APHIS Releases Fujian H5N1 H5N2 H5N8 Wild Bird Sequences

niman · December 24, 2015

APHIS has released a large series of wild bird clade 2.3.4.4 H5N1, H5N2, and H5N8 sequences dating back to December 2014,

niman · December 24, 2015

KU201877	Avian	1	H5N8	USA	2014/12/16	2287	Influenza A virus (A/American American wigeon/Washington/195198/2014(H5N8))			c
KU201878	Avian	2	H5N8	USA	2014/12/16	2290	Influenza A virus (A/American American wigeon/Washington/195198/2014(H5N8))			c
KU201879	Avian	3	H5N8	USA	2014/12/16	2182	Influenza A virus (A/American American wigeon/Washington/195198/2014(H5N8))			c
KU201880	Avian	4	H5N8	USA	2014/12/16	1744	Influenza A virus (A/American American wigeon/Washington/195198/2014(H5N8))			c
KU201881	Avian	5	H5N8	USA	2014/12/16	1524	Influenza A virus (A/American American wigeon/Washington/195198/2014(H5N8))			c
KU201882	Avian	6	H5N8	USA	2014/12/16	1427	Influenza A virus (A/American American wigeon/Washington/195198/2014(H5N8))			c
KU201883	Avian	7	H5N8	USA	2014/12/16	987	Influenza A virus (A/American American wigeon/Washington/195198/2014(H5N8))			c
KU201884	Avian	8	H5N8	USA	2014/12/16	850	Influenza A virus (A/American American wigeon/Washington/195198/2014(H5N8))			c
KU201725	Avian	1	H5N2	USA	2015/01/18	2287	Influenza A virus (A/American green-winged teal/Idaho/AH0011899/2015(H5N2))			c
KU201726	Avian	2	H5N2	USA	2015/01/18	2274	Influenza A virus (A/American green-winged teal/Idaho/AH0011899/2015(H5N2))			c
KU201727	Avian	3	H5N2	USA	2015/01/18	2151	Influenza A virus (A/American green-winged teal/Idaho/AH0011899/2015(H5N2))			c
KU201728	Avian	4	H5N2	USA	2015/01/18	1744	Influenza A virus (A/American green-winged teal/Idaho/AH0011899/2015(H5N2))			c
KU201729	Avian	5	H5N2	USA	2015/01/18	1497	Influenza A virus (A/American green-winged teal/Idaho/AH0011899/2015(H5N2))			c
KU201730	Avian	6	H5N2	USA	2015/01/18	1426	Influenza A virus (A/American green-winged teal/Idaho/AH0011899/2015(H5N2))			c
KU201731	Avian	7	H5N2	USA	2015/01/18	987	Influenza A virus (A/American green-winged teal/Idaho/AH0011899/2015(H5N2))			c
KU201732	Avian	8	H5N2	USA	2015/01/18	838	Influenza A virus (A/American green-winged teal/Idaho/AH0011899/2015(H5N2))			c
KU201733	Avian	1	H5N2	USA	2015/01/14	2280	Influenza A virus (A/American green-winged teal/Oregon/AH0012403/2015(H5N2))			c
KU201734	Avian	2	H5N2	USA	2015/01/14	2274	Influenza A virus (A/American green-winged teal/Oregon/AH0012403/2015(H5N2))			c
KU201735	Avian	3	H5N2	USA	2015/01/14	2151	Influenza A virus (A/American green-winged teal/Oregon/AH0012403/2015(H5N2))			c
KU201736	Avian	4	H5N2	USA	2015/01/14	1704	Influenza A virus (A/American green-winged teal/Oregon/AH0012403/2015(H5N2))			c
KU201737	Avian	5	H5N2	USA	2015/01/14	1497	Influenza A virus (A/American green-winged teal/Oregon/AH0012403/2015(H5N2))			c
KU201738	Avian	6	H5N2	USA	2015/01/14	1410	Influenza A virus (A/American green-winged teal/Oregon/AH0012403/2015(H5N2))			c
KU201739	Avian	7	H5N2	USA	2015/01/14	982	Influenza A virus (A/American green-winged teal/Oregon/AH0012403/2015(H5N2))			c
KU201740	Avian	8	H5N2	USA	2015/01/14	838	Influenza A virus (A/American green-winged teal/Oregon/AH0012403/2015(H5N2))			c
KU201749	Avian	1	H5N8	USA	2015/01/18	2280	Influenza A virus (A/American wigeon/Oregon/AH0012525/2015(H5N8))			c
KU201750	Avian	2	H5N8	USA	2015/01/18	2274	Influenza A virus (A/American wigeon/Oregon/AH0012525/2015(H5N8))			c
KU201751	Avian	3	H5N8	USA	2015/01/18	2151	Influenza A virus (A/American wigeon/Oregon/AH0012525/2015(H5N8))			c
KU201752	Avian	4	H5N8	USA	2015/01/18	1704	Influenza A virus (A/American wigeon/Oregon/AH0012525/2015(H5N8))			c
KU201753	Avian	5	H5N8	USA	2015/01/18	1497	Influenza A virus (A/American wigeon/Oregon/AH0012525/2015(H5N8))			c
KU201754	Avian	6	H5N8	USA	2015/01/18	1413	Influenza A virus (A/American wigeon/Oregon/AH0012525/2015(H5N8))			c
KU201755	Avian	7	H5N8	USA	2015/01/18	982	Influenza A virus (A/American wigeon/Oregon/AH0012525/2015(H5N8))			c
KU201756	Avian	8	H5N8	USA	2015/01/18	838	Influenza A virus (A/American wigeon/Oregon/AH0012525/2015(H5N8))			c
KU201613	Avian	1	H5N8	USA	2015/01/02	2287	Influenza A virus (A/American wigeon/Utah/AH0007824/2015(H5N8))			c
KU201614	Avian	2	H5N8	USA	2015/01/02	2290	Influenza A virus (A/American wigeon/Utah/AH0007824/2015(H5N8))			c
KU201615	Avian	3	H5N8	USA	2015/01/02	2182	Influenza A virus (A/American wigeon/Utah/AH0007824/2015(H5N8))			c
KU201616	Avian	4	H5N8	USA	2015/01/02	1744	Influenza A virus (A/American wigeon/Utah/AH0007824/2015(H5N8))			c
KU201617	Avian	5	H5N8	USA	2015/01/02	1524	Influenza A virus (A/American wigeon/Utah/AH0007824/2015(H5N8))			c
KU201618	Avian	6	H5N8	USA	2015/01/02	1427	Influenza A virus (A/American wigeon/Utah/AH0007824/2015(H5N8))			c
KU201619	Avian	7	H5N8	USA	2015/01/02	987	Influenza A virus (A/American wigeon/Utah/AH0007824/2015(H5N8))			c
KU201620	Avian	8	H5N8	USA	2015/01/02	850	Influenza A virus (A/American wigeon/Utah/AH0007824/2015(H5N8))			c
KU201885	Avian	1	H5N8	USA	2014/12/16	2287	Influenza A virus (A/American wigeon/Washington/195205/2014(H5N8))			c
KU201886	Avian	2	H5N8	USA	2014/12/16	2290	Influenza A virus (A/American wigeon/Washington/195205/2014(H5N8))			c
KU201887	Avian	3	H5N8	USA	2014/12/16	2182	Influenza A virus (A/American wigeon/Washington/195205/2014(H5N8))			c
KU201888	Avian	4	H5N8	USA	2014/12/16	1744	Influenza A virus (A/American wigeon/Washington/195205/2014(H5N8))			c
KU201889	Avian	5	H5N8	USA	2014/12/16	1524	Influenza A virus (A/American wigeon/Washington/195205/2014(H5N8))			c
KU201890	Avian	6	H5N8	USA	2014/12/16	1427	Influenza A virus (A/American wigeon/Washington/195205/2014(H5N8))			c
KU201891	Avian	7	H5N8	USA	2014/12/16	987	Influenza A virus (A/American wigeon/Washington/195205/2014(H5N8))			c
KU201892	Avian	8	H5N8	USA	2014/12/16	850	Influenza A virus (A/American wigeon/Washington/195205/2014(H5N8))			c
KU201821	Avian	1	H5N8	USA	2014/12/30	2287	Influenza A virus (A/American wigeon/Washington/195968/2014(H5N8))			c
KU201822	Avian	2	H5N8	USA	2014/12/30	2290	Influenza A virus (A/American wigeon/Washington/195968/2014(H5N8))			c
KU201823	Avian	3	H5N8	USA	2014/12/30	2182	Influenza A virus (A/American wigeon/Washington/195968/2014(H5N8))			c
KU201824	Avian	4	H5N8	USA	2014/12/30	1744	Influenza A virus (A/American wigeon/Washington/195968/2014(H5N8))			c
KU201825	Avian	5	H5N8	USA	2014/12/30	1524	Influenza A virus (A/American wigeon/Washington/195968/2014(H5N8))			c
KU201826	Avian	6	H5N8	USA	2014/12/30	1427	Influenza A virus (A/American wigeon/Washington/195968/2014(H5N8))			c
KU201827	Avian	7	H5N8	USA	2014/12/30	987	Influenza A virus (A/American wigeon/Washington/195968/2014(H5N8))			c
KU201828	Avian	8	H5N8	USA	2014/12/30	850	Influenza A virus (A/American wigeon/Washington/195968/2014(H5N8))			c
KU201853	Avian	1	H5N1	USA	2015/01/02	2287	Influenza A virus (A/American wigeon/Washington/196336/2015(H5N1))			c
KU201854	Avian	2	H5N1	USA	2015/01/02	2290	Influenza A virus (A/American wigeon/Washington/196336/2015(H5N1))			c
KU201855	Avian	3	H5N1	USA	2015/01/02	2182	Influenza A virus (A/American wigeon/Washington/196336/2015(H5N1))			c
KU201856	Avian	4	H5N1	USA	2015/01/02	1744	Influenza A virus (A/American wigeon/Washington/196336/2015(H5N1))			c
KU201857	Avian	5	H5N1	USA	2015/01/02	1524	Influenza A virus (A/American wigeon/Washington/196336/2015(H5N1))			c
KU201858	Avian	6	H5N1	USA	2015/01/02	1417	Influenza A virus (A/American wigeon/Washington/196336/2015(H5N1))			c
KU201859	Avian	7	H5N1	USA	2015/01/02	987	Influenza A virus (A/American wigeon/Washington/196336/2015(H5N1))			c
KU201860	Avian	8	H5N1	USA	2015/01/02	850	Influenza A virus (A/American wigeon/Washington/196336/2015(H5N1))			c
KU201861	Avian	1	H5N1	USA	2015/01/02	2287	Influenza A virus (A/American wigeon/Washington/196340/2015(H5N1))			c
KU201862	Avian	2	H5N1	USA	2015/01/02	2290	Influenza A virus (A/American wigeon/Washington/196340/2015(H5N1))			c
KU201863	Avian	3	H5N1	USA	2015/01/02	2182	Influenza A virus (A/American wigeon/Washington/196340/2015(H5N1))			c
KU201864	Avian	4	H5N1	USA	2015/01/02	1744	Influenza A virus (A/American wigeon/Washington/196340/2015(H5N1))			c
KU201865	Avian	5	H5N1	USA	2015/01/02	1524	Influenza A virus (A/American wigeon/Washington/196340/2015(H5N1))			c
KU201866	Avian	6	H5N1	USA	2015/01/02	1413	Influenza A virus (A/American wigeon/Washington/196340/2015(H5N1))			c
KU201867	Avian	7	H5N1	USA	2015/01/02	987	Influenza A virus (A/American wigeon/Washington/196340/2015(H5N1))			c
KU201868	Avian	8	H5N1	USA	2015/01/02	850	Influenza A virus (A/American wigeon/Washington/196340/2015(H5N1))			c
KU201941	Avian	1	H5N2	USA	2015/03/13	2287	Influenza A virus (A/Canada goose/Kansas/197850/2015(H5N2))			c
KU201942	Avian	2	H5N2	USA	2015/03/13	2290	Influenza A virus (A/Canada goose/Kansas/197850/2015(H5N2))			c
KU201943	Avian	4	H5N2	USA	2015/03/13	1744	Influenza A virus (A/Canada goose/Kansas/197850/2015(H5N2))			c
KU201944	Avian	5	H5N2	USA	2015/03/13	1524	Influenza A virus (A/Canada goose/Kansas/197850/2015(H5N2))			c
KU201945	Avian	6	H5N2	USA	2015/03/13	1426	Influenza A virus (A/Canada goose/Kansas/197850/2015(H5N2))			c
KU201946	Avian	7	H5N2	USA	2015/03/13	987	Influenza A virus (A/Canada goose/Kansas/197850/2015(H5N2))			c
KU201947	Avian	8	H5N2	USA	2015/03/13	850	Influenza A virus (A/Canada goose/Kansas/197850/2015(H5N2))			c
KU201741	Avian	1	H5N8	USA	2015/01/18	2280	Influenza A virus (A/Canada goose/Oregon/AH0012452/2015(H5N8))			c
KU201742	Avian	2	H5N8	USA	2015/01/18	2274	Influenza A virus (A/Canada goose/Oregon/AH0012452/2015(H5N8))			c
KU201743	Avian	3	H5N8	USA	2015/01/18	2151	Influenza A virus (A/Canada goose/Oregon/AH0012452/2015(H5N8))			c
KU201744	Avian	4	H5N8	USA	2015/01/18	1704	Influenza A virus (A/Canada goose/Oregon/AH0012452/2015(H5N8))			c
KU201745	Avian	5	H5N8	USA	2015/01/18	1497	Influenza A virus (A/Canada goose/Oregon/AH0012452/2015(H5N8))			c
KU201746	Avian	6	H5N8	USA	2015/01/18	1413	Influenza A virus (A/Canada goose/Oregon/AH0012452/2015(H5N8))			c
KU201747	Avian	7	H5N8	USA	2015/01/18	982	Influenza A virus (A/Canada goose/Oregon/AH0012452/2015(H5N8))			c
KU201748	Avian	8	H5N8	USA	2015/01/18	838	Influenza A virus (A/Canada goose/Oregon/AH0012452/2015(H5N8))			c
KU201917	Avian	1	H5N2	USA	2014/12/30	2287	Influenza A virus (A/Canada goose/Washington/197619/2014(H5N2))			c
KU201918	Avian	2	H5N2	USA	2014/12/30	2290	Influenza A virus (A/Canada goose/Washington/197619/2014(H5N2))			c
KU201919	Avian	3	H5N2	USA	2014/12/30	2182	Influenza A virus (A/Canada goose/Washington/197619/2014(H5N2))			c
KU201920	Avian	4	H5N2	USA	2014/12/30	1744	Influenza A virus (A/Canada goose/Washington/197619/2014(H5N2))			c
KU201921	Avian	5	H5N2	USA	2014/12/30	1524	Influenza A virus (A/Canada goose/Washington/197619/2014(H5N2))			c
KU201922	Avian	6	H5N2	USA	2014/12/30	1426	Influenza A virus (A/Canada goose/Washington/197619/2014(H5N2))			c
KU201923	Avian	7	H5N2	USA	2014/12/30	987	Influenza A virus (A/Canada goose/Washington/197619/2014(H5N2))			c
KU201924	Avian	8	H5N2	USA	2014/12/30	850	Influenza A virus (A/Canada goose/Washington/197619/2014(H5N2))			c
KU201925	Avian	1	H5N2	USA	2015/04/14	2287	Influenza A virus (A/Cooper's hawk/Minnesota/198225/2015(H5N2))			c
KU201926	Avian	2	H5N2	USA	2015/04/14	2290	Influenza A virus (A/Cooper's hawk/Minnesota/198225/2015(H5N2))			c
KU201927	Avian	3	H5N2	USA	2015/04/14	2182	Influenza A virus (A/Cooper's hawk/Minnesota/198225/2015(H5N2))			c
KU201928	Avian	4	H5N2	USA	2015/04/14	1744	Influenza A virus (A/Cooper's hawk/Minnesota/198225/2015(H5N2))			c
KU201929	Avian	5	H5N2	USA	2015/04/14	1524	Influenza A virus (A/Cooper's hawk/Minnesota/198225/2015(H5N2))			c
KU201930	Avian	6	H5N2	USA	2015/04/14	1426	Influenza A virus (A/Cooper's hawk/Minnesota/198225/2015(H5N2))			c
KU201931	Avian	7	H5N2	USA	2015/04/14	987	Influenza A virus (A/Cooper's hawk/Minnesota/198225/2015(H5N2))			c
KU201932	Avian	8	H5N2	USA	2015/04/14	850	Influenza A virus (A/Cooper's hawk/Minnesota/198225/2015(H5N2))			c

KU201701	Avian	1	H5N2	USA	2015/01/12	2287	Influenza A virus (A/Northern pintail/Oregon/AH0003871/2015(H5N2))			c
KU201702	Avian	2	H5N2	USA	2015/01/12	2290	Influenza A virus (A/Northern pintail/Oregon/AH0003871/2015(H5N2))			c
KU201703	Avian	3	H5N2	USA	2015/01/12	2182	Influenza A virus (A/Northern pintail/Oregon/AH0003871/2015(H5N2))			c
KU201704	Avian	4	H5N2	USA	2015/01/12	1744	Influenza A virus (A/Northern pintail/Oregon/AH0003871/2015(H5N2))			c
KU201705	Avian	5	H5N2	USA	2015/01/12	1524	Influenza A virus (A/Northern pintail/Oregon/AH0003871/2015(H5N2))			c
KU201706	Avian	6	H5N2	USA	2015/01/12	1426	Influenza A virus (A/Northern pintail/Oregon/AH0003871/2015(H5N2))			c
KU201707	Avian	7	H5N2	USA	2015/01/12	987	Influenza A virus (A/Northern pintail/Oregon/AH0003871/2015(H5N2))			c
KU201708	Avian	8	H5N2	USA	2015/01/12	850	Influenza A virus (A/Northern pintail/Oregon/AH0003871/2015(H5N2))			c
KU201629	Avian	1	H5N2	USA	2015/01/05	2287	Influenza A virus (A/Northern pintail/Oregon/AH0003967/2015(H5N2))			c
KU201630	Avian	2	H5N2	USA	2015/01/05	2290	Influenza A virus (A/Northern pintail/Oregon/AH0003967/2015(H5N2))			c
KU201631	Avian	3	H5N2	USA	2015/01/05	2182	Influenza A virus (A/Northern pintail/Oregon/AH0003967/2015(H5N2))			c
KU201632	Avian	4	H5N2	USA	2015/01/05	1744	Influenza A virus (A/Northern pintail/Oregon/AH0003967/2015(H5N2))			c
KU201633	Avian	5	H5N2	USA	2015/01/05	1524	Influenza A virus (A/Northern pintail/Oregon/AH0003967/2015(H5N2))			c
KU201634	Avian	6	H5N2	USA	2015/01/05	1426	Influenza A virus (A/Northern pintail/Oregon/AH0003967/2015(H5N2))			c
KU201635	Avian	7	H5N2	USA	2015/01/05	987	Influenza A virus (A/Northern pintail/Oregon/AH0003967/2015(H5N2))			c
KU201636	Avian	8	H5N2	USA	2015/01/05	850	Influenza A virus (A/Northern pintail/Oregon/AH0003967/2015(H5N2))			c
KU201805	Avian	1	H5N2	USA	2014/12/23	2287	Influenza A virus (A/Northern pintail/Washington/195365/2014(H5N2))			c
KU201806	Avian	2	H5N2	USA	2014/12/23	2290	Influenza A virus (A/Northern pintail/Washington/195365/2014(H5N2))			c
KU201807	Avian	3	H5N2	USA	2014/12/23	2182	Influenza A virus (A/Northern pintail/Washington/195365/2014(H5N2))			c
KU201808	Avian	4	H5N2	USA	2014/12/23	1744	Influenza A virus (A/Northern pintail/Washington/195365/2014(H5N2))			c
KU201809	Avian	5	H5N2	USA	2014/12/23	1524	Influenza A virus (A/Northern pintail/Washington/195365/2014(H5N2))			c
KU201810	Avian	6	H5N2	USA	2014/12/23	1426	Influenza A virus (A/Northern pintail/Washington/195365/2014(H5N2))			c
KU201811	Avian	7	H5N2	USA	2014/12/23	987	Influenza A virus (A/Northern pintail/Washington/195365/2014(H5N2))			c
KU201812	Avian	8	H5N2	USA	2014/12/23	850	Influenza A virus (A/Northern pintail/Washington/195365/2014(H5N2))			c
KU201837	Avian	1	H5N8	USA	2014/12/29	2280	Influenza A virus (A/Northern pintail/Washington/196271/2014(H5N8))			c
KU201838	Avian	2	H5N8	USA	2014/12/29	2277	Influenza A virus (A/Northern pintail/Washington/196271/2014(H5N8))			c
KU201839	Avian	3	H5N8	USA	2014/12/29	2151	Influenza A virus (A/Northern pintail/Washington/196271/2014(H5N8))			c
KU201840	Avian	4	H5N8	USA	2014/12/29	1704	Influenza A virus (A/Northern pintail/Washington/196271/2014(H5N8))			c
KU201841	Avian	5	H5N8	USA	2014/12/29	1497	Influenza A virus (A/Northern pintail/Washington/196271/2014(H5N8))			c
KU201842	Avian	6	H5N8	USA	2014/12/29	1413	Influenza A virus (A/Northern pintail/Washington/196271/2014(H5N8))			c
KU201843	Avian	7	H5N8	USA	2014/12/29	982	Influenza A virus (A/Northern pintail/Washington/196271/2014(H5N8))			c
KU201844	Avian	8	H5N8	USA	2014/12/29	838	Influenza A virus (A/Northern pintail/Washington/196271/2014(H5N8))			c
KU201661	Avian	1	H5N2	USA	2015/01/03	2287	Influenza A virus (A/Northern shoveler/Oregon/AH0007332/2015(H5N2))			c
KU201662	Avian	2	H5N2	USA	2015/01/03	2290	Influenza A virus (A/Northern shoveler/Oregon/AH0007332/2015(H5N2))			c
KU201663	Avian	3	H5N2	USA	2015/01/03	2182	Influenza A virus (A/Northern shoveler/Oregon/AH0007332/2015(H5N2))			c
KU201664	Avian	4	H5N2	USA	2015/01/03	1744	Influenza A virus (A/Northern shoveler/Oregon/AH0007332/2015(H5N2))			c
KU201665	Avian	5	H5N2	USA	2015/01/03	1524	Influenza A virus (A/Northern shoveler/Oregon/AH0007332/2015(H5N2))			c
KU201666	Avian	6	H5N2	USA	2015/01/03	1426	Influenza A virus (A/Northern shoveler/Oregon/AH0007332/2015(H5N2))			c
KU201667	Avian	7	H5N2	USA	2015/01/03	987	Influenza A virus (A/Northern shoveler/Oregon/AH0007332/2015(H5N2))			c
KU201668	Avian	8	H5N2	USA	2015/01/03	850	Influenza A virus (A/Northern shoveler/Oregon/AH0007332/2015(H5N2))			c
KU201669	Avian	1	H5N2	USA	2015/01/03	2287	Influenza A virus (A/Northern shoveler/Oregon/AH0007337/2015(H5N2))			c
KU201670	Avian	2	H5N2	USA	2015/01/03	2290	Influenza A virus (A/Northern shoveler/Oregon/AH0007337/2015(H5N2))			c
KU201671	Avian	3	H5N2	USA	2015/01/03	2182	Influenza A virus (A/Northern shoveler/Oregon/AH0007337/2015(H5N2))			c
KU201672	Avian	4	H5N2	USA	2015/01/03	1744	Influenza A virus (A/Northern shoveler/Oregon/AH0007337/2015(H5N2))			c
KU201673	Avian	5	H5N2	USA	2015/01/03	1524	Influenza A virus (A/Northern shoveler/Oregon/AH0007337/2015(H5N2))			c
KU201674	Avian	6	H5N2	USA	2015/01/03	1426	Influenza A virus (A/Northern shoveler/Oregon/AH0007337/2015(H5N2))			c
KU201675	Avian	7	H5N2	USA	2015/01/03	987	Influenza A virus (A/Northern shoveler/Oregon/AH0007337/2015(H5N2))			c
KU201676	Avian	8	H5N2	USA	2015/01/03	850	Influenza A virus (A/Northern shoveler/Oregon/AH0007337/2015(H5N2))			c
KU201677	Avian	1	H5N2	USA	2015/01/03	2287	Influenza A virus (A/Northern shoveler/Oregon/AH0007339/2015(H5N2))			c
KU201678	Avian	2	H5N2	USA	2015/01/03	2290	Influenza A virus (A/Northern shoveler/Oregon/AH0007339/2015(H5N2))			c
KU201679	Avian	3	H5N2	USA	2015/01/03	2182	Influenza A virus (A/Northern shoveler/Oregon/AH0007339/2015(H5N2))			c
KU201680	Avian	4	H5N2	USA	2015/01/03	1744	Influenza A virus (A/Northern shoveler/Oregon/AH0007339/2015(H5N2))			c
KU201681	Avian	5	H5N2	USA	2015/01/03	1524	Influenza A virus (A/Northern shoveler/Oregon/AH0007339/2015(H5N2))			c
KU201682	Avian	6	H5N2	USA	2015/01/03	1426	Influenza A virus (A/Northern shoveler/Oregon/AH0007339/2015(H5N2))			c
KU201683	Avian	7	H5N2	USA	2015/01/03	987	Influenza A virus (A/Northern shoveler/Oregon/AH0007339/2015(H5N2))			c
KU201684	Avian	8	H5N2	USA	2015/01/03	850	Influenza A virus (A/Northern shoveler/Oregon/AH0007339/2015(H5N2))			c

KU201797	Avian	1	H5N8	USA	2015/01/20	2287	Influenza A virus (A/bald eagle/Idaho/15-002892-2/2015(H5N8))			c
KU201798	Avian	2	H5N8	USA	2015/01/20	2290	Influenza A virus (A/bald eagle/Idaho/15-002892-2/2015(H5N8))			c
KU201799	Avian	3	H5N8	USA	2015/01/20	2182	Influenza A virus (A/bald eagle/Idaho/15-002892-2/2015(H5N8))			c
KU201800	Avian	4	H5N8	USA	2015/01/20	1744	Influenza A virus (A/bald eagle/Idaho/15-002892-2/2015(H5N8))			c
KU201801	Avian	5	H5N8	USA	2015/01/20	1560	Influenza A virus (A/bald eagle/Idaho/15-002892-2/2015(H5N8))			c
KU201802	Avian	6	H5N8	USA	2015/01/20	1427	Influenza A virus (A/bald eagle/Idaho/15-002892-2/2015(H5N8))			c
KU201803	Avian	7	H5N8	USA	2015/01/20	987	Influenza A virus (A/bald eagle/Idaho/15-002892-2/2015(H5N8))			c
KU201804	Avian	8	H5N8	USA	2015/01/20	885	Influenza A virus (A/bald eagle/Idaho/15-002892-2/2015(H5N8))			c
KU201789	Avian	1	H5N8	USA	2015/02/06	2287	Influenza A virus (A/chicken/California/15-004912/2015(H5N8))			c
KU201790	Avian	2	H5N8	USA	2015/02/06	2290	Influenza A virus (A/chicken/California/15-004912/2015(H5N8))			c
KU201791	Avian	3	H5N8	USA	2015/02/06	2182	Influenza A virus (A/chicken/California/15-004912/2015(H5N8))			c
KU201792	Avian	4	H5N8	USA	2015/02/06	1744	Influenza A virus (A/chicken/California/15-004912/2015(H5N8))			c
KU201793	Avian	5	H5N8	USA	2015/02/06	1524	Influenza A virus (A/chicken/California/15-004912/2015(H5N8))			c
KU201794	Avian	6	H5N8	USA	2015/02/06	1427	Influenza A virus (A/chicken/California/15-004912/2015(H5N8))			c
KU201795	Avian	7	H5N8	USA	2015/02/06	987	Influenza A virus (A/chicken/California/15-004912/2015(H5N8))			c
KU201796	Avian	8	H5N8	USA	2015/02/06	850	Influenza A virus (A/chicken/California/15-004912/2015(H5N8))			c
KU201765	Avian	1	H5N8	USA	2014/12/22	2280	Influenza A virus (A/mallard/Idaho/AH0005954/2014(H5N8))			c
KU201766	Avian	2	H5N8	USA	2014/12/22	2277	Influenza A virus (A/mallard/Idaho/AH0005954/2014(H5N8))			c
KU201767	Avian	3	H5N8	USA	2014/12/22	2151	Influenza A virus (A/mallard/Idaho/AH0005954/2014(H5N8))			c
KU201768	Avian	4	H5N8	USA	2014/12/22	1704	Influenza A virus (A/mallard/Idaho/AH0005954/2014(H5N8))			c
KU201769	Avian	5	H5N8	USA	2014/12/22	1497	Influenza A virus (A/mallard/Idaho/AH0005954/2014(H5N8))			c
KU201770	Avian	6	H5N8	USA	2014/12/22	1413	Influenza A virus (A/mallard/Idaho/AH0005954/2014(H5N8))			c
KU201771	Avian	7	H5N8	USA	2014/12/22	982	Influenza A virus (A/mallard/Idaho/AH0005954/2014(H5N8))			c
KU201772	Avian	8	H5N8	USA	2014/12/22	838	Influenza A virus (A/mallard/Idaho/AH0005954/2014(H5N8))			c
KU201773	Avian	1	H5N8	USA	2014/12/22	2280	Influenza A virus (A/mallard/Idaho/AH0005955/2014(H5N8))			c
KU201774	Avian	2	H5N8	USA	2014/12/22	2274	Influenza A virus (A/mallard/Idaho/AH0005955/2014(H5N8))			c
KU201775	Avian	3	H5N8	USA	2014/12/22	2151	Influenza A virus (A/mallard/Idaho/AH0005955/2014(H5N8))			c
KU201776	Avian	4	H5N8	USA	2014/12/22	1704	Influenza A virus (A/mallard/Idaho/AH0005955/2014(H5N8))			c
KU201777	Avian	5	H5N8	USA	2014/12/22	1497	Influenza A virus (A/mallard/Idaho/AH0005955/2014(H5N8))			c
KU201778	Avian	6	H5N8	USA	2014/12/22	1413	Influenza A virus (A/mallard/Idaho/AH0005955/2014(H5N8))			c
KU201779	Avian	7	H5N8	USA	2014/12/22	982	Influenza A virus (A/mallard/Idaho/AH0005955/2014(H5N8))			c
KU201780	Avian	8	H5N8	USA	2014/12/22	838	Influenza A virus (A/mallard/Idaho/AH0005955/2014(H5N8))			c
KU201709	Avian	1	H5N2	USA	2015/01/17	2280	Influenza A virus (A/mallard/Idaho/AH0007412/2015(H5N2))			c
KU201710	Avian	2	H5N2	USA	2015/01/17	2274	Influenza A virus (A/mallard/Idaho/AH0007412/2015(H5N2))			c
KU201711	Avian	3	H5N2	USA	2015/01/17	2151	Influenza A virus (A/mallard/Idaho/AH0007412/2015(H5N2))			c
KU201712	Avian	4	H5N2	USA	2015/01/17	1704	Influenza A virus (A/mallard/Idaho/AH0007412/2015(H5N2))			c
KU201713	Avian	5	H5N2	USA	2015/01/17	1497	Influenza A virus (A/mallard/Idaho/AH0007412/2015(H5N2))			c
KU201714	Avian	6	H5N2	USA	2015/01/17	1410	Influenza A virus (A/mallard/Idaho/AH0007412/2015(H5N2))			c
KU201715	Avian	7	H5N2	USA	2015/01/17	982	Influenza A virus (A/mallard/Idaho/AH0007412/2015(H5N2))			c
KU201716	Avian	8	H5N2	USA	2015/01/17	838	Influenza A virus (A/mallard/Idaho/AH0007412/2015(H5N2))			c
KU201717	Avian	1	H5N2	USA	2015/01/17	2287	Influenza A virus (A/mallard/Idaho/AH0007413/2015(H5N2))			c
KU201718	Avian	2	H5N2	USA	2015/01/17	2274	Influenza A virus (A/mallard/Idaho/AH0007413/2015(H5N2))			c
KU201719	Avian	3	H5N2	USA	2015/01/17	2182	Influenza A virus (A/mallard/Idaho/AH0007413/2015(H5N2))			c
KU201720	Avian	4	H5N2	USA	2015/01/17	1744	Influenza A virus (A/mallard/Idaho/AH0007413/2015(H5N2))			c
KU201721	Avian	5	H5N2	USA	2015/01/17	1497	Influenza A virus (A/mallard/Idaho/AH0007413/2015(H5N2))			c
KU201722	Avian	6	H5N2	USA	2015/01/17	1426	Influenza A virus (A/mallard/Idaho/AH0007413/2015(H5N2))			c
KU201723	Avian	7	H5N2	USA	2015/01/17	987	Influenza A virus (A/mallard/Idaho/AH0007413/2015(H5N2))			c
KU201724	Avian	8	H5N2	USA	2015/01/17	838	Influenza A virus (A/mallard/Idaho/AH0007413/2015(H5N2))			c
KU201685	Avian	1	H5N8	USA	2015/01/07	2287	Influenza A virus (A/mallard/Idaho/AH0008597/2015(H5N8))			c
KU201686	Avian	2	H5N8	USA	2015/01/07	2290	Influenza A virus (A/mallard/Idaho/AH0008597/2015(H5N8))			c
KU201687	Avian	3	H5N8	USA	2015/01/07	2182	Influenza A virus (A/mallard/Idaho/AH0008597/2015(H5N8))			c
KU201688	Avian	4	H5N8	USA	2015/01/07	1744	Influenza A virus (A/mallard/Idaho/AH0008597/2015(H5N8))			c
KU201689	Avian	5	H5N8	USA	2015/01/07	1524	Influenza A virus (A/mallard/Idaho/AH0008597/2015(H5N8))			c
KU201690	Avian	6	H5N8	USA	2015/01/07	1427	Influenza A virus (A/mallard/Idaho/AH0008597/2015(H5N8))			c
KU201691	Avian	7	H5N8	USA	2015/01/07	987	Influenza A virus (A/mallard/Idaho/AH0008597/2015(H5N8))			c
KU201692	Avian	8	H5N8	USA	2015/01/07	850	Influenza A virus (A/mallard/Idaho/AH0008597/2015(H5N8))			c
KU201757	Avian	1	H5N8	USA	2015/01/23	2280	Influenza A virus (A/mallard/Nevada/AH0006855/2015(H5N8))			c
KU201758	Avian	2	H5N8	USA	2015/01/23	2277	Influenza A virus (A/mallard/Nevada/AH0006855/2015(H5N8))			c
KU201759	Avian	3	H5N8	USA	2015/01/23	2151	Influenza A virus (A/mallard/Nevada/AH0006855/2015(H5N8))			c
KU201760	Avian	4	H5N8	USA	2015/01/23	1704	Influenza A virus (A/mallard/Nevada/AH0006855/2015(H5N8))			c
KU201761	Avian	5	H5N8	USA	2015/01/23	1497	Influenza A virus (A/mallard/Nevada/AH0006855/2015(H5N8))			c
KU201762	Avian	6	H5N8	USA	2015/01/23	1413	Influenza A virus (A/mallard/Nevada/AH0006855/2015(H5N8))			c
KU201763	Avian	7	H5N8	USA	2015/01/23	982	Influenza A virus (A/mallard/Nevada/AH0006855/2015(H5N8))			c
KU201764	Avian	8	H5N8	USA	2015/01/23	838	Influenza A virus (A/mallard/Nevada/AH0006855/2015(H5N8))			c
KU201869	Avian	1	H5N8	USA	2014/12/24	2287	Influenza A virus (A/mallard/Oregon/195536/2014(H5N8))			c
KU201870	Avian	2	H5N8	USA	2014/12/24	2290	Influenza A virus (A/mallard/Oregon/195536/2014(H5N8))			c
KU201871	Avian	3	H5N8	USA	2014/12/24	2182	Influenza A virus (A/mallard/Oregon/195536/2014(H5N8))			c
KU201872	Avian	4	H5N8	USA	2014/12/24	1744	Influenza A virus (A/mallard/Oregon/195536/2014(H5N8))			c
KU201873	Avian	5	H5N8	USA	2014/12/24	1524	Influenza A virus (A/mallard/Oregon/195536/2014(H5N8))			c
KU201874	Avian	6	H5N8	USA	2014/12/24	1427	Influenza A virus (A/mallard/Oregon/195536/2014(H5N8))			c
KU201875	Avian	7	H5N8	USA	2014/12/24	987	Influenza A virus (A/mallard/Oregon/195536/2014(H5N8))			c
KU201876	Avian	8	H5N8	USA	2014/12/24	850	Influenza A virus (A/mallard/Oregon/195536/2014(H5N8))			c
KU201813	Avian	1	H5N2	USA	2014/12/22	2287	Influenza A virus (A/mallard/Oregon/195547/2014(H5N2))			c
KU201814	Avian	2	H5N2	USA	2014/12/22	2290	Influenza A virus (A/mallard/Oregon/195547/2014(H5N2))			c
KU201815	Avian	3	H5N2	USA	2014/12/22	2182	Influenza A virus (A/mallard/Oregon/195547/2014(H5N2))			c
KU201816	Avian	4	H5N2	USA	2014/12/22	1744	Influenza A virus (A/mallard/Oregon/195547/2014(H5N2))			c
KU201817	Avian	5	H5N2	USA	2014/12/22	1524	Influenza A virus (A/mallard/Oregon/195547/2014(H5N2))			c
KU201818	Avian	6	H5N2	USA	2014/12/22	1426	Influenza A virus (A/mallard/Oregon/195547/2014(H5N2))			c
KU201819	Avian	7	H5N2	USA	2014/12/22	987	Influenza A virus (A/mallard/Oregon/195547/2014(H5N2))			c
KU201820	Avian	8	H5N2	USA	2014/12/22	850	Influenza A virus (A/mallard/Oregon/195547/2014(H5N2))			c
KU201781	Avian	1	H5N2	USA	2014/12/20	2287	Influenza A virus (A/mallard/Oregon/AH0003821/2014(H5N2))			c
KU201782	Avian	2	H5N2	USA	2014/12/20	2290	Influenza A virus (A/mallard/Oregon/AH0003821/2014(H5N2))			c
KU201783	Avian	3	H5N2	USA	2014/12/20	2182	Influenza A virus (A/mallard/Oregon/AH0003821/2014(H5N2))			c
KU201784	Avian	4	H5N2	USA	2014/12/20	1744	Influenza A virus (A/mallard/Oregon/AH0003821/2014(H5N2))			c
KU201785	Avian	5	H5N2	USA	2014/12/20	1524	Influenza A virus (A/mallard/Oregon/AH0003821/2014(H5N2))			c
KU201786	Avian	6	H5N2	USA	2014/12/20	1426	Influenza A virus (A/mallard/Oregon/AH0003821/2014(H5N2))			c
KU201787	Avian	7	H5N2	USA	2014/12/20	987	Influenza A virus (A/mallard/Oregon/AH0003821/2014(H5N2))			c
KU201788	Avian	8	H5N2	USA	2014/12/20	850	Influenza A virus (A/mallard/Oregon/AH0003821/2014(H5N2))			c
KU201621	Avian	1	H5N2	USA	2015/01/05	2287	Influenza A virus (A/mallard/Oregon/AH0003952/2015(H5N2))			c
KU201622	Avian	2	H5N2	USA	2015/01/05	2290	Influenza A virus (A/mallard/Oregon/AH0003952/2015(H5N2))			c
KU201623	Avian	3	H5N2	USA	2015/01/05	2182	Influenza A virus (A/mallard/Oregon/AH0003952/2015(H5N2))			c
KU201624	Avian	4	H5N2	USA	2015/01/05	1744	Influenza A virus (A/mallard/Oregon/AH0003952/2015(H5N2))			c
KU201625	Avian	5	H5N2	USA	2015/01/05	1524	Influenza A virus (A/mallard/Oregon/AH0003952/2015(H5N2))			c
KU201626	Avian	6	H5N2	USA	2015/01/05	1426	Influenza A virus (A/mallard/Oregon/AH0003952/2015(H5N2))			c
KU201627	Avian	7	H5N2	USA	2015/01/05	987	Influenza A virus (A/mallard/Oregon/AH0003952/2015(H5N2))			c
KU201628	Avian	8	H5N2	USA	2015/01/05	850	Influenza A virus (A/mallard/Oregon/AH0003952/2015(H5N2))			c
KU201693	Avian	1	H5N2	USA	2015/01/07	2287	Influenza A virus (A/mallard/Oregon/AH0008887/2015(H5N2))			c
KU201694	Avian	2	H5N2	USA	2015/01/07	2290	Influenza A virus (A/mallard/Oregon/AH0008887/2015(H5N2))			c
KU201695	Avian	3	H5N2	USA	2015/01/07	2182	Influenza A virus (A/mallard/Oregon/AH0008887/2015(H5N2))			c
KU201696	Avian	4	H5N2	USA	2015/01/07	1744	Influenza A virus (A/mallard/Oregon/AH0008887/2015(H5N2))			c
KU201697	Avian	5	H5N2	USA	2015/01/07	1524	Influenza A virus (A/mallard/Oregon/AH0008887/2015(H5N2))			c
KU201698	Avian	6	H5N2	USA	2015/01/07	1426	Influenza A virus (A/mallard/Oregon/AH0008887/2015(H5N2))			c
KU201699	Avian	7	H5N2	USA	2015/01/07	987	Influenza A virus (A/mallard/Oregon/AH0008887/2015(H5N2))			c
KU201700	Avian	8	H5N2	USA	2015/01/07	850	Influenza A virus (A/mallard/Oregon/AH0008887/2015(H5N2))			c
KU201893	Avian	1	H5N2	USA	2014/12/08	2287	Influenza A virus (A/mallard/Washington/195246/2014(H5N2))			c
KU201894	Avian	2	H5N2	USA	2014/12/08	2290	Influenza A virus (A/mallard/Washington/195246/2014(H5N2))			c
KU201895	Avian	3	H5N2	USA	2014/12/08	2182	Influenza A virus (A/mallard/Washington/195246/2014(H5N2))			c
KU201896	Avian	4	H5N2	USA	2014/12/08	1744	Influenza A virus (A/mallard/Washington/195246/2014(H5N2))			c
KU201897	Avian	5	H5N2	USA	2014/12/08	1524	Influenza A virus (A/mallard/Washington/195246/2014(H5N2))			c
KU201898	Avian	6	H5N2	USA	2014/12/08	1426	Influenza A virus (A/mallard/Washington/195246/2014(H5N2))			c
KU201899	Avian	7	H5N2	USA	2014/12/08	987	Influenza A virus (A/mallard/Washington/195246/2014(H5N2))			c
KU201900	Avian	8	H5N2	USA	2014/12/08	850	Influenza A virus (A/mallard/Washington/195246/2014(H5N2))			c
KU201909	Avian	1	H5N2	USA	2014/12/23	2287	Influenza A virus (A/mallard/Washington/195810/2014(H5N2))			c
KU201910	Avian	2	H5N2	USA	2014/12/23	2290	Influenza A virus (A/mallard/Washington/195810/2014(H5N2))			c
KU201911	Avian	3	H5N2	USA	2014/12/23	2182	Influenza A virus (A/mallard/Washington/195810/2014(H5N2))			c
KU201912	Avian	4	H5N2	USA	2014/12/23	1744	Influenza A virus (A/mallard/Washington/195810/2014(H5N2))			c
KU201913	Avian	5	H5N2	USA	2014/12/23	1524	Influenza A virus (A/mallard/Washington/195810/2014(H5N2))			c
KU201914	Avian	6	H5N2	USA	2014/12/23	1426	Influenza A virus (A/mallard/Washington/195810/2014(H5N2))			c
KU201915	Avian	7	H5N2	USA	2014/12/23	987	Influenza A virus (A/mallard/Washington/195810/2014(H5N2))			c
KU201916	Avian	8	H5N2	USA	2014/12/23	850	Influenza A virus (A/mallard/Washington/195810/2014(H5N2))			c
KU201829	Avian	1	H5N2	USA	2015/01/01	2287	Influenza A virus (A/mallard/Washington/196262/2015(H5N2))			c
KU201830	Avian	2	H5N2	USA	2015/01/01	2290	Influenza A virus (A/mallard/Washington/196262/2015(H5N2))			c
KU201831	Avian	3	H5N2	USA	2015/01/01	2182	Influenza A virus (A/mallard/Washington/196262/2015(H5N2))			c
KU201832	Avian	4	H5N2	USA	2015/01/01	1744	Influenza A virus (A/mallard/Washington/196262/2015(H5N2))			c
KU201833	Avian	5	H5N2	USA	2015/01/01	1524	Influenza A virus (A/mallard/Washington/196262/2015(H5N2))			c
KU201834	Avian	6	H5N2	USA	2015/01/01	1426	Influenza A virus (A/mallard/Washington/196262/2015(H5N2))			c
KU201835	Avian	7	H5N2	USA	2015/01/01	987	Influenza A virus (A/mallard/Washington/196262/2015(H5N2))			c
KU201836	Avian	8	H5N2	USA	2015/01/01	850	Influenza A virus (A/mallard/Washington/196262/2015(H5N2))			c
KU201845	Avian	1	H5N2	USA	2015/01/10	2280	Influenza A virus (A/mallard/Washington/196865/2015(H5N2))			c
KU201846	Avian	2	H5N2	USA	2015/01/10	2274	Influenza A virus (A/mallard/Washington/196865/2015(H5N2))			c
KU201847	Avian	3	H5N2	USA	2015/01/10	2151	Influenza A virus (A/mallard/Washington/196865/2015(H5N2))			c
KU201848	Avian	4	H5N2	USA	2015/01/10	1704	Influenza A virus (A/mallard/Washington/196865/2015(H5N2))			c
KU201849	Avian	5	H5N2	USA	2015/01/10	1497	Influenza A virus (A/mallard/Washington/196865/2015(H5N2))			c
KU201850	Avian	6	H5N2	USA	2015/01/10	1410	Influenza A virus (A/mallard/Washington/196865/2015(H5N2))			c
KU201851	Avian	7	H5N2	USA	2015/01/10	982	Influenza A virus (A/mallard/Washington/196865/2015(H5N2))			c
KU201852	Avian	8	H5N2	USA	2015/01/10	838	Influenza A virus (A/mallard/Washington/196865/2015(H5N2))			c
KU201901	Avian	1	H5N8	USA	2014/12/29	2287	Influenza A virus (A/peregrine falcon/Washington/196426/2014(H5N8))			c
KU201902	Avian	2	H5N8	USA	2014/12/29	2290	Influenza A virus (A/peregrine falcon/Washington/196426/2014(H5N8))			c
KU201903	Avian	3	H5N8	USA	2014/12/29	2182	Influenza A virus (A/peregrine falcon/Washington/196426/2014(H5N8))			c
KU201904	Avian	4	H5N8	USA	2014/12/29	1744	Influenza A virus (A/peregrine falcon/Washington/196426/2014(H5N8))			c
KU201905	Avian	5	H5N8	USA	2014/12/29	1524	Influenza A virus (A/peregrine falcon/Washington/196426/2014(H5N8))			c
KU201906	Avian	6	H5N8	USA	2014/12/29	1427	Influenza A virus (A/peregrine falcon/Washington/196426/2014(H5N8))			c
KU201907	Avian	7	H5N8	USA	2014/12/29	987	Influenza A virus (A/peregrine falcon/Washington/196426/2014(H5N8))			c
KU201908	Avian	8	H5N8	USA	2014/12/29	850	Influenza A virus (A/peregrine falcon/Washington/196426/2014(H5N8))			c
KU201605	Avian	1	H5N2	USA	2015/03	2287	Influenza A virus (A/snow goose/Missouri/15-011246-1/2015(H5N2))			c
KU201606	Avian	2	H5N2	USA	2015/03	2290	Influenza A virus (A/snow goose/Missouri/15-011246-1/2015(H5N2))			c
KU201607	Avian	3	H5N2	USA	2015/03	2182	Influenza A virus (A/snow goose/Missouri/15-011246-1/2015(H5N2))			c
KU201608	Avian	4	H5N2	USA	2015/03	1744	Influenza A virus (A/snow goose/Missouri/15-011246-1/2015(H5N2))			c
KU201609	Avian	5	H5N2	USA	2015/03	1524	Influenza A virus (A/snow goose/Missouri/15-011246-1/2015(H5N2))			c
KU201610	Avian	6	H5N2	USA	2015/03	1426	Influenza A virus (A/snow goose/Missouri/15-011246-1/2015(H5N2))			c
KU201611	Avian	7	H5N2	USA	2015/03	987	Influenza A virus (A/snow goose/Missouri/15-011246-1/2015(H5N2))			c
KU201612	Avian	8	H5N2	USA	2015/03	850	Influenza A virus (A/snow goose/Missouri/15-011246-1/2015(H5N2))			c
KU201933	Avian	1	H5N2	USA	2015/04/13	2287	Influenza A virus (A/snowy owl/Wisconsin/198399/2015(H5N2))			c
KU201934	Avian	2	H5N2	USA	2015/04/13	2290	Influenza A virus (A/snowy owl/Wisconsin/198399/2015(H5N2))			c
KU201935	Avian	3	H5N2	USA	2015/04/13	2182	Influenza A virus (A/snowy owl/Wisconsin/198399/2015(H5N2))			c
KU201936	Avian	4	H5N2	USA	2015/04/13	1744	Influenza A virus (A/snowy owl/Wisconsin/198399/2015(H5N2))			c
KU201937	Avian	5	H5N2	USA	2015/04/13	1524	Influenza A virus (A/snowy owl/Wisconsin/198399/2015(H5N2))			c
KU201938	Avian	6	H5N2	USA	2015/04/13	1426	Influenza A virus (A/snowy owl/Wisconsin/198399/2015(H5N2))			c
KU201939	Avian	7	H5N2	USA	2015/04/13	987	Influenza A virus (A/snowy owl/Wisconsin/198399/2015(H5N2))			c
KU201940	Avian	8	H5N2	USA	2015/04/13	850	Influenza A virus (A/snowy owl/Wisconsin/198399/2015(H5N2))			c

KU201637	Avian	1	H5N2	USA	2015/01/03	2287	Influenza A virus (A/wood duck/Oregon/AH0007244/2015(H5N2))			c
KU201638	Avian	2	H5N2	USA	2015/01/03	2290	Influenza A virus (A/wood duck/Oregon/AH0007244/2015(H5N2))			c
KU201639	Avian	3	H5N2	USA	2015/01/03	2182	Influenza A virus (A/wood duck/Oregon/AH0007244/2015(H5N2))			c
KU201640	Avian	4	H5N2	USA	2015/01/03	1744	Influenza A virus (A/wood duck/Oregon/AH0007244/2015(H5N2))			c
KU201641	Avian	5	H5N2	USA	2015/01/03	1524	Influenza A virus (A/wood duck/Oregon/AH0007244/2015(H5N2))			c
KU201642	Avian	6	H5N2	USA	2015/01/03	1426	Influenza A virus (A/wood duck/Oregon/AH0007244/2015(H5N2))			c
KU201643	Avian	7	H5N2	USA	2015/01/03	987	Influenza A virus (A/wood duck/Oregon/AH0007244/2015(H5N2))			c
KU201644	Avian	8	H5N2	USA	2015/01/03	850	Influenza A virus (A/wood duck/Oregon/AH0007244/2015(H5N2))			c
KU201645	Avian	1	H5N2	USA	2015/01/03	2287	Influenza A virus (A/wood duck/Oregon/AH0007257/2015(H5N2))			c
KU201646	Avian	2	H5N2	USA	2015/01/03	2274	Influenza A virus (A/wood duck/Oregon/AH0007257/2015(H5N2))			c
KU201647	Avian	3	H5N2	USA	2015/01/03	2182	Influenza A virus (A/wood duck/Oregon/AH0007257/2015(H5N2))			c
KU201648	Avian	4	H5N2	USA	2015/01/03	1744	Influenza A virus (A/wood duck/Oregon/AH0007257/2015(H5N2))			c
KU201649	Avian	5	H5N2	USA	2015/01/03	1497	Influenza A virus (A/wood duck/Oregon/AH0007257/2015(H5N2))			c
KU201650	Avian	6	H5N2	USA	2015/01/03	1426	Influenza A virus (A/wood duck/Oregon/AH0007257/2015(H5N2))			c
KU201651	Avian	7	H5N2	USA	2015/01/03	982	Influenza A virus (A/wood duck/Oregon/AH0007257/2015(H5N2))			c
KU201652	Avian	8	H5N2	USA	2015/01/03	838	Influenza A virus (A/wood duck/Oregon/AH0007257/2015(H5N2))			c
KU201653	Avian	1	H5N2	USA	2015/01/03	2287	Influenza A virus (A/wood duck/Oregon/AH0007263/2015(H5N2))			c
KU201654	Avian	2	H5N2	USA	2015/01/03	2290	Influenza A virus (A/wood duck/Oregon/AH0007263/2015(H5N2))			c
KU201655	Avian	3	H5N2	USA	2015/01/03	2182	Influenza A virus (A/wood duck/Oregon/AH0007263/2015(H5N2))			c
KU201656	Avian	4	H5N2	USA	2015/01/03	1744	Influenza A virus (A/wood duck/Oregon/AH0007263/2015(H5N2))			c
KU201657	Avian	5	H5N2	USA	2015/01/03	1524	Influenza A virus (A/wood duck/Oregon/AH0007263/2015(H5N2))			c
KU201658	Avian	6	H5N2	USA	2015/01/03	1426	Influenza A virus (A/wood duck/Oregon/AH0007263/2015(H5N2))			c
KU201659	Avian	7	H5N2	USA	2015/01/03	987	Influenza A virus (A/wood duck/Oregon/AH0007263/2015(H5N2))			c
KU201660	Avian	8	H5N2	USA	2015/01/03	850	Influenza A virus (A/wood duck/Oregon/AH0007263/2015(H5N2))			c

niman · December 24, 2015

LOCUS       KU201640                1744 bp    cRNA    linear   VRL 22-DEC-2015
DEFINITION  Influenza A virus (A/wood duck/Oregon/AH0007244/2015(H5N2)) segment
            4 hemagglutinin (HA) gene, complete cds.
ACCESSION   KU201640
VERSION     KU201640.1  GI:965569499
KEYWORDS    .
SOURCE      Influenza A virus (A/wood duck/Oregon/AH0007244/2015(H5N2))
  ORGANISM  Influenza A virus (A/wood duck/Oregon/AH0007244/2015(H5N2))
            Viruses; ssRNA viruses; ssRNA negative-strand viruses;
            Orthomyxoviridae; Influenzavirus A.
REFERENCE   1  (bases 1 to 1744)
  AUTHORS   Killian,M.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2015) Diagnostic Virology Laboratory, National
            Veterinary Services Laboratories (NVSL), USDA APHIS VS, 1920 Dayton
            Avenue, Ames, IA 50010, USA
COMMENT     GenBank Accession Numbers KU201637-KU201644 represent sequences
            from the 8 segments of Influenza A virus (A/wood
            duck/Oregon/AH0007244/2015(H5N2)).
            
            ##Assembly-Data-START##
            Assembly Method       :: SeqMan NGen v. v4
            Sequencing Technology :: Illumina; IonTorrent
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1744
                     /organism="Influenza A virus (A/wood
                     duck/Oregon/AH0007244/2015(H5N2))"
                     /mol_type="viral cRNA"
                     /strain="A/wood duck/Oregon/AH0007244/2015"
                     /serotype="H5N2"
                     /isolation_source="oropharyngeal/cloacal swab pool from
                     individual bird"
                     /host="wood duck; hunter harvest"
                     /db_xref="taxon:1763731"
                     /segment="4"
                     /country="USA: Morrow County, Oregon"
                     /collection_date="03-Jan-2015"
                     /note="NVSL 15-000946-3; EP1; Eurasian origin (EA-H5N8
                     clade 2.3.4.4)-North American reassortant"
     gene            17..1720
                     /gene="HA"
     CDS             17..1720
                     /gene="HA"
                     /function="receptor binding and fusion protein"
                     /codon_start=1
                     /product="hemagglutinin"
                     /protein_id="ALT19501.1"
                     /db_xref="GI:965569500"
                     /translation="MEKIVLLFAVISLVKSDQICIGYHANNSTKQVDTIMEKNVTVTH
                     AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA
                     NDLCYPGTLNDYEELKHLLSRINHFEKTLIIPRSSWPNHETSLGVSAACPYQGASSFF
                     RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAAEQTNLYKNPDTYVSVGT
                     STLNQRLVPKIATRSQVNGQSGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG
                     DSTIMKSEMEYGHCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR
                     NSPLRERRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG
                     VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE
                     RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPKYS
                     EEAILKREEISGVKLESIGTYQILSIYSTVASSLALAIIVAGLSLWMCSNGSLQCRIC
                     I"
     sig_peptide     17..64
                     /gene="HA"
     mat_peptide     65..1051
                     /gene="HA"
                     /product="HA1"
     mat_peptide     1052..1717
                     /gene="HA"
                     /product="HA2"
ORIGIN      
        1 ggttcaatct gtcaaaatgg agaaaatagt gcttcttttt gcagtgatta gccttgttaa
       61 aagtgatcag atttgcattg gttaccatgc aaacaactca acaaagcagg ttgacacgat
      121 aatggagaaa aacgtcactg ttacacatgc ccaagacata ctggaaaaga cacacaacgg
      181 gaagctctgc gatcttaatg gagtgaagcc cctgattcta aaggattgta gcgtagctgg
      241 gtggctcctt ggaaatccaa tgtgcgacga gttcatcagg gtaccggaat ggtcttacat
      301 cgtggagagg gctaacccag ccaacgacct ctgttaccca gggaccctca atgactatga
      361 ggaactgaaa cacctattga gcagaataaa tcattttgag aaaactctga tcatccccag
      421 gagttcttgg cccaatcatg aaacatcatt aggggtgagc gcagcatgtc cataccaggg
      481 agcatcctca tttttcagaa atgtggtatg gctcatcaaa aagaacgatg catacccgac
      541 aataaagata agctacaata ataccaatcg ggaagatctt ttgatactgt gggggattca
      601 tcattccaac aatgcagcag agcagacaaa tctctataaa aacccagaca cttatgtttc
      661 cgttgggaca tcaacattaa accagagatt ggtgccaaaa atagctacta gatcccaagt
      721 aaacgggcag agtggaagaa tggatttctt ctggacaatt ttaaaaccga atgatgcaat
      781 ccactttgag agtaatggaa atttcattgc tccagaatat gcatacaaaa ttgtcaagaa
      841 aggggactca acaattatga aaagtgaaat ggagtatggc cactgcaaca ccaaatgtca
      901 aactccaata ggggcgataa actctagcat gccattccac aatatacacc ctctcaccat
      961 cggggaatgc cccaaatacg tgaagtcaaa caaattagtc cttgcgactg ggctcagaaa
     1021 tagtcctcta agagaaagaa gaagaaaaag aggactattt ggagctatag cagggtttat
     1081 agagggagga tggcagggaa tggtagacgg ttggtatggg tatcatcata gcaatgagca
     1141 ggggagtggg tacgctgcag acaaagaatc aacccaaaag gcaatagatg gagttaccaa
     1201 taaggtcaac tcaatcattg acaaaatgaa cactcaattt gaggccgttg gaagggaatt
     1261 taataactta gaaaggagaa tagagaattt aaacaagaaa atggaagacg gattcctaga
     1321 tgtctggact tataatgctg aacttttagt tctcatggaa aatgagagaa ctctagattt
     1381 ccatgactca aatgtcaaga acctttacga caaagtccga ctacagctta gggataatgc
     1441 aaaggagctg ggtaatggtt gtttcgagtt ctatcacaaa tgtgataacg aatgtatgga
     1501 gagcgtaaga aatgggacgt atgactaccc taagtattca gaagaagcaa tattaaaaag
     1561 agaagaaata agcggagtga aattagaatc aataggaact taccagatac tgtcaattta
     1621 ttcaacagtg gcgagttccc tagcactggc aatcatagtg gctggtctat ctttatggat
     1681 gtgctctaat gggtcgttac aatgcagaat ttgcatctaa atttgtgagc tcagattgta
     1741 atta

niman · December 24, 2015

LOCUS       KU201648                1744 bp    cRNA    linear   VRL 22-DEC-2015
DEFINITION  Influenza A virus (A/wood duck/Oregon/AH0007257/2015(H5N2)) segment
            4 hemagglutinin (HA) gene, complete cds.
ACCESSION   KU201648
VERSION     KU201648.1  GI:965569468
KEYWORDS    .
SOURCE      Influenza A virus (A/wood duck/Oregon/AH0007257/2015(H5N2))
  ORGANISM  Influenza A virus (A/wood duck/Oregon/AH0007257/2015(H5N2))
            Viruses; ssRNA viruses; ssRNA negative-strand viruses;
            Orthomyxoviridae; Influenzavirus A.
REFERENCE   1  (bases 1 to 1744)
  AUTHORS   Killian,M.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2015) Diagnostic Virology Laboratory, National
            Veterinary Services Laboratories (NVSL), USDA APHIS VS, 1920 Dayton
            Avenue, Ames, IA 50010, USA
COMMENT     GenBank Accession Numbers KU201645-KU201652 represent sequences
            from the 8 segments of Influenza A virus (A/wood
            duck/Oregon/AH0007257/2015(H5N2)).
            
            ##Assembly-Data-START##
            Assembly Method       :: SeqMan NGen v. v4
            Sequencing Technology :: Illumina; IonTorrent
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1744
                     /organism="Influenza A virus (A/wood
                     duck/Oregon/AH0007257/2015(H5N2))"
                     /mol_type="viral cRNA"
                     /strain="A/wood duck/Oregon/AH0007257/2015"
                     /serotype="H5N2"
                     /isolation_source="oropharyngeal/cloacal swab pool from
                     individual bird"
                     /host="wood duck; hunter harvest"
                     /db_xref="taxon:1763732"
                     /segment="4"
                     /country="USA: Morrow County, Oregon"
                     /collection_date="03-Jan-2015"
                     /note="NVSL 15-000946-7; EP1; Eurasian origin (EA-H5N8
                     clade 2.3.4.4)-North American reassortant"
     gene            17..1720
                     /gene="HA"
     CDS             17..1720
                     /gene="HA"
                     /function="receptor binding and fusion protein"
                     /codon_start=1
                     /product="hemagglutinin"
                     /protein_id="ALT19489.1"
                     /db_xref="GI:965569469"
                     /translation="MEKIVLLFAVISLVKSDQICIGYHANNSTKQVDTIMEKNVTVTH
                     AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA
                     NDLCYPGTLNDYEELKHLLSRINHFEKTLIIPRSSWPNHETSLGVSAACPYQGASSFF
                     RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAAEQTNLYKNPDTYVSVGT
                     STLNQRLVPKIATRSQVNGQSGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG
                     DSTIMKSEMEYGHCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR
                     NSPLRERRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG
                     VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE
                     RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPKYS
                     EEAILKREEISGVKLESIGTYQILSIYSTVASSLALAIIVAGLSLWMCSNGSLQCRIC
                     I"
     sig_peptide     17..64
                     /gene="HA"
     mat_peptide     65..1051
                     /gene="HA"
                     /product="HA1"
     mat_peptide     1052..1717
                     /gene="HA"
                     /product="HA2"
ORIGIN      
        1 ggttcaatgt gacaaaatgg agaaaatagt gcttcttttt gcagtgatta gccttgttaa
       61 aagtgatcag atttgcattg gttaccatgc aaacaactca acaaagcagg ttgacacgat
      121 aatggagaaa aacgtcactg ttacacatgc ccaagacata ctggaaaaga cacacaacgg
      181 gaagctctgc gatcttaatg gagtgaagcc cctgattcta aaggattgta gcgtagctgg
      241 gtggctcctt ggaaatccaa tgtgcgacga gttcatcagg gtaccggaat ggtcttacat
      301 cgtggagagg gctaacccag ccaacgacct ctgttaccca gggaccctca atgactatga
      361 ggaactgaaa cacctattga gcagaataaa tcattttgag aaaactctga tcatccccag
      421 gagttcttgg cccaatcatg aaacatcatt aggggtgagc gcagcatgtc cataccaggg
      481 agcatcctca tttttcagaa atgtggtatg gctcatcaaa aagaacgatg catacccgac
      541 aataaagata agctacaata ataccaatcg ggaagatctt ttgatactgt gggggattca
      601 tcattccaac aatgcagcag agcagacaaa tctctataaa aacccagaca cttatgtttc
      661 cgttgggaca tcaacattaa accagagatt ggtgccaaaa atagctacta gatcccaagt
      721 aaacgggcag agtggaagaa tggatttctt ctggacaatt ttaaaaccga atgatgcaat
      781 ccactttgag agtaatggaa atttcattgc tccagaatat gcatacaaaa ttgtcaagaa
      841 aggggactca acaattatga aaagtgaaat ggagtatggc cactgcaaca ccaaatgtca
      901 aactccaata ggggcgataa actctagcat gccattccac aatatacacc ctctcaccat
      961 cggggaatgc cccaaatacg tgaagtcaaa caaattagtc cttgcgactg ggctcagaaa
     1021 tagtcctcta agagaaagaa gaagaaaaag aggactattt ggagctatag cagggtttat
     1081 agagggagga tggcagggaa tggtagacgg ttggtatggg tatcatcata gcaatgagca
     1141 ggggagtggg tacgctgcag acaaagaatc aacccaaaag gcaatagatg gagttaccaa
     1201 taaggtcaac tcaatcattg acaaaatgaa cactcaattt gaggccgttg gaagggaatt
     1261 taataactta gaaaggagaa tagagaattt aaacaagaaa atggaagacg gattcctaga
     1321 tgtctggact tataatgctg aacttttagt tctcatggaa aatgagagaa ctctagattt
     1381 ccatgactca aatgtcaaga acctttacga caaagtccga ctacagctta gggataatgc
     1441 aaaggagctg ggtaatggtt gtttcgagtt ctatcacaaa tgtgataacg aatgtatgga
     1501 gagcgtaaga aatgggacgt atgactaccc taagtattca gaagaagcaa tattaaaaag
     1561 agaagaaata agcggagtga aattagaatc aataggaact taccagatac tgtcaattta
     1621 ttcaacagtg gcgagttccc tagcactggc aatcatagtg gctggtctat ctttatggat
     1681 gtgctctaat gggtcgttac aatgcagaat ttgcatctaa atttgtgagc tcagattgta
     1741 atta

niman · December 24, 2015

LOCUS       KU201656                1744 bp    cRNA    linear   VRL 22-DEC-2015
DEFINITION  Influenza A virus (A/wood duck/Oregon/AH0007263/2015(H5N2)) segment
            4 hemagglutinin (HA) gene, complete cds.
ACCESSION   KU201656
VERSION     KU201656.1  GI:965569429
KEYWORDS    .
SOURCE      Influenza A virus (A/wood duck/Oregon/AH0007263/2015(H5N2))
  ORGANISM  Influenza A virus (A/wood duck/Oregon/AH0007263/2015(H5N2))
            Viruses; ssRNA viruses; ssRNA negative-strand viruses;
            Orthomyxoviridae; Influenzavirus A.
REFERENCE   1  (bases 1 to 1744)
  AUTHORS   Killian,M.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2015) Diagnostic Virology Laboratory, National
            Veterinary Services Laboratories (NVSL), USDA APHIS VS, 1920 Dayton
            Avenue, Ames, IA 50010, USA
COMMENT     GenBank Accession Numbers KU201653-KU201660 represent sequences
            from the 8 segments of Influenza A virus (A/wood
            duck/Oregon/AH0007263/2015(H5N2)).
            
            ##Assembly-Data-START##
            Assembly Method       :: SeqMan NGen v. v4
            Sequencing Technology :: Illumina; IonTorrent
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1744
                     /organism="Influenza A virus (A/wood
                     duck/Oregon/AH0007263/2015(H5N2))"
                     /mol_type="viral cRNA"
                     /strain="A/wood duck/Oregon/AH0007263/2015"
                     /serotype="H5N2"
                     /isolation_source="oropharyngeal/cloacal swab pool from
                     individual bird"
                     /host="wood duck; hunter harvest"
                     /db_xref="taxon:1763733"
                     /segment="4"
                     /country="USA: Morrow County, Oregon"
                     /collection_date="03-Jan-2015"
                     /note="NVSL 15-000946-8; EP1; Eurasian origin (EA-H5N8
                     clade 2.3.4.4)-North American reassortant"
     gene            17..1720
                     /gene="HA"
     CDS             17..1720
                     /gene="HA"
                     /function="receptor binding and fusion protein"
                     /codon_start=1
                     /product="hemagglutinin"
                     /protein_id="ALT19477.1"
                     /db_xref="GI:965569430"
                     /translation="MEKIVLLFAVISLVKSDQICIGYHANNSTKQVDTIMEKNVTVTH
                     AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRIPEWSYIVERANPA
                     NDLCYPGTLNDYEELKHLLSRINHFEKTLIIPRSSWPNHETSLGVSAACPYQGASSFF
                     RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAAEQTNLYKNPDTYVSVGT
                     STLNQRLVPKIATRSQVNGQSGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG
                     DSTIMKSEMEYGHCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR
                     NSPLRERRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG
                     VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE
                     RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPKYS
                     EEAILKREEISGVKLESIGTYQILSIYSTVASSLALAIIVAGLSLWMCSNGSLQCRIC
                     I"
     sig_peptide     17..64
                     /gene="HA"
     mat_peptide     65..1051
                     /gene="HA"
                     /product="HA1"
     mat_peptide     1052..1717
                     /gene="HA"
                     /product="HA2"
ORIGIN      
        1 ggttcaatct gtcaaaatgg agaaaatagt gcttcttttt gcagtgatta gccttgttaa
       61 aagtgatcag atttgcattg gttaccatgc aaacaactca acaaagcagg ttgacacgat
      121 aatggagaaa aacgtcactg ttacacatgc ccaagacata ctggaaaaga cacacaacgg
      181 gaagctctgc gatcttaatg gagtgaagcc cctgattcta aaggattgta gcgtagctgg
      241 gtggctcctt ggaaatccaa tgtgcgacga gttcatcagg ataccggaat ggtcttacat
      301 cgtggagagg gctaacccag ccaacgacct ctgttaccca gggaccctca atgactatga
      361 ggaactgaaa cacctattga gcagaataaa tcattttgag aaaactctga tcatccccag
      421 gagttcttgg cccaatcatg aaacatcatt aggggtgagc gcagcatgtc cataccaggg
      481 agcatcctca tttttcagaa atgtggtatg gctcatcaaa aagaacgatg catacccgac
      541 aataaagata agctacaata ataccaatcg ggaagatctt ttgatactgt gggggattca
      601 tcattccaac aatgcagcag agcagacaaa tctctataaa aacccagaca cttatgtttc
      661 cgttgggaca tcaacattaa accagagatt ggtgccaaaa atagctacta gatcccaagt
      721 aaacgggcag agtggaagaa tggatttctt ctggacaatt ttaaaaccga atgatgcaat
      781 ccactttgag agtaatggaa atttcattgc tccagaatat gcatacaaaa ttgtcaagaa
      841 aggggactca acaattatga aaagtgaaat ggagtatggc cactgcaaca ccaaatgtca
      901 aactccaata ggggcgataa actctagcat gccattccac aatatacacc ctctcaccat
      961 cggggaatgc cccaaatacg tgaagtcaaa caaattagtc cttgcgactg ggctcagaaa
     1021 tagtcctcta agagaaagaa gaagaaaaag aggactattt ggagctatag cagggtttat
     1081 agagggagga tggcagggaa tggtagacgg ttggtatggg tatcatcata gcaatgagca
     1141 ggggagtggg tacgctgcag acaaagaatc aacccaaaag gcaatagatg gagttaccaa
     1201 taaggtcaac tcaatcattg acaaaatgaa cactcaattt gaggccgttg gaagggaatt
     1261 taataactta gaaaggagaa tagagaattt aaacaagaaa atggaagacg gattcctaga
     1321 tgtctggact tataatgctg aacttttagt tctcatggaa aatgagagaa ctctagattt
     1381 ccatgactca aatgtcaaga acctttacga caaagtccga ctacagctta gggataatgc
     1441 aaaggagctg ggtaatggtt gtttcgagtt ctatcacaaa tgtgataacg aatgtatgga
     1501 gagcgtaaga aatgggacgt atgactaccc taagtattca gaagaagcaa tattaaaaag
     1561 agaagaaata agcggagtga aattagaatc aataggaact taccagatac tgtcaattta
     1621 ttcaacagtg gcgagttccc tagcactggc aatcatagtg gctggtctat ctttatggat
     1681 gtgctctaat gggtcgttac aatgcagaat ttgcatctaa atttgtgagc tcagattgta
     1741 atta

niman · December 24, 2015

LOCUS       KU201664                1744 bp    cRNA    linear   VRL 22-DEC-2015
DEFINITION  Influenza A virus (A/Northern shoveler/Oregon/AH0007332/2015(H5N2))
            segment 4 hemagglutinin (HA) gene, complete cds.
ACCESSION   KU201664
VERSION     KU201664.1  GI:965569394
KEYWORDS    .
SOURCE      Influenza A virus (A/Northern shoveler/Oregon/AH0007332/2015(H5N2))
  ORGANISM  Influenza A virus (A/Northern shoveler/Oregon/AH0007332/2015(H5N2))
            Viruses; ssRNA viruses; ssRNA negative-strand viruses;
            Orthomyxoviridae; Influenzavirus A.
REFERENCE   1  (bases 1 to 1744)
  AUTHORS   Killian,M.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2015) Diagnostic Virology Laboratory, National
            Veterinary Services Laboratories (NVSL), USDA APHIS VS, 1920 Dayton
            Avenue, Ames, IA 50010, USA
COMMENT     GenBank Accession Numbers KU201661-KU201668 represent sequences
            from the 8 segments of Influenza A virus (A/Northern
            shoveler/Oregon/AH0007332/2015(H5N2)).
            
            ##Assembly-Data-START##
            Assembly Method       :: SeqMan NGen v. v4
            Sequencing Technology :: Illumina; IonTorrent
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1744
                     /organism="Influenza A virus (A/Northern
                     shoveler/Oregon/AH0007332/2015(H5N2))"
                     /mol_type="viral cRNA"
                     /strain="A/Northern shoveler/Oregon/AH0007332/2015"
                     /serotype="H5N2"
                     /isolation_source="oropharyngeal/cloacal swab pool from
                     individual bird"
                     /host="Northern shoveler; hunter harvest"
                     /db_xref="taxon:1763708"
                     /segment="4"
                     /country="USA: Morrow County, Oregon"
                     /collection_date="03-Jan-2015"
                     /note="NVSL 15-000946-20; EP1; Eurasian origin (EA-H5N8
                     clade 2.3.4.4)-North American reassortant"
     gene            17..1720
                     /gene="HA"
     CDS             17..1720
                     /gene="HA"
                     /function="receptor binding and fusion protein"
                     /codon_start=1
                     /product="hemagglutinin"
                     /protein_id="ALT19465.1"
                     /db_xref="GI:965569395"
                     /translation="MEKIVLLFAVISLVKSDQICIGYHANNSTKQVDTIMEKNVTVTH
                     AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA
                     NDLCYPGTLNDYEELKHLLSRINHFEKTLIIPRSSWPNHETSLGVSAACPYQGAPSFF
                     RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAAEQTNLYKNPDTYVSVGT
                     STLNQRLVPKIATRSQVNGQSGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG
                     DSTIMKSEMEYGHCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR
                     NSPLRERRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG
                     VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE
                     RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPKYS
                     EEAILKREEISGVKLESIGTYQILSIYSTVASSLALAIIVAGLSLWMCSNGSLQCRIC
                     I"
     sig_peptide     17..64
                     /gene="HA"
     mat_peptide     65..1051
                     /gene="HA"
                     /product="HA1"
     mat_peptide     1052..1717
                     /gene="HA"
                     /product="HA2"
ORIGIN      
        1 ggttcaatct gtcaaaatgg agaaaatagt gcttcttttt gcagtgatta gccttgttaa
       61 aagtgatcag atttgcattg gttaccatgc aaacaactca acaaagcagg ttgacacgat
      121 aatggagaaa aacgtcactg ttacacatgc ccaagacata ctggaaaaga cacacaacgg
      181 gaagctctgc gatcttaatg gagtgaagcc cctgattcta aaggattgta gcgtagctgg
      241 gtggctcctt ggaaatccaa tgtgcgacga gttcatcagg gtaccggaat ggtcttacat
      301 cgtggagagg gctaacccag ccaacgacct ctgttaccca gggaccctca atgactatga
      361 ggaactgaaa cacctattga gcagaataaa tcattttgag aaaactctga tcatccccag
      421 gagttcttgg cccaatcatg aaacatcatt aggggtgagc gcagcatgtc cataccaggg
      481 agcaccctca tttttcagaa atgtggtatg gctcatcaaa aagaacgacg catacccgac
      541 aataaagata agctacaata ataccaatcg ggaagatctt ttgatactgt gggggattca
      601 tcattccaac aatgcagcag agcagacaaa tctctataaa aacccagaca cttatgtttc
      661 cgttgggaca tcaacattaa accagagatt ggtgccaaaa atagctacta gatcccaagt
      721 aaacgggcag agtggaagaa tggatttctt ctggacaatt ttaaaaccga atgatgcaat
      781 ccactttgag agtaatggaa atttcattgc tccagaatat gcatacaaaa ttgtcaagaa
      841 aggggactca acaattatga aaagtgaaat ggagtatggc cactgcaaca ccaaatgtca
      901 aactccaata ggggcgataa actctagcat gccattccac aatatacacc ctctcaccat
      961 cggggaatgc cccaaatacg tgaagtcaaa caaattagtc cttgcgactg ggctcagaaa
     1021 tagtcctcta agagaaagaa gaagaaaaag aggactattt ggagctatag cagggtttat
     1081 agagggagga tggcagggaa tggtagacgg ttggtatggg tatcatcata gcaatgagca
     1141 ggggagtggg tacgctgcag acaaagaatc aacccaaaag gcaatagatg gagttaccaa
     1201 taaggtcaac tcaatcattg acaaaatgaa cactcaattt gaggccgttg gaagggaatt
     1261 taataactta gaaaggagaa tagagaattt aaacaagaaa atggaagacg gattcctaga
     1321 tgtctggact tataatgctg aacttttagt tctcatggaa aatgagagaa ctctagattt
     1381 ccatgactca aatgtcaaga acctttacga caaagtccga ctacagctta gggataatgc
     1441 aaaggagctg ggtaatggtt gtttcgagtt ctatcacaaa tgtgataacg aatgtatgga
     1501 gagcgtaaga aatgggacgt atgactaccc taagtattca gaagaagcaa tattaaaaag
     1561 agaagaaata agcggagtga aattagaatc aataggaact taccagatac tgtcaattta
     1621 ttcaacagtg gcgagttccc tagcactggc aatcatagtg gctggtctat ctttatggat
     1681 gtgctctaat ggttcgttac aatgcagaat ttgcatctaa atttgtgagc tcagattgta
     1741 atta

niman · December 24, 2015

LOCUS       KU201672                1744 bp    cRNA    linear   VRL 22-DEC-2015
DEFINITION  Influenza A virus (A/Northern shoveler/Oregon/AH0007337/2015(H5N2))
            segment 4 hemagglutinin (HA) gene, complete cds.
ACCESSION   KU201672
VERSION     KU201672.1  GI:965569359
KEYWORDS    .
SOURCE      Influenza A virus (A/Northern shoveler/Oregon/AH0007337/2015(H5N2))
  ORGANISM  Influenza A virus (A/Northern shoveler/Oregon/AH0007337/2015(H5N2))
            Viruses; ssRNA viruses; ssRNA negative-strand viruses;
            Orthomyxoviridae; Influenzavirus A.
REFERENCE   1  (bases 1 to 1744)
  AUTHORS   Killian,M.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2015) Diagnostic Virology Laboratory, National
            Veterinary Services Laboratories (NVSL), USDA APHIS VS, 1920 Dayton
            Avenue, Ames, IA 50010, USA
COMMENT     GenBank Accession Numbers KU201669-KU201676 represent sequences
            from the 8 segments of Influenza A virus (A/Northern
            shoveler/Oregon/AH0007337/2015(H5N2)).
            
            ##Assembly-Data-START##
            Assembly Method       :: SeqMan NGen v. v4
            Sequencing Technology :: Illumina; IonTorrent
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1744
                     /organism="Influenza A virus (A/Northern
                     shoveler/Oregon/AH0007337/2015(H5N2))"
                     /mol_type="viral cRNA"
                     /strain="A/Northern shoveler/Oregon/AH0007337/2015"
                     /serotype="H5N2"
                     /isolation_source="oropharyngeal/cloacal swab pool from
                     individual bird"
                     /host="Northern shoveler; hunter harvest"
                     /db_xref="taxon:1763709"
                     /segment="4"
                     /country="USA: Morrow County, Oregon"
                     /collection_date="03-Jan-2015"
                     /note="NVSL 15-000946-23; EP1; Eurasian origin (EA-H5N8
                     clade 2.3.4.4)-North American reassortant"
     gene            17..1720
                     /gene="HA"
     CDS             17..1720
                     /gene="HA"
                     /function="receptor binding and fusion protein"
                     /codon_start=1
                     /product="hemagglutinin"
                     /protein_id="ALT19453.1"
                     /db_xref="GI:965569360"
                     /translation="MEKIVLLFAVISLVKSDQICIGYHANNSTKQVDTIMEKNVTVTH
                     AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA
                     NDLCYPGTLNDYEELKHLLSRINHFEKTLIIPRSSWPNHETSLGVSAACPYQGAPSFF
                     RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAAEQTNLYKNPDTYVSVGT
                     STLNQRLVPKIATRSQVNGQSGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG
                     DSTIMKSEMEYGHCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR
                     NSPLRERRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG
                     VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE
                     RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPKYS
                     EEAILKREEISGVKLESIGTYQILSIYSTVASSLALAIIVAGLSLWMCSNGSLQCRIC
                     I"
     sig_peptide     17..64
                     /gene="HA"
     mat_peptide     65..1051
                     /gene="HA"
                     /product="HA1"
     mat_peptide     1052..1717
                     /gene="HA"
                     /product="HA2"
ORIGIN      
        1 ggttcaatct gtcaaaatgg agaaaatagt gcttcttttt gcagtgatta gccttgttaa
       61 aagtgatcag atttgcattg gttaccatgc aaacaactca acaaagcagg ttgacacgat
      121 aatggagaaa aacgtcactg ttacacatgc ccaagacata ctggaaaaga cacacaacgg
      181 gaagctctgc gatcttaatg gagtgaagcc cctgattcta aaggattgta gcgtagctgg
      241 gtggctcctt ggaaatccaa tgtgcgacga gttcatcagg gtaccggaat ggtcttacat
      301 cgtggagagg gctaacccag ccaacgacct ctgttaccca gggaccctca atgactatga
      361 ggaactgaaa cacctattga gcagaataaa tcattttgag aaaactctga tcatccccag
      421 gagttcttgg cccaatcatg aaacatcatt aggggtgagc gcagcatgtc cataccaggg
      481 agcaccctca tttttcagaa atgtggtatg gctcatcaaa aagaacgacg catacccgac
      541 aataaagata agctacaata ataccaatcg ggaagatctt ttgatactgt gggggattca
      601 tcattccaac aatgcagcag agcagacaaa tctctataaa aacccagaca cttatgtttc
      661 cgttgggaca tcaacattaa accagagatt ggtgccaaaa atagctacta gatcccaagt
      721 aaacgggcag agtggaagaa tggatttctt ctggacaatt ttaaaaccga atgatgcaat
      781 ccactttgag agtaatggaa atttcattgc tccagaatat gcatacaaaa ttgtcaagaa
      841 aggggactca acaattatga aaagtgaaat ggagtatggc cactgcaaca ccaaatgtca
      901 aactccaata ggggcgataa actctagcat gccattccac aatatacacc ctctcaccat
      961 cggggaatgc cccaaatacg tgaagtcaaa caaattagtc cttgcgactg ggctcagaaa
     1021 tagtcctcta agagaaagaa gaagaaaaag aggactattt ggagctatag cagggtttat
     1081 agagggagga tggcagggaa tggtagacgg ttggtatggg tatcatcata gcaatgagca
     1141 ggggagtggg tacgctgcag acaaagaatc aacccaaaag gcaatagatg gagttaccaa
     1201 taaggtcaac tcaatcattg acaaaatgaa cactcaattt gaggccgttg gaagggaatt
     1261 taataactta gaaaggagaa tagagaattt aaacaagaaa atggaagacg gattcctaga
     1321 tgtctggact tataatgctg aacttttagt tctcatggaa aatgagagaa ctctagattt
     1381 ccatgactca aatgtcaaga acctttacga caaagtccga ctacagctta gggataatgc
     1441 aaaggagctg ggtaatggtt gtttcgagtt ctatcacaaa tgtgataacg aatgtatgga
     1501 gagcgtaaga aatgggacgt atgactaccc taagtattca gaagaagcaa tattaaaaag
     1561 agaagaaata agcggagtga aattagaatc aataggaact taccagatac tgtcaattta
     1621 ttcaacagtg gcgagttccc tagcactggc aatcatagtg gctggtctat ctttatggat
     1681 gtgctctaat gggtcgttac aatgcagaat ttgcatctaa atttgtgagc tcagattgta
     1741 atta

niman · December 24, 2015

LOCUS       KU201680                1744 bp    cRNA    linear   VRL 22-DEC-2015
DEFINITION  Influenza A virus (A/Northern shoveler/Oregon/AH0007339/2015(H5N2))
            segment 4 hemagglutinin (HA) gene, complete cds.
ACCESSION   KU201680
VERSION     KU201680.1  GI:965569325
KEYWORDS    .
SOURCE      Influenza A virus (A/Northern shoveler/Oregon/AH0007339/2015(H5N2))
  ORGANISM  Influenza A virus (A/Northern shoveler/Oregon/AH0007339/2015(H5N2))
            Viruses; ssRNA viruses; ssRNA negative-strand viruses;
            Orthomyxoviridae; Influenzavirus A.
REFERENCE   1  (bases 1 to 1744)
  AUTHORS   Killian,M.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2015) Diagnostic Virology Laboratory, National
            Veterinary Services Laboratories (NVSL), USDA APHIS VS, 1920 Dayton
            Avenue, Ames, IA 50010, USA
COMMENT     GenBank Accession Numbers KU201677-KU201684 represent sequences
            from the 8 segments of Influenza A virus (A/Northern
            shoveler/Oregon/AH0007339/2015(H5N2)).
            
            ##Assembly-Data-START##
            Assembly Method       :: SeqMan NGen v. v4
            Sequencing Technology :: Illumina; IonTorrent
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1744
                     /organism="Influenza A virus (A/Northern
                     shoveler/Oregon/AH0007339/2015(H5N2))"
                     /mol_type="viral cRNA"
                     /strain="A/Northern shoveler/Oregon/AH0007339/2015"
                     /serotype="H5N2"
                     /isolation_source="oropharyngeal/cloacal swab pool from
                     individual bird"
                     /host="Northern shoveler; hunter harvest"
                     /db_xref="taxon:1763710"
                     /segment="4"
                     /country="USA: Morrow County, Oregon"
                     /collection_date="03-Jan-2015"
                     /note="NVSL 15-000946-25; EP1; Eurasian origin (EA-H5N8
                     clade 2.3.4.4)-North American reassortant"
     gene            17..1720
                     /gene="HA"
     CDS             17..1720
                     /gene="HA"
                     /function="receptor binding and fusion protein"
                     /codon_start=1
                     /product="hemagglutinin"
                     /protein_id="ALT19441.1"
                     /db_xref="GI:965569326"
                     /translation="MEKIVLLFAVISLVKSDQICIGYHANNSTKQVDTIMEKNVTVTH
                     AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA
                     NDLCYPGTLNDYEELKHLLSRINHFEKTLIIPRSSWPNHETSLGVSAACPYQGAPSFF
                     RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAAEQTNLYKNPDTYVSVGT
                     STLNQRLVPKIATRSQVNGQGGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG
                     DSTIMKSEMEYGHCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR
                     NSPLRERRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG
                     VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE
                     RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPKYS
                     EEAILKREEISGVKLESIGTYQILSIYSTVASSLALAIIVAGLSLWMCSNGSLQCRIC
                     I"
     sig_peptide     17..64
                     /gene="HA"
     mat_peptide     65..1051
                     /gene="HA"
                     /product="HA1"
     mat_peptide     1052..1717
                     /gene="HA"
                     /product="HA2"
ORIGIN      
        1 ggttcaatct gtcaaaatgg agaaaatagt gcttcttttt gcagtgatta gccttgttaa
       61 aagtgatcag atttgcattg gttaccatgc aaacaactca acaaagcagg ttgacacgat
      121 aatggagaaa aacgtcactg ttacacatgc ccaagacata ctggaaaaga cacacaacgg
      181 gaagctctgc gatcttaatg gagtgaagcc cctgattcta aaggattgta gcgtagctgg
      241 gtggctcctt ggaaatccaa tgtgcgacga gttcatcagg gtaccggaat ggtcttacat
      301 cgtggagagg gctaacccag ccaacgacct ctgttaccca gggaccctca atgactatga
      361 ggaactgaaa cacctattga gcagaataaa tcattttgag aaaactctga tcatccccag
      421 gagttcttgg cccaatcatg aaacatcatt aggggtgagc gcagcatgtc cataccaggg
      481 agcaccctca tttttcagaa atgtggtatg gctcatcaaa aagaacgacg catacccgac
      541 aataaagata agctacaata ataccaatcg ggaagatctt ttgatactgt gggggattca
      601 tcattccaac aatgcagcag agcagacaaa tctctataaa aacccagaca cttatgtttc
      661 cgttgggaca tcaacattaa accagagatt ggtgccaaaa atagctacta gatcccaagt
      721 aaacgggcag ggtggaagaa tggatttctt ctggacaatt ttaaaaccga atgatgcaat
      781 ccactttgag agtaatggaa atttcattgc tccagaatat gcatacaaaa ttgtcaagaa
      841 aggggactca acaattatga aaagtgaaat ggagtatggc cactgcaaca ccaaatgtca
      901 aactccaata ggggcgataa actctagcat gccattccac aatatacacc ctctcaccat
      961 cggggaatgc cccaaatacg tgaagtcaaa caaattagtc cttgcgactg ggctcagaaa
     1021 tagtcctcta agagaaagaa gaagaaaaag aggactattt ggagctatag cagggtttat
     1081 agagggagga tggcagggaa tggtagacgg ttggtatggg tatcatcata gcaatgagca
     1141 ggggagtggg tacgctgcag acaaagaatc aacccaaaag gcaatagatg gagttaccaa
     1201 taaggtcaac tcaatcattg acaaaatgaa cactcaattt gaggccgttg gaagggaatt
     1261 taataactta gaaaggagaa tagagaattt aaacaagaaa atggaagacg gattcctaga
     1321 tgtctggact tataatgctg aacttttagt tctcatggaa aatgagagaa ctctagattt
     1381 ccatgactca aatgtcaaga acctttacga caaagtccga ctacagctta gggataatgc
     1441 aaaggagctg ggtaatggtt gtttcgagtt ctatcacaaa tgtgataacg aatgtatgga
     1501 gagcgtaaga aatgggacgt atgactaccc taagtattca gaagaagcaa tattaaaaag
     1561 agaagaaata agcggagtga aattagaatc aataggaact taccagatac tgtcaattta
     1621 ttcaacagtg gcgagttccc tagcactggc aatcatagtg gctggtctat ctttatggat
     1681 gtgctctaat gggtcgttac aatgcagaat ttgcatctaa atttgtgagc tcagattgta
     1741 atta

niman · December 24, 2015

LOCUS       KU201688                1744 bp    cRNA    linear   VRL 22-DEC-2015
DEFINITION  Influenza A virus (A/mallard/Idaho/AH0008597/2015(H5N8)) segment 4
            hemagglutinin (HA) gene, complete cds.
ACCESSION   KU201688
VERSION     KU201688.1  GI:965569286
KEYWORDS    .
SOURCE      Influenza A virus (A/mallard/Idaho/AH0008597/2015(H5N8))
  ORGANISM  Influenza A virus (A/mallard/Idaho/AH0008597/2015(H5N8))
            Viruses; ssRNA viruses; ssRNA negative-strand viruses;
            Orthomyxoviridae; Influenzavirus A.
REFERENCE   1  (bases 1 to 1744)
  AUTHORS   Killian,M.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2015) Diagnostic Virology Laboratory, National
            Veterinary Services Laboratories (NVSL), USDA APHIS VS, 1920 Dayton
            Avenue, Ames, IA 50010, USA
COMMENT     GenBank Accession Numbers KU201685-KU201692 represent sequences
            from the 8 segments of Influenza A virus
            (A/mallard/Idaho/AH0008597/2015(H5N8)).
            
            ##Assembly-Data-START##
            Assembly Method       :: SeqMan NGen v. v4
            Sequencing Technology :: Illumina; IonTorrent
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1744
                     /organism="Influenza A virus
                     (A/mallard/Idaho/AH0008597/2015(H5N8))"
                     /mol_type="viral cRNA"
                     /strain="A/mallard/Idaho/AH0008597/2015"
                     /serotype="H5N8"
                     /isolation_source="oropharyngeal/cloacal swab pool from
                     individual bird"
                     /host="mallard; hunter harvest"
                     /db_xref="taxon:1763717"
                     /segment="4"
                     /country="USA: Gooding County, Idaho"
                     /collection_date="07-Jan-2015"
                     /note="NVSL 15-001363-3; EP1; Eurasian origin H5N8 clade
                     2.3.4.4"
     gene            17..1720
                     /gene="HA"
     CDS             17..1720
                     /gene="HA"
                     /function="receptor binding and fusion protein"
                     /codon_start=1
                     /product="hemagglutinin"
                     /protein_id="ALT19429.1"
                     /db_xref="GI:965569287"
                     /translation="MEKIVLLLAVISLVKSDQICIGYHANNSTKQVDTIMEKNVTVTH
                     AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA
                     NDLCYPGTLNDYEELKHLLSRINHFEKTLIIPRSSWPNHETSLGVSAACPYQGASSFF
                     RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAAEQTNLYKNPDTYVSVGT
                     STLNQRLVPKIATRSQVNGQSGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG
                     DSTIMKSEMEYGHCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR
                     NSPLRERRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG
                     VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE
                     RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPKYS
                     EEAILKREEISGVKLESIGTYQILSIYSTVASSLALAIIVAGLSLWMCSNGSLQCRIC
                     I"
     sig_peptide     17..64
                     /gene="HA"
     mat_peptide     65..1051
                     /gene="HA"
                     /product="HA1"
     mat_peptide     1052..1717
                     /gene="HA"
                     /product="HA2"
ORIGIN      
        1 ggttcaatct gtcaaaatgg agaaaatagt gcttcttctt gcagtgatta gccttgttaa
       61 aagtgatcag atttgcattg gttaccatgc aaacaactca acaaagcagg ttgacacgat
      121 aatggagaaa aacgtcactg ttacacatgc ccaagacata ctggaaaaga cacacaacgg
      181 gaagctctgc gatcttaatg gagtgaagcc cctgattcta aaggattgta gcgtagctgg
      241 gtggctcctt ggaaatccaa tgtgcgacga gttcatcagg gtaccggaat ggtcttacat
      301 cgtggagagg gctaatccag ccaacgacct atgttaccca gggaccctca atgactatga
      361 ggaactgaaa cacctattga gcagaataaa tcattttgag aaaactctga tcatccccag
      421 gagttcttgg cccaatcatg aaacatcatt aggggtgagc gcagcatgtc cataccaggg
      481 agcatcctca tttttcagaa atgtggtatg gctcatcaaa aagaacgatg catacccgac
      541 aataaagata agctacaata ataccaatcg ggaagatctt ttgatactgt gggggattca
      601 tcattccaac aatgcagcag agcagacaaa tctctataaa aacccagaca cttatgtttc
      661 cgttgggaca tcaacattaa accagagatt ggtgccaaaa atagctacta gatcccaagt
      721 aaacgggcag agtggaagaa tggatttctt ctggacaatt ttaaaaccga atgatgcaat
      781 ccactttgag agtaatggaa atttcattgc tccagaatat gcatacaaaa ttgtcaagaa
      841 aggggactca acaattatga aaagtgaaat ggagtatggc cactgcaaca ccaaatgtca
      901 aactccaata ggggcgataa actctagcat gccattccac aatatacacc ctctcaccat
      961 cggggaatgc cccaaatacg tgaagtcaaa caaattagtc cttgcgactg ggctcagaaa
     1021 tagtcctcta agagaaagaa gaagaaaaag aggactattt ggagctatag cagggtttat
     1081 agagggagga tggcagggaa tggtagacgg ttggtatggg tatcatcata gcaatgagca
     1141 ggggagtggg tacgctgcag acaaagaatc cacccaaaag gcaatagatg gagttaccaa
     1201 taaggtcaac tcaatcattg acaaaatgaa cactcaattt gaggccgttg gaagggaatt
     1261 taataactta gaaaggagaa tagagaattt aaacaagaaa atggaagacg gattcctaga
     1321 tgtctggact tataatgctg aacttttagt tctcatggaa aatgagagaa ctctagattt
     1381 tcatgactca aatgtcaaga acctttacga caaagtccga ctacagctta gggataatgc
     1441 aaaggagctg ggcaatggtt gtttcgagtt ctatcacaaa tgtgataacg aatgtatgga
     1501 gagcgtaaga aatgggacgt atgactaccc taagtattca gaagaagcaa tattaaaaag
     1561 agaagaaata agcggagtga aattagaatc aataggaact taccagatac tgtcaattta
     1621 ttcaacagtg gcgagttccc tagcactggc aatcatagtg gctggtctat ctttatggat
     1681 gtgctctaat gggtcgttac aatgcagaat ttgcatctaa atttgtgagc tcagattgta
     1741 atta

niman · December 24, 2015

LOCUS       KU201696                1744 bp    cRNA    linear   VRL 22-DEC-2015
DEFINITION  Influenza A virus (A/mallard/Oregon/AH0008887/2015(H5N2)) segment 4
            hemagglutinin (HA) gene, complete cds.
ACCESSION   KU201696
VERSION     KU201696.1  GI:965569246
KEYWORDS    .
SOURCE      Influenza A virus (A/mallard/Oregon/AH0008887/2015(H5N2))
  ORGANISM  Influenza A virus (A/mallard/Oregon/AH0008887/2015(H5N2))
            Viruses; ssRNA viruses; ssRNA negative-strand viruses;
            Orthomyxoviridae; Influenzavirus A.
REFERENCE   1  (bases 1 to 1744)
  AUTHORS   Killian,M.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2015) Diagnostic Virology Laboratory, National
            Veterinary Services Laboratories (NVSL), USDA APHIS VS, 1920 Dayton
            Avenue, Ames, IA 50010, USA
COMMENT     GenBank Accession Numbers KU201693-KU201700 represent sequences
            from the 8 segments of Influenza A virus
            (A/mallard/Oregon/AH0008887/2015(H5N2)).
            
            ##Assembly-Data-START##
            Assembly Method       :: SeqMan NGen v. v4
            Sequencing Technology :: Illumina; IonTorrent
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1744
                     /organism="Influenza A virus
                     (A/mallard/Oregon/AH0008887/2015(H5N2))"
                     /mol_type="viral cRNA"
                     /strain="A/mallard/Oregon/AH0008887/2015"
                     /serotype="H5N2"
                     /isolation_source="oropharyngeal/cloacal swab pool from
                     individual bird"
                     /host="mallard; hunter harvest"
                     /db_xref="taxon:1763723"
                     /segment="4"
                     /country="USA: Lane County, Oregon"
                     /collection_date="07-Jan-2015"
                     /note="NVSL 15-001515-1; EP1; Eurasian origin (EA-H5N8
                     clade 2.3.4.4)-North American reassortant"
     gene            17..1720
                     /gene="HA"
     CDS             17..1720
                     /gene="HA"
                     /function="receptor binding and fusion protein"
                     /codon_start=1
                     /product="hemagglutinin"
                     /protein_id="ALT19417.1"
                     /db_xref="GI:965569247"
                     /translation="MEKIVLLFAVISLVKSDQICIGYHANNSTKQVDTIMEKNVTVTH
                     AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA
                     NDLCYPGTLNDYEELKHLLSRINHFEKTLIIPRSSWPNHETSLGVSAACPYQGASSFF
                     RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAAEQTNLYKNPDTYVSVGT
                     STLNQRLVPKIATRSQVNGQSGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG
                     DSTIMKSEMEYGHCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR
                     NSPLRERRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG
                     VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE
                     RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPKYS
                     EEAILKREEISGVKLESIGTYQILSIYSTVASSLALAIIVAGLSLWMCSNGSLQCRIC
                     I"
     sig_peptide     17..64
                     /gene="HA"
     mat_peptide     65..1051
                     /gene="HA"
                     /product="HA1"
     mat_peptide     1052..1717
                     /gene="HA"
                     /product="HA2"
ORIGIN      
        1 ggttcaatct gtcaaaatgg agaaaatagt gcttcttttt gcagtgatta gccttgttaa
       61 aagtgatcag atttgcattg gttaccatgc aaacaactca acaaagcagg ttgacacgat
      121 aatggagaaa aacgtcactg ttacacatgc ccaagacata ctggaaaaga cacacaacgg
      181 gaagctctgc gatcttaatg gagtgaagcc cctgattcta aaggattgta gcgtagctgg
      241 gtggctcctt ggaaatccaa tgtgcgacga gttcatcagg gtaccggaat ggtcttacat
      301 cgtggagagg gctaacccag ccaacgacct ctgttaccca gggaccctca atgactatga
      361 ggaactgaaa cacctattga gcagaataaa tcattttgag aaaactctga tcatccccag
      421 gagttcttgg cccaatcatg aaacatcatt aggggtgagc gcagcatgtc cataccaggg
      481 agcatcctca tttttcagaa atgtggtatg gctcatcaaa aagaacgatg catacccgac
      541 aataaagata agctacaata ataccaatcg ggaagatctt ttgatactgt gggggattca
      601 tcattccaac aatgcagcag agcagacaaa tctctataaa aacccagaca cttatgtttc
      661 cgttgggaca tcaacattaa accagagatt ggtgccaaaa atagctacta gatcccaagt
      721 aaacgggcag agtggaagaa tggatttctt ctggacaatt ttaaaaccga atgatgcaat
      781 ccactttgag agtaatggaa atttcattgc tccagaatat gcatacaaaa ttgtcaagaa
      841 aggggactca acaattatga aaagtgaaat ggagtatggc cactgcaaca ccaaatgtca
      901 aactccaata ggggcgataa actctagcat gccattccac aatatacacc ctctcaccat
      961 cggggaatgc cccaaatacg tgaagtcaaa caaattagtc cttgcgactg ggctcagaaa
     1021 tagtcctcta agagaaagaa gaagaaaaag aggactattt ggagctatag cagggtttat
     1081 agagggagga tggcagggaa tggtagacgg ttggtatggg tatcatcata gcaatgagca
     1141 ggggagtggg tacgctgcag acaaagaatc aacccaaaag gcaatagatg gagttaccaa
     1201 taaggtcaac tcaatcattg acaaaatgaa cactcaattt gaggccgttg gaagggaatt
     1261 taataactta gaaaggagaa tagagaattt aaacaagaaa atggaagacg gattcctaga
     1321 tgtctggact tataatgctg aacttttagt tctcatggaa aatgagagaa ctctagattt
     1381 ccatgactca aatgtcaaga acctttacga caaagtccga ctacagctta gggataatgc
     1441 aaaggagctg ggtaatggtt gtttcgagtt ctatcacaaa tgtgataacg aatgtatgga
     1501 gagcgtaaga aatgggactt atgactaccc taagtattca gaagaagcaa tattaaaaag
     1561 agaagaaata agcggagtga aattagaatc aataggaact taccagatac tgtcaattta
     1621 ttcaacagtg gcgagttccc tagcactggc aatcatagtg gctggtctat ctttatggat
     1681 gtgctctaat gggtcgttac aatgcagaat ttgcatctaa atttgtgagc tcagattgta
     1741 atta

niman · December 24, 2015

LOCUS       KU201704                1744 bp    cRNA    linear   VRL 22-DEC-2015
DEFINITION  Influenza A virus (A/Northern pintail/Oregon/AH0003871/2015(H5N2))
            segment 4 hemagglutinin (HA) gene, complete cds.
ACCESSION   KU201704
VERSION     KU201704.1  GI:965569210
KEYWORDS    .
SOURCE      Influenza A virus (A/Northern pintail/Oregon/AH0003871/2015(H5N2))
  ORGANISM  Influenza A virus (A/Northern pintail/Oregon/AH0003871/2015(H5N2))
            Viruses; ssRNA viruses; ssRNA negative-strand viruses;
            Orthomyxoviridae; Influenzavirus A.
REFERENCE   1  (bases 1 to 1744)
  AUTHORS   Killian,M.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2015) Diagnostic Virology Laboratory, National
            Veterinary Services Laboratories (NVSL), USDA APHIS VS, 1920 Dayton
            Avenue, Ames, IA 50010, USA
COMMENT     GenBank Accession Numbers KU201701-KU201708 represent sequences
            from the 8 segments of Influenza A virus (A/Northern
            pintail/Oregon/AH0003871/2015(H5N2)).
            
            ##Assembly-Data-START##
            Assembly Method       :: SeqMan NGen v. v4
            Sequencing Technology :: Illumina; IonTorrent
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1744
                     /organism="Influenza A virus (A/Northern
                     pintail/Oregon/AH0003871/2015(H5N2))"
                     /mol_type="viral cRNA"
                     /strain="A/Northern pintail/Oregon/AH0003871/2015"
                     /serotype="H5N2"
                     /isolation_source="oropharyngeal/cloacal swab pool from
                     individual bird"
                     /host="northern pintail; hunter harvest"
                     /db_xref="taxon:1763704"
                     /segment="4"
                     /country="USA: Lane County, Oregon"
                     /collection_date="12-Jan-2015"
                     /note="NVSL 15-002191-3; EP1; Eurasian origin (EA-H5N8
                     clade 2.3.4.4)-North American reassortant"
     gene            17..1720
                     /gene="HA"
     CDS             17..1720
                     /gene="HA"
                     /function="receptor binding and fusion protein"
                     /codon_start=1
                     /product="hemagglutinin"
                     /protein_id="ALT19405.1"
                     /db_xref="GI:965569211"
                     /translation="MEKIVLLLAVISLVKSDQICIGYHANNSTKQVDTIMEKNVTVTH
                     AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA
                     NDLCYPGTLNDYEELKHLLSRINHFEKTLIIPRSSWPNHETSLGVSAACPYQGASSFF
                     RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAAEQTNLYKNPDTYVSVGT
                     STLNQRLVPKIATRSQVNGQSGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG
                     DSTIMKSEMEYGHCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR
                     NSPLRERRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG
                     VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE
                     RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPKYS
                     EEAILKREEISGVKLESIGTYQILSIYSTVASSLALAIIVAGLSLWMCSNGSLQCRIC
                     I"
     sig_peptide     17..64
                     /gene="HA"
     mat_peptide     65..1051
                     /gene="HA"
                     /product="HA1"
     mat_peptide     1052..1717
                     /gene="HA"
                     /product="HA2"
ORIGIN      
        1 ggttcaatct gtcaaaatgg agaaaatagt gcttcttctt gcagtgatta gccttgttaa
       61 aagtgatcag atttgcattg gttaccatgc aaacaactca acaaagcagg ttgacacgat
      121 aatggagaaa aacgtcactg ttacacatgc ccaagacata ctggaaaaga cacacaacgg
      181 gaagctctgc gatcttaatg gagtgaagcc cctgattcta aaggattgta gcgtagctgg
      241 gtggctcctt ggaaatccaa tgtgcgacga gttcatcagg gtaccggaat ggtcttacat
      301 cgtggagagg gctaacccag ccaacgacct ctgttaccca gggaccctca atgactatga
      361 ggaactgaaa cacctattga gcagaataaa tcattttgag aaaactctga tcatccccag
      421 gagttcttgg cccaatcatg aaacatcatt aggggtgagc gcagcatgtc cataccaggg
      481 agcatcctca tttttcagaa atgtggtatg gctcatcaaa aagaacgatg catacccgac
      541 aataaagata agctacaata ataccaatcg ggaagatctt ttgatactgt gggggattca
      601 tcattccaac aatgcagcag agcagacaaa tctctataaa aacccagaca cttatgtttc
      661 cgttgggaca tcaacattaa accagagatt ggtgccaaaa atagctacta gatcccaagt
      721 aaacgggcag agtggaagaa tggatttctt ctggacaatt ttaaaaccga atgatgcaat
      781 ccactttgag agtaatggaa atttcattgc tccagaatat gcatacaaaa ttgtcaagaa
      841 aggggactca acaattatga aaagtgaaat ggagtatggc cactgcaaca ccaaatgtca
      901 aactccaata ggggcgataa actctagcat gccattccac aatatacacc ccctcaccat
      961 cggggaatgc cccaaatacg tgaagtcaaa caaattagtc cttgcgactg ggctcagaaa
     1021 tagtcctcta agagaaagaa gaagaaaaag aggactattt ggagctatag cagggtttat
     1081 agagggagga tggcagggaa tggtagacgg ttggtatggg tatcatcata gcaatgagca
     1141 ggggagtggg tacgctgcag acaaagaatc aacccaaaag gcaatagatg gagttaccaa
     1201 taaggtcaac tcaatcattg acaaaatgaa cactcaattt gaggccgttg gaagggaatt
     1261 taataactta gaaaggagaa tagagaattt aaacaagaaa atggaagacg gattcctaga
     1321 tgtctggact tataatgctg aacttttagt tctcatggaa aatgagagaa ctctggattt
     1381 ccatgactca aatgtcaaga acctttacga caaagtccga ctacagctta gggataatgc
     1441 aaaggagctg ggtaatggtt gtttcgagtt ctatcacaaa tgtgataacg aatgtatgga
     1501 gagcgtaaga aatgggacgt atgactaccc taagtattca gaagaagcaa tattaaaaag
     1561 agaagaaata agcggagtga aattagaatc aataggaact taccagatac tgtcaattta
     1621 ttcaacagtg gcgagttccc tagcactggc aatcatagtg gctggtctat ctttatggat
     1681 gtgctctaat gggtcgttac aatgcagaat ttgcatctaa atttgtgagc tcagattgta
     1741 atta

niman · December 24, 2015

LOCUS       KU201712                1704 bp    cRNA    linear   VRL 22-DEC-2015
DEFINITION  Influenza A virus (A/mallard/Idaho/AH0007412/2015(H5N2)) segment 4
            hemagglutinin (HA) gene, complete cds.
ACCESSION   KU201712
VERSION     KU201712.1  GI:965569171
KEYWORDS    .
SOURCE      Influenza A virus (A/mallard/Idaho/AH0007412/2015(H5N2))
  ORGANISM  Influenza A virus (A/mallard/Idaho/AH0007412/2015(H5N2))
            Viruses; ssRNA viruses; ssRNA negative-strand viruses;
            Orthomyxoviridae; Influenzavirus A.
REFERENCE   1  (bases 1 to 1704)
  AUTHORS   Killian,M.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2015) Diagnostic Virology Laboratory, National
            Veterinary Services Laboratories (NVSL), USDA APHIS VS, 1920 Dayton
            Avenue, Ames, IA 50010, USA
COMMENT     GenBank Accession Numbers KU201709-KU201716 represent sequences
            from the 8 segments of Influenza A virus
            (A/mallard/Idaho/AH0007412/2015(H5N2)).
            
            ##Assembly-Data-START##
            Assembly Method       :: SeqMan NGen v. v4
            Sequencing Technology :: Illumina; IonTorrent
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1704
                     /organism="Influenza A virus
                     (A/mallard/Idaho/AH0007412/2015(H5N2))"
                     /mol_type="viral cRNA"
                     /strain="A/mallard/Idaho/AH0007412/2015"
                     /serotype="H5N2"
                     /isolation_source="oropharyngeal/cloacal swab pool from
                     individual bird"
                     /host="mallard; hunter harvest"
                     /db_xref="taxon:1763715"
                     /segment="4"
                     /country="USA: Canyon County, Idaho"
                     /collection_date="17-Jan-2015"
                     /note="NVSL 15-002893-3; EP1; Eurasian origin (EA-H5N8
                     clade 2.3.4.4)-North American reassortant"
     gene            1..1704
                     /gene="HA"
     CDS             1..1704
                     /gene="HA"
                     /function="receptor binding and fusion protein"
                     /codon_start=1
                     /product="hemagglutinin"
                     /protein_id="ALT19393.1"
                     /db_xref="GI:965569172"
                     /translation="MEKIVLLFAVISLVKSDQICIGYHANNSTKQVDTIMEKNVTVTH
                     AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA
                     NDLCYPGTLNDYEELKHLLSRINHFEKTLIIPRSSWPNHETSLGVSAACPYQGASSFF
                     RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAAEQTNLYKNPDTYVSVGT
                     STLNQRLVPKIATRSQVNGQSGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG
                     DSTIMKSEMEYGHCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR
                     NSPLRERRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG
                     VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE
                     RTLDFHDSNVKNLYDKVRLQLKDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPKYS
                     EEAILKREEISGVKLESIGTYQILSIYSTVASSLALAIIVAGLSLWMCSNGSLQCRIC
                     I"
     sig_peptide     1..48
                     /gene="HA"
     mat_peptide     49..1035
                     /gene="HA"
                     /product="HA1"
     mat_peptide     1036..1701
                     /gene="HA"
                     /product="HA2"
ORIGIN      
        1 atggagaaaa tagtgcttct ttttgcagtg attagccttg ttaaaagtga tcagatttgc
       61 attggttacc atgcaaacaa ctcaacaaag caggttgaca cgataatgga gaaaaacgtc
      121 actgttacac atgcccaaga catactggaa aagacacaca acgggaagct ctgcgatctt
      181 aatggagtga agcccctgat tctaaaggat tgtagcgtag ctgggtggct ccttggaaat
      241 ccaatgtgcg acgagttcat cagggtaccg gaatggtctt acatcgtgga gagggctaac
      301 ccagccaacg acctctgtta cccagggacc ctcaatgact atgaggaact gaaacaccta
      361 ttgagcagaa taaatcattt tgagaaaact ctgatcatcc ccaggagttc ttggcccaat
      421 catgaaacat cattaggggt gagcgcagca tgtccatacc agggagcatc ctcatttttc
      481 agaaatgtgg tatggctcat caaaaagaac gatgcatacc cgacaataaa gataagctac
      541 aataatacca atcgggaaga tcttttgata ctgtggggga ttcatcattc caacaatgca
      601 gcagagcaga caaatctcta taaaaaccca gacacttatg tctccgttgg gacatcaaca
      661 ttaaaccaga gattggtgcc aaaaatagct actagatccc aagtaaacgg gcagagtgga
      721 agaatggatt tcttctggac aattttaaaa ccgaatgatg caatccactt tgagagtaat
      781 ggaaatttca ttgctccaga atatgcatac aaaattgtca agaaagggga ctcaacaatt
      841 atgaaaagtg aaatggagta tggccactgc aacaccaaat gtcaaactcc aataggggcg
      901 ataaactcta gcatgccatt ccacaatata caccctctca ccatcgggga atgccccaaa
      961 tacgtgaagt caaacaaatt agtccttgcg actgggctca gaaatagtcc tctaagagaa
     1021 agaagaagaa aaagaggact atttggagct atagcagggt ttatagaggg aggatggcag
     1081 ggaatggtag acggttggta tgggtatcac catagcaatg agcaggggag tgggtacgct
     1141 gcagacaaag aatcaaccca aaaggcaata gatggagtta ccaataaggt caactcaatc
     1201 attgacaaaa tgaacactca atttgaggcc gttggaaggg aatttaataa cttagaaagg
     1261 agaatagaga atttaaacaa gaaaatggaa gacggattcc tagatgtctg gacttataat
     1321 gctgaacttt tagttctcat ggaaaatgag agaactctag atttccatga ctcaaatgtc
     1381 aagaaccttt acgacaaagt ccgactacag cttaaggata atgcaaagga gctgggtaat
     1441 ggttgtttcg agttctatca caaatgtgat aacgaatgta tggagagcgt aagaaatggg
     1501 acgtatgact accctaagta ttcagaagaa gcaatattaa aaagagaaga aataagcgga
     1561 gtgaaattag aatcaatagg aacttaccag atactgtcaa tttattcaac agtggcgagt
     1621 tccctagcac tggcaatcat agtggctggt ctatctttat ggatgtgctc taatgggtcg
     1681 ttacaatgca gaatttgcat ctaa

niman · December 24, 2015

LOCUS       KU201720                1744 bp    cRNA    linear   VRL 22-DEC-2015
DEFINITION  Influenza A virus (A/mallard/Idaho/AH0007413/2015(H5N2)) segment 4
            hemagglutinin (HA) gene, complete cds.
ACCESSION   KU201720
VERSION     KU201720.1  GI:965569138
KEYWORDS    .
SOURCE      Influenza A virus (A/mallard/Idaho/AH0007413/2015(H5N2))
  ORGANISM  Influenza A virus (A/mallard/Idaho/AH0007413/2015(H5N2))
            Viruses; ssRNA viruses; ssRNA negative-strand viruses;
            Orthomyxoviridae; Influenzavirus A.
REFERENCE   1  (bases 1 to 1744)
  AUTHORS   Killian,M.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2015) Diagnostic Virology Laboratory, National
            Veterinary Services Laboratories (NVSL), USDA APHIS VS, 1920 Dayton
            Avenue, Ames, IA 50010, USA
COMMENT     GenBank Accession Numbers KU201717-KU201724 represent sequences
            from the 8 segments of Influenza A virus
            (A/mallard/Idaho/AH0007413/2015(H5N2)).
            
            ##Assembly-Data-START##
            Assembly Method       :: SeqMan NGen v. v4
            Sequencing Technology :: Illumina; IonTorrent
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1744
                     /organism="Influenza A virus
                     (A/mallard/Idaho/AH0007413/2015(H5N2))"
                     /mol_type="viral cRNA"
                     /strain="A/mallard/Idaho/AH0007413/2015"
                     /serotype="H5N2"
                     /isolation_source="oropharyngeal/cloacal swab pool from
                     individual bird"
                     /host="mallard; hunter harvest"
                     /db_xref="taxon:1763716"
                     /segment="4"
                     /country="USA: Canyon County, Idaho"
                     /collection_date="17-Jan-2015"
                     /note="NVSL 15-002893-4; EP1; Eurasian origin (EA-H5N8
                     clade 2.3.4.4)-North American reassortant"
     gene            17..1720
                     /gene="HA"
     CDS             17..1720
                     /gene="HA"
                     /function="receptor binding and fusion protein"
                     /codon_start=1
                     /product="hemagglutinin"
                     /protein_id="ALT19381.1"
                     /db_xref="GI:965569139"
                     /translation="MEKIVLLFAVISLVKSDQICIGYHANNSTKQVDTIMEKNVTVTH
                     AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA
                     NDLCYPGTLNDYEELKHLLSRINHFEKTLIIPRSSWPNHETSLGVSAACPYQGASSFF
                     RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAAEQTNLYKNPDTYVSVGT
                     STLNQRLVPKIATRSQVNGQSGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG
                     DSTIMKSEMEYGHCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR
                     NSPLRERRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG
                     VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE
                     RTLDFHDSNVKNLYDKVRLQLKDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPKYS
                     EEAILKREEISGVKLESIGTYQILSIYSTVASSLALAIIVAGLSLWMCSNGSLQCRIC
                     I"
     sig_peptide     17..64
                     /gene="HA"
     mat_peptide     65..1051
                     /gene="HA"
                     /product="HA1"
     mat_peptide     1052..1717
                     /gene="HA"
                     /product="HA2"
ORIGIN      
        1 ggttcagggt gacaaaatgg agaaaatagt gcttcttttt gcagtgatta gccttgttaa
       61 aagtgatcag atttgcattg gttaccatgc aaacaactca acaaagcagg ttgacacgat
      121 aatggagaaa aacgtcactg ttacacatgc ccaagacata ctggaaaaga cacacaacgg
      181 gaagctctgc gatcttaatg gagtgaagcc cctgattcta aaggattgta gcgtagctgg
      241 gtggctcctt ggaaatccaa tgtgcgacga gttcatcagg gtaccggaat ggtcttacat
      301 cgtggagagg gctaacccag ccaacgacct ctgttaccca gggaccctca atgactatga
      361 ggaactgaaa cacctattga gcagaataaa tcattttgag aaaactctga tcatccccag
      421 gagttcttgg cccaatcatg aaacatcatt aggggtgagc gcagcatgtc cataccaggg
      481 agcatcctca tttttcagaa atgtggtatg gctcatcaaa aagaacgatg catacccgac
      541 aataaagata agctacaata ataccaatcg ggaagatctt ttgatactgt gggggattca
      601 tcattccaac aatgcagcag agcagacaaa tctctataaa aacccagaca cttatgtctc
      661 cgttgggaca tcaacattaa accagagatt ggtgccaaaa atagctacta gatcccaagt
      721 aaacgggcag agtggaagaa tggatttctt ctggacaatt ttaaaaccga atgatgcaat
      781 ccactttgag agtaatggaa atttcattgc tccagaatat gcatacaaaa ttgtcaagaa
      841 aggggactca acaattatga aaagtgaaat ggagtatggc cactgcaaca ccaaatgtca
      901 aactccaata ggggcgataa actctagcat gccattccac aatatacacc ctctcaccat
      961 cggggaatgc cccaaatacg tgaagtcaaa caaattagtc cttgcgactg ggctcagaaa
     1021 tagtcctcta agagaaagaa gaagaaaaag aggactattt ggagctatag cagggtttat
     1081 agagggagga tggcagggaa tggtagacgg ttggtatggg tatcaccata gcaatgagca
     1141 ggggagtggg tacgctgcag acaaagaatc aacccaaaag gcaatagatg gagttaccaa
     1201 taaggtcaac tcaatcattg acaaaatgaa cactcaattt gaggccgttg gaagggaatt
     1261 taataactta gaaaggagaa tagagaattt aaacaagaaa atggaagacg gattcctaga
     1321 tgtctggact tataatgctg aacttttagt tctcatggaa aatgagagaa ctctagattt
     1381 ccatgactca aatgtcaaga acctttacga caaagtccga ctacagctta aggataatgc
     1441 aaaggagctg ggtaatggtt gtttcgagtt ctatcacaaa tgtgataacg aatgtatgga
     1501 gagcgtaaga aatgggacgt atgactaccc taagtattca gaagaagcaa tattaaaaag
     1561 agaagaaata agcggagtga aattagaatc aataggaact taccagatac tgtcaattta
     1621 ttcaacagtg gcgagttccc tagcactggc aatcatagtg gctggtctat ctttatggat
     1681 gtgctctaat gggtcgttac aatgcagaat ttgcatctaa atttgtgagc tcagattgta
     1741 atta

niman · December 24, 2015

LOCUS       KU201728                1744 bp    cRNA    linear   VRL 22-DEC-2015
DEFINITION  Influenza A virus (A/American green-winged
            teal/Idaho/AH0011899/2015(H5N2)) segment 4 hemagglutinin (HA) gene,
            complete cds.
ACCESSION   KU201728
VERSION     KU201728.1  GI:965569100
KEYWORDS    .
SOURCE      Influenza A virus (A/American green-winged
            teal/Idaho/AH0011899/2015(H5N2))
  ORGANISM  Influenza A virus (A/American green-winged
            teal/Idaho/AH0011899/2015(H5N2))
            Viruses; ssRNA viruses; ssRNA negative-strand viruses;
            Orthomyxoviridae; Influenzavirus A.
REFERENCE   1  (bases 1 to 1744)
  AUTHORS   Killian,M.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2015) Diagnostic Virology Laboratory, National
            Veterinary Services Laboratories (NVSL), USDA APHIS VS, 1920 Dayton
            Avenue, Ames, IA 50010, USA
COMMENT     GenBank Accession Numbers KU201725-KU201732 represent sequences
            from the 8 segments of Influenza A virus (A/American green-winged
            teal/Idaho/AH0011899/2015(H5N2)).
            
            ##Assembly-Data-START##
            Assembly Method       :: SeqMan NGen v. v4
            Sequencing Technology :: Illumina; IonTorrent
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1744
                     /organism="Influenza A virus (A/American green-winged
                     teal/Idaho/AH0011899/2015(H5N2))"
                     /mol_type="viral cRNA"
                     /strain="A/American green-winged
                     teal/Idaho/AH0011899/2015"
                     /serotype="H5N2"
                     /isolation_source="oropharyngeal/cloacal swab pool from
                     individual bird"
                     /host="American green-winged teal; hunter harvest"
                     /db_xref="taxon:1763692"
                     /segment="4"
                     /country="USA: Ada County, Idaho"
                     /collection_date="18-Jan-2015"
                     /note="NVSL 15-002896-4; EP1; Eurasian origin (EA-H5N8
                     clade 2.3.4.4)-North American reassortant"
     gene            17..1720
                     /gene="HA"
     CDS             17..1720
                     /gene="HA"
                     /function="receptor binding and fusion protein"
                     /codon_start=1
                     /product="hemagglutinin"
                     /protein_id="ALT19369.1"
                     /db_xref="GI:965569101"
                     /translation="MEKIVLLFAVISLVKSDQICIGYHANNSTKQVDTIMEKNVTVTH
                     AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA
                     NDLCYPGTLNDYEELKHLLSRINHFEKTLIIPRSSWPNHETSLGVSAACPYQGASSFF
                     RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAAEQTNLYKNPDTYVSVGT
                     STLNQRLVPKIATRSQVNGQSGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG
                     DSTIMKSEMEYGHCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR
                     NSPLRERRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG
                     VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE
                     RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPKYS
                     EEAILKREEISGVKLESIGTYQILSIYSTVASSLALAIIVAGLSLWMCSNGSLQCRIC
                     I"
     sig_peptide     17..64
                     /gene="HA"
     mat_peptide     65..1051
                     /gene="HA"
                     /product="HA1"
     mat_peptide     1052..1717
                     /gene="HA"
                     /product="HA2"
ORIGIN      
        1 ggttcaaggt gacaaaatgg agaaaatagt gcttcttttt gcagtgatta gccttgttaa
       61 aagtgatcag atttgcattg gttaccatgc aaacaactca acaaagcagg ttgacacgat
      121 aatggagaaa aacgtcactg ttacacatgc ccaagacata ctggaaaaga cacacaacgg
      181 gaagctctgc gatcttaatg gagtgaagcc cctgattcta aaggattgta gcgtagctgg
      241 gtggctcctt ggaaatccaa tgtgcgacga gttcatcagg gtaccggaat ggtcttacat
      301 cgtggagagg gctaacccag ccaacgacct ctgttaccca gggaccctca atgactatga
      361 ggaactgaaa cacctattga gcagaataaa tcattttgag aaaactctga tcatccccag
      421 gagttcttgg cccaatcatg aaacatcatt aggggtgagc gcagcatgtc cataccaggg
      481 agcatcctca tttttcagaa atgtggtatg gctcatcaaa aagaacgatg catacccgac
      541 aataaagata agctacaata ataccaatcg ggaagatctt ttgatactgt gggggattca
      601 tcattccaac aatgcagcag agcagacaaa tctctataaa aacccagaca cttatgtttc
      661 cgttgggaca tcaacattaa accagagatt ggtgccaaaa atagctacta gatcccaagt
      721 aaacgggcag agtggaagaa tggatttctt ctggacaatt ttaaaaccga atgatgcaat
      781 ccactttgag agtaatggaa atttcattgc tccagaatat gcatacaaaa ttgtcaagaa
      841 aggggactca acaattatga aaagtgaaat ggagtatggc cactgcaaca ccaaatgtca
      901 aactccaata ggggcgataa actctagcat gccattccac aatatacacc ctctcaccat
      961 cggggaatgc cccaaatacg tgaagtcaaa caaattagtc cttgcgactg ggctcagaaa
     1021 tagtcctcta agagaaagaa gaagaaaaag aggactattt ggagctatag cagggtttat
     1081 agagggagga tggcagggaa tggtagacgg ttggtatggg tatcatcata gcaatgagca
     1141 ggggagtggg tacgctgcag acaaagaatc aacccaaaag gcaatagatg gagttaccaa
     1201 taaggtcaac tcaatcattg acaaaatgaa cactcaattt gaggccgttg gaagggaatt
     1261 taataactta gaaaggagaa tagagaattt aaacaagaaa atggaagacg gattcctaga
     1321 tgtctggact tataatgctg aacttttagt tctcatggaa aatgagagaa ctctagattt
     1381 ccatgactca aatgtcaaga acctttacga caaagtccga ctacagctta gggataatgc
     1441 aaaggagctg ggtaatggtt gtttcgagtt ctatcacaaa tgtgataacg aatgtatgga
     1501 gagcgtaaga aatgggacgt atgactaccc taagtattca gaagaagcaa tattaaaaag
     1561 agaagaaata agcggagtga aattagaatc aataggaact taccagatac tgtcaattta
     1621 ttcaacagtg gcgagttccc tagcactggc aatcatagtg gctggtctat ctttatggat
     1681 gtgctctaat gggtcgttac aatgcagaat ttgcatctaa atttgtgagc tcagattgta
     1741 atta

niman · December 24, 2015

LOCUS       KU201736                1704 bp    cRNA    linear   VRL 22-DEC-2015
DEFINITION  Influenza A virus (A/American green-winged
            teal/Oregon/AH0012403/2015(H5N2)) segment 4 hemagglutinin (HA)
            gene, complete cds.
ACCESSION   KU201736
VERSION     KU201736.1  GI:965569060
KEYWORDS    .
SOURCE      Influenza A virus (A/American green-winged
            teal/Oregon/AH0012403/2015(H5N2))
  ORGANISM  Influenza A virus (A/American green-winged
            teal/Oregon/AH0012403/2015(H5N2))
            Viruses; ssRNA viruses; ssRNA negative-strand viruses;
            Orthomyxoviridae; Influenzavirus A.
REFERENCE   1  (bases 1 to 1704)
  AUTHORS   Killian,M.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2015) Diagnostic Virology Laboratory, National
            Veterinary Services Laboratories (NVSL), USDA APHIS VS, 1920 Dayton
            Avenue, Ames, IA 50010, USA
COMMENT     GenBank Accession Numbers KU201733-KU201740 represent sequences
            from the 8 segments of Influenza A virus (A/American green-winged
            teal/Oregon/AH0012403/2015(H5N2)).
            
            ##Assembly-Data-START##
            Assembly Method       :: SeqMan NGen v. v4
            Sequencing Technology :: Illumina; IonTorrent
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1704
                     /organism="Influenza A virus (A/American green-winged
                     teal/Oregon/AH0012403/2015(H5N2))"
                     /mol_type="viral cRNA"
                     /strain="A/American green-winged
                     teal/Oregon/AH0012403/2015"
                     /serotype="H5N2"
                     /isolation_source="oropharyngeal/cloacal swab pool from
                     individual bird"
                     /host="American green-winged teal; hunter harvest"
                     /db_xref="taxon:1763693"
                     /segment="4"
                     /country="USA: Lane County, Oregon"
                     /collection_date="14-Jan-2015"
                     /note="NVSL 15-002956-9; EP1; Eurasian origin (EA-H5N8
                     clade 2.3.4.4)-North American reassortant"
     gene            1..1704
                     /gene="HA"
     CDS             1..1704
                     /gene="HA"
                     /function="receptor binding and fusion protein"
                     /codon_start=1
                     /product="hemagglutinin"
                     /protein_id="ALT19357.1"
                     /db_xref="GI:965569061"
                     /translation="MEKIVLLFAVISLVKSDQICIGYHANNSTKQVDTIMEKNVTVTH
                     AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA
                     NDLCYPGTLNDYEELKHLLSRINHFEKTLIIPRSSWPNHETSLGVSAACPYQGASSFF
                     RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAAEQTNLYKNPDTYVSVGT
                     STLNQRLVPKIATRSQVNGQSGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG
                     DSTIMKSEMEYGHCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR
                     NSPLRERRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG
                     VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE
                     RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPKYS
                     EEAILKREEISGVKLESIGTYQILSIYSTVASSLALAIIVAGLSLWMCSNGSLQCRIC
                     I"
     sig_peptide     1..48
                     /gene="HA"
     mat_peptide     49..1035
                     /gene="HA"
                     /product="HA1"
     mat_peptide     1036..1701
                     /gene="HA"
                     /product="HA2"
ORIGIN      
        1 atggagaaaa tagtgcttct ttttgcagtg attagccttg ttaaaagtga tcagatttgc
       61 attggttacc atgcaaacaa ctcaacaaag caggttgaca cgataatgga gaaaaacgtc
      121 actgttacac atgcccaaga catactggaa aagacacaca acgggaagct ctgcgatctt
      181 aatggagtga agcccctgat tctaaaggat tgtagcgtag ctgggtggct ccttggaaat
      241 ccaatgtgcg acgagttcat cagggtaccg gaatggtctt acatcgtgga gagggctaac
      301 ccagccaacg acctctgtta cccagggacc ctcaatgact atgaggaact gaaacaccta
      361 ttgagcagaa taaatcattt tgagaaaact ctgatcatcc ccaggagttc ttggcccaat
      421 catgaaacat cattaggggt gagcgcagca tgtccatacc agggagcatc ctcatttttc
      481 agaaatgtgg tatggctcat caaaaagaac gatgcatacc cgacaataaa gataagctac
      541 aataatacca atcgggaaga tcttttgata ctgtggggga ttcatcattc caacaatgca
      601 gcagagcaga caaatctcta taaaaaccca gacacttatg tttccgttgg gacatcaaca
      661 ttaaaccaga gattggtgcc aaaaatagct actagatccc aagtaaacgg gcagagtgga
      721 agaatggatt tcttctggac aattttaaaa ccgaatgatg caatccactt tgagagtaat
      781 ggaaatttca ttgctccaga atatgcatac aaaattgtca agaaagggga ctcaacaatt
      841 atgaaaagtg aaatggagta tggccactgc aacaccaaat gtcaaactcc aataggggcg
      901 ataaactcta gcatgccatt ccacaatata caccctctca ccatcgggga atgccccaaa
      961 tacgtgaagt caaacaaatt agtccttgcg actgggctca gaaatagtcc tctaagagaa
     1021 agaagaagaa aaagaggact atttggagct atagcagggt ttatagaggg aggatggcag
     1081 ggaatggtag acggttggta tgggtatcat catagcaatg agcaggggag tgggtacgct
     1141 gcagacaaag aatcaaccca aaaggcaata gatggagtta ccaataaggt caactcaatc
     1201 attgacaaaa tgaacactca atttgaggcc gttggaaggg aatttaataa cttagaaagg
     1261 agaatagaga atttaaacaa gaaaatggaa gacggattcc tagatgtctg gacttataat
     1321 gctgaacttt tagttctcat ggaaaatgag agaactctag atttccatga ctcaaatgtc
     1381 aagaaccttt acgacaaagt ccgactacag cttagggata atgcaaagga gctgggtaat
     1441 ggttgtttcg agttctatca caaatgtgat aacgaatgta tggagagcgt aagaaatggg
     1501 acgtatgact accctaagta ttcagaagaa gcaatattaa aaagagaaga aataagcgga
     1561 gtgaaattag aatcaatagg aacttaccag atactgtcaa tttattcaac agtggcgagt
     1621 tccctagcac tggcaatcat agtggctggt ctatctttat ggatgtgctc taatgggtcg
     1681 ttacaatgca gaatttgcat ctaa

niman · December 24, 2015

LOCUS       KU201744                1704 bp    cRNA    linear   VRL 22-DEC-2015
DEFINITION  Influenza A virus (A/Canada goose/Oregon/AH0012452/2015(H5N8))
            segment 4 hemagglutinin (HA) gene, complete cds.
ACCESSION   KU201744
VERSION     KU201744.1  GI:965569024
KEYWORDS    .
SOURCE      Influenza A virus (A/Canada goose/Oregon/AH0012452/2015(H5N8))
  ORGANISM  Influenza A virus (A/Canada goose/Oregon/AH0012452/2015(H5N8))
            Viruses; ssRNA viruses; ssRNA negative-strand viruses;
            Orthomyxoviridae; Influenzavirus A.
REFERENCE   1  (bases 1 to 1704)
  AUTHORS   Killian,M.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2015) Diagnostic Virology Laboratory, National
            Veterinary Services Laboratories (NVSL), USDA APHIS VS, 1920 Dayton
            Avenue, Ames, IA 50010, USA
COMMENT     GenBank Accession Numbers KU201741-KU201748 represent sequences
            from the 8 segments of Influenza A virus (A/Canada
            goose/Oregon/AH0012452/2015(H5N8)).
            
            ##Assembly-Data-START##
            Assembly Method       :: SeqMan NGen v. v4
            Sequencing Technology :: Illumina; IonTorrent
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1704
                     /organism="Influenza A virus (A/Canada
                     goose/Oregon/AH0012452/2015(H5N8))"
                     /mol_type="viral cRNA"
                     /strain="A/Canada goose/Oregon/AH0012452/2015"
                     /serotype="H5N8"
                     /isolation_source="oropharyngeal/cloacal swab pool from
                     individual bird"
                     /host="Canada goose; hunter harvest"
                     /db_xref="taxon:1763701"
                     /segment="4"
                     /country="USA: Klamath County, Oregon"
                     /collection_date="18-Jan-2015"
                     /note="NVSL 15-002957-4; EP1; Eurasian origin (EA-H5N8
                     clade 2.3.4.4)-North American reassortant"
     gene            1..1704
                     /gene="HA"
     CDS             1..1704
                     /gene="HA"
                     /function="receptor binding and fusion protein"
                     /codon_start=1
                     /product="hemagglutinin"
                     /protein_id="ALT19345.1"
                     /db_xref="GI:965569025"
                     /translation="MEKIVLLLAVISLVKSDQICIGYHANNSTKQVDTIMEKNVTVTH
                     AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA
                     NDLCYPGTLNDYEELKHLLSRINHFEKTLIIPRSSWPNHETSLGVSAACPYQGASSFF
                     RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAAEQTNLYKNPDTYVSVGT
                     STLNQRLVPKIATRSRVNGQSGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIIKKG
                     DSTIMKSEMEYGHCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR
                     NSPLRERRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG
                     VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE
                     RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPKYS
                     EEAILKREEISGVKLESIGTYQILSIYSTVASSLALAIIVAGLSLWMCSNGSLQCRIC
                     I"
     sig_peptide     1..48
                     /gene="HA"
     mat_peptide     49..1035
                     /gene="HA"
                     /product="HA1"
     mat_peptide     1036..1701
                     /gene="HA"
                     /product="HA2"
ORIGIN      
        1 atggagaaaa tagtgcttct tcttgcagtg attagccttg ttaaaagtga tcagatttgc
       61 attggttacc atgcaaacaa ctcaacaaag caggttgaca cgataatgga gaaaaacgtc
      121 actgttacac atgcccaaga catactggaa aagacacaca acgggaagct ctgcgatctt
      181 aatggagtga agcccctgat tctaaaggat tgtagcgtag ctgggtggct ccttggaaat
      241 ccaatgtgcg acgagtttat cagggtaccg gaatggtctt acatcgtgga gagggctaac
      301 ccagccaacg acctctgtta cccagggacc ctcaatgact atgaggaact gaaacaccta
      361 ttgagcagaa taaatcattt tgagaaaact ctgatcatcc ccaggagttc ttggcccaat
      421 catgaaacat cattaggggt gagcgcagca tgtccatacc agggagcatc ctcatttttc
      481 agaaatgtgg tatggctcat caaaaagaac gatgcatacc cgacaataaa gataagctac
      541 aataatacca atcgggaaga tcttttgata ctgtggggga ttcatcattc caacaatgca
      601 gcagagcaga caaatctcta taaaaaccca gacacttatg tttccgttgg gacatcaaca
      661 ttaaaccaga gattggtgcc aaaaatagct actagatccc gagtaaacgg gcagagtgga
      721 agaatggatt tcttctggac aattttaaaa ccgaatgatg caatccactt tgagagtaat
      781 ggaaatttca ttgctccaga atatgcatac aaaattatca agaaagggga ctcaacaatt
      841 atgaaaagtg aaatggagta tggccactgc aacaccaaat gtcaaactcc aataggggct
      901 ataaactcta gcatgccatt ccacaatata caccctctca ccatcgggga atgccccaaa
      961 tacgtgaagt caaacaaatt agtccttgcg actgggctca gaaatagtcc tctaagagaa
     1021 agaagaagaa aaagaggact atttggagct atagcagggt ttatagaggg aggatggcag
     1081 ggaatggtag acggttggta tgggtatcat catagcaatg agcaggggag tgggtacgct
     1141 gcagacaaag aatccaccca aaaggcaata gatggagtta ccaataaggt caactcaatc
     1201 attgacaaaa tgaacactca atttgaggcc gttggaaggg aatttaataa cttagaaagg
     1261 agaatagaga atttaaacaa gaaaatggaa gacggattcc tagatgtctg gacttataat
     1321 gctgaacttt tagttctcat ggaaaatgag agaactctag atttccatga ctcaaatgtc
     1381 aagaaccttt acgacaaagt ccgactacag cttagggata atgcaaagga gctgggtaat
     1441 ggttgtttcg agttctatca caaatgtgat aacgaatgta tggagagcgt aagaaatggg
     1501 acgtatgact accctaagta ttcagaagaa gcaatattaa aaagagaaga aataagcgga
     1561 gtgaaattag aatcaatagg aacttaccag atactgtcaa tttattcaac agtggcgagt
     1621 tccctagcac tggcaatcat agtggctggt ttatctttat ggatgtgctc taatgggtcg
     1681 ttacaatgca gaatttgcat ctaa

niman · December 24, 2015

LOCUS       KU201752                1704 bp    cRNA    linear   VRL 22-DEC-2015
DEFINITION  Influenza A virus (A/American wigeon/Oregon/AH0012525/2015(H5N8))
            segment 4 hemagglutinin (HA) gene, complete cds.
ACCESSION   KU201752
VERSION     KU201752.1  GI:965568983
KEYWORDS    .
SOURCE      Influenza A virus (A/American wigeon/Oregon/AH0012525/2015(H5N8))
  ORGANISM  Influenza A virus (A/American wigeon/Oregon/AH0012525/2015(H5N8))
            Viruses; ssRNA viruses; ssRNA negative-strand viruses;
            Orthomyxoviridae; Influenzavirus A.
REFERENCE   1  (bases 1 to 1704)
  AUTHORS   Killian,M.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2015) Diagnostic Virology Laboratory, National
            Veterinary Services Laboratories (NVSL), USDA APHIS VS, 1920 Dayton
            Avenue, Ames, IA 50010, USA
COMMENT     GenBank Accession Numbers KU201749-KU201756 represent sequences
            from the 8 segments of Influenza A virus (A/American
            wigeon/Oregon/AH0012525/2015(H5N8)).
            
            ##Assembly-Data-START##
            Assembly Method       :: SeqMan NGen v. v4
            Sequencing Technology :: Illumina; IonTorrent
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1704
                     /organism="Influenza A virus (A/American
                     wigeon/Oregon/AH0012525/2015(H5N8))"
                     /mol_type="viral cRNA"
                     /strain="A/American wigeon/Oregon/AH0012525/2015"
                     /serotype="H5N8"
                     /isolation_source="oropharyngeal/cloacal swab pool from
                     individual bird"
                     /host="American wigeon; hunter harvest"
                     /db_xref="taxon:1763694"
                     /segment="4"
                     /country="USA: Klamath County, Oregon"
                     /collection_date="18-Jan-2015"
                     /note="NVSL 15-002957-11; EP1; Eurasian origin (EA-H5N8
                     clade 2.3.4.4)-North American reassortant"
     gene            1..1704
                     /gene="HA"
     CDS             1..1704
                     /gene="HA"
                     /function="receptor binding and fusion protein"
                     /codon_start=1
                     /product="hemagglutinin"
                     /protein_id="ALT19333.1"
                     /db_xref="GI:965568984"
                     /translation="MEKIVLLLAVISLVKSDQICIGYHANNSTKQVDTIMEKNVTVTH
                     AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA
                     NDLCYPGTLNDYEELKHLLSRINHFEKTLIIPRSSWPNHETSLGVSAACPYQGASSFF
                     RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAAEQTNLYKNPDTYVSVGT
                     STLNQRLVPKIATRSQVNGQSGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG
                     DSTIMKSEMEYGHCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR
                     NSPLRERRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG
                     VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE
                     RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECIESVRNGTYDYPKYS
                     EEAILKREEISGVKLESIGTYQILSIYSTVASSLALAIIVAGLSLWMCSNGSLQCRIC
                     I"
     sig_peptide     1..48
                     /gene="HA"
     mat_peptide     49..1035
                     /gene="HA"
                     /product="HA1"
     mat_peptide     1036..1701
                     /gene="HA"
                     /product="HA2"
ORIGIN      
        1 atggagaaaa tagtgcttct tcttgcagtg attagccttg ttaaaagtga tcagatttgc
       61 attggttacc atgcaaacaa ctcaacaaag caggttgaca cgataatgga gaaaaacgtc
      121 actgttacac atgcccaaga catactggaa aagacacaca acgggaagct ctgcgatctt
      181 aatggagtga agcccctgat tctaaaggat tgtagcgtag ctgggtggct ccttggaaat
      241 ccaatgtgcg acgagtttat cagggtaccg gaatggtctt acatcgtgga gagggctaac
      301 ccagccaacg acctctgtta cccagggacc ctcaatgact atgaggaact gaaacaccta
      361 ttgagcagaa taaatcattt tgagaaaact ctgatcatcc ccaggagttc ttggcccaat
      421 catgaaacat cattaggggt gagcgcagca tgtccatacc agggagcatc ctcatttttc
      481 agaaatgtgg tatggctcat caaaaagaac gatgcatacc cgacaataaa gataagctac
      541 aataatacca atcgggaaga tcttttgata ctgtggggga ttcatcattc caacaatgca
      601 gcagagcaga caaatctcta taaaaaccca gacacttatg tttccgttgg gacatcaaca
      661 ttaaaccaga gattggtgcc aaaaatagct actagatccc aagtaaacgg gcagagtgga
      721 agaatggatt tcttctggac aattttaaaa ccgaatgatg caatccactt tgagagtaat
      781 ggaaatttca ttgctccaga atatgcatac aaaattgtca agaaagggga ttcaacaatt
      841 atgaaaagtg aaatggagta tggccactgc aacaccaaat gtcaaactcc aataggggct
      901 ataaactcta gcatgccatt ccacaatata caccctctca ccatcgggga atgccccaaa
      961 tacgtgaagt caaacaaatt agtccttgcg actgggctca gaaatagtcc tctaagagaa
     1021 agaagaagaa aaagaggact atttggagct atagcagggt ttatagaggg aggatggcag
     1081 ggaatggtag acggttggta tgggtatcat catagcaatg agcaggggag tgggtacgct
     1141 gcagacaaag aatccaccca aaaggcaata gatggagtta ccaataaggt caactcaatc
     1201 attgacaaaa tgaacactca atttgaggcc gttggaaggg aatttaataa cttagaaagg
     1261 agaatagaga atttaaacaa gaaaatggaa gacggattcc tagatgtctg gacttataat
     1321 gctgaacttt tagttctcat ggaaaatgag agaactctag atttccatga ctcaaatgtc
     1381 aagaaccttt acgacaaagt ccgactacag cttagggata atgcaaagga gctgggtaat
     1441 ggttgtttcg agttctatca caaatgtgat aacgaatgta tagagagcgt aagaaatggg
     1501 acgtatgact accctaagta ttcagaagaa gcaatattaa aaagagaaga aataagcgga
     1561 gtgaaattag aatcaatagg aacttaccag atactgtcaa tttattcaac agtggcgagt
     1621 tccctagcac tggcaatcat agtggctggt ttatctttat ggatgtgctc taatgggtcg
     1681 ttacaatgca gaatttgcat ctaa

niman · December 24, 2015

LOCUS       KU201760                1704 bp    cRNA    linear   VRL 22-DEC-2015
DEFINITION  Influenza A virus (A/mallard/Nevada/AH0006855/2015(H5N8)) segment 4
            hemagglutinin (HA) gene, complete cds.
ACCESSION   KU201760
VERSION     KU201760.1  GI:965568943
KEYWORDS    .
SOURCE      Influenza A virus (A/mallard/Nevada/AH0006855/2015(H5N8))
  ORGANISM  Influenza A virus (A/mallard/Nevada/AH0006855/2015(H5N8))
            Viruses; ssRNA viruses; ssRNA negative-strand viruses;
            Orthomyxoviridae; Influenzavirus A.
REFERENCE   1  (bases 1 to 1704)
  AUTHORS   Killian,M.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2015) Diagnostic Virology Laboratory, National
            Veterinary Services Laboratories (NVSL), USDA APHIS VS, 1920 Dayton
            Avenue, Ames, IA 50010, USA
COMMENT     GenBank Accession Numbers KU201757-KU201764 represent sequences
            from the 8 segments of Influenza A virus
            (A/mallard/Nevada/AH0006855/2015(H5N8)).
            
            ##Assembly-Data-START##
            Assembly Method       :: SeqMan NGen v. v4
            Sequencing Technology :: Illumina; IonTorrent
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1704
                     /organism="Influenza A virus
                     (A/mallard/Nevada/AH0006855/2015(H5N8))"
                     /mol_type="viral cRNA"
                     /strain="A/mallard/Nevada/AH0006855/2015"
                     /serotype="H5N8"
                     /isolation_source="oropharyngeal/cloacal swab pool from
                     individual bird"
                     /host="mallard; hunter harvest"
                     /db_xref="taxon:1763718"
                     /segment="4"
                     /country="USA: Churchill County, Nevada"
                     /collection_date="23-Jan-2015"
                     /note="NVSL 15-003133-3; EP1; Eurasian origin H5N8 clade
                     2.3.4.4"
     gene            1..1704
                     /gene="HA"
     CDS             1..1704
                     /gene="HA"
                     /function="receptor binding and fusion protein"
                     /codon_start=1
                     /product="hemagglutinin"
                     /protein_id="ALT19322.1"
                     /db_xref="GI:965568944"
                     /translation="MEKIVLLLAVISLVKSDQICIGYHANNSTKQVDTIMEKNVTVTH
                     AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA
                     NDLCYPGTLNDYEELKHLLSRINHFEKTLIIPRSSWPNHETSLGVSAACPYQGASSFF
                     RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAAEQTNLYKNPDTYVSVGT
                     STLNQRLVPKIATRSQVNGQSGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG
                     DSTIMKSEMEYGHCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR
                     NSPLRERRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG
                     VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE
                     RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPKYS
                     EEAILKREEISGVKLESIGTYQILSIYSTVASSLALAIIVAGLSLWMCSNGSLQCRIC
                     I"
     sig_peptide     1..48
                     /gene="HA"
     mat_peptide     49..1035
                     /gene="HA"
                     /product="HA1"
     mat_peptide     1036..1701
                     /gene="HA"
                     /product="HA2"
ORIGIN      
        1 atggagaaaa tagtgcttct tcttgcagtg attagccttg ttaaaagtga tcagatttgc
       61 attggttacc atgcaaacaa ctcaacaaag caggttgaca cgataatgga gaaaaacgtc
      121 actgttacac atgcccaaga catactggaa aagacacaca acgggaagct ctgcgatctt
      181 aatggagtga agcccctgat tctaaaggat tgtagcgtag ctgggtggct ccttggaaat
      241 ccaatgtgcg acgagttcat cagggtaccg gaatggtctt acatcgtgga gagggctaat
      301 ccagccaacg acctatgtta cccagggacc ctcaatgact atgaggaact gaaacaccta
      361 ttgagcagaa taaatcattt tgagaaaact ctgatcatcc ccaggagttc ttggcccaat
      421 catgaaacat cattaggggt gagcgcagca tgtccatacc agggagcatc ctcatttttc
      481 agaaatgtgg tatggctcat caaaaagaac gatgcatacc cgacaataaa gataagctac
      541 aataatacca atcgggaaga tcttttgata ctgtggggga ttcatcattc caacaatgca
      601 gcagagcaga caaatctcta taaaaaccca gacacttatg tttccgttgg gacatcaaca
      661 ttaaaccaga gattggtgcc aaaaatagct actagatccc aagtaaacgg gcagagtgga
      721 agaatggatt tcttctggac aattttaaaa ccgaatgatg caatccactt tgagagtaat
      781 ggaaatttca ttgctccaga atatgcatac aaaattgtca agaaagggga ctcaacaatt
      841 atgaaaagtg aaatggagta tggccactgc aacaccaaat gtcaaactcc aataggggcg
      901 ataaactcta gcatgccatt ccacaatata caccctctca ccatcgggga atgccccaaa
      961 tacgtgaagt caaacaaatt agtccttgcg actgggctca gaaatagtcc tctaagagaa
     1021 agaagaagaa aaagaggact atttggagct atagcagggt ttatagaggg aggatggcag
     1081 ggaatggtag acggttggta tgggtatcat catagcaatg agcaggggag tgggtacgct
     1141 gcagacaaag aatccaccca aaaggcaata gatggagtta ccaataaggt caactcaatc
     1201 attgacaaaa tgaacactca atttgaggcc gttggaaggg aatttaataa cttagaaagg
     1261 agaatagaga atttaaacaa gaaaatggaa gacggattcc tagatgtctg gacttataat
     1321 gctgaacttt tagttctcat ggaaaatgag agaactctag attttcatga ctcaaatgtc
     1381 aagaaccttt acgacaaagt ccgactacag cttagggata atgcaaagga gctgggcaat
     1441 ggttgtttcg agttctatca caaatgtgat aacgaatgta tggagagcgt aagaaatggg
     1501 acgtatgact accctaagta ttcagaagaa gcaatattaa aaagagaaga aataagcgga
     1561 gtgaaattag aatcaatagg aacttaccag atactgtcaa tttattcaac agtggcgagt
     1621 tccctagcac tggcaatcat agtggctggt ctatctttat ggatgtgctc taatgggtcg
     1681 ttacaatgca gaatttgcat ctaa

niman · December 24, 2015

LOCUS       KU201768                1704 bp    cRNA    linear   VRL 22-DEC-2015
DEFINITION  Influenza A virus (A/mallard/Idaho/AH0005954/2014(H5N8)) segment 4
            hemagglutinin (HA) gene, complete cds.
ACCESSION   KU201768
VERSION     KU201768.1  GI:965568892
KEYWORDS    .
SOURCE      Influenza A virus (A/mallard/Idaho/AH0005954/2014(H5N8))
  ORGANISM  Influenza A virus (A/mallard/Idaho/AH0005954/2014(H5N8))
            Viruses; ssRNA viruses; ssRNA negative-strand viruses;
            Orthomyxoviridae; Influenzavirus A.
REFERENCE   1  (bases 1 to 1704)
  AUTHORS   Killian,M.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2015) Diagnostic Virology Laboratory, National
            Veterinary Services Laboratories (NVSL), USDA APHIS VS, 1920 Dayton
            Avenue, Ames, IA 50010, USA
COMMENT     GenBank Accession Numbers KU201765-KU201772 represent sequences
            from the 8 segments of Influenza A virus
            (A/mallard/Idaho/AH0005954/2014(H5N8)).
            
            ##Assembly-Data-START##
            Assembly Method       :: SeqMan NGen v. v4
            Sequencing Technology :: Illumina; IonTorrent
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1704
                     /organism="Influenza A virus
                     (A/mallard/Idaho/AH0005954/2014(H5N8))"
                     /mol_type="viral cRNA"
                     /strain="A/mallard/Idaho/AH0005954/2014"
                     /serotype="H5N8"
                     /isolation_source="oropharyngeal/cloacal swab pool from
                     individual bird"
                     /host="mallard; hunter harvest"
                     /db_xref="taxon:1763713"
                     /segment="4"
                     /country="USA: Bingham County, Idaho"
                     /collection_date="22-Dec-2014"
                     /note="NVSL 15-003516-2; EP1; Eurasian origin H5N8 clade
                     2.3.4.4"
     gene            1..1704
                     /gene="HA"
     CDS             1..1704
                     /gene="HA"
                     /function="receptor binding and fusion protein"
                     /codon_start=1
                     /product="hemagglutinin"
                     /protein_id="ALT19310.1"
                     /db_xref="GI:965568893"
                     /translation="MEKIVLLLAVISLVKSDQICIGYHANNSTKQVDTIMEKNVTVTH
                     AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA
                     NDLCYPGTLNDYEELKHLLSRINHFEKTLIIPRSSWPNHETSLGVSAACPYQGASSFF
                     RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAAEQTNLYKNPDTYVSVGT
                     STLNQRLVPKIATRSQVNGQSGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG
                     DSTIMKSEMEYGHCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR
                     NSPLRERRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG
                     VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE
                     RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPKYS
                     EEAILKREEISGVKLESIGTYQILSIYSTVASSLALAIIVAGLSLWMCSNGSLQCRIC
                     I"
     sig_peptide     1..48
                     /gene="HA"
     mat_peptide     49..1035
                     /gene="HA"
                     /product="HA1"
     mat_peptide     1036..1701
                     /gene="HA"
                     /product="HA2"
ORIGIN      
        1 atggagaaaa tagtgcttct tcttgcagtg attagccttg ttaaaagtga tcagatttgc
       61 attggttacc atgcaaacaa ctcaacaaag caggttgaca cgataatgga gaaaaacgtc
      121 actgttacac atgcccaaga catactggaa aagacacaca acgggaagct ctgcgatctt
      181 aatggagtga agcccctgat tctaaaggat tgtagcgtag ctgggtggct ccttggaaat
      241 ccaatgtgcg acgagttcat cagggtaccg gaatggtctt acatcgtgga gagggctaat
      301 ccagccaacg acctatgtta cccagggacc ctcaatgact atgaggaact gaaacaccta
      361 ttgagcagaa taaatcattt tgagaaaact ctgatcatcc ccaggagttc ttggcccaat
      421 catgaaacat cattaggggt gagcgcagca tgtccatacc agggagcatc ctcatttttc
      481 agaaatgtgg tatggctcat caaaaagaac gatgcatacc cgacaataaa gataagctac
      541 aataatacca atcgggaaga tcttttgata ctgtggggga ttcatcattc caacaatgca
      601 gcagagcaga caaatctcta taaaaaccca gacacttatg tttccgttgg gacatcaaca
      661 ttaaaccaga gattggtgcc aaaaatagct actagatccc aagtaaacgg gcagagtgga
      721 agaatggatt tcttctggac aattttaaaa ccgaatgatg caatccactt tgagagtaat
      781 gggaacttca ttgctccaga atatgcatac aaaattgtca agaaagggga ctcaacaatt
      841 atgaaaagtg aaatggagta tggccactgc aacaccaaat gtcaaactcc aataggggcg
      901 ataaactcta gcatgccatt ccacaatata caccctctca ccatcgggga atgccccaaa
      961 tacgtgaagt caaacaaatt agtccttgcg actgggctca gaaatagtcc tctaagagaa
     1021 agaagaagaa aaagaggact atttggagct atagcagggt ttatagaggg aggatggcag
     1081 ggaatggtag acggttggta tgggtatcat catagcaatg agcaggggag tgggtacgct
     1141 gcagacaaag aatccaccca aaaggcaata gatggagtta ccaataaggt caactcaatc
     1201 attgacaaaa tgaacactca atttgaggcc gttggaaggg aatttaataa cttagaaagg
     1261 agaatagaga atttaaacaa gaaaatggaa gacggattcc tagatgtctg gacttataat
     1321 gctgaacttt tagttctcat ggaaaatgag agaactctag attttcatga ctcaaatgtc
     1381 aagaaccttt acgacaaagt ccgactacag cttagggata atgcaaagga gctgggcaat
     1441 ggttgtttcg agttctatca caaatgtgat aacgaatgta tggagagcgt aagaaatggg
     1501 acgtatgact accctaagta ttcagaagaa gcaatattaa aaagagaaga aataagcgga
     1561 gtgaaattag aatcaatagg aacttaccag atactgtcaa tttattcaac agtggcgagt
     1621 tccctagcac tggcaatcat agtggctggt ctatctttat ggatgtgctc taatgggtcg
     1681 ttacaatgca gaatttgcat ctaa

niman · December 24, 2015

LOCUS       KU201776                1704 bp    cRNA    linear   VRL 22-DEC-2015
DEFINITION  Influenza A virus (A/mallard/Idaho/AH0005955/2014(H5N8)) segment 4
            hemagglutinin (HA) gene, complete cds.
ACCESSION   KU201776
VERSION     KU201776.1  GI:965568846
KEYWORDS    .
SOURCE      Influenza A virus (A/mallard/Idaho/AH0005955/2014(H5N8))
  ORGANISM  Influenza A virus (A/mallard/Idaho/AH0005955/2014(H5N8))
            Viruses; ssRNA viruses; ssRNA negative-strand viruses;
            Orthomyxoviridae; Influenzavirus A.
REFERENCE   1  (bases 1 to 1704)
  AUTHORS   Killian,M.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2015) Diagnostic Virology Laboratory, National
            Veterinary Services Laboratories (NVSL), USDA APHIS VS, 1920 Dayton
            Avenue, Ames, IA 50010, USA
COMMENT     GenBank Accession Numbers KU201773-KU201780 represent sequences
            from the 8 segments of Influenza A virus
            (A/mallard/Idaho/AH0005955/2014(H5N8)).
            
            ##Assembly-Data-START##
            Assembly Method       :: SeqMan NGen v. v4
            Sequencing Technology :: Illumina; IonTorrent
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1704
                     /organism="Influenza A virus
                     (A/mallard/Idaho/AH0005955/2014(H5N8))"
                     /mol_type="viral cRNA"
                     /strain="A/mallard/Idaho/AH0005955/2014"
                     /serotype="H5N8"
                     /isolation_source="oropharyngeal/cloacal swab pool from
                     individual bird"
                     /host="mallard; hunter harvest"
                     /db_xref="taxon:1763714"
                     /segment="4"
                     /country="USA: Bingham County, Idaho"
                     /collection_date="22-Dec-2014"
                     /note="NVSL 15-003516-3; EP1; Eurasian origin H5N8 clade
                     2.3.4.4"
     gene            1..1704
                     /gene="HA"
     CDS             1..1704
                     /gene="HA"
                     /function="receptor binding and fusion protein"
                     /codon_start=1
                     /product="hemagglutinin"
                     /protein_id="ALT19298.1"
                     /db_xref="GI:965568847"
                     /translation="MEKIVLLLAVISLVKSDQICIGYHANNSTKQVDTIMEKNVTVTH
                     AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA
                     NDLCYPGTLNDYEELKHLLSRINHFEKTLIIPRSSWPNHETSLGVSAACPYQGASSFF
                     RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAAEQTNLYKNPDTYVSVGT
                     STLNQRLVPKIATRSQVNGQSGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG
                     DSTIMKSEMEYGHCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR
                     NSPLRERRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG
                     VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE
                     RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPKYS
                     EEAILKREEISGVKLESIGTYQILSIYSTVASSLALAIIVAGLSLWMCSNGSLQCRIC
                     I"
     sig_peptide     1..48
                     /gene="HA"
     mat_peptide     49..1035
                     /gene="HA"
                     /product="HA1"
     mat_peptide     1036..1701
                     /gene="HA"
                     /product="HA2"
ORIGIN      
        1 atggagaaaa tagtgcttct tcttgcagtg attagccttg ttaaaagtga tcagatttgc
       61 attggttacc atgcaaacaa ctcaacaaag caggttgaca cgataatgga gaaaaacgtc
      121 actgttacac atgcccaaga catactggaa aagacacaca acgggaagct ctgcgatctt
      181 aatggagtga agcccctgat tctaaaggat tgtagcgtag ctgggtggct ccttggaaat
      241 ccaatgtgcg acgagttcat cagggtaccg gaatggtctt acatcgtgga gagggctaat
      301 ccagccaacg acctatgtta cccagggacc ctcaatgact atgaggaact gaaacaccta
      361 ttgagcagaa taaatcattt tgagaaaact ctgatcatcc ccaggagttc ttggcccaat
      421 catgaaacat cattaggggt gagcgcagca tgtccatacc agggagcatc ctcatttttc
      481 agaaatgtgg tatggctcat caaaaagaac gatgcatacc cgacaataaa gataagctac
      541 aataatacca atcgggaaga tcttttgata ctgtggggga ttcatcattc caacaatgca
      601 gcagagcaga caaatctcta taaaaaccca gacacttatg tttccgttgg gacatcaaca
      661 ttaaaccaga gattggtgcc aaaaatagct actagatccc aagtaaacgg gcagagtgga
      721 agaatggatt tcttctggac aattttaaaa ccgaatgatg caatccactt tgagagtaat
      781 ggaaatttca ttgctccaga atatgcatac aaaattgtca agaaagggga ctcaacaatt
      841 atgaaaagtg aaatggagta tggccactgc aacaccaaat gtcaaactcc aataggggcg
      901 ataaactcta gcatgccatt ccacaatata caccctctca ccatcgggga atgccccaaa
      961 tacgtgaagt caaacaaatt agtccttgcg actgggctca gaaatagtcc tctaagagaa
     1021 agaagaagaa aaagaggact atttggagct atagcagggt ttatagaggg aggatggcag
     1081 ggaatggtag acggttggta tgggtatcat catagcaatg agcaggggag tgggtacgct
     1141 gcagacaaag aatccaccca aaaggcaata gatggagtta ccaataaggt caactcaatc
     1201 attgacaaaa tgaacactca atttgaggcc gttggaaggg aatttaataa cttagaaagg
     1261 agaatagaga atttaaacaa gaaaatggaa gacggattcc tagatgtctg gacttataat
     1321 gctgaacttt tagttctcat ggaaaatgag agaactctag attttcatga ctcaaatgtc
     1381 aagaaccttt acgacaaagt ccgactacag cttagggata atgcaaagga gctgggcaat
     1441 ggttgtttcg agttctatca caaatgtgat aacgaatgta tggagagcgt aagaaatggg
     1501 acgtatgact accctaagta ttcagaagaa gcaatattaa aaagagaaga aataagcgga
     1561 gtgaaattag aatcaatagg aacttaccag atactgtcaa tttattcaac agtggcgagt
     1621 tccctagcac tggcaatcat agtggctggt ctatctttat ggatgtgctc taatgggtcg
     1681 ttacaatgca gaatttgcat ctaa

niman · December 24, 2015

LOCUS       KU201784                1744 bp    cRNA    linear   VRL 22-DEC-2015
DEFINITION  Influenza A virus (A/mallard/Oregon/AH0003821/2014(H5N2)) segment 4
            hemagglutinin (HA) gene, complete cds.
ACCESSION   KU201784
VERSION     KU201784.1  GI:965568803
KEYWORDS    .
SOURCE      Influenza A virus (A/mallard/Oregon/AH0003821/2014(H5N2))
  ORGANISM  Influenza A virus (A/mallard/Oregon/AH0003821/2014(H5N2))
            Viruses; ssRNA viruses; ssRNA negative-strand viruses;
            Orthomyxoviridae; Influenzavirus A.
REFERENCE   1  (bases 1 to 1744)
  AUTHORS   Killian,M.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2015) Diagnostic Virology Laboratory, National
            Veterinary Services Laboratories (NVSL), USDA APHIS VS, 1920 Dayton
            Avenue, Ames, IA 50010, USA
COMMENT     GenBank Accession Numbers KU201781-KU201788 represent sequences
            from the 8 segments of Influenza A virus
            (A/mallard/Oregon/AH0003821/2014(H5N2)).
            
            ##Assembly-Data-START##
            Assembly Method       :: SeqMan NGen v. v4
            Sequencing Technology :: Illumina; IonTorrent
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1744
                     /organism="Influenza A virus
                     (A/mallard/Oregon/AH0003821/2014(H5N2))"
                     /mol_type="viral cRNA"
                     /strain="A/mallard/Oregon/AH0003821/2014"
                     /serotype="H5N2"
                     /isolation_source="oropharyngeal/cloacal swab pool from
                     individual bird"
                     /host="mallard; hunter harvest"
                     /db_xref="taxon:1763721"
                     /segment="4"
                     /country="USA: Lane County, Oregon"
                     /collection_date="20-Dec-2014"
                     /note="NVSL 14-042650-2; EP1; Eurasian origin (EA-H5N8
                     clade 2.3.4.4)-North American reassortant"
     gene            17..1720
                     /gene="HA"
     CDS             17..1720
                     /gene="HA"
                     /function="receptor binding and fusion protein"
                     /codon_start=1
                     /product="hemagglutinin"
                     /protein_id="ALT19286.1"
                     /db_xref="GI:965568804"
                     /translation="MEKIVLLFAVISLVKSDQICIGYHANNSTKQVDTIMEKNVTVTH
                     AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA
                     NDLCYPGTLNDYEELKHLLSRINHFEKTLIIPRSSWPNHETSLGVSAACPYQGASSFF
                     RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAAEQTNLYKNPDTYVSVGT
                     STLNQRLVPKIATRSQVNGQSGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG
                     DSTIMKSEMEYGHCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR
                     NSPLRERRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG
                     VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE
                     RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPKYS
                     EEAILKREEISGVKLESIGTYQILSIYSTVASSLALAIIVAGLSLWMCSNGSLQCRIC
                     I"
     sig_peptide     17..64
                     /gene="HA"
     mat_peptide     65..1051
                     /gene="HA"
                     /product="HA1"
     mat_peptide     1052..1717
                     /gene="HA"
                     /product="HA2"
ORIGIN      
        1 ggttcaatct gtcaaaatgg agaaaatagt gcttcttttt gcagtgatta gccttgttaa
       61 aagtgatcag atttgcattg gttaccatgc aaacaactca acaaagcagg ttgacacgat
      121 aatggagaaa aacgtcactg ttacacatgc ccaagacata ctggaaaaga cacacaacgg
      181 gaagctctgc gatcttaatg gagtgaagcc cctgattcta aaggattgta gcgtagctgg
      241 gtggctcctt ggaaatccaa tgtgcgacga gttcatcagg gtaccggaat ggtcttacat
      301 cgtggagagg gctaacccag ccaacgacct ctgttaccca gggaccctca atgactatga
      361 ggaactgaaa cacctattga gcagaataaa tcattttgag aaaactctga tcatccccag
      421 gagttcttgg cccaatcatg aaacatcatt aggggtgagc gcagcatgtc cataccaggg
      481 agcatcctca tttttcagaa atgtggtatg gctcatcaaa aagaacgatg catacccgac
      541 aataaagata agctacaata ataccaatcg ggaagatctt ttgatactgt gggggattca
      601 tcattccaac aatgcagcag agcagacaaa tctctataaa aacccagaca cttatgtttc
      661 cgttgggaca tcaacattaa accagagatt ggtgccaaaa atagctacta gatcccaagt
      721 aaacgggcag agtggaagaa tggatttctt ctggacaatt ttaaaaccga atgatgcaat
      781 ccactttgag agtaatggaa atttcattgc tccagaatat gcatacaaaa ttgtcaagaa
      841 aggggactca acaattatga aaagtgaaat ggagtatggc cactgcaaca ccaaatgtca
      901 aactccaata ggggcgataa actctagcat gccattccac aatatacacc ctctcaccat
      961 cggggaatgc cccaaatacg tgaagtcaaa caaattagtc cttgcgactg ggctcagaaa
     1021 tagtcctcta agagaaagaa gaagaaaaag aggactattt ggagctatag cagggtttat
     1081 agagggagga tggcagggaa tggtagacgg ttggtatggg tatcatcata gcaatgagca
     1141 ggggagtggg tacgctgcag acaaagaatc aacccaaaag gcaatagatg gagttaccaa
     1201 taaggtcaac tcaatcattg acaaaatgaa cactcaattt gaggccgttg gaagggaatt
     1261 taataactta gaaaggagaa tagagaattt aaacaagaaa atggaagacg gattcctaga
     1321 tgtctggact tataatgctg aacttttagt tctcatggaa aatgagagaa ctctagattt
     1381 ccatgactca aatgtcaaga acctttacga caaagtccga ctacagctta gggataatgc
     1441 aaaggagctg ggtaatggtt gtttcgagtt ctatcacaaa tgtgataacg aatgtatgga
     1501 gagcgtaaga aatgggacgt atgactaccc taagtattca gaagaagcaa tattaaaaag
     1561 agaagaaata agcggagtga aattagaatc aataggaact taccagatac tgtcaattta
     1621 ttcaacagtg gcgagttccc tagcactggc aatcatagtg gctggtctat ctttatggat
     1681 gtgctctaat gggtcgttac aatgcagaat ttgcatctaa atttgtgagc tcagattgta
     1741 atta

niman · December 24, 2015

LOCUS       KU201792                1744 bp    cRNA    linear   VRL 22-DEC-2015
DEFINITION  Influenza A virus (A/chicken/California/15-004912/2015(H5N8))
            segment 4 hemagglutinin (HA) gene, complete cds.
ACCESSION   KU201792
VERSION     KU201792.1  GI:965568768
KEYWORDS    .
SOURCE      Influenza A virus (A/chicken/California/15-004912/2015(H5N8))
  ORGANISM  Influenza A virus (A/chicken/California/15-004912/2015(H5N8))
            Viruses; ssRNA viruses; ssRNA negative-strand viruses;
            Orthomyxoviridae; Influenzavirus A.
REFERENCE   1  (bases 1 to 1744)
  AUTHORS   Killian,M.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2015) Diagnostic Virology Laboratory, National
            Veterinary Services Laboratories (NVSL), USDA APHIS VS, 1920 Dayton
            Avenue, Ames, IA 50010, USA
COMMENT     GenBank Accession Numbers KU201789-KU201796 represent sequences
            from the 8 segments of Influenza A virus
            (A/chicken/California/15-004912/2015(H5N8)).
            
            ##Assembly-Data-START##
            Assembly Method       :: SeqMan NGen v. v4
            Sequencing Technology :: IonTorrent
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1744
                     /organism="Influenza A virus
                     (A/chicken/California/15-004912/2015(H5N8))"
                     /mol_type="viral cRNA"
                     /strain="A/chicken/California/15-004912/2015"
                     /serotype="H5N8"
                     /isolation_source="swab; pooled sample"
                     /host="chicken; commercial layer"
                     /db_xref="taxon:1763712"
                     /segment="4"
                     /country="USA: Kings County, California"
                     /collection_date="06-Feb-2015"
                     /note="NVSL 15-004912; EP1; Eurasian origin EA-H5N8 clade
                     2.3.4.4"
     gene            17..1720
                     /gene="HA"
     CDS             17..1720
                     /gene="HA"
                     /function="receptor binding and fusion protein"
                     /codon_start=1
                     /product="hemagglutinin"
                     /protein_id="ALT19274.1"
                     /db_xref="GI:965568769"
                     /translation="MEKIVLLLAVISLVKSDQICIGYHANNSTKQVDTIMEKNVTVTH
                     AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA
                     NDLCYPGTLNDYEELKHLLSRINHFEKTLIIPRSSWPNHETSLGVSAACPYQGASSFF
                     RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAAEQTNLYKNPDTYVSVGT
                     STLNQRLVPKIATRSQVNGQSGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG
                     DSTIMKSEMEYGHCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR
                     NSPLRERRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG
                     VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE
                     RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPKYS
                     EEAILKREEISGVKLESIGTYQILSIYSTVASSLALAIIVAGLSLWMCSNGSLQCRIC
                     I"
     sig_peptide     17..64
                     /gene="HA"
     mat_peptide     65..1051
                     /gene="HA"
                     /product="HA1"
     mat_peptide     1052..1717
                     /gene="HA"
                     /product="HA2"
ORIGIN      
        1 ggttcaatct gtcaaaatgg agaaaatagt gcttcttctt gcagtgatta gccttgttaa
       61 aagtgatcag atttgcattg gttaccatgc aaacaactca acaaagcagg ttgacacgat
      121 aatggagaaa aacgtcactg ttacacatgc ccaagacata ctggaaaaga cacacaacgg
      181 gaagctctgc gatcttaatg gagtgaagcc cctgattcta aaggattgta gcgtagctgg
      241 gtggctcctt ggaaatccaa tgtgcgacga gttcatcagg gtaccggaat ggtcttacat
      301 cgtggagagg gctaatccag ccaacgacct atgttaccca gggaccctca atgactatga
      361 ggaactgaaa cacctattga gcagaataaa tcattttgag aaaactctga tcatccccag
      421 gagttcttgg cccaatcatg aaacatcatt aggggtgagc gcagcatgtc cataccaggg
      481 agcatcttca tttttcagaa atgtggtatg gctcatcaaa aagaacgatg catacccgac
      541 aataaagata agctacaata acaccaatcg ggaagatctt ttgatactgt gggggattca
      601 tcattccaac aatgcagcag agcagacaaa tctctataaa aacccagaca cttatgtttc
      661 cgttgggaca tcaacattaa accagagatt ggtgccaaaa atagctacta gatcccaagt
      721 aaacgggcag agtggaagaa tggatttctt ctggacaatt ttaaaaccga atgatgcaat
      781 ccactttgag agtaatggaa atttcattgc tccagaatat gcatacaaaa ttgtcaagaa
      841 aggggactca acaattatga aaagtgaaat ggagtatggc cactgcaaca ccaaatgtca
      901 aactccaata ggggcgataa actctagcat gccattccac aatatacacc ctctcaccat
      961 cggggaatgc cccaaatacg tgaagtcaaa caaattagtc cttgcgactg ggctcagaaa
     1021 tagtcctcta agagaaagaa gaagaaaaag aggactattt ggagctatag cagggtttat
     1081 agagggagga tggcagggaa tggtagacgg ttggtatggg tatcatcata gcaatgagca
     1141 ggggagtggg tacgctgcag acaaagaatc cacccaaaag gcaatagatg gagttaccaa
     1201 taaggtcaac tcaatcattg acaaaatgaa cactcaattt gaggccgttg gaagggaatt
     1261 taataactta gaaaggagaa tagagaattt aaacaagaaa atggaagacg gattcctaga
     1321 tgtctggact tataatgctg aacttttagt tctcatggaa aatgagagaa ctctagattt
     1381 tcatgactca aatgtcaaga acctttacga caaagtccga ctacagctta gggataatgc
     1441 aaaggagctg ggcaatggtt gtttcgagtt ctatcacaaa tgtgataacg aatgtatgga
     1501 gagcgtaaga aatgggacgt atgactaccc taagtattca gaagaagcaa tattaaaaag
     1561 agaagaaata agcggagtga aattagaatc aataggaact taccagatac tgtcaattta
     1621 ttcaacagtg gcgagttccc tagcactggc aatcatagtg gctggtctat ctttatggat
     1681 gtgctctaat gggtcgttac aatgcagaat ttgcatctaa atttgtgagc tcagattgta
     1741 atta

niman · December 24, 2015

LOCUS       KU201800                1744 bp    cRNA    linear   VRL 22-DEC-2015
DEFINITION  Influenza A virus (A/bald eagle/Idaho/15-002892-2/2015(H5N8))
            segment 4 hemagglutinin (HA) gene, complete cds.
ACCESSION   KU201800
VERSION     KU201800.1  GI:965568710
KEYWORDS    .
SOURCE      Influenza A virus (A/bald eagle/Idaho/15-002892-2/2015(H5N8))
  ORGANISM  Influenza A virus (A/bald eagle/Idaho/15-002892-2/2015(H5N8))
            Viruses; ssRNA viruses; ssRNA negative-strand viruses;
            Orthomyxoviridae; Influenzavirus A.
REFERENCE   1  (bases 1 to 1744)
  AUTHORS   Killian,M.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2015) Diagnostic Virology Laboratory, National
            Veterinary Services Laboratories (NVSL), USDA APHIS VS, 1920 Dayton
            Avenue, Ames, IA 50010, USA
COMMENT     GenBank Accession Numbers KU201797-KU201804 represent sequences
            from the 8 segments of Influenza A virus (A/bald
            eagle/Idaho/15-002892-2/2015(H5N8)).
            
            ##Assembly-Data-START##
            Assembly Method       :: SeqMan NGen v. v4
            Sequencing Technology :: Illumina; IonTorrent
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1744
                     /organism="Influenza A virus (A/bald
                     eagle/Idaho/15-002892-2/2015(H5N8))"
                     /mol_type="viral cRNA"
                     /strain="A/bald eagle/Idaho/15-002892-2/2015"
                     /serotype="H5N8"
                     /isolation_source="tracheal swab"
                     /host="bald eagle; mortality investigation"
                     /db_xref="taxon:1763711"
                     /segment="4"
                     /country="USA: Canyon County, Idaho"
                     /collection_date="20-Jan-2015"
                     /collected_by="Idaho Fish and Game"
                     /note="NVSL 15-002892-2; EP1; Eurasian origin EA-H5N8
                     clade 2.3.4.4"
     gene            17..1720
                     /gene="HA"
     CDS             17..1720
                     /gene="HA"
                     /function="receptor binding and fusion protein"
                     /codon_start=1
                     /product="hemagglutinin"
                     /protein_id="ALT19262.1"
                     /db_xref="GI:965568711"
                     /translation="MEKIVLLLAVISLVKSDQICIGYHANNSTKQVDTIMEKNVTVTH
                     AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA
                     NDLCYPGTLNDYEELKHLLSRINHFEKTLIIPRSSWPNHETSLGVSAACPYQGASSFF
                     RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAAEQTNLYKNPDTYVSVGT
                     STLNQRLVPKIATRSQVNGQSGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG
                     DSTIMKSEMEYGHCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR
                     NSPLRERRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG
                     VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE
                     RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPKYS
                     EEAILKREEISGVKLESIGTYQILSIYSTVASSLALAIIVAGLSLWMCSNGSLQCRIC
                     I"
     sig_peptide     17..64
                     /gene="HA"
     mat_peptide     65..1051
                     /gene="HA"
                     /product="HA1"
     mat_peptide     1052..1717
                     /gene="HA"
                     /product="HA2"
ORIGIN      
        1 ggttcaatct gtcaaaatgg agaaaatagt gcttcttctt gcagtgatta gccttgttaa
       61 aagtgatcag atttgcattg gttaccatgc aaacaactca acaaagcagg ttgacacgat
      121 aatggagaaa aacgtcactg ttacacatgc ccaagacata ctggaaaaga cacacaacgg
      181 gaagctctgc gatcttaatg gagtgaagcc cctgattcta aaggattgta gcgtagctgg
      241 gtggctcctt ggaaatccaa tgtgcgacga gttcatcagg gtaccggaat ggtcttacat
      301 cgtggagagg gctaatccag ccaacgacct atgttaccca gggaccctca atgactatga
      361 ggaactgaaa cacctattga gcagaataaa tcattttgag aaaactctga tcatccccag
      421 gagttcttgg cccaatcatg aaacatcatt aggggtgagc gcagcatgtc cataccaggg
      481 agcatcctca tttttcagaa atgtggtatg gctcatcaaa aagaacgatg catacccgac
      541 aataaagata agctacaata ataccaatcg ggaagatctt ttgatactgt gggggattca
      601 tcattccaac aatgcagcag agcagacaaa tctctataaa aacccagaca cttatgtttc
      661 cgttgggaca tcaacattaa accagagatt ggtgccaaaa atagctacta gatcccaagt
      721 aaacgggcag agtggaagaa tggatttctt ctggacaatt ttaaaaccga atgatgcaat
      781 ccactttgag agtaatggaa atttcattgc tccagaatat gcatacaaaa ttgtcaagaa
      841 aggggactca acaattatga aaagtgaaat ggagtatggc cactgcaaca ccaaatgtca
      901 aactccaata ggggcgataa actctagcat gccattccac aatatacacc ctctcaccat
      961 cggggaatgc cccaaatacg tgaagtcaaa caaattagtc cttgcgactg ggctcagaaa
     1021 tagtcctcta agagaaagaa gaagaaaaag aggactattt ggagctatag cagggtttat
     1081 agagggagga tggcagggaa tggtagacgg ttggtatggg tatcatcata gcaatgagca
     1141 ggggagtggg tacgctgcag acaaagaatc cacccaaaag gcaatagatg gagttaccaa
     1201 taaggtcaac tcaatcattg acaaaatgaa cactcaattt gaggccgttg gaagggaatt
     1261 taataactta gaaaggagaa tagagaattt aaacaagaaa atggaagacg gattcctaga
     1321 tgtctggact tataatgctg aacttttagt tctcatggaa aatgagagaa ctctagattt
     1381 tcatgactca aatgtcaaga acctttacga caaagtccga ctacagctta gggataatgc
     1441 aaaggagctg ggcaatggtt gtttcgagtt ctatcacaaa tgtgataacg aatgtatgga
     1501 gagcgtaaga aatgggacgt atgactaccc taagtattca gaagaagcaa tattaaaaag
     1561 agaagaaata agcggagtga aattagaatc aataggaact taccagatac tgtcaattta
     1621 ttcaacagtg gcgagttccc tagcactggc aatcatagtg gctggtctat ctttatggat
     1681 gtgctctaat gggtcgttac aatgcagaat ttgcatctaa atttgtgagc tcagattgta
     1741 atta

niman · December 24, 2015

LOCUS       KU201808                1744 bp    cRNA    linear   VRL 22-DEC-2015
DEFINITION  Influenza A virus (A/Northern pintail/Washington/195365/2014(H5N2))
            segment 4 hemagglutinin (HA) gene, complete cds.
ACCESSION   KU201808
VERSION     KU201808.1  GI:965568641
KEYWORDS    .
SOURCE      Influenza A virus (A/Northern pintail/Washington/195365/2014(H5N2))
  ORGANISM  Influenza A virus (A/Northern pintail/Washington/195365/2014(H5N2))
            Viruses; ssRNA viruses; ssRNA negative-strand viruses;
            Orthomyxoviridae; Influenzavirus A.
REFERENCE   1  (bases 1 to 1744)
  AUTHORS   Killian,M.L., Ip,H.S., Griffin,K., Messer,J., McMullen,K., Dusek,R.
            and Bodenstein,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2015) Diagnostic Virology Laboratory, National
            Veterinary Services Laboratories (NVSL), USDA APHIS VS, 1920 Dayton
            Avenue, Ames, IA 50010, USA
COMMENT     GenBank Accession Numbers KU201805-KU201812 represent sequences
            from the 8 segments of Influenza A virus (A/Northern
            pintail/Washington/195365/2014(H5N2)).
            
            ##Assembly-Data-START##
            Assembly Method       :: SeqMan NGen v. v4
            Sequencing Technology :: Illumina; IonTorrent
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1744
                     /organism="Influenza A virus (A/Northern
                     pintail/Washington/195365/2014(H5N2))"
                     /mol_type="viral cRNA"
                     /strain="A/Northern pintail/Washington/195365/2014"
                     /serotype="H5N2"
                     /isolation_source="oropharyngeal/cloacal swab pool from
                     individual bird"
                     /host="northern pintail; hunter harvest"
                     /db_xref="taxon:1763706"
                     /segment="4"
                     /country="USA: Clark County, Washington"
                     /collection_date="23-Dec-2014"
                     /note="NVSL 15-000377-1; EP1; Eurasian origin (EA-H5N8
                     clade 2.3.4.4)-North American reassortant"
     gene            17..1720
                     /gene="HA"
     CDS             17..1720
                     /gene="HA"
                     /function="receptor binding and fusion protein"
                     /codon_start=1
                     /product="hemagglutinin"
                     /protein_id="ALT19250.1"
                     /db_xref="GI:965568642"
                     /translation="MEKIVLLLAVISLVKSDQICIGYHANNSTKQVDTIMEKNVTVTH
                     AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA
                     NDLCYPGTLNDYEELKHLLSRINHFEKTLIIPRSSLPNHETSLGVSAACPYQGASSFF
                     RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAAEQTNLYKNPDTYVSVGT
                     STLNQRLVPKIATRSQVNGQSGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG
                     DSTIMKSEMEYGHCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR
                     NSPLRERRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG
                     VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE
                     RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPKYS
                     EEAILKREEISGVKLESIGTYQILSIYSTVASSLALAIIVAGLSLWMCSNGSLQCRIC
                     I"
     sig_peptide     17..64
                     /gene="HA"
     mat_peptide     65..1051
                     /gene="HA"
                     /product="HA1"
     mat_peptide     1052..1717
                     /gene="HA"
                     /product="HA2"
ORIGIN      
        1 ggttcaatct gtcaaaatgg agaaaatagt gcttcttctt gcagtgatta gccttgttaa
       61 aagtgatcag atttgcattg gttaccatgc aaacaactca acaaagcagg ttgacacgat
      121 aatggagaaa aacgtcactg ttacacatgc ccaagacata ctggaaaaga cacacaacgg
      181 gaagctctgc gatcttaatg gagtgaagcc cctgattcta aaggattgta gcgtagctgg
      241 gtggctcctt ggaaatccaa tgtgcgacga gttcatcagg gtaccggaat ggtcttacat
      301 cgtggagagg gctaacccag ccaacgacct ctgttaccca gggaccctca atgactatga
      361 ggaactgaaa cacctattga gcagaataaa tcattttgag aaaactctga tcatccccag
      421 gagttctttg cccaatcatg aaacatcatt aggggtgagc gcagcatgtc cataccaggg
      481 agcatcctca tttttcagaa atgtggtatg gctcatcaaa aagaacgatg catacccgac
      541 aataaagata agctacaata ataccaatcg agaagatctt ttgatactgt gggggattca
      601 tcattccaac aatgcagcag agcagacaaa tctctataaa aacccagaca cttatgtttc
      661 cgttgggaca tcaacattaa accagagatt ggtgccaaaa atagctacta gatcccaagt
      721 aaacgggcag agtggaagaa tggatttctt ctggacaatt ttaaaaccga atgatgcaat
      781 ccactttgag agtaatggaa atttcattgc tccagaatat gcatacaaaa ttgtcaagaa
      841 aggggactca acaattatga aaagtgaaat ggagtatggc cactgcaaca ccaaatgtca
      901 aactccaata ggggcgataa actctagcat gccattccac aatatacacc ctctcaccat
      961 cggggaatgc cccaaatacg tgaagtcaaa caaattagtc cttgcgactg ggctcagaaa
     1021 tagtcctcta agagaaagaa gaagaaaaag aggactattt ggagctatag cagggtttat
     1081 agagggagga tggcagggaa tggtagacgg ttggtatggg tatcatcata gcaatgagca
     1141 ggggagtggg tacgctgcag acaaagaatc aacccaaaag gcaatagatg gagttaccaa
     1201 taaggtcaac tcaatcattg acaaaatgaa cactcaattt gaggccgttg gaagggaatt
     1261 taataactta gaaaggagaa tagagaattt aaacaagaaa atggaagacg gattcctaga
     1321 tgtctggact tataatgctg aacttttagt tctcatggaa aatgagagaa ctctagattt
     1381 ccatgactca aatgtcaaga acctttacga caaagtccga ctacagctta gggataatgc
     1441 aaaggagctg ggtaatggtt gtttcgagtt ctatcacaaa tgtgataacg aatgtatgga
     1501 gagcgtaaga aatgggacgt atgactaccc taagtattca gaagaagcaa tattaaaaag
     1561 agaagaaata agcggagtga aattagaatc aataggaact taccagatac tgtcaattta
     1621 ttcaacagtg gcgagttccc tagcactggc aatcatagtg gctggtctat ctttatggat
     1681 gtgctctaat gggtcgttac aatgcagaat ttgcatctaa atttgtgagc tcagattgta
     1741 atta

niman · December 24, 2015

LOCUS       KU201816                1744 bp    cRNA    linear   VRL 22-DEC-2015
DEFINITION  Influenza A virus (A/mallard/Oregon/195547/2014(H5N2)) segment 4
            hemagglutinin (HA) gene, complete cds.
ACCESSION   KU201816
VERSION     KU201816.1  GI:965568602
KEYWORDS    .
SOURCE      Influenza A virus (A/mallard/Oregon/195547/2014(H5N2))
  ORGANISM  Influenza A virus (A/mallard/Oregon/195547/2014(H5N2))
            Viruses; ssRNA viruses; ssRNA negative-strand viruses;
            Orthomyxoviridae; Influenzavirus A.
REFERENCE   1  (bases 1 to 1744)
  AUTHORS   Killian,M.L., Ip,H.S., Griffin,K., Messer,J., McMullen,K., Dusek,R.
            and Bodenstein,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2015) Diagnostic Virology Laboratory, National
            Veterinary Services Laboratories (NVSL), USDA APHIS VS, 1920 Dayton
            Avenue, Ames, IA 50010, USA
COMMENT     GenBank Accession Numbers KU201813-KU201820 represent sequences
            from the 8 segments of Influenza A virus
            (A/mallard/Oregon/195547/2014(H5N2)).
            
            ##Assembly-Data-START##
            Assembly Method       :: SeqMan NGen v. v4
            Sequencing Technology :: Illumina; IonTorrent
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1744
                     /organism="Influenza A virus
                     (A/mallard/Oregon/195547/2014(H5N2))"
                     /mol_type="viral cRNA"
                     /strain="A/mallard/Oregon/195547/2014"
                     /serotype="H5N2"
                     /isolation_source="oropharyngeal/cloacal swab pool from
                     individual bird"
                     /host="mallard; hunter harvest"
                     /db_xref="taxon:1763720"
                     /segment="4"
                     /country="USA: Columbia County, Oregon"
                     /collection_date="22-Dec-2014"
                     /note="NVSL 15-000377-4; EP1; Eurasian origin (EA-H5N8
                     clade 2.3.4.4)-North American reassortant"
     gene            17..1720
                     /gene="HA"
     CDS             17..1720
                     /gene="HA"
                     /function="receptor binding and fusion protein"
                     /codon_start=1
                     /product="hemagglutinin"
                     /protein_id="ALT19238.1"
                     /db_xref="GI:965568603"
                     /translation="MEKIVLLFAVISLVKSDQICIGYHANNSTKQVDTIMEKNVTVTH
                     AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA
                     NDLCYPGTLNDYEELKHLLSRINHFEKTLIIPRSSWPNHETSLGVSAACPYQGASSFF
                     RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAAEQTNLYKNPDTYVSVGT
                     STLNQRLVPKIATRSQVNGQSGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG
                     DSTIMKSEMEYGHCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR
                     NSPLRERRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG
                     VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE
                     RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPKYS
                     EEAILKREEISGVKLESIGTYQILSIYSTVASSLALAIIVAGLSLWMCSNGSLQCRIC
                     I"
     sig_peptide     17..64
                     /gene="HA"
     mat_peptide     65..1051
                     /gene="HA"
                     /product="HA1"
     mat_peptide     1052..1717
                     /gene="HA"
                     /product="HA2"
ORIGIN      
        1 ggttcaatct gtcaaaatgg agaaaatagt gcttcttttt gcagtgatta gccttgttaa
       61 aagtgatcag atttgcattg gttaccatgc aaacaactca acaaagcagg ttgacacgat
      121 aatggagaaa aacgtcactg ttacacatgc ccaagacata ctggaaaaga cacacaacgg
      181 gaagctctgc gatcttaatg gagtgaagcc cctgattcta aaggattgta gcgtagctgg
      241 gtggctcctt ggaaatccaa tgtgcgacga gttcatcagg gtaccggaat ggtcttacat
      301 cgtggagagg gctaacccag ccaacgacct ctgttaccca gggaccctca atgactatga
      361 ggaactgaaa cacctattga gcagaataaa tcattttgag aaaactctga tcatccccag
      421 gagttcttgg cccaatcatg aaacatcatt aggggtgagc gcagcatgtc cataccaggg
      481 agcatcctca tttttcagaa atgtggtatg gctcatcaaa aagaacgatg catacccgac
      541 aataaagata agctacaata ataccaatcg ggaagatctt ttgatactgt gggggattca
      601 tcattccaac aatgcagcag agcagacaaa tctctataaa aacccagaca cttatgtttc
      661 cgttgggaca tcaacattaa accagaggtt ggtgccaaaa atagctacta gatcccaagt
      721 aaacgggcag agtggaagaa tggatttctt ctggacaatt ttaaaaccga atgatgcaat
      781 ccactttgag agtaatggaa atttcattgc tccagaatat gcatacaaaa ttgtcaagaa
      841 aggggactca acaattatga aaagtgaaat ggagtatggc cactgcaaca ccaaatgtca
      901 aactccaata ggggcgataa actctagcat gccattccac aatatacacc ctctcaccat
      961 cggggaatgc cccaaatacg tgaagtcaaa caaattagtc cttgcgactg ggctcagaaa
     1021 tagtcctcta agagaaagaa gaagaaaaag aggactattt ggagctatag cagggtttat
     1081 agagggagga tggcagggaa tggtagacgg ttggtatggg tatcatcata gcaatgagca
     1141 ggggagtggg tacgctgcag acaaagaatc aacccaaaag gcaatagatg gagttaccaa
     1201 taaggtcaac tcaatcattg acaaaatgaa cactcaattt gaggccgttg gaagggaatt
     1261 taataactta gaaaggagaa tagagaattt aaacaagaaa atggaagacg gattcctaga
     1321 tgtctggact tataatgctg aacttttagt tctcatggaa aatgagagaa ctctagattt
     1381 ccatgactca aatgtcaaga acctttacga caaagtccga ctacagctta gggataatgc
     1441 aaaggagctg ggtaatggtt gtttcgagtt ctatcacaaa tgtgataacg aatgtatgga
     1501 gagcgtaaga aatgggacgt atgactaccc taagtattca gaagaagcaa tattaaaaag
     1561 agaagaaata agcggagtga aattagaatc aataggaact taccagatac tgtcaattta
     1621 ttcaacagtg gcgagttccc tagcactggc aatcatagtg gctggtctat ctttatggat
     1681 gtgctctaat gggtcgttac aatgcagaat ttgcatctaa atttgtgagc tcagattgta
     1741 atta

APHIS Releases Fujian H5N1 H5N2 H5N8 Wild Bird Sequences

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