niman Posted September 22, 2016 Report Posted September 22, 2016 (edited) CDC has released 3 full D68 enterovirus sequences from US acute flaccid myelitis cases. Edited September 22, 2016 by niman
niman Posted September 22, 2016 Author Report Posted September 22, 2016 32. Enterovirus D68 strain USA/FL/2016-19504, complete genome 7,333 bp linear RNA Accession: KX675261.1 GI: 1050796057 GenBankFASTAGraphics Select item 105079605933. Enterovirus D68 strain USA/NY/2016-19505, complete genome 7,319 bp linear RNA Accession: KX675262.1 GI: 1050796059 GenBankFASTAGraphics Select item 105079606134. Enterovirus D68 strain USA/TX/2016-19506, complete genome 7,310 bp linear RNA Accession: KX675263.1 GI: 1050796061 GenBankFASTAGraphics
niman Posted September 22, 2016 Author Report Posted September 22, 2016 LOCUS KX675261 7333 bp RNA linear VRL 16-AUG-2016 DEFINITION Enterovirus D68 strain USA/FL/2016-19504, complete genome. ACCESSION KX675261 VERSION KX675261.1 GI:1050796057 DBLINK BioProject: PRJNA322324 KEYWORDS . SOURCE Enterovirus D68 (EV-D68) ORGANISM Enterovirus D68 Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Picornaviridae; Enterovirus; Enterovirus D. REFERENCE 1 (bases 1 to 7333) AUTHORS Ng,T.F.F., Montmayeur,A., Castro,C.J., Rogers,S.L., Chern,S.-W., Maher,K., Magana,L., Marine,R., Lamson,D., St. George,K., Oberste,M.S. and Nix,W.A. TITLE Detection and Genomic Characterization of Enterovirus D68 in Respiratory Samples from Three Acute Flaccid Myelitis Cases in 2016 JOURNAL Unpublished REFERENCE 2 (bases 1 to 7333) AUTHORS Ng,T.F.F., Montmayeur,A., Castro,C.J., Rogers,S.L., Chern,S.-W., Maher,K., Magana,L., Marine,R., Lamson,D., St. George,K., Oberste,M.S. and Nix,W.A. TITLE Direct Submission JOURNAL Submitted (09-AUG-2016) Polio and Picornavirus Laboratory Branch, Centers for Disease Control and Prevention, 1600 Clifton Rd. NE, Atlanta, GA 30329, USA COMMENT ##Assembly-Data-START## Assembly Method :: Geneious v. R9 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7333 /organism="Enterovirus D68" /mol_type="genomic RNA" /strain="USA/FL/2016-19504" /isolation_source="nasal swab" /host="Homo sapiens" /db_xref="taxon:42789" /country="USA: FL" /collection_date="31-Mar-2016" CDS 700..7266 /codon_start=1 /product="polyprotein" /protein_id="ANZ79242.1" /db_xref="GI:1050796058" /translation="MGAQVTRQQTGTHENANVATNGSHITYNQINFYKDSYAASASKQ DFSQDPSKFTEPVVEGLKAGAPVLKSPSAEACGYSDRVLQLKLGNSAIVTQEAANYCC AYGEWPNYLPDHEAVAIDKPTQPETATDRFYTLRSVKWEATSTGWWWKLPDALNNIGM FGQNVQHHYLYRSGFLIHVQCNATKFHQGALLVVAIPEHQRGAHNTTTSPGFDDIMKG EAGGTFNHPYVLDDGTSLACATIFPHQWINLRTNNSATIVLPWMNAAPMDFPLRHNQW TLAIIPVVPLGTRTMSSMVPITVSIAPMCCEFNGLRHAITQGVPTYLLPGSGQFLTTD DHSSAPVLPCFNPTPEMHIPGQVRNMLEVVQVESMMEINNTESAVGMERLKVDISALT DVDQLLFNIPLDIQLDGPLRNTLVGNISRYYTHWSGSLEMTFMFCGSFMATGKLILCY TPPGGSCPTTRETAMLGTHIVWDFGLQSSITLIIPWISGSHYRMFNNDAKSTNANVGY VTCFMQTNLIVPSESSDTCSLIGFIAAKDDFSLRLMRDSPDIGQLDHLHGAEAAYQIE GIIKTATDTVKSEINAELGVVPSLNAVETGATSNTEPEEAIQTRTVINQHGVSETLVE NFLSRAALVSKRSFEYKDHTSSAAQADKNFFKWTINTRSFVQLRRKLELFTYLRFDAE ITILTTVAVNGSSNNTYVGLPDLTLQAMFVPTGALTPEKQDSFHWQSGSNASVFFKIS DPPARMTIPFMCINSAYSVFYDGFAGFEKTGLYGINPADTIGNLCVRIVNEHQPVGFT VTVRVYMKPKHIKAWAPRPPRTLPYMSIANANYKGKERAPNALNAIIGNRDSVKTMPH NIVTTGPGFGGVFVGSFKIINYHLATTEERQSAIYVDWQSDILVTPIAAHGRHQIARC KCNTGVYYCRHKDRSYPICFEGPGIQWIEQNEYYPARYQTNVLLAVGPAEAGDCGGLL VCPHGVIGLLTAGGGGIVAFTDIRNLLWLDTDAMEQGITDYIQNLGNAFGAGFTETIS NKAKEVQDMLIGESSLLEKLLKALIKIISALVIVIRNSEDLVTVTATLALLGCHDSPW SYLKQKVCSYLGIPYVPRQSESWLKKFTEACNALRGLDWLSQKIDKFINWLKTKILPE AREKYEFVQRLKQLPVIENQVSTIEHSCPTTEQQQALFNNVQYYSHYCRKYAPLYAVE AKRVMALEKKINNYIQFKSKSRIEPVCLIIHGSPGTGKSVASNLIARAITEKLGGDIY SLPPDPKYFDGYKQQTVVLMDDLMQNPDGNDISMFCQMVSTVDFIPPMASLEEKGTLY TSPFLIATTNAGSIHAPTVSDSKALSRRFKFDVDIEVTDSYKDSNKLDMSRAVEMCKP DGCAPANYKRCCPLICGKAIQFRDRRTNARSTIDMLVTDIIKEYRTRNSTQDKLEALF QGPPQFKEIKISVTPDTPAPDAINDLLRSVDSQEVRDYCQKKGWIVIHPSNELLVEKH ISRAFITLQAIATFVSIAGVVYVIYKLFAGIQGPYTGIPNPKPKVPSLRTAKVQGPGF DFAQAIMKKNTVIARTEKGEFTMLGVYDRVAVIPTHASVGETIYIDDVETRVLDACAL RDLTDTNLEITIVKLDRNQKFRDIRHFLPRYEDDYNDAVLSVHTSKFPNMYIPVGQVT NYGFLNLGGTPTHRILMYNFPTRAGQCGGVVTTTGKVIGIHVGGNGAQGFAAMLLHSY FTDTQGEIVSSEKSGVCINAPAKTKLQPSVFHQVFEGSKEPAVLNPKDPRLKTDFEEA IFSKYTGNKIMLMDEYMEEAVDHYVGCLEPLDISVDPIPLESAMYGMDGLEALDLTTS AGFPYLLQGKKKRDIFNRHTRDTSEMTKMLEKYGVDLPFVTFVKDELRSREKVEKGKS RLIEASSLNDSVAMRVAFGNLYATFHNNPGTATGSAVGCDPDIFWSKIPILLDGEIFA FDYTGYDASLSPVWFACLKKVLIKLGYTHQTSFIDYLCHSVHLYKDRKYIVNGGMPSG SSGTSIFNTMINNIIIRTLLIRVYKGIDLDQFKMIAYGDDVIASYPHKIDPGLLAEAG KHYGLVMTPADKGTSFVDTNWENVTFLKRYFRADDQYPFLIHPVMPMKEIHESIRWTK DPRNTQDHVRSLCYLAWHNGEEAYNEFCRKIRSVPVGRALTLPAYSSLRRKWLDSF" mat_peptide 700..906 /product="VP4" mat_peptide 907..1650 /product="VP2" mat_peptide 1651..2355 /product="VP3" mat_peptide 2356..3282 /product="VP1" mat_peptide 3283..3723 /product="p2A" mat_peptide 3724..4020 /product="p2B" mat_peptide 4021..5010 /product="p2C" mat_peptide 5011..5277 /product="p3A" mat_peptide 5278..5343 /product="p3B" mat_peptide 5344..5892 /product="p3C" mat_peptide 5893..7263 /product="p3D" ORIGIN 1 ttaaaacagc tttggggttg ttcccactcc aagggcccac gtggcggcta gtactctggt 61 acttcggtac ctttgtacgc ctgttttatc tcccttccca atgtaattta gaagctctta 121 aatcaaggct caataggtgg ggcgcaaacc agcgctctca tgagcaagca ctcctgtctc 181 cccggtgtgg ttgtataaac tgttcccacg gttgaaaaca acctatccgt tatccgctat 241 agtacttcga gaaacctagt atcacctttg gattgttgac gcgttgcgct cagcacacta 301 acccgtgtgt agcttgggtc gatgagtctg gacatacccc actggcgaca gtggtccagg 361 ctgcgttggc ggcctactca tggtgaaaac catgagacgc tagacatgaa caaggtgtga 421 agagtctatt gagctactat agagtcctcc ggcccctgaa tgcggctaat cctaaccatg 481 gagcaagtgc tcacaggcca gtgagttgct tgtcgtaatg cgcaagtccg tggcggaacc 541 gactactttg ggtgtccgtg tttcactttt tacttttatg actgcttatg gtgacaattt 601 gatattgtta ccatttagct tgtcaaatta attgcaaaag atcctaaatc ttacttacca 661 acttgcattt tgacaacctt gatttgaaaa tttttaataa tgggagctca ggtcactaga 721 caacaaactg gcactcacga aaatgccaat gttgccacaa atggatctca tatcacatac 781 aatcagataa acttttataa ggatagttat gcagcttcag ccagcaagca ggatttttca 841 caggacccat cgaaattcac tgaaccagta gtggaaggtt tgaaagcagg agcgccagtt 901 ttgaaatctc ctagtgctga ggcgtgtggc tacagtgata gagtgctaca gcttaaatta 961 ggtaattcag ctatcgtcac ccaggaagca gcaaactact gctgtgctta tggtgaatgg 1021 cccaattact taccagacca tgaagcagta gccattgaca aacccacaca accagaaact 1081 gctacagata gattctacac tttgaggtca gtcaaatggg aggctacaag cacaggatgg 1141 tggtggaaac tacccgatgc actaaataat ataggcatgt ttgggcagaa tgtacagcat 1201 cactacctat atagatctgg tttcttgatt catgtgcagt gtaatgccac aaaattccat 1261 cagggtgcct tattagtggt agcaattcca gaacatcaga ggggagcgca caacactacc 1321 actagtccag ggtttgatga catcatgaaa ggtgaagcag gagggacctt caatcatcca 1381 tatgtccttg atgatggaac gtcattggct tgtgcgacga tatttccaca tcagtggata 1441 aatctgagaa ctaacaattc agcaacaatt gttcttccct ggatgaatgc tgctccaatg 1501 gacttcccac ttagacataa tcagtggaca ctagcaataa taccagtggt gccattaggc 1561 acgcgtacaa tgtcaagcat ggtcccaata acagtttcaa ttgctccaat gtgttgtgag 1621 tttaatggac tcagacacgc cattactcaa ggtgtcccaa catacctttt accaggctcg 1681 ggacaattcc taacaactga tgatcatagc tctgcaccgg ttctcccgtg tttcaaccca 1741 actccagaga tgcacattcc agggcaggtc cgtaatatgc tagaagtggt ccaagtggaa 1801 tcaatgatgg agatcaacaa cacagaaagt gcggttggta tggagcgtct caaggttgac 1861 atatcagcat tgacagatgt cgatcaattg ttattcaaca ttccactgga tatacaattg 1921 gatgggccac ttagaaacac tttagtagga aacatatcta gatactatac tcattggtct 1981 ggatccctag aaatgacatt tatgttttgt ggcagcttta tggcgacagg aaaattaatc 2041 ctgtgctata ctcctccagg tgggtcatgc ccgacaacca gagagaccgc catgttaggt 2101 acacatattg tttgggattt tggactacaa tctagtataa ccctgataat accttggatt 2161 agtggatccc actacaggat gttcaataat gatgctaagt caactaatgc taacgttggc 2221 tatgtcactt gtttcatgca gaccaatctg atagtcccca gtgaatcctc tgacacatgt 2281 tccttgatag ggttcatagc agcaaaagat gatttctccc tcaggttaat gagagacagc 2341 cctgacattg gacaattaga ccacttacat ggagcagagg cagcctacca gatcgagggc 2401 atcattaaaa cagcaactga taccgtgaaa agtgagatta acgctgaact tggtgtggtc 2461 cctagcttaa atgcagttga aacaggtgca acatctaaca ctgaaccaga agaagctata 2521 caaactcgca cagtgataaa tcaacacggt gtatccgaaa ctctagtgga gaattttctc 2581 agtagagcag ctttggtgtc aaagagaagt ttcgaataca aagaccatac ttcgtctgca 2641 gcacaagcag ataagaactt tttcaaatgg acaattaaca ccaggtcctt cgtacagcta 2701 agaagaaagt tagaattatt cacatacctt agattcgatg ctgagatcac tatactcaca 2761 actgtagcag tgaatggcag tagtaataat acatatgtgg gtcttcctga cttgacactg 2821 caggcaatgt ttgtacccac tggtgccctt accccagaaa agcaagactc attccactgg 2881 cagtcaggta gtaatgctag tgtattcttt aaaatctctg accccccagc cagaatgacc 2941 atacctttta tgtgtattaa ttcagcatac tcagtttttt atgatggctt tgccggattt 3001 gagaaaactg gtctgtatgg aataaatcca gctgacacta ttggtaactt gtgtgttaga 3061 atagtgaatg aacaccaacc agttggtttc acagtgactg ttagggttta catgaagcct 3121 aaacacataa aagcgtgggc accacgacca ccacgaaccc tgccatacat gagtattgca 3181 aatgcaaatt acaaaggtaa agaaagagca ccaaatgcgc tcaatgctat aattggcaat 3241 agagacagtg ttaaaaccat gcctcataat atagtgacta ctggtccagg cttcggagga 3301 gtttttgtag gatctttcaa aataattaac tatcacttag ccaccacaga ggagagacag 3361 tcagccatct acgtggattg gcaatcagac atcttggtta cccccattgc tgctcatgga 3421 agacaccaaa tagcaagatg caagtgcaac acaggggttt actattgtag acacaaagac 3481 agaagttacc caatttgctt tgaaggccca gggattcaat ggattgaaca aaatgaatat 3541 tacccagcaa ggtaccagac caatgtactt ttagcagttg gccctgcaga agcaggagat 3601 tgcggtggtt tactagtctg tccacatggg gtaatcggtc ttcttacagc aggagggggt 3661 ggaattgtag ctttcaccga tatcagaaac ttgctatggt tagatactga tgctatggaa 3721 caaggcatta ctgattacat tcaaaatctt ggcaatgcct ttggagcagg gttcacagaa 3781 acaatctcta ataaagccaa ggaagtgcaa gatatgctaa ttggagagag ttcactatta 3841 gaaaaattgc taaaagctct aatcaaaatc atatcagcat tagtaattgt aatcagaaat 3901 tcagaagact tagttacagt cacagctaca ctagcattac tggggtgcca cgattcacca 3961 tggagctact tgaaacagaa ggtatgttca tacttaggta ttccttatgt acctagacag 4021 agtgaatcgt ggcttaagaa gttcacagaa gcatgcaatg ctctcagagg tctagattgg 4081 ctatcacaaa agatagataa attcatcaac tggcttaaaa ccaaaatatt accggaagct 4141 agggagaaat atgagtttgt gcaaagacta aagcagttac cggtaataga aaaccaagtt 4201 agcacaatcg agcatagctg cccaacaaca gaacaacagc aggccttatt caataatgtc 4261 cagtactatt cacattactg tagaaagtac gcaccacttt acgcagtgga agcaaagagg 4321 gtaatggctc tcgaaaagaa aataaacaac tacatccagt tcaagtccaa atctcgcatt 4381 gaaccggttt gtttaataat acatggctct ccaggaactg gcaagtcagt ggcctcaaat 4441 ttaattgcca gggctatcac agaaaaattg ggaggggaca tttattcctt gcccccagac 4501 cctaaatatt ttgatggata caaacagcaa acggtagtcc tcatggatga tttaatgcaa 4561 aatccagatg ggaatgacat atctatgttc tgccaaatgg tctctactgt ggattttata 4621 cccccaatgg ctagcttgga ggaaaaagga actttgtaca ccagtccatt tttaatagct 4681 actactaatg ctggctcaat acatgcacca actgtgtcag actcaaaggc tttgtcacgc 4741 aggtttaaat ttgatgtaga tattgaggtc acagattcat acaaagactc aaacaaattg 4801 gacatgtcaa gagcagtcga gatgtgcaaa ccagacggct gtgcccccgc caattacaaa 4861 agatgctgcc cattgatttg tggaaaggct attcaattca gagatcgtag aactaatgca 4921 agatccacta ttgatatgct agtaactgat atcatcaagg agtatagaac cagaaacagt 4981 acacaggata aactggaagc tctatttcag ggacctccac agtttaaaga gatcaaaatt 5041 tcagtcaccc cagatacacc agctcctgat gctataaatg accttcttag gtcagtggat 5101 tctcaagaag ttagggatta ttgccaaaag aagggatgga ttgtaataca cccatcaaat 5161 gaactactag tagaaaaaca catcagcaga gcttttatta ctctgcaagc cattgccacc 5221 tttgtatcaa tagctggtgt agtttatgtt atatataaac tttttgctgg cattcagggt 5281 ccatacacag ggatccccaa tcctaaaccc aaagtaccct ctctcagaac agctaaagtg 5341 caaggaccag ggttcgattt tgcacaagcc ataatgaaga aaaataccgt cattgcgagg 5401 actgaaaagg gtgagttcac catgttgggt gtatatgata gggtagcggt catccccaca 5461 cacgcgtctg ttggggaaac catttacatt gatgatgtag agactagagt tttagatgcg 5521 tgtgcactta gagacttgac tgatacaaac ttagagataa ccatagtcaa attggaccgt 5581 aatcaaaagt tcagagatat cagacatttt ctgcccaggt acgaggatga ttacaatgat 5641 gctgtgctta gcgtacacac atcaaaattc ccaaatatgt atattccagt tggacaagtc 5701 accaattatg gcttcttgaa cctaggtggt acaccgacac accgcatttt aatgtataac 5761 ttcccaacaa gagctggcca gtgtggtggt gtggtgacaa ctacaggtaa ggtgatagga 5821 atacatgtag gtggaaatgg agctcaagga tttgcagcaa tgctactgca ctcttacttt 5881 accgacacac aaggtgagat agttagtagt gagaagagtg gggtgtgcat taatgcacca 5941 gcaaaaacta aactccaacc cagtgttttc catcaagttt ttgaaggttc aaaggaacca 6001 gcagttctca atccaaaaga tcctaggctt aaaacagatt ttgaggaagc cattttctca 6061 aaatatacag gtaacaaaat tatgttaatg gatgagtaca tggaagaggc agtggatcat 6121 tatgtggggt gcttagaacc attagatatc agtgtggatc ccatacccct ggaaagtgcc 6181 atgtatggaa tggatggtct tgaggcatta gacttaacca ccagtgcagg attcccatac 6241 ttactacaag ggaagaagaa aagggatata tttaatagac acactagaga caccagtgaa 6301 atgacaaaga tgttagaaaa atatggagtt gacctaccct ttgtaacctt tgtaaaagat 6361 gaacttagat caagagaaaa agttgaaaaa gggaaatcac gcctgattga ggccagttcc 6421 ttgaatgact cagttgctat gagggttgcc tttgggaacc tttacgccac atttcacaac 6481 aatccaggta cagcaaccgg tagtgcagtt ggttgtgacc cagatatatt ttggtcaaaa 6541 atccctattt tattagatgg agaaatcttt gcttttgatt acactggcta tgatgctagt 6601 ttgtcaccag tgtggtttgc ctgtttaaag aaagttctaa ttaagttagg ttacacacat 6661 caaacatcct ttatagatta tttgtgtcac tcggtacatt tatataagga cagaaaatac 6721 atagttaatg gtgggatgcc ctctggttct tcaggtacca gcatattcaa cactatgatc 6781 aataatataa tcataagaac tctattaatt agggtctaca aaggcattga cttggaccag 6841 ttcaaaatga ttgcctatgg ggatgatgtt attgctagct acccacataa aattgatcca 6901 ggtttactag cggaagcagg caaacattat ggattagtaa tgacaccagc agacaaagga 6961 accagttttg ttgacacaaa ttgggaaaac gtaactttct taaaaagata tttcagagca 7021 gatgatcaat acccctttct catacatcca gtgatgccaa tgaaggagat acatgaatct 7081 attagatgga ctaaagatcc cagaaacaca caggatcatg ttaggtcttt gtgctacctc 7141 gcatggcata atggagagga ggcttacaat gaattttgta gaaaaatcag aagtgtgcct 7201 gtgggaaggg cattgacact acctgcatac tctagtctca gacggaaatg gttagattcg 7261 ttttagacaa ctctaattga aacccaagtt atagtcactt tcatttagag gtaaattttg 7321 gtcacttggg ggc
niman Posted September 22, 2016 Author Report Posted September 22, 2016 Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KX675261.1| Enterovirus D68 strain USA/FL/2016-19504, complete genome 11844 11844 100% 0.0 100% KX675261.1 Select seq gb|KX675263.1| Enterovirus D68 strain USA/TX/2016-19506, complete genome 11757 11757 100% 0.0 99% KX675263.1 Select seq gb|KU982559.1| Enterovirus D68 isolate EVD68/SZ02/CHN/2015, complete genome 11537 11537 100% 0.0 99% KU982559.1 Select seq gb|KU982558.1| Enterovirus D68 isolate EVD68/SZ01/CHN/2015, complete genome 11519 11519 100% 0.0 99% KU982558.1 Select seq gb|KX675262.1| Enterovirus D68 strain USA/NY/2016-19505, complete genome 11441 11441 100% 0.0 99% KX675262.1 Select seq gb|KT280500.1| Enterovirus D68 isolate 2014-R0672, complete genome 11185 11185 100% 0.0 98% KT280500.1 Select seq gb|KT711083.1| Enterovirus D68 isolate TW-00785-2014, complete genome 11176 11176 100% 0.0 98% KT711083.1 Select seq gb|KT711082.1| Enterovirus D68 isolate TW-00898-2014, complete genome 11162 11162 100% 0.0 98% KT711082.1 Select seq gb|KT711078.1| Enterovirus D68 isolate TW-00880-2014, complete genome 11162 11162 100% 0.0 98% KT711078.1 Select seq gb|KT711085.1| Enterovirus D68 isolate TW-00928-2014, complete genome 11149 11149 100% 0.0 98% KT711085.1 Select seq gb|KT711079.1| Enterovirus D68 isolate TW-00893-2014, complete genome 11149 11149 100% 0.0 98% KT711079.1 Select seq gb|KP240936.1| Enterovirus D68 isolate Beijing-R0132, complete genome 11149 11149 100% 0.0 98% KP240936.1 Select seq gb|KT711084.1| Enterovirus D68 isolate TW-00821-2014, complete genome 11144 11144 100% 0.0 98% KT711084.1 Select seq gb|KT285485.1| Enterovirus D68 isolate BCH4235A, complete genome 11135 11135 100% 0.0 98% KT285485.1 Select seq gb|KT711088.1| Enterovirus D68 isolate TW-02795-2014, complete genome 11126 11126 100% 0.0 98% KT711088.1 Select seq gb|KT711081.1| Enterovirus D68 isolate TW-00932-2014, complete genome 11126 11126 100% 0.0 98% KT711081.1 Select seq gb|KT711087.1| Enterovirus D68 isolate TW-02809-2014, complete genome 11122 11122 100% 0.0 98% KT711087.1 Select seq gb|KT280496.1| Enterovirus D68 isolate 2014-R1357, complete genome 11117 11117 100% 0.0 98% KT280496.1 Select seq gb|KT711080.1| Enterovirus D68 isolate TW-00909-2014, complete genome 11099 11099 100% 0.0 97% KT711080.1 Select seq gb|KT280497.1| Enterovirus D68 isolate 2014-R1153, complete genome 11095 11095 100% 0.0 97% KT280497.1 Select seq gb|KT711086.1| Enterovirus D68 isolate TW-02512-2014, complete genome 11090 11090 100% 0.0 97% KT711086.1 Select seq gb|KT280499.1| Enterovirus D68 isolate 2014-R970, complete genome 11086 11086 100% 0.0 97% KT280499.1 Select seq gb|KT280498.1| Enterovirus D68 isolate 2014-R1011, complete genome 11086 11086 100% 0.0 97% KT280498.1 Select seq gb|KT803592.1| Enterovirus D68 isolate CHN/CQ7188/2014 polyprotein gene, partial cds 11003 11003 98% 0.0 98% KT803592.1 Select seq gb|KT803590.1| Enterovirus D68 isolate CHN/CQ5571/2013 polyprotein gene, partial cds 11003 11003 98% 0.0 98% KT803590.1 Select seq gb|KT803598.1| Enterovirus D68 isolate CHN/CQ7174/2014 polyprotein gene, partial cds 10994 10994 98% 0.0 98% KT803598.1 Select seq gb|KT803595.1| Enterovirus D68 isolate CHN/CQ7280/2014 polyprotein gene, partial cds 10962 10962 98% 0.0 98% KT803595.1 Select seq gb|KT803594.1| Enterovirus D68 isolate CHN/CQ7214/2014 polyprotein gene, partial cds 10962 10962 98% 0.0 98% KT803594.1 Select seq gb|KU982561.1| Enterovirus D68 isolate EVD68/SZ04/CHN/2015, complete genome 10954 10954 100% 0.0 97% KU982561.1 Select seq gb|KT803596.1| Enterovirus D68 isolate CHN/CQ7226/2014 polyprotein gene, partial cds 10953 10953 98% 0.0 98% KT803596.1 Select seq gb|KT803597.1| Enterovirus D68 isolate CHN/CQ7233/2014 polyprotein gene, partial cds 10949 10949 98% 0.0 98% KT803597.1 Select seq gb|KT803593.1| Enterovirus D68 isolate CHN/CQ7208/2014 polyprotein gene, partial cds 10949 10949 98% 0.0 98% KT803593.1 Select seq gb|KT803599.1| Enterovirus D68 isolate CHN/CQ7225/2014 polyprotein gene, partial cds 10935 10935 98% 0.0 97% KT803599.1 Select seq gb|KT803600.1| Enterovirus D68 isolate CHN/CQ7360/2014 polyprotein gene, partial cds 10926 10926 98% 0.0 97% KT803600.1 Select seq gb|KT803591.1| Enterovirus D68 isolate CHN/CQ7170/2014 polyprotein gene, partial cds 10922 10922 98% 0.0 97% KT803591.1 Select seq gb|KP114664.1| Enterovirus D68 isolate EV68_Alberta2985_2014 polyprotein gene, partial cds 10888 10888 97% 0.0 98% KP114664.1 Select seq gb|KM892501.1| Enterovirus D68 isolate CA/AFP/11-1767, complete genome 10819 10819 100% 0.0 97% KM892501.1 Select seq gb|KT285320.1| Enterovirus D68 isolate 2011-21282, complete genome 10792 10792 100% 0.0 96% KT285320.1 Select seq gb|KT280503.1| Enterovirus D68 isolate 2011-21186, complete genome 10761 10761 100% 0.0 96% KT280503.1 Select seq gb|KX255370.1| Enterovirus D68 strain EV-D68/Homo sapiens/USA/U4470/2012, complete genome 10729 10729 100% 0.0 96% KX255370.1 Select seq gb|KX255356.1| Enterovirus D68 strain EV-D68/Homo sapiens/USA/U4489/2012, complete genome 10725 10725 100% 0.0 96% KX255356.1 Select seq gb|KX255399.1| Enterovirus D68 strain EV-D68/Homo sapiens/USA/U4486/2012, complete genome 10716 10716 100% 0.0 96% KX255399.1 Select seq gb|KX255365.1| Enterovirus D68 strain EV-D68/Homo sapiens/USA/O466a/2012, complete genome 10716 10716 100% 0.0 96% KX255365.1 Select seq gb|KX255377.1| Enterovirus D68 strain EV-D68/Homo sapiens/USA/O774a/2012, complete genome 10711 10711 100% 0.0 96% KX255377.1 Select seq gb|KX255414.1| Enterovirus D68 strain EV-D68/Homo sapiens/USA/O775a/2012, complete genome 10698 10698 100% 0.0 96% KX255414.1 Select seq gb|KX255383.1| Enterovirus D68 strain EV-D68/Homo sapiens/USA/O810a/2012, complete genome 10680 10680 100% 0.0 96% KX255383.1 Select seq gb|KM361523.1| Enterovirus sp. isolate CU134 polyprotein gene, partial cds 10671 10671 98% 0.0 97% KM361523.1 Select seq gb|KT318494.1| Enterovirus D68 isolate 1-I8/TW/2008, complete genome 10648 10648 100% 0.0 96% KT318494.1 Select seq gb|KX255406.1| Enterovirus D68 strain EV-D68/Homo sapiens/USA/O4415/2013, complete genome 10630 10630 100% 0.0 96% KX255406.1 Select seq gb|KX255384.1| Enterovirus D68 strain EV-D68/Homo sapiens/USA/O4413/2013, complete genome 10630 10630 100% 0.0 96% KX255384.1 Select seq gb|KX255368.1| Enterovirus D68 strain EV-D68/Homo sapiens/USA/O4417/2013, complete genome 10626 10626 100% 0.0 96% KX255368.1 Select seq gb|KM361524.1| Enterovirus sp. isolate CU171 polyprotein gene, partial cds 10626 10626 98% 0.0 96% KM361524.1 Select seq gb|KX433165.1| Enterovirus D68 strain EV-D68/Homo sapiens/USA/O4444/2013, complete genome 10621 10621 100% 0.0 96% KX433165.1 Select seq gb|KX255398.1| Enterovirus D68 strain EV-D68/Homo sapiens/USA/O4446/2013, complete genome 10621 10621 100% 0.0 96% KX255398.1 Select seq gb|KX255387.1| Enterovirus D68 strain EV-D68/Homo sapiens/USA/O4445/2013, complete genome 10621 10621 100% 0.0 96% KX255387.1 Select seq gb|KT803589.1| Enterovirus D68 isolate CHN/CQ2860/2012 polyprotein gene, partial cds 10610 10610 98% 0.0 96% KT803589.1 Select seq gb|KX255403.1| Enterovirus D68 strain EV-D68/Homo sapiens/USA/C7716/2014, complete genome 10608 10608 100% 0.0 96% KX255403.1 Select seq gb|KX255390.1| Enterovirus D68 strain EV-D68/Homo sapiens/USA/C7714/2014, complete genome 10608 10608 100% 0.0 96% KX255390.1 Select seq gb|KX255362.1| Enterovirus D68 strain EV-D68/Homo sapiens/USA/C7715/2014, complete genome 10608 10608 100% 0.0 96% KX255362.1 Select seq gb|KT280504.1| Enterovirus D68 isolate 2013-0720-6, complete genome 10608 10608 100% 0.0 96% KT280504.1 Select seq gb|KT347254.1| Enterovirus D68 strain EVD68/Homo sapiens/USA/MO33/2014, complete genome 10603 10603 100% 0.0 96% KT347254.1 Select seq gb|KP100794.1| Enterovirus D68 strain US/CO/13-60 polyprotein gene, complete cds 10599 10599 100% 0.0 96% KP100794.1 Select seq gb|KX255378.1| Enterovirus D68 strain EV-D68/Homo sapiens/USA/C7729/2014, complete genome 10590 10590 100% 0.0 96% KX255378.1 Select seq gb|KT347258.1| Enterovirus D68 strain EVD68/Homo sapiens/USA/MO12/2014, complete genome 10581 10581 100% 0.0 96% KT347258.1 Select seq gb|KT347252.1| Enterovirus D68 strain EVD68/Homo sapiens/USA/MO51/2014, complete genome 10581 10581 100% 0.0 96% KT347252.1 Select seq gb|KX351812.1| Enterovirus D strain EV-D68/Homo sapiens/USA/SSENT10/2014, complete genome 10576 10576 100% 0.0 96% KX351812.1 Select seq gb|KX351801.1| Enterovirus D strain EV-D68/Homo sapiens/USA/SSENT37/2014, complete genome 10576 10576 100% 0.0 96% KX351801.1 Select seq gb|KX255385.1| Enterovirus D68 strain EV-D68/Homo sapiens/USA/C7733/2014, complete genome 10576 10576 100% 0.0 96% KX255385.1 Select seq gb|KX255379.1| Enterovirus D68 strain EV-D68/Homo sapiens/USA/C7793/2014, complete genome 10576 10576 100% 0.0 96% KX255379.1 Select seq gb|KX351794.1| Enterovirus D strain EV-D68/Homo sapiens/USA/SSENT29/2014, complete genome 10572 10572 100% 0.0 96% KX351794.1 Select seq gb|KX255354.1| Enterovirus D68 strain EV-D68/Homo sapiens/USA/C7731/2014, complete genome 10572 10572 100% 0.0 96% KX255354.1 Select seq gb|KT347233.1| Enterovirus D68 strain EVD68/Homo sapiens/USA/MO19/2014, complete genome 10572 10572 100% 0.0 96% KT347233.1 Select seq gb|KX351820.1| Enterovirus D strain EV-D68/Homo sapiens/USA/SSENT07/2014, complete genome 10567 10567 100% 0.0 96% KX351820.1 Select seq gb|KX351796.1| Enterovirus D strain EV-D68/Homo sapiens/USA/SSENT21/2014, complete genome 10567 10567 100% 0.0 96% KX351796.1 Select seq gb|KX255415.1| Enterovirus D68 strain EV-D68/Homo sapiens/USA/C7721/2014, complete genome 10567 10567 100% 0.0 96% KX255415.1 Select seq gb|KX255411.1| Enterovirus D68 strain EV-D68/Homo sapiens/USA/C7730/2014, complete genome 10567 10567 100% 0.0 96% KX255411.1 Select seq gb|KX255352.1| Enterovirus D68 strain EV-D68/Homo sapiens/USA/C7720/2014, complete genome 10567 10567 100% 0.0 96% KX255352.1 Select seq gb|KT835407.1| Enterovirus D68 strain EV68/Ontario/C818710/2014, partial genome 10567 10567 100% 0.0 96% KT835407.1 Select seq gb|KT347276.1| Enterovirus D68 strain EVD68/Homo sapiens/USA/MO21/2014, complete genome 10567 10567 100% 0.0 96% KT347276.1 Select seq gb|KX351830.1| Enterovirus D strain EV-D68/Homo sapiens/USA/SSENT24/2014, complete genome 10563 10563 100% 0.0 96% KX351830.1 Select seq gb|KT347278.1| Enterovirus D68 strain EVD68/Homo sapiens/USA/MO8/2014, complete genome 10563 10563 100% 0.0 96% KT347278.1 Select seq gb|KT347275.1| Enterovirus D68 strain EVD68/Homo sapiens/USA/MO35/2014, complete genome 10563 10563 100% 0.0 96% KT347275.1 Select seq gb|KT347248.1| Enterovirus D68 strain EVD68/Homo sapiens/USA/MO13/2014, complete genome 10558 10558 100% 0.0 96% KT347248.1 Select seq gb|KP745758.1| Enterovirus D68 isolate NY263 polyprotein gene, complete cds 10558 10558 100% 0.0 96% KP745758.1 Select seq gb|KP745754.1| Enterovirus D68 isolate NY130 polyprotein gene, complete cds 10558 10558 100% 0.0 96% KP745754.1 Select seq gb|KM851228.1| Enterovirus D68 strain US/MO/14-18950, partial genome 10558 10558 100% 0.0 96% KM851228.1 Select seq gb|KX433167.1| Enterovirus D68 strain EV-D68/Homo sapiens/USA/U797/2007, complete genome 10554 10554 100% 0.0 96% KX433167.1 Select seq gb|KX433161.1| Enterovirus D68 strain EV-D68/Homo sapiens/USA/C7791/2014, complete genome 10554 10554 100% 0.0 96% KX433161.1 Select seq gb|KX255407.1| Enterovirus D68 strain EV-D68/Homo sapiens/USA/C7743/2014, complete genome 10554 10554 100% 0.0 96% KX255407.1 Select seq gb|KT347266.1| Enterovirus D68 strain EVD68/Homo sapiens/USA/MO27/2014, complete genome 10549 10549 100% 0.0 96% KT347266.1 Select seq gb|KT347264.1| Enterovirus D68 strain EVD68/Homo sapiens/USA/MO22/2014, complete genome 10549 10549 100% 0.0 96% KT347264.1 Select seq gb|KT455430.1| Enterovirus D68 isolate NYS14_32368, partial genome 10545 10545 100% 0.0 96% KT455430.1 Select seq gb|KT455421.1| Enterovirus D68 isolate NYS14-27898, partial genome 10545 10609 100% 0.0 96% KT455421.1 Select seq gb|KX351811.1| Enterovirus D strain EV-D68/Homo sapiens/USA/SSENT08/2014, complete genome 10545 10545 100% 0.0 96% KX351811.1 Select seq gb|KT835408.1| Enterovirus D68 strain EV68/Ontario/C818712/2014, partial genome 10545 10545 100% 0.0 96% KT835408.1 Select seq gb|KT347249.1| Enterovirus D68 strain EVD68/Homo sapiens/USA/MO16/2014, complete genome 10545 10545 100% 0.0 96% KT347249.1 Select seq gb|KT347241.1| Enterovirus D68 strain EVD68/Homo sapiens/USA/MO18/2014, complete genome 10545 10545 100% 0.0 96% KT347241.1 Select seq gb|KP745770.1| Enterovirus D68 isolate NY77 polyprotein gene, complete cds 10545 10545 100% 0.0 96% KP745770.1 Select seq gb|KP745751.1| Enterovirus D68 isolate NY120, complete genome 10545 10545 100% 0.0 96% KP745751.1 Select seq gb|KX351795.1| Enterovirus D strain EV-D68/Homo sapiens/USA/SSENT27/2014, complete genome 10540 10540 100% 0.0 96% KX351795.1
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