ataccaatcg ggaagatctt ttgatactgt gggggattca 601 tcattccaac aatgcagcag agcagacaaa tctctataaa aacccagaca cttatgtttc 661 cgttgggaca tcaacattaa accagagatt ggtgccaaaa atagctacta gatcccaagt 721 aaacgggcag agtggaagaa tggatttctt ctggacaatt ttaaaaccga atgatgcaat 781 ccactttgag agtaatggaa atttcattgc tccagaatat gcatacaaaa ttgtcaagaa 841 aggggactca acaattatga aaagtgaaat ggagtatggc cactgcaaca ccaaatgtca 901 aactccaata ggggcgataa actctagcat gccattccac aatatacacc ctctcaccat 961 cggggaatgc cccaaatacg tgaagtcaaa caaattagtc cttgcgactg ggctcagaaa 1021 tagtcctcta agagaaagaa gaagaaaaag aggactattt ggagctatag cagggtttat 1081 agagggagga tggcagggaa tggtagacgg ttggtatggg tatcatcata gcaatgagca 1141 ggggagtggg tacgctgcag acaaagaatc aacccaaaag gcaatagatg gagttaccaa 1201 taaggtcaac tcaatcattg acaaaatgaa cactcaattt gaggccgttg gaagggaatt 1261 taataactta gaaaggagaa tagagaattt aaacaagaaa atggaagacg gattcctaga 1321 tgtctggact tataatgctg aacttttagt tctcatggaa aatgagagaa ctctagattt 1381 ccatgactca aatgtcaaga acctttacga caaagtccga ctacagctta gggataatgc 1441 aaaggagctg ggtaatggtt gtttcgagtt ctatcacaaa tgtgataacg aatgtatgga 1501 gagcgtaaga aatgggacgt atgactaccc taagtattca gaagaagcaa tattaaaaag 1561 agaagaaata agcggagtga aattagaatc aataggaact taccagatac tgtcaattta 1621 ttcaacagtg gcgagttccc tagcactggc aatcatagtg gctggtctat ctttatggat 1681 gtgctctaat gggtcgttac aatgcagaat ttgcatctaa atttgtgagc tcagattgta 1741 atta
niman Posted December 24, 2015 Author Report Posted December 24, 2015 LOCUS KU201736 1704 bp cRNA linear VRL 22-DEC-2015 DEFINITION Influenza A virus (A/American green-winged teal/Oregon/AH0012403/2015(H5N2)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION KU201736 VERSION KU201736.1 GI:965569060 KEYWORDS . SOURCE Influenza A virus (A/American green-winged teal/Oregon/AH0012403/2015(H5N2)) ORGANISM Influenza A virus (A/American green-winged teal/Oregon/AH0012403/2015(H5N2)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1704) AUTHORS Killian,M.L. TITLE Direct Submission JOURNAL Submitted (25-NOV-2015) Diagnostic Virology Laboratory, National Veterinary Services Laboratories (NVSL), USDA APHIS VS, 1920 Dayton Avenue, Ames, IA 50010, USA COMMENT GenBank Accession Numbers KU201733-KU201740 represent sequences from the 8 segments of Influenza A virus (A/American green-winged teal/Oregon/AH0012403/2015(H5N2)). ##Assembly-Data-START## Assembly Method :: SeqMan NGen v. v4 Sequencing Technology :: Illumina; IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1704 /organism="Influenza A virus (A/American green-winged teal/Oregon/AH0012403/2015(H5N2))" /mol_type="viral cRNA" /strain="A/American green-winged teal/Oregon/AH0012403/2015" /serotype="H5N2" /isolation_source="oropharyngeal/cloacal swab pool from individual bird" /host="American green-winged teal; hunter harvest" /db_xref="taxon:1763693" /segment="4" /country="USA: Lane County, Oregon" /collection_date="14-Jan-2015" /note="NVSL 15-002956-9; EP1; Eurasian origin (EA-H5N8 clade 2.3.4.4)-North American reassortant" gene 1..1704 /gene="HA" CDS 1..1704 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="ALT19357.1" /db_xref="GI:965569061" /translation="MEKIVLLFAVISLVKSDQICIGYHANNSTKQVDTIMEKNVTVTH AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA NDLCYPGTLNDYEELKHLLSRINHFEKTLIIPRSSWPNHETSLGVSAACPYQGASSFF RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAAEQTNLYKNPDTYVSVGT STLNQRLVPKIATRSQVNGQSGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG DSTIMKSEMEYGHCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR NSPLRERRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPKYS EEAILKREEISGVKLESIGTYQILSIYSTVASSLALAIIVAGLSLWMCSNGSLQCRIC I" sig_peptide 1..48 /gene="HA" mat_peptide 49..1035 /gene="HA" /product="HA1" mat_peptide 1036..1701 /gene="HA" /product="HA2" ORIGIN 1 atggagaaaa tagtgcttct ttttgcagtg attagccttg ttaaaagtga tcagatttgc 61 attggttacc atgcaaacaa ctcaacaaag caggttgaca cgataatgga gaaaaacgtc 121 actgttacac atgcccaaga catactggaa aagacacaca acgggaagct ctgcgatctt 181 aatggagtga agcccctgat tctaaaggat tgtagcgtag ctgggtggct ccttggaaat 241 ccaatgtgcg acgagttcat cagggtaccg gaatggtctt acatcgtgga gagggctaac 301 ccagccaacg acctctgtta cccagggacc ctcaatgact atgaggaact gaaacaccta 361 ttgagcagaa taaatcattt tgagaaaact ctgatcatcc ccaggagttc ttggcccaat 421 catgaaacat cattaggggt gagcgcagca tgtccatacc agggagcatc ctcatttttc 481 agaaatgtgg tatggctcat caaaaagaac gatgcatacc cgacaataaa gataagctac 541 aataatacca atcgggaaga tcttttgata ctgtggggga ttcatcattc caacaatgca 601 gcagagcaga caaatctcta taaaaaccca gacacttatg tttccgttgg gacatcaaca 661 ttaaaccaga gattggtgcc aaaaatagct actagatccc aagtaaacgg gcagagtgga 721 agaatggatt tcttctggac aattttaaaa ccgaatgatg caatccactt tgagagtaat 781 ggaaatttca ttgctccaga atatgcatac aaaattgtca agaaagggga ctcaacaatt 841 atgaaaagtg aaatggagta tggccactgc aacaccaaat gtcaaactcc aataggggcg 901 ataaactcta gcatgccatt ccacaatata caccctctca ccatcgggga atgccccaaa 961 tacgtgaagt caaacaaatt agtccttgcg actgggctca gaaatagtcc tctaagagaa 1021 agaagaagaa aaagaggact atttggagct atagcagggt ttatagaggg aggatggcag 1081 ggaatggtag acggttggta tgggtatcat catagcaatg agcaggggag tgggtacgct 1141 gcagacaaag aatcaaccca aaaggcaata gatggagtta ccaataaggt caactcaatc 1201 attgacaaaa tgaacactca atttgaggcc gttggaaggg aatttaataa cttagaaagg 1261 agaatagaga atttaaacaa gaaaatggaa gacggattcc tagatgtctg gacttataat 1321 gctgaacttt tagttctcat ggaaaatgag agaactctag atttccatga ctcaaatgtc 1381 aagaaccttt acgacaaagt ccgactacag cttagggata atgcaaagga gctgggtaat 1441 ggttgtttcg agttctatca caaatgtgat aacgaatgta tggagagcgt aagaaatggg 1501 acgtatgact accctaagta ttcagaagaa gcaatattaa aaagagaaga aataagcgga 1561 gtgaaattag aatcaatagg aacttaccag atactgtcaa tttattcaac agtggcgagt 1621 tccctagcac tggcaatcat agtggctggt ctatctttat ggatgtgctc taatgggtcg 1681 ttacaatgca gaatttgcat ctaa
niman Posted December 24, 2015 Author Report Posted December 24, 2015 LOCUS KU201744 1704 bp cRNA linear VRL 22-DEC-2015 DEFINITION Influenza A virus (A/Canada goose/Oregon/AH0012452/2015(H5N8)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION KU201744 VERSION KU201744.1 GI:965569024 KEYWORDS . SOURCE Influenza A virus (A/Canada goose/Oregon/AH0012452/2015(H5N8)) ORGANISM Influenza A virus (A/Canada goose/Oregon/AH0012452/2015(H5N8)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1704) AUTHORS Killian,M.L. TITLE Direct Submission JOURNAL Submitted (25-NOV-2015) Diagnostic Virology Laboratory, National Veterinary Services Laboratories (NVSL), USDA APHIS VS, 1920 Dayton Avenue, Ames, IA 50010, USA COMMENT GenBank Accession Numbers KU201741-KU201748 represent sequences from the 8 segments of Influenza A virus (A/Canada goose/Oregon/AH0012452/2015(H5N8)). ##Assembly-Data-START## Assembly Method :: SeqMan NGen v. v4 Sequencing Technology :: Illumina; IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1704 /organism="Influenza A virus (A/Canada goose/Oregon/AH0012452/2015(H5N8))" /mol_type="viral cRNA" /strain="A/Canada goose/Oregon/AH0012452/2015" /serotype="H5N8" /isolation_source="oropharyngeal/cloacal swab pool from individual bird" /host="Canada goose; hunter harvest" /db_xref="taxon:1763701" /segment="4" /country="USA: Klamath County, Oregon" /collection_date="18-Jan-2015" /note="NVSL 15-002957-4; EP1; Eurasian origin (EA-H5N8 clade 2.3.4.4)-North American reassortant" gene 1..1704 /gene="HA" CDS 1..1704 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="ALT19345.1" /db_xref="GI:965569025" /translation="MEKIVLLLAVISLVKSDQICIGYHANNSTKQVDTIMEKNVTVTH AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA NDLCYPGTLNDYEELKHLLSRINHFEKTLIIPRSSWPNHETSLGVSAACPYQGASSFF RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAAEQTNLYKNPDTYVSVGT STLNQRLVPKIATRSRVNGQSGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIIKKG DSTIMKSEMEYGHCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR NSPLRERRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPKYS EEAILKREEISGVKLESIGTYQILSIYSTVASSLALAIIVAGLSLWMCSNGSLQCRIC I" sig_peptide 1..48 /gene="HA" mat_peptide 49..1035 /gene="HA" /product="HA1" mat_peptide 1036..1701 /gene="HA" /product="HA2" ORIGIN 1 atggagaaaa tagtgcttct tcttgcagtg attagccttg ttaaaagtga tcagatttgc 61 attggttacc atgcaaacaa ctcaacaaag caggttgaca cgataatgga gaaaaacgtc 121 actgttacac atgcccaaga catactggaa aagacacaca acgggaagct ctgcgatctt 181 aatggagtga agcccctgat tctaaaggat tgtagcgtag ctgggtggct ccttggaaat 241 ccaatgtgcg acgagtttat cagggtaccg gaatggtctt acatcgtgga gagggctaac 301 ccagccaacg acctctgtta cccagggacc ctcaatgact atgaggaact gaaacaccta 361 ttgagcagaa taaatcattt tgagaaaact ctgatcatcc ccaggagttc ttggcccaat 421 catgaaacat cattaggggt gagcgcagca tgtccatacc agggagcatc ctcatttttc 481 agaaatgtgg tatggctcat caaaaagaac gatgcatacc cgacaataaa gataagctac 541 aataatacca atcgggaaga tcttttgata ctgtggggga ttcatcattc caacaatgca 601 gcagagcaga caaatctcta taaaaaccca gacacttatg tttccgttgg gacatcaaca 661 ttaaaccaga gattggtgcc aaaaatagct actagatccc gagtaaacgg gcagagtgga 721 agaatggatt tcttctggac aattttaaaa ccgaatgatg caatccactt tgagagtaat 781 ggaaatttca ttgctccaga atatgcatac aaaattatca agaaagggga ctcaacaatt 841 atgaaaagtg aaatggagta tggccactgc aacaccaaat gtcaaactcc aataggggct 901 ataaactcta gcatgccatt ccacaatata caccctctca ccatcgggga atgccccaaa 961 tacgtgaagt caaacaaatt agtccttgcg actgggctca gaaatagtcc tctaagagaa 1021 agaagaagaa aaagaggact atttggagct atagcagggt ttatagaggg aggatggcag 1081 ggaatggtag acggttggta tgggtatcat catagcaatg agcaggggag tgggtacgct 1141 gcagacaaag aatccaccca aaaggcaata gatggagtta ccaataaggt caactcaatc 1201 attgacaaaa tgaacactca atttgaggcc gttggaaggg aatttaataa cttagaaagg 1261 agaatagaga atttaaacaa gaaaatggaa gacggattcc tagatgtctg gacttataat 1321 gctgaacttt tagttctcat ggaaaatgag agaactctag atttccatga ctcaaatgtc 1381 aagaaccttt acgacaaagt ccgactacag cttagggata atgcaaagga gctgggtaat 1441 ggttgtttcg agttctatca caaatgtgat aacgaatgta tggagagcgt aagaaatggg 1501 acgtatgact accctaagta ttcagaagaa gcaatattaa aaagagaaga aataagcgga 1561 gtgaaattag aatcaatagg aacttaccag atactgtcaa tttattcaac agtggcgagt 1621 tccctagcac tggcaatcat agtggctggt ttatctttat ggatgtgctc taatgggtcg 1681 ttacaatgca gaatttgcat ctaa
niman Posted December 24, 2015 Author Report Posted December 24, 2015 LOCUS KU201752 1704 bp cRNA linear VRL 22-DEC-2015 DEFINITION Influenza A virus (A/American wigeon/Oregon/AH0012525/2015(H5N8)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION KU201752 VERSION KU201752.1 GI:965568983 KEYWORDS . SOURCE Influenza A virus (A/American wigeon/Oregon/AH0012525/2015(H5N8)) ORGANISM Influenza A virus (A/American wigeon/Oregon/AH0012525/2015(H5N8)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1704) AUTHORS Killian,M.L. TITLE Direct Submission JOURNAL Submitted (25-NOV-2015) Diagnostic Virology Laboratory, National Veterinary Services Laboratories (NVSL), USDA APHIS VS, 1920 Dayton Avenue, Ames, IA 50010, USA COMMENT GenBank Accession Numbers KU201749-KU201756 represent sequences from the 8 segments of Influenza A virus (A/American wigeon/Oregon/AH0012525/2015(H5N8)). ##Assembly-Data-START## Assembly Method :: SeqMan NGen v. v4 Sequencing Technology :: Illumina; IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1704 /organism="Influenza A virus (A/American wigeon/Oregon/AH0012525/2015(H5N8))" /mol_type="viral cRNA" /strain="A/American wigeon/Oregon/AH0012525/2015" /serotype="H5N8" /isolation_source="oropharyngeal/cloacal swab pool from individual bird" /host="American wigeon; hunter harvest" /db_xref="taxon:1763694" /segment="4" /country="USA: Klamath County, Oregon" /collection_date="18-Jan-2015" /note="NVSL 15-002957-11; EP1; Eurasian origin (EA-H5N8 clade 2.3.4.4)-North American reassortant" gene 1..1704 /gene="HA" CDS 1..1704 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="ALT19333.1" /db_xref="GI:965568984" /translation="MEKIVLLLAVISLVKSDQICIGYHANNSTKQVDTIMEKNVTVTH AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA NDLCYPGTLNDYEELKHLLSRINHFEKTLIIPRSSWPNHETSLGVSAACPYQGASSFF RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAAEQTNLYKNPDTYVSVGT STLNQRLVPKIATRSQVNGQSGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG DSTIMKSEMEYGHCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR NSPLRERRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECIESVRNGTYDYPKYS EEAILKREEISGVKLESIGTYQILSIYSTVASSLALAIIVAGLSLWMCSNGSLQCRIC I" sig_peptide 1..48 /gene="HA" mat_peptide 49..1035 /gene="HA" /product="HA1" mat_peptide 1036..1701 /gene="HA" /product="HA2" ORIGIN 1 atggagaaaa tagtgcttct tcttgcagtg attagccttg ttaaaagtga tcagatttgc 61 attggttacc atgcaaacaa ctcaacaaag caggttgaca cgataatgga gaaaaacgtc 121 actgttacac atgcccaaga catactggaa aagacacaca acgggaagct ctgcgatctt 181 aatggagtga agcccctgat tctaaaggat tgtagcgtag ctgggtggct ccttggaaat 241 ccaatgtgcg acgagtttat cagggtaccg gaatggtctt acatcgtgga gagggctaac 301 ccagccaacg acctctgtta cccagggacc ctcaatgact atgaggaact gaaacaccta 361 ttgagcagaa taaatcattt tgagaaaact ctgatcatcc ccaggagttc ttggcccaat 421 catgaaacat cattaggggt gagcgcagca tgtccatacc agggagcatc ctcatttttc 481 agaaatgtgg tatggctcat caaaaagaac gatgcatacc cgacaataaa gataagctac 541 aataatacca atcgggaaga tcttttgata ctgtggggga ttcatcattc caacaatgca 601 gcagagcaga caaatctcta taaaaaccca gacacttatg tttccgttgg gacatcaaca 661 ttaaaccaga gattggtgcc aaaaatagct actagatccc aagtaaacgg gcagagtgga 721 agaatggatt tcttctggac aattttaaaa ccgaatgatg caatccactt tgagagtaat 781 ggaaatttca ttgctccaga atatgcatac aaaattgtca agaaagggga ttcaacaatt 841 atgaaaagtg aaatggagta tggccactgc aacaccaaat gtcaaactcc aataggggct 901 ataaactcta gcatgccatt ccacaatata caccctctca ccatcgggga atgccccaaa 961 tacgtgaagt caaacaaatt agtccttgcg actgggctca gaaatagtcc tctaagagaa 1021 agaagaagaa aaagaggact atttggagct atagcagggt ttatagaggg aggatggcag 1081 ggaatggtag acggttggta tgggtatcat catagcaatg agcaggggag tgggtacgct 1141 gcagacaaag aatccaccca aaaggcaata gatggagtta ccaataaggt caactcaatc 1201 attgacaaaa tgaacactca atttgaggcc gttggaaggg aatttaataa cttagaaagg 1261 agaatagaga atttaaacaa gaaaatggaa gacggattcc tagatgtctg gacttataat 1321 gctgaacttt tagttctcat ggaaaatgag agaactctag atttccatga ctcaaatgtc 1381 aagaaccttt acgacaaagt ccgactacag cttagggata atgcaaagga gctgggtaat 1441 ggttgtttcg agttctatca caaatgtgat aacgaatgta tagagagcgt aagaaatggg 1501 acgtatgact accctaagta ttcagaagaa gcaatattaa aaagagaaga aataagcgga 1561 gtgaaattag aatcaatagg aacttaccag atactgtcaa tttattcaac agtggcgagt 1621 tccctagcac tggcaatcat agtggctggt ttatctttat ggatgtgctc taatgggtcg 1681 ttacaatgca gaatttgcat ctaa
niman Posted December 24, 2015 Author Report Posted December 24, 2015 LOCUS KU201760 1704 bp cRNA linear VRL 22-DEC-2015 DEFINITION Influenza A virus (A/mallard/Nevada/AH0006855/2015(H5N8)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION KU201760 VERSION KU201760.1 GI:965568943 KEYWORDS . SOURCE Influenza A virus (A/mallard/Nevada/AH0006855/2015(H5N8)) ORGANISM Influenza A virus (A/mallard/Nevada/AH0006855/2015(H5N8)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1704) AUTHORS Killian,M.L. TITLE Direct Submission JOURNAL Submitted (25-NOV-2015) Diagnostic Virology Laboratory, National Veterinary Services Laboratories (NVSL), USDA APHIS VS, 1920 Dayton Avenue, Ames, IA 50010, USA COMMENT GenBank Accession Numbers KU201757-KU201764 represent sequences from the 8 segments of Influenza A virus (A/mallard/Nevada/AH0006855/2015(H5N8)). ##Assembly-Data-START## Assembly Method :: SeqMan NGen v. v4 Sequencing Technology :: Illumina; IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1704 /organism="Influenza A virus (A/mallard/Nevada/AH0006855/2015(H5N8))" /mol_type="viral cRNA" /strain="A/mallard/Nevada/AH0006855/2015" /serotype="H5N8" /isolation_source="oropharyngeal/cloacal swab pool from individual bird" /host="mallard; hunter harvest" /db_xref="taxon:1763718" /segment="4" /country="USA: Churchill County, Nevada" /collection_date="23-Jan-2015" /note="NVSL 15-003133-3; EP1; Eurasian origin H5N8 clade 2.3.4.4" gene 1..1704 /gene="HA" CDS 1..1704 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="ALT19322.1" /db_xref="GI:965568944" /translation="MEKIVLLLAVISLVKSDQICIGYHANNSTKQVDTIMEKNVTVTH AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA NDLCYPGTLNDYEELKHLLSRINHFEKTLIIPRSSWPNHETSLGVSAACPYQGASSFF RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAAEQTNLYKNPDTYVSVGT STLNQRLVPKIATRSQVNGQSGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG DSTIMKSEMEYGHCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR NSPLRERRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPKYS EEAILKREEISGVKLESIGTYQILSIYSTVASSLALAIIVAGLSLWMCSNGSLQCRIC I" sig_peptide 1..48 /gene="HA" mat_peptide 49..1035 /gene="HA" /product="HA1" mat_peptide 1036..1701 /gene="HA" /product="HA2" ORIGIN 1 atggagaaaa tagtgcttct tcttgcagtg attagccttg ttaaaagtga tcagatttgc 61 attggttacc atgcaaacaa ctcaacaaag caggttgaca cgataatgga gaaaaacgtc 121 actgttacac atgcccaaga catactggaa aagacacaca acgggaagct ctgcgatctt 181 aatggagtga agcccctgat tctaaaggat tgtagcgtag ctgggtggct ccttggaaat 241 ccaatgtgcg acgagttcat cagggtaccg gaatggtctt acatcgtgga gagggctaat 301 ccagccaacg acctatgtta cccagggacc ctcaatgact atgaggaact gaaacaccta 361 ttgagcagaa taaatcattt tgagaaaact ctgatcatcc ccaggagttc ttggcccaat 421 catgaaacat cattaggggt gagcgcagca tgtccatacc agggagcatc ctcatttttc 481 agaaatgtgg tatggctcat caaaaagaac gatgcatacc cgacaataaa gataagctac 541 aataatacca atcgggaaga tcttttgata ctgtggggga ttcatcattc caacaatgca 601 gcagagcaga caaatctcta taaaaaccca gacacttatg tttccgttgg gacatcaaca 661 ttaaaccaga gattggtgcc aaaaatagct actagatccc aagtaaacgg gcagagtgga 721 agaatggatt tcttctggac aattttaaaa ccgaatgatg caatccactt tgagagtaat 781 ggaaatttca ttgctccaga atatgcatac aaaattgtca agaaagggga ctcaacaatt 841 atgaaaagtg aaatggagta tggccactgc aacaccaaat gtcaaactcc aataggggcg 901 ataaactcta gcatgccatt ccacaatata caccctctca ccatcgggga atgccccaaa 961 tacgtgaagt caaacaaatt agtccttgcg actgggctca gaaatagtcc tctaagagaa 1021 agaagaagaa aaagaggact atttggagct atagcagggt ttatagaggg aggatggcag 1081 ggaatggtag acggttggta tgggtatcat catagcaatg agcaggggag tgggtacgct 1141 gcagacaaag aatccaccca aaaggcaata gatggagtta ccaataaggt caactcaatc 1201 attgacaaaa tgaacactca atttgaggcc gttggaaggg aatttaataa cttagaaagg 1261 agaatagaga atttaaacaa gaaaatggaa gacggattcc tagatgtctg gacttataat 1321 gctgaacttt tagttctcat ggaaaatgag agaactctag attttcatga ctcaaatgtc 1381 aagaaccttt acgacaaagt ccgactacag cttagggata atgcaaagga gctgggcaat 1441 ggttgtttcg agttctatca caaatgtgat aacgaatgta tggagagcgt aagaaatggg 1501 acgtatgact accctaagta ttcagaagaa gcaatattaa aaagagaaga aataagcgga 1561 gtgaaattag aatcaatagg aacttaccag atactgtcaa tttattcaac agtggcgagt 1621 tccctagcac tggcaatcat agtggctggt ctatctttat ggatgtgctc taatgggtcg 1681 ttacaatgca gaatttgcat ctaa
niman Posted December 24, 2015 Author Report Posted December 24, 2015 LOCUS KU201768 1704 bp cRNA linear VRL 22-DEC-2015 DEFINITION Influenza A virus (A/mallard/Idaho/AH0005954/2014(H5N8)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION KU201768 VERSION KU201768.1 GI:965568892 KEYWORDS . SOURCE Influenza A virus (A/mallard/Idaho/AH0005954/2014(H5N8)) ORGANISM Influenza A virus (A/mallard/Idaho/AH0005954/2014(H5N8)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1704) AUTHORS Killian,M.L. TITLE Direct Submission JOURNAL Submitted (25-NOV-2015) Diagnostic Virology Laboratory, National Veterinary Services Laboratories (NVSL), USDA APHIS VS, 1920 Dayton Avenue, Ames, IA 50010, USA COMMENT GenBank Accession Numbers KU201765-KU201772 represent sequences from the 8 segments of Influenza A virus (A/mallard/Idaho/AH0005954/2014(H5N8)). ##Assembly-Data-START## Assembly Method :: SeqMan NGen v. v4 Sequencing Technology :: Illumina; IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1704 /organism="Influenza A virus (A/mallard/Idaho/AH0005954/2014(H5N8))" /mol_type="viral cRNA" /strain="A/mallard/Idaho/AH0005954/2014" /serotype="H5N8" /isolation_source="oropharyngeal/cloacal swab pool from individual bird" /host="mallard; hunter harvest" /db_xref="taxon:1763713" /segment="4" /country="USA: Bingham County, Idaho" /collection_date="22-Dec-2014" /note="NVSL 15-003516-2; EP1; Eurasian origin H5N8 clade 2.3.4.4" gene 1..1704 /gene="HA" CDS 1..1704 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="ALT19310.1" /db_xref="GI:965568893" /translation="MEKIVLLLAVISLVKSDQICIGYHANNSTKQVDTIMEKNVTVTH AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA NDLCYPGTLNDYEELKHLLSRINHFEKTLIIPRSSWPNHETSLGVSAACPYQGASSFF RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAAEQTNLYKNPDTYVSVGT STLNQRLVPKIATRSQVNGQSGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG DSTIMKSEMEYGHCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR NSPLRERRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPKYS EEAILKREEISGVKLESIGTYQILSIYSTVASSLALAIIVAGLSLWMCSNGSLQCRIC I" sig_peptide 1..48 /gene="HA" mat_peptide 49..1035 /gene="HA" /product="HA1" mat_peptide 1036..1701 /gene="HA" /product="HA2" ORIGIN 1 atggagaaaa tagtgcttct tcttgcagtg attagccttg ttaaaagtga tcagatttgc 61 attggttacc atgcaaacaa ctcaacaaag caggttgaca cgataatgga gaaaaacgtc 121 actgttacac atgcccaaga catactggaa aagacacaca acgggaagct ctgcgatctt 181 aatggagtga agcccctgat tctaaaggat tgtagcgtag ctgggtggct ccttggaaat 241 ccaatgtgcg acgagttcat cagggtaccg gaatggtctt acatcgtgga gagggctaat 301 ccagccaacg acctatgtta cccagggacc ctcaatgact atgaggaact gaaacaccta 361 ttgagcagaa taaatcattt tgagaaaact ctgatcatcc ccaggagttc ttggcccaat 421 catgaaacat cattaggggt gagcgcagca tgtccatacc agggagcatc ctcatttttc 481 agaaatgtgg tatggctcat caaaaagaac gatgcatacc cgacaataaa gataagctac 541 aataatacca atcgggaaga tcttttgata ctgtggggga ttcatcattc caacaatgca 601 gcagagcaga caaatctcta taaaaaccca gacacttatg tttccgttgg gacatcaaca 661 ttaaaccaga gattggtgcc aaaaatagct actagatccc aagtaaacgg gcagagtgga 721 agaatggatt tcttctggac aattttaaaa ccgaatgatg caatccactt tgagagtaat 781 gggaacttca ttgctccaga atatgcatac aaaattgtca agaaagggga ctcaacaatt 841 atgaaaagtg aaatggagta tggccactgc aacaccaaat gtcaaactcc aataggggcg 901 ataaactcta gcatgccatt ccacaatata caccctctca ccatcgggga atgccccaaa 961 tacgtgaagt caaacaaatt agtccttgcg actgggctca gaaatagtcc tctaagagaa 1021 agaagaagaa aaagaggact atttggagct atagcagggt ttatagaggg aggatggcag 1081 ggaatggtag acggttggta tgggtatcat catagcaatg agcaggggag tgggtacgct 1141 gcagacaaag aatccaccca aaaggcaata gatggagtta ccaataaggt caactcaatc 1201 attgacaaaa tgaacactca atttgaggcc gttggaaggg aatttaataa cttagaaagg 1261 agaatagaga atttaaacaa gaaaatggaa gacggattcc tagatgtctg gacttataat 1321 gctgaacttt tagttctcat ggaaaatgag agaactctag attttcatga ctcaaatgtc 1381 aagaaccttt acgacaaagt ccgactacag cttagggata atgcaaagga gctgggcaat 1441 ggttgtttcg agttctatca caaatgtgat aacgaatgta tggagagcgt aagaaatggg 1501 acgtatgact accctaagta ttcagaagaa gcaatattaa aaagagaaga aataagcgga 1561 gtgaaattag aatcaatagg aacttaccag atactgtcaa tttattcaac agtggcgagt 1621 tccctagcac tggcaatcat agtggctggt ctatctttat ggatgtgctc taatgggtcg 1681 ttacaatgca gaatttgcat ctaa
niman Posted December 24, 2015 Author Report Posted December 24, 2015 LOCUS KU201776 1704 bp cRNA linear VRL 22-DEC-2015 DEFINITION Influenza A virus (A/mallard/Idaho/AH0005955/2014(H5N8)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION KU201776 VERSION KU201776.1 GI:965568846 KEYWORDS . SOURCE Influenza A virus (A/mallard/Idaho/AH0005955/2014(H5N8)) ORGANISM Influenza A virus (A/mallard/Idaho/AH0005955/2014(H5N8)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1704) AUTHORS Killian,M.L. TITLE Direct Submission JOURNAL Submitted (25-NOV-2015) Diagnostic Virology Laboratory, National Veterinary Services Laboratories (NVSL), USDA APHIS VS, 1920 Dayton Avenue, Ames, IA 50010, USA COMMENT GenBank Accession Numbers KU201773-KU201780 represent sequences from the 8 segments of Influenza A virus (A/mallard/Idaho/AH0005955/2014(H5N8)). ##Assembly-Data-START## Assembly Method :: SeqMan NGen v. v4 Sequencing Technology :: Illumina; IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1704 /organism="Influenza A virus (A/mallard/Idaho/AH0005955/2014(H5N8))" /mol_type="viral cRNA" /strain="A/mallard/Idaho/AH0005955/2014" /serotype="H5N8" /isolation_source="oropharyngeal/cloacal swab pool from individual bird" /host="mallard; hunter harvest" /db_xref="taxon:1763714" /segment="4" /country="USA: Bingham County, Idaho" /collection_date="22-Dec-2014" /note="NVSL 15-003516-3; EP1; Eurasian origin H5N8 clade 2.3.4.4" gene 1..1704 /gene="HA" CDS 1..1704 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="ALT19298.1" /db_xref="GI:965568847" /translation="MEKIVLLLAVISLVKSDQICIGYHANNSTKQVDTIMEKNVTVTH AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA NDLCYPGTLNDYEELKHLLSRINHFEKTLIIPRSSWPNHETSLGVSAACPYQGASSFF RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAAEQTNLYKNPDTYVSVGT STLNQRLVPKIATRSQVNGQSGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG DSTIMKSEMEYGHCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR NSPLRERRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPKYS EEAILKREEISGVKLESIGTYQILSIYSTVASSLALAIIVAGLSLWMCSNGSLQCRIC I" sig_peptide 1..48 /gene="HA" mat_peptide 49..1035 /gene="HA" /product="HA1" mat_peptide 1036..1701 /gene="HA" /product="HA2" ORIGIN 1 atggagaaaa tagtgcttct tcttgcagtg attagccttg ttaaaagtga tcagatttgc 61 attggttacc atgcaaacaa ctcaacaaag caggttgaca cgataatgga gaaaaacgtc 121 actgttacac atgcccaaga catactggaa aagacacaca acgggaagct ctgcgatctt 181 aatggagtga agcccctgat tctaaaggat tgtagcgtag ctgggtggct ccttggaaat 241 ccaatgtgcg acgagttcat cagggtaccg gaatggtctt acatcgtgga gagggctaat 301 ccagccaacg acctatgtta cccagggacc ctcaatgact atgaggaact gaaacaccta 361 ttgagcagaa taaatcattt tgagaaaact ctgatcatcc ccaggagttc ttggcccaat 421 catgaaacat cattaggggt gagcgcagca tgtccatacc agggagcatc ctcatttttc 481 agaaatgtgg tatggctcat caaaaagaac gatgcatacc cgacaataaa gataagctac 541 aataatacca atcgggaaga tcttttgata ctgtggggga ttcatcattc caacaatgca 601 gcagagcaga caaatctcta taaaaaccca gacacttatg tttccgttgg gacatcaaca 661 ttaaaccaga gattggtgcc aaaaatagct actagatccc aagtaaacgg gcagagtgga 721 agaatggatt tcttctggac aattttaaaa ccgaatgatg caatccactt tgagagtaat 781 ggaaatttca ttgctccaga atatgcatac aaaattgtca agaaagggga ctcaacaatt 841 atgaaaagtg aaatggagta tggccactgc aacaccaaat gtcaaactcc aataggggcg 901 ataaactcta gcatgccatt ccacaatata caccctctca ccatcgggga atgccccaaa 961 tacgtgaagt caaacaaatt agtccttgcg actgggctca gaaatagtcc tctaagagaa 1021 agaagaagaa aaagaggact atttggagct atagcagggt ttatagaggg aggatggcag 1081 ggaatggtag acggttggta tgggtatcat catagcaatg agcaggggag tgggtacgct 1141 gcagacaaag aatccaccca aaaggcaata gatggagtta ccaataaggt caactcaatc 1201 attgacaaaa tgaacactca atttgaggcc gttggaaggg aatttaataa cttagaaagg 1261 agaatagaga atttaaacaa gaaaatggaa gacggattcc tagatgtctg gacttataat 1321 gctgaacttt tagttctcat ggaaaatgag agaactctag attttcatga ctcaaatgtc 1381 aagaaccttt acgacaaagt ccgactacag cttagggata atgcaaagga gctgggcaat 1441 ggttgtttcg agttctatca caaatgtgat aacgaatgta tggagagcgt aagaaatggg 1501 acgtatgact accctaagta ttcagaagaa gcaatattaa aaagagaaga aataagcgga 1561 gtgaaattag aatcaatagg aacttaccag atactgtcaa tttattcaac agtggcgagt 1621 tccctagcac tggcaatcat agtggctggt ctatctttat ggatgtgctc taatgggtcg 1681 ttacaatgca gaatttgcat ctaa
niman Posted December 24, 2015 Author Report Posted December 24, 2015 LOCUS KU201784 1744 bp cRNA linear VRL 22-DEC-2015 DEFINITION Influenza A virus (A/mallard/Oregon/AH0003821/2014(H5N2)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION KU201784 VERSION KU201784.1 GI:965568803 KEYWORDS . SOURCE Influenza A virus (A/mallard/Oregon/AH0003821/2014(H5N2)) ORGANISM Influenza A virus (A/mallard/Oregon/AH0003821/2014(H5N2)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1744) AUTHORS Killian,M.L. TITLE Direct Submission JOURNAL Submitted (25-NOV-2015) Diagnostic Virology Laboratory, National Veterinary Services Laboratories (NVSL), USDA APHIS VS, 1920 Dayton Avenue, Ames, IA 50010, USA COMMENT GenBank Accession Numbers KU201781-KU201788 represent sequences from the 8 segments of Influenza A virus (A/mallard/Oregon/AH0003821/2014(H5N2)). ##Assembly-Data-START## Assembly Method :: SeqMan NGen v. v4 Sequencing Technology :: Illumina; IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1744 /organism="Influenza A virus (A/mallard/Oregon/AH0003821/2014(H5N2))" /mol_type="viral cRNA" /strain="A/mallard/Oregon/AH0003821/2014" /serotype="H5N2" /isolation_source="oropharyngeal/cloacal swab pool from individual bird" /host="mallard; hunter harvest" /db_xref="taxon:1763721" /segment="4" /country="USA: Lane County, Oregon" /collection_date="20-Dec-2014" /note="NVSL 14-042650-2; EP1; Eurasian origin (EA-H5N8 clade 2.3.4.4)-North American reassortant" gene 17..1720 /gene="HA" CDS 17..1720 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="ALT19286.1" /db_xref="GI:965568804" /translation="MEKIVLLFAVISLVKSDQICIGYHANNSTKQVDTIMEKNVTVTH AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA NDLCYPGTLNDYEELKHLLSRINHFEKTLIIPRSSWPNHETSLGVSAACPYQGASSFF RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAAEQTNLYKNPDTYVSVGT STLNQRLVPKIATRSQVNGQSGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG DSTIMKSEMEYGHCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR NSPLRERRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPKYS EEAILKREEISGVKLESIGTYQILSIYSTVASSLALAIIVAGLSLWMCSNGSLQCRIC I" sig_peptide 17..64 /gene="HA" mat_peptide 65..1051 /gene="HA" /product="HA1" mat_peptide 1052..1717 /gene="HA" /product="HA2" ORIGIN 1 ggttcaatct gtcaaaatgg agaaaatagt gcttcttttt gcagtgatta gccttgttaa 61 aagtgatcag atttgcattg gttaccatgc aaacaactca acaaagcagg ttgacacgat 121 aatggagaaa aacgtcactg ttacacatgc ccaagacata ctggaaaaga cacacaacgg 181 gaagctctgc gatcttaatg gagtgaagcc cctgattcta aaggattgta gcgtagctgg 241 gtggctcctt ggaaatccaa tgtgcgacga gttcatcagg gtaccggaat ggtcttacat 301 cgtggagagg gctaacccag ccaacgacct ctgttaccca gggaccctca atgactatga 361 ggaactgaaa cacctattga gcagaataaa tcattttgag aaaactctga tcatccccag 421 gagttcttgg cccaatcatg aaacatcatt aggggtgagc gcagcatgtc cataccaggg 481 agcatcctca tttttcagaa atgtggtatg gctcatcaaa aagaacgatg catacccgac 541 aataaagata agctacaata ataccaatcg ggaagatctt ttgatactgt gggggattca 601 tcattccaac aatgcagcag agcagacaaa tctctataaa aacccagaca cttatgtttc 661 cgttgggaca tcaacattaa accagagatt ggtgccaaaa atagctacta gatcccaagt 721 aaacgggcag agtggaagaa tggatttctt ctggacaatt ttaaaaccga atgatgcaat 781 ccactttgag agtaatggaa atttcattgc tccagaatat gcatacaaaa ttgtcaagaa 841 aggggactca acaattatga aaagtgaaat ggagtatggc cactgcaaca ccaaatgtca 901 aactccaata ggggcgataa actctagcat gccattccac aatatacacc ctctcaccat 961 cggggaatgc cccaaatacg tgaagtcaaa caaattagtc cttgcgactg ggctcagaaa 1021 tagtcctcta agagaaagaa gaagaaaaag aggactattt ggagctatag cagggtttat 1081 agagggagga tggcagggaa tggtagacgg ttggtatggg tatcatcata gcaatgagca 1141 ggggagtggg tacgctgcag acaaagaatc aacccaaaag gcaatagatg gagttaccaa 1201 taaggtcaac tcaatcattg acaaaatgaa cactcaattt gaggccgttg gaagggaatt 1261 taataactta gaaaggagaa tagagaattt aaacaagaaa atggaagacg gattcctaga 1321 tgtctggact tataatgctg aacttttagt tctcatggaa aatgagagaa ctctagattt 1381 ccatgactca aatgtcaaga acctttacga caaagtccga ctacagctta gggataatgc 1441 aaaggagctg ggtaatggtt gtttcgagtt ctatcacaaa tgtgataacg aatgtatgga 1501 gagcgtaaga aatgggacgt atgactaccc taagtattca gaagaagcaa tattaaaaag 1561 agaagaaata agcggagtga aattagaatc aataggaact taccagatac tgtcaattta 1621 ttcaacagtg gcgagttccc tagcactggc aatcatagtg gctggtctat ctttatggat 1681 gtgctctaat gggtcgttac aatgcagaat ttgcatctaa atttgtgagc tcagattgta 1741 atta
niman Posted December 24, 2015 Author Report Posted December 24, 2015 LOCUS KU201792 1744 bp cRNA linear VRL 22-DEC-2015 DEFINITION Influenza A virus (A/chicken/California/15-004912/2015(H5N8)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION KU201792 VERSION KU201792.1 GI:965568768 KEYWORDS . SOURCE Influenza A virus (A/chicken/California/15-004912/2015(H5N8)) ORGANISM Influenza A virus (A/chicken/California/15-004912/2015(H5N8)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1744) AUTHORS Killian,M.L. TITLE Direct Submission JOURNAL Submitted (25-NOV-2015) Diagnostic Virology Laboratory, National Veterinary Services Laboratories (NVSL), USDA APHIS VS, 1920 Dayton Avenue, Ames, IA 50010, USA COMMENT GenBank Accession Numbers KU201789-KU201796 represent sequences from the 8 segments of Influenza A virus (A/chicken/California/15-004912/2015(H5N8)). ##Assembly-Data-START## Assembly Method :: SeqMan NGen v. v4 Sequencing Technology :: IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1744 /organism="Influenza A virus (A/chicken/California/15-004912/2015(H5N8))" /mol_type="viral cRNA" /strain="A/chicken/California/15-004912/2015" /serotype="H5N8" /isolation_source="swab; pooled sample" /host="chicken; commercial layer" /db_xref="taxon:1763712" /segment="4" /country="USA: Kings County, California" /collection_date="06-Feb-2015" /note="NVSL 15-004912; EP1; Eurasian origin EA-H5N8 clade 2.3.4.4" gene 17..1720 /gene="HA" CDS 17..1720 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="ALT19274.1" /db_xref="GI:965568769" /translation="MEKIVLLLAVISLVKSDQICIGYHANNSTKQVDTIMEKNVTVTH AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA NDLCYPGTLNDYEELKHLLSRINHFEKTLIIPRSSWPNHETSLGVSAACPYQGASSFF RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAAEQTNLYKNPDTYVSVGT STLNQRLVPKIATRSQVNGQSGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG DSTIMKSEMEYGHCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR NSPLRERRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPKYS EEAILKREEISGVKLESIGTYQILSIYSTVASSLALAIIVAGLSLWMCSNGSLQCRIC I" sig_peptide 17..64 /gene="HA" mat_peptide 65..1051 /gene="HA" /product="HA1" mat_peptide 1052..1717 /gene="HA" /product="HA2" ORIGIN 1 ggttcaatct gtcaaaatgg agaaaatagt gcttcttctt gcagtgatta gccttgttaa 61 aagtgatcag atttgcattg gttaccatgc aaacaactca acaaagcagg ttgacacgat 121 aatggagaaa aacgtcactg ttacacatgc ccaagacata ctggaaaaga cacacaacgg 181 gaagctctgc gatcttaatg gagtgaagcc cctgattcta aaggattgta gcgtagctgg 241 gtggctcctt ggaaatccaa tgtgcgacga gttcatcagg gtaccggaat ggtcttacat 301 cgtggagagg gctaatccag ccaacgacct atgttaccca gggaccctca atgactatga 361 ggaactgaaa cacctattga gcagaataaa tcattttgag aaaactctga tcatccccag 421 gagttcttgg cccaatcatg aaacatcatt aggggtgagc gcagcatgtc cataccaggg 481 agcatcttca tttttcagaa atgtggtatg gctcatcaaa aagaacgatg catacccgac 541 aataaagata agctacaata acaccaatcg ggaagatctt ttgatactgt gggggattca 601 tcattccaac aatgcagcag agcagacaaa tctctataaa aacccagaca cttatgtttc 661 cgttgggaca tcaacattaa accagagatt ggtgccaaaa atagctacta gatcccaagt 721 aaacgggcag agtggaagaa tggatttctt ctggacaatt ttaaaaccga atgatgcaat 781 ccactttgag agtaatggaa atttcattgc tccagaatat gcatacaaaa ttgtcaagaa 841 aggggactca acaattatga aaagtgaaat ggagtatggc cactgcaaca ccaaatgtca 901 aactccaata ggggcgataa actctagcat gccattccac aatatacacc ctctcaccat 961 cggggaatgc cccaaatacg tgaagtcaaa caaattagtc cttgcgactg ggctcagaaa 1021 tagtcctcta agagaaagaa gaagaaaaag aggactattt ggagctatag cagggtttat 1081 agagggagga tggcagggaa tggtagacgg ttggtatggg tatcatcata gcaatgagca 1141 ggggagtggg tacgctgcag acaaagaatc cacccaaaag gcaatagatg gagttaccaa 1201 taaggtcaac tcaatcattg acaaaatgaa cactcaattt gaggccgttg gaagggaatt 1261 taataactta gaaaggagaa tagagaattt aaacaagaaa atggaagacg gattcctaga 1321 tgtctggact tataatgctg aacttttagt tctcatggaa aatgagagaa ctctagattt 1381 tcatgactca aatgtcaaga acctttacga caaagtccga ctacagctta gggataatgc 1441 aaaggagctg ggcaatggtt gtttcgagtt ctatcacaaa tgtgataacg aatgtatgga 1501 gagcgtaaga aatgggacgt atgactaccc taagtattca gaagaagcaa tattaaaaag 1561 agaagaaata agcggagtga aattagaatc aataggaact taccagatac tgtcaattta 1621 ttcaacagtg gcgagttccc tagcactggc aatcatagtg gctggtctat ctttatggat 1681 gtgctctaat gggtcgttac aatgcagaat ttgcatctaa atttgtgagc tcagattgta 1741 atta
niman Posted December 24, 2015 Author Report Posted December 24, 2015 LOCUS KU201800 1744 bp cRNA linear VRL 22-DEC-2015 DEFINITION Influenza A virus (A/bald eagle/Idaho/15-002892-2/2015(H5N8)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION KU201800 VERSION KU201800.1 GI:965568710 KEYWORDS . SOURCE Influenza A virus (A/bald eagle/Idaho/15-002892-2/2015(H5N8)) ORGANISM Influenza A virus (A/bald eagle/Idaho/15-002892-2/2015(H5N8)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1744) AUTHORS Killian,M.L. TITLE Direct Submission JOURNAL Submitted (25-NOV-2015) Diagnostic Virology Laboratory, National Veterinary Services Laboratories (NVSL), USDA APHIS VS, 1920 Dayton Avenue, Ames, IA 50010, USA COMMENT GenBank Accession Numbers KU201797-KU201804 represent sequences from the 8 segments of Influenza A virus (A/bald eagle/Idaho/15-002892-2/2015(H5N8)). ##Assembly-Data-START## Assembly Method :: SeqMan NGen v. v4 Sequencing Technology :: Illumina; IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1744 /organism="Influenza A virus (A/bald eagle/Idaho/15-002892-2/2015(H5N8))" /mol_type="viral cRNA" /strain="A/bald eagle/Idaho/15-002892-2/2015" /serotype="H5N8" /isolation_source="tracheal swab" /host="bald eagle; mortality investigation" /db_xref="taxon:1763711" /segment="4" /country="USA: Canyon County, Idaho" /collection_date="20-Jan-2015" /collected_by="Idaho Fish and Game" /note="NVSL 15-002892-2; EP1; Eurasian origin EA-H5N8 clade 2.3.4.4" gene 17..1720 /gene="HA" CDS 17..1720 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="ALT19262.1" /db_xref="GI:965568711" /translation="MEKIVLLLAVISLVKSDQICIGYHANNSTKQVDTIMEKNVTVTH AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA NDLCYPGTLNDYEELKHLLSRINHFEKTLIIPRSSWPNHETSLGVSAACPYQGASSFF RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAAEQTNLYKNPDTYVSVGT STLNQRLVPKIATRSQVNGQSGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG DSTIMKSEMEYGHCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR NSPLRERRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPKYS EEAILKREEISGVKLESIGTYQILSIYSTVASSLALAIIVAGLSLWMCSNGSLQCRIC I" sig_peptide 17..64 /gene="HA" mat_peptide 65..1051 /gene="HA" /product="HA1" mat_peptide 1052..1717 /gene="HA" /product="HA2" ORIGIN 1 ggttcaatct gtcaaaatgg agaaaatagt gcttcttctt gcagtgatta gccttgttaa 61 aagtgatcag atttgcattg gttaccatgc aaacaactca acaaagcagg ttgacacgat 121 aatggagaaa aacgtcactg ttacacatgc ccaagacata ctggaaaaga cacacaacgg 181 gaagctctgc gatcttaatg gagtgaagcc cctgattcta aaggattgta gcgtagctgg 241 gtggctcctt ggaaatccaa tgtgcgacga gttcatcagg gtaccggaat ggtcttacat 301 cgtggagagg gctaatccag ccaacgacct atgttaccca gggaccctca atgactatga 361 ggaactgaaa cacctattga gcagaataaa tcattttgag aaaactctga tcatccccag 421 gagttcttgg cccaatcatg aaacatcatt aggggtgagc gcagcatgtc cataccaggg 481 agcatcctca tttttcagaa atgtggtatg gctcatcaaa aagaacgatg catacccgac 541 aataaagata agctacaata ataccaatcg ggaagatctt ttgatactgt gggggattca 601 tcattccaac aatgcagcag agcagacaaa tctctataaa aacccagaca cttatgtttc 661 cgttgggaca tcaacattaa accagagatt ggtgccaaaa atagctacta gatcccaagt 721 aaacgggcag agtggaagaa tggatttctt ctggacaatt ttaaaaccga atgatgcaat 781 ccactttgag agtaatggaa atttcattgc tccagaatat gcatacaaaa ttgtcaagaa 841 aggggactca acaattatga aaagtgaaat ggagtatggc cactgcaaca ccaaatgtca 901 aactccaata ggggcgataa actctagcat gccattccac aatatacacc ctctcaccat 961 cggggaatgc cccaaatacg tgaagtcaaa caaattagtc cttgcgactg ggctcagaaa 1021 tagtcctcta agagaaagaa gaagaaaaag aggactattt ggagctatag cagggtttat 1081 agagggagga tggcagggaa tggtagacgg ttggtatggg tatcatcata gcaatgagca 1141 ggggagtggg tacgctgcag acaaagaatc cacccaaaag gcaatagatg gagttaccaa 1201 taaggtcaac tcaatcattg acaaaatgaa cactcaattt gaggccgttg gaagggaatt 1261 taataactta gaaaggagaa tagagaattt aaacaagaaa atggaagacg gattcctaga 1321 tgtctggact tataatgctg aacttttagt tctcatggaa aatgagagaa ctctagattt 1381 tcatgactca aatgtcaaga acctttacga caaagtccga ctacagctta gggataatgc 1441 aaaggagctg ggcaatggtt gtttcgagtt ctatcacaaa tgtgataacg aatgtatgga 1501 gagcgtaaga aatgggacgt atgactaccc taagtattca gaagaagcaa tattaaaaag 1561 agaagaaata agcggagtga aattagaatc aataggaact taccagatac tgtcaattta 1621 ttcaacagtg gcgagttccc tagcactggc aatcatagtg gctggtctat ctttatggat 1681 gtgctctaat gggtcgttac aatgcagaat ttgcatctaa atttgtgagc tcagattgta 1741 atta
niman Posted December 24, 2015 Author Report Posted December 24, 2015 LOCUS KU201808 1744 bp cRNA linear VRL 22-DEC-2015 DEFINITION Influenza A virus (A/Northern pintail/Washington/195365/2014(H5N2)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION KU201808 VERSION KU201808.1 GI:965568641 KEYWORDS . SOURCE Influenza A virus (A/Northern pintail/Washington/195365/2014(H5N2)) ORGANISM Influenza A virus (A/Northern pintail/Washington/195365/2014(H5N2)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1744) AUTHORS Killian,M.L., Ip,H.S., Griffin,K., Messer,J., McMullen,K., Dusek,R. and Bodenstein,B. TITLE Direct Submission JOURNAL Submitted (27-NOV-2015) Diagnostic Virology Laboratory, National Veterinary Services Laboratories (NVSL), USDA APHIS VS, 1920 Dayton Avenue, Ames, IA 50010, USA COMMENT GenBank Accession Numbers KU201805-KU201812 represent sequences from the 8 segments of Influenza A virus (A/Northern pintail/Washington/195365/2014(H5N2)). ##Assembly-Data-START## Assembly Method :: SeqMan NGen v. v4 Sequencing Technology :: Illumina; IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1744 /organism="Influenza A virus (A/Northern pintail/Washington/195365/2014(H5N2))" /mol_type="viral cRNA" /strain="A/Northern pintail/Washington/195365/2014" /serotype="H5N2" /isolation_source="oropharyngeal/cloacal swab pool from individual bird" /host="northern pintail; hunter harvest" /db_xref="taxon:1763706" /segment="4" /country="USA: Clark County, Washington" /collection_date="23-Dec-2014" /note="NVSL 15-000377-1; EP1; Eurasian origin (EA-H5N8 clade 2.3.4.4)-North American reassortant" gene 17..1720 /gene="HA" CDS 17..1720 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="ALT19250.1" /db_xref="GI:965568642" /translation="MEKIVLLLAVISLVKSDQICIGYHANNSTKQVDTIMEKNVTVTH AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA NDLCYPGTLNDYEELKHLLSRINHFEKTLIIPRSSLPNHETSLGVSAACPYQGASSFF RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAAEQTNLYKNPDTYVSVGT STLNQRLVPKIATRSQVNGQSGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG DSTIMKSEMEYGHCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR NSPLRERRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPKYS EEAILKREEISGVKLESIGTYQILSIYSTVASSLALAIIVAGLSLWMCSNGSLQCRIC I" sig_peptide 17..64 /gene="HA" mat_peptide 65..1051 /gene="HA" /product="HA1" mat_peptide 1052..1717 /gene="HA" /product="HA2" ORIGIN 1 ggttcaatct gtcaaaatgg agaaaatagt gcttcttctt gcagtgatta gccttgttaa 61 aagtgatcag atttgcattg gttaccatgc aaacaactca acaaagcagg ttgacacgat 121 aatggagaaa aacgtcactg ttacacatgc ccaagacata ctggaaaaga cacacaacgg 181 gaagctctgc gatcttaatg gagtgaagcc cctgattcta aaggattgta gcgtagctgg 241 gtggctcctt ggaaatccaa tgtgcgacga gttcatcagg gtaccggaat ggtcttacat 301 cgtggagagg gctaacccag ccaacgacct ctgttaccca gggaccctca atgactatga 361 ggaactgaaa cacctattga gcagaataaa tcattttgag aaaactctga tcatccccag 421 gagttctttg cccaatcatg aaacatcatt aggggtgagc gcagcatgtc cataccaggg 481 agcatcctca tttttcagaa atgtggtatg gctcatcaaa aagaacgatg catacccgac 541 aataaagata agctacaata ataccaatcg agaagatctt ttgatactgt gggggattca 601 tcattccaac aatgcagcag agcagacaaa tctctataaa aacccagaca cttatgtttc 661 cgttgggaca tcaacattaa accagagatt ggtgccaaaa atagctacta gatcccaagt 721 aaacgggcag agtggaagaa tggatttctt ctggacaatt ttaaaaccga atgatgcaat 781 ccactttgag agtaatggaa atttcattgc tccagaatat gcatacaaaa ttgtcaagaa 841 aggggactca acaattatga aaagtgaaat ggagtatggc cactgcaaca ccaaatgtca 901 aactccaata ggggcgataa actctagcat gccattccac aatatacacc ctctcaccat 961 cggggaatgc cccaaatacg tgaagtcaaa caaattagtc cttgcgactg ggctcagaaa 1021 tagtcctcta agagaaagaa gaagaaaaag aggactattt ggagctatag cagggtttat 1081 agagggagga tggcagggaa tggtagacgg ttggtatggg tatcatcata gcaatgagca 1141 ggggagtggg tacgctgcag acaaagaatc aacccaaaag gcaatagatg gagttaccaa 1201 taaggtcaac tcaatcattg acaaaatgaa cactcaattt gaggccgttg gaagggaatt 1261 taataactta gaaaggagaa tagagaattt aaacaagaaa atggaagacg gattcctaga 1321 tgtctggact tataatgctg aacttttagt tctcatggaa aatgagagaa ctctagattt 1381 ccatgactca aatgtcaaga acctttacga caaagtccga ctacagctta gggataatgc 1441 aaaggagctg ggtaatggtt gtttcgagtt ctatcacaaa tgtgataacg aatgtatgga 1501 gagcgtaaga aatgggacgt atgactaccc taagtattca gaagaagcaa tattaaaaag 1561 agaagaaata agcggagtga aattagaatc aataggaact taccagatac tgtcaattta 1621 ttcaacagtg gcgagttccc tagcactggc aatcatagtg gctggtctat ctttatggat 1681 gtgctctaat gggtcgttac aatgcagaat ttgcatctaa atttgtgagc tcagattgta 1741 atta
niman Posted December 24, 2015 Author Report Posted December 24, 2015 LOCUS KU201816 1744 bp cRNA linear VRL 22-DEC-2015 DEFINITION Influenza A virus (A/mallard/Oregon/195547/2014(H5N2)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION KU201816 VERSION KU201816.1 GI:965568602 KEYWORDS . SOURCE Influenza A virus (A/mallard/Oregon/195547/2014(H5N2)) ORGANISM Influenza A virus (A/mallard/Oregon/195547/2014(H5N2)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1744) AUTHORS Killian,M.L., Ip,H.S., Griffin,K., Messer,J., McMullen,K., Dusek,R. and Bodenstein,B. TITLE Direct Submission JOURNAL Submitted (27-NOV-2015) Diagnostic Virology Laboratory, National Veterinary Services Laboratories (NVSL), USDA APHIS VS, 1920 Dayton Avenue, Ames, IA 50010, USA COMMENT GenBank Accession Numbers KU201813-KU201820 represent sequences from the 8 segments of Influenza A virus (A/mallard/Oregon/195547/2014(H5N2)). ##Assembly-Data-START## Assembly Method :: SeqMan NGen v. v4 Sequencing Technology :: Illumina; IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1744 /organism="Influenza A virus (A/mallard/Oregon/195547/2014(H5N2))" /mol_type="viral cRNA" /strain="A/mallard/Oregon/195547/2014" /serotype="H5N2" /isolation_source="oropharyngeal/cloacal swab pool from individual bird" /host="mallard; hunter harvest" /db_xref="taxon:1763720" /segment="4" /country="USA: Columbia County, Oregon" /collection_date="22-Dec-2014" /note="NVSL 15-000377-4; EP1; Eurasian origin (EA-H5N8 clade 2.3.4.4)-North American reassortant" gene 17..1720 /gene="HA" CDS 17..1720 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="ALT19238.1" /db_xref="GI:965568603" /translation="MEKIVLLFAVISLVKSDQICIGYHANNSTKQVDTIMEKNVTVTH AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA NDLCYPGTLNDYEELKHLLSRINHFEKTLIIPRSSWPNHETSLGVSAACPYQGASSFF RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAAEQTNLYKNPDTYVSVGT STLNQRLVPKIATRSQVNGQSGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG DSTIMKSEMEYGHCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR NSPLRERRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPKYS EEAILKREEISGVKLESIGTYQILSIYSTVASSLALAIIVAGLSLWMCSNGSLQCRIC I" sig_peptide 17..64 /gene="HA" mat_peptide 65..1051 /gene="HA" /product="HA1" mat_peptide 1052..1717 /gene="HA" /product="HA2" ORIGIN 1 ggttcaatct gtcaaaatgg agaaaatagt gcttcttttt gcagtgatta gccttgttaa 61 aagtgatcag atttgcattg gttaccatgc aaacaactca acaaagcagg ttgacacgat 121 aatggagaaa aacgtcactg ttacacatgc ccaagacata ctggaaaaga cacacaacgg 181 gaagctctgc gatcttaatg gagtgaagcc cctgattcta aaggattgta gcgtagctgg 241 gtggctcctt ggaaatccaa tgtgcgacga gttcatcagg gtaccggaat ggtcttacat 301 cgtggagagg gctaacccag ccaacgacct ctgttaccca gggaccctca atgactatga 361 ggaactgaaa cacctattga gcagaataaa tcattttgag aaaactctga tcatccccag 421 gagttcttgg cccaatcatg aaacatcatt aggggtgagc gcagcatgtc cataccaggg 481 agcatcctca tttttcagaa atgtggtatg gctcatcaaa aagaacgatg catacccgac 541 aataaagata agctacaata ataccaatcg ggaagatctt ttgatactgt gggggattca 601 tcattccaac aatgcagcag agcagacaaa tctctataaa aacccagaca cttatgtttc 661 cgttgggaca tcaacattaa accagaggtt ggtgccaaaa atagctacta gatcccaagt 721 aaacgggcag agtggaagaa tggatttctt ctggacaatt ttaaaaccga atgatgcaat 781 ccactttgag agtaatggaa atttcattgc tccagaatat gcatacaaaa ttgtcaagaa 841 aggggactca acaattatga aaagtgaaat ggagtatggc cactgcaaca ccaaatgtca 901 aactccaata ggggcgataa actctagcat gccattccac aatatacacc ctctcaccat 961 cggggaatgc cccaaatacg tgaagtcaaa caaattagtc cttgcgactg ggctcagaaa 1021 tagtcctcta agagaaagaa gaagaaaaag aggactattt ggagctatag cagggtttat 1081 agagggagga tggcagggaa tggtagacgg ttggtatggg tatcatcata gcaatgagca 1141 ggggagtggg tacgctgcag acaaagaatc aacccaaaag gcaatagatg gagttaccaa 1201 taaggtcaac tcaatcattg acaaaatgaa cactcaattt gaggccgttg gaagggaatt 1261 taataactta gaaaggagaa tagagaattt aaacaagaaa atggaagacg gattcctaga 1321 tgtctggact tataatgctg aacttttagt tctcatggaa aatgagagaa ctctagattt 1381 ccatgactca aatgtcaaga acctttacga caaagtccga ctacagctta gggataatgc 1441 aaaggagctg ggtaatggtt gtttcgagtt ctatcacaaa tgtgataacg aatgtatgga 1501 gagcgtaaga aatgggacgt atgactaccc taagtattca gaagaagcaa tattaaaaag 1561 agaagaaata agcggagtga aattagaatc aataggaact taccagatac tgtcaattta 1621 ttcaacagtg gcgagttccc tagcactggc aatcatagtg gctggtctat ctttatggat 1681 gtgctctaat gggtcgttac aatgcagaat ttgcatctaa atttgtgagc tcagattgta 1741 atta
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