niman Posted September 24, 2016 Report Share Posted September 24, 2016 (edited) Last week the Andersen Lab at Scripps http://andersen-lab.com/ released a series of sequences from 2 patients and 3 mosquito batches collected in Miami. These data indicated all five sequences fell on the same branch of a phylogenetic tree which was shared by sequences from an English traveler to Guadeloupe and an Italian traveler to the Dominican Republic (see tree posted below). The lab is preparing to release another series, and has posted the sequence data on their website. Included are six full Zika sequences from collections between July 16 and August 17. The July collections (ZF 21 and ZF 22) are likely sequences from Wynwood, based on descriptions of local Florida cases. All six of the sequences in progress fall on the same branch as the five sequences deposited at Genbank (see second tree posted below), raising concerns of an introduction into Florida that significantly pre-dates Wynwood.. Edited September 24, 2016 by niman Link to comment Share on other sites More sharing options...
niman Posted September 24, 2016 Author Report Share Posted September 24, 2016 Initial branch with five Miami sequences at Genbank Link to comment Share on other sites More sharing options...
niman Posted September 24, 2016 Author Report Share Posted September 24, 2016 Updated tree with Wynwood sequences Link to comment Share on other sites More sharing options...
niman Posted September 24, 2016 Author Report Share Posted September 24, 2016 LOCUS KX838904 10524 bp RNA linear VRL 22-SEP-2016 DEFINITION Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM1-7501 polyprotein gene, complete cds. ACCESSION KX838904 VERSION KX838904.1 GI:1063797021 DBLINK BioProject: PRJNA342539 BioSample: SAMN05761900 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10524) AUTHORS Grubaugh,N., Paul,L., Gangavarupu,K., Oliveira,G., Robles-Sikisaka,R., Michael,S., Isern,S. and Andersen,K. TITLE Zika virus sequences from Florida, USA, 2016 JOURNAL Unpublished REFERENCE 2 (bases 1 to 10524) AUTHORS Grubaugh,N., Paul,L., Gangavarupu,K., Oliveira,G., Robles-Sikisaka,R., Michael,S., Isern,S. and Andersen,K. TITLE Direct Submission JOURNAL Submitted (12-SEP-2016) Department of Immunology and Microbial Science, The Scripps Research Institute, 10550 North Torrey Pines Road, IMM-210, La Jolla, CA 92037, USA COMMENT ##Assembly-Data-START## Assembly Method :: NovoAlign v. V3.04 Coverage :: 160,000 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10524 /organism="Zika virus" /mol_type="genomic RNA" /isolate="ZIKV/Aedes_aegypti/USA/2016/ZM1-7501" /isolation_source="pool of 39 adult mosquitoes" /host="Aedes aegypti" /db_xref="taxon:64320" /country="USA: Miami, Florida" /collection_date="22-Aug-2016" Link to comment Share on other sites More sharing options...
niman Posted September 24, 2016 Author Report Share Posted September 24, 2016 LOCUS KX838905 10475 bp RNA linear VRL 22-SEP-2016 DEFINITION Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM2-7719 polyprotein gene, complete cds. ACCESSION KX838905 VERSION KX838905.1 GI:1063797023 DBLINK BioProject: PRJNA342539 BioSample: SAMN05761899 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10475) AUTHORS Grubaugh,N., Paul,L., Gangavarupu,K., Oliveira,G., Robles-Sikisaka,R., Michael,S., Isern,S. and Andersen,K. TITLE Zika virus sequences from Florida, USA, 2016 JOURNAL Unpublished REFERENCE 2 (bases 1 to 10475) AUTHORS Grubaugh,N., Paul,L., Gangavarupu,K., Oliveira,G., Robles-Sikisaka,R., Michael,S., Isern,S. and Andersen,K. TITLE Direct Submission JOURNAL Submitted (12-SEP-2016) Department of Immunology and Microbial Science, The Scripps Research Institute, 10550 North Torrey Pines Road, IMM-210, La Jolla, CA 92037, USA COMMENT ##Assembly-Data-START## Assembly Method :: NovoAlign v. V3.04 Coverage :: 160,000 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10475 /organism="Zika virus" /mol_type="genomic RNA" /isolate="ZIKV/Aedes_aegypti/USA/2016/ZM2-7719" /isolation_source="pool of 25 adult mosquitoes" /host="Aedes aegypti" /db_xref="taxon:64320" /country="USA: Miami, Florida" /collection_date="23-Aug-2016" Link to comment Share on other sites More sharing options...
niman Posted September 24, 2016 Author Report Share Posted September 24, 2016 LOCUS KX838906 10610 bp RNA linear VRL 22-SEP-2016 DEFINITION Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM3-7729 polyprotein gene, complete cds. ACCESSION KX838906 VERSION KX838906.1 GI:1063797025 DBLINK BioProject: PRJNA342539 BioSample: SAMN05761898 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10610) AUTHORS Grubaugh,N., Paul,L., Gangavarupu,K., Oliveira,G., Robles-Sikisaka,R., Michael,S., Isern,S. and Andersen,K. TITLE Zika virus sequences from Florida, USA, 2016 JOURNAL Unpublished REFERENCE 2 (bases 1 to 10610) AUTHORS Grubaugh,N., Paul,L., Gangavarupu,K., Oliveira,G., Robles-Sikisaka,R., Michael,S., Isern,S. and Andersen,K. TITLE Direct Submission JOURNAL Submitted (12-SEP-2016) Department of Immunology and Microbial Science, The Scripps Research Institute, 10550 North Torrey Pines Road, IMM-210, La Jolla, CA 92037, USA COMMENT ##Assembly-Data-START## Assembly Method :: NovoAlign v. V3.04 Coverage :: 160,000 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10610 /organism="Zika virus" /mol_type="genomic RNA" /isolate="ZIKV/Aedes_aegypti/USA/2016/ZM3-7729" /isolation_source="pool of 15 adult mosquitoes" /host="Aedes aegypti" /db_xref="taxon:64320" /country="USA: Miami, Florida" /collection_date="23-Aug-2016" Link to comment Share on other sites More sharing options...
niman Posted September 24, 2016 Author Report Share Posted September 24, 2016 LOCUS KX842449 10388 bp RNA linear VRL 22-SEP-2016 DEFINITION Zika virus isolate ZIKV/Human/USA/2016/ZF10.UR-010 polyprotein gene, complete cds. ACCESSION KX842449 VERSION KX842449.1 GI:1063906997 DBLINK BioProject: PRJNA342539 BioSample: SAMN05792872 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10388) AUTHORS Grubaugh,N., Tan,A., Gangavarupu,K., Oliveira,G., Robles-Sikisaka,R., Cone,M., Kopp,E., Hogan,K., Cannons,A., Michael,S., Isern,S. and Andersen,K. TITLE Zika virus sequences from Florida, USA, 2016 JOURNAL Unpublished REFERENCE 2 (bases 1 to 10388) AUTHORS Grubaugh,N., Tan,A., Gangavarupu,K., Oliveira,G., Robles-Sikisaka,R., Cone,M., Kopp,E., Hogan,K., Cannons,A., Michael,S., Isern,S. and Andersen,K. TITLE Direct Submission JOURNAL Submitted (13-SEP-2016) Department of Immunology and Microbial Science, The Scripps Research Institute, 10550 North Torrey Pines Road, IMM-210, La Jolla, CA 92037, USA COMMENT ##Assembly-Data-START## Assembly Method :: NovoAlign v. V3.04 Coverage :: 80,000 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10388 /organism="Zika virus" /mol_type="genomic RNA" /isolate="ZIKV/Human/USA/2016/ZF10.UR-010" /isolation_source="urine" /host="Homo sapiens" /db_xref="taxon:64320" /country="USA: Miami, Florida" /collection_date="22-Jun-2016" /note="direct clinical sequencing; person returned from Cuba 21 days prior to sample collection, but infection may have occurred in Miami" Link to comment Share on other sites More sharing options...
niman Posted September 24, 2016 Author Report Share Posted September 24, 2016 LOCUS KX832731 10467 bp RNA linear VRL 22-SEP-2016 DEFINITION Zika virus isolate ZIKV/Human/USA/2016/ZL2.SA-Hu0015 polyprotein gene, complete cds. ACCESSION KX832731 VERSION KX832731.1 GI:1063797019 DBLINK BioProject: PRJNA342539 BioSample: SAMN05761901 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10467) AUTHORS Grubaugh,N., Gangavarupu,K., Oliveira,G., Robles-Sikisaka,R., Watkins,D., Lichtenberger,P., Ricciardi,M., Bailey,V., Magnani,D. and Andersen,K. TITLE Zika virus sequences from Florida, USA, 2016 JOURNAL Unpublished REFERENCE 2 (bases 1 to 10467) AUTHORS Grubaugh,N., Gangavarupu,K., Oliveira,G., Robles-Sikisaka,R., Watkins,D., Lichtenberger,P., Ricciardi,M., Bailey,V., Magnani,D. and Andersen,K. TITLE Direct Submission JOURNAL Submitted (11-SEP-2016) Department of Immunology and Microbial Science, The Scripps Research Institute, 10550 North Torrey Pines Road, IMM-210, La Jolla, CA 92037, USA COMMENT ##Assembly-Data-START## Assembly Method :: NovoAlign v. V2 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10467 /organism="Zika virus" /mol_type="genomic RNA" /isolate="ZIKV/Human/USA/2016/ZL2.SA-Hu0015" /isolation_source="saliva" /host="Homo sapiens" /db_xref="taxon:64320" /country="USA: Miami, Florida" /collection_date="24-Aug-2016" /note="direct clinical sequencing" Link to comment Share on other sites More sharing options...
niman Posted September 24, 2016 Author Report Share Posted September 24, 2016 Discussion of new Zika sequences http://recombinomics.co/thedrnimanshow/2016/09/092416.mp3 Link to comment Share on other sites More sharing options...
niman Posted September 24, 2016 Author Report Share Posted September 24, 2016 (edited) ZF32_32U|XX|2016-08-05 matches Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KX838906.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM3-7729 polyprotein gene, complete cds 18493 18493 100% 0.0 99% KX838906.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 18429 18429 100% 0.0 99% KX673530.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 18426 18426 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 18424 18424 100% 0.0 99% KU853012.1 Select seq gb|KX842449.1| Zika virus isolate ZIKV/Human/USA/2016/ZF10.UR-010 polyprotein gene, complete cds 18417 18417 100% 0.0 99% KX842449.1 Select seq gb|KX838905.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM2-7719 polyprotein gene, complete cds 18411 18411 100% 0.0 99% KX838905.1 Select seq gb|KX838904.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM1-7501 polyprotein gene, complete cds 18408 18408 100% 0.0 99% KX838904.1 Select seq gb|KX832731.1| Zika virus isolate ZIKV/Human/USA/2016/ZL2.SA-Hu0015 polyprotein gene, complete cds 18408 18408 100% 0.0 99% KX832731.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 18336 18336 100% 0.0 99% KX447510.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 18330 18330 100% 0.0 99% KX280026.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 18330 18330 100% 0.0 99% KU729217.2 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 18327 18327 100% 0.0 99% KX447512.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 18327 18327 100% 0.0 99% KX369547.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 18327 18327 100% 0.0 99% KU509998.3 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 18321 18321 100% 0.0 99% KJ776791.2 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 18321 18321 100% 0.0 99% KX447509.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 18321 18321 100% 0.0 99% KU991811.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 18318 18318 100% 0.0 99% KX447513.1 Select seq gb|KX811222.1| Zika virus isolate Brazil_2015_MG, complete genome 18312 18312 100% 0.0 99% KX811222.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 18312 18312 100% 0.0 99% KX197205.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 18312 18312 100% 0.0 99% KX447515.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 18312 18312 100% 0.0 99% KX447511.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 18312 18312 100% 0.0 99% KU707826.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 18312 18312 100% 0.0 99% KU365779.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 18312 18312 100% 0.0 99% KU321639.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 18309 18309 100% 0.0 99% KX447514.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 18309 18309 100% 0.0 99% KX262887.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 18309 18309 100% 0.0 99% KX051563.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 18309 18309 100% 0.0 99% KU926309.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 18303 18303 100% 0.0 99% KX447516.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 18303 18303 100% 0.0 99% KU729218.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 18303 18303 100% 0.0 99% KU527068.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 18300 18300 100% 0.0 99% KX694534.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 18300 18300 100% 0.0 99% KX197192.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 18300 18300 100% 0.0 99% KU926310.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 18300 18300 100% 0.0 99% KU501217.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 18300 18300 100% 0.0 99% KU365780.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 18294 18294 100% 0.0 99% KU940228.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 18294 18294 100% 0.0 99% KU501216.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 18294 18294 100% 0.0 99% KU365777.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 18291 18291 100% 0.0 99% KU758877.1 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 18291 18291 100% 0.0 99% KX247632.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 18291 18291 100% 0.0 99% KX198135.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 18285 18285 100% 0.0 99% KU647676.1 Select seq gb|KX856011.1| Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome 18282 18282 100% 0.0 99% KX856011.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 18282 18282 100% 0.0 99% KX447517.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 18282 18282 100% 0.0 99% KX446951.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 18282 18282 100% 0.0 99% KX247646.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 18282 18282 100% 0.0 99% KX156776.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 18282 18282 100% 0.0 99% KU501215.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 18282 18282 100% 0.0 99% KU365778.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 18282 18282 100% 0.0 99% KU312312.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 18278 18278 99% 0.0 99% KU497555.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 18276 18276 100% 0.0 99% KX601168.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 18276 18276 100% 0.0 99% KX520666.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 18276 18276 100% 0.0 99% KX446950.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 18276 18276 100% 0.0 99% KX087101.2 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 18276 18276 100% 0.0 99% KX156774.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 18273 18273 100% 0.0 99% KU820897.5 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 18273 18273 100% 0.0 99% KX377337.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 18273 18273 100% 0.0 99% KU937936.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 18273 18273 100% 0.0 99% KX156775.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 18273 18273 100% 0.0 99% KX087102.1 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 18267 18267 100% 0.0 99% KU870645.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 18267 18267 100% 0.0 99% KU922960.1 Select seq gb|KX806557.1| Zika virus isolate TS17-2016, complete genome 18264 18264 100% 0.0 99% KX806557.1 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 18264 18264 100% 0.0 99% KX766029.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 18264 18264 100% 0.0 99% KX548902.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 18264 18264 100% 0.0 99% KU922923.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 18254 18254 100% 0.0 99% KX702400.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 18254 18254 100% 0.0 99% KU820898.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 18249 18249 100% 0.0 99% KX056898.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 18249 18249 100% 0.0 99% KU955590.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 18247 18247 100% 0.0 99% KX766028.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 18245 18245 100% 0.0 99% KU740184.2 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 18245 18245 100% 0.0 99% KU761564.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 18231 18231 100% 0.0 99% KX117076.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 18222 18222 100% 0.0 99% KX185891.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 18222 18222 100% 0.0 99% KU963796.1 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 18218 18218 100% 0.0 99% KX253996.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 18218 18218 100% 0.0 99% KU955589.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 18218 18218 100% 0.0 99% KU820899.2 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 18215 18215 100% 0.0 99% KX266255.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 18213 18213 100% 0.0 99% KU866423.2 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 18200 18200 99% 0.0 99% KU940224.1 Select seq gb|KU744693.1| Zika virus isolate VE_Ganxian, complete genome 18087 18087 100% 0.0 99% KU744693.1 Select seq gb|KX827309.1| Zika virus isolate ZKA-16-291 polyprotein gene, complete cds 18074 18074 100% 0.0 99% KX827309.1 Select seq gb|KX813683.1| Zika virus isolate ZKA-16-097 polyprotein gene, complete cds 18060 18060 100% 0.0 99% KX813683.1 Select seq gb|KU681081.3| Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome 18015 18015 100% 0.0 99% KU681081.3 Select seq gb|KX694532.1| Zika virus strain ZIKV/Homo sapiens/THA/PLCal_ZV/2013, complete genome 17894 17894 100% 0.0 99% KX694532.1 Select seq gb|KU955593.1| Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome 17699 17699 100% 0.0 98% KU955593.1 Select seq gb|JN860885.1| Zika virus isolate FSS13025 polyprotein gene, partial cds 17699 17699 99% 0.0 98% JN860885.1 Select seq gb|KF993678.1| Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds 17661 17661 98% 0.0 99% KF993678.1 Select seq gb|EU545988.1| Zika virus polyprotein gene, complete cds 17553 17553 100% 0.0 98% EU545988.1 Select seq gb|KU681082.3| Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome 17407 17407 100% 0.0 98% KU681082.3 Select seq gb|KX601167.1| Zika virus strain ZIKV/Aedes sp./MYS/P6-740/1966, complete genome 16388 16388 100% 0.0 95% KX601167.1 Select seq gb|KX694533.1| Zika virus strain ZIKV/Aedes aegypti/MYS/P6-740/1966, complete genome 16379 16379 100% 0.0 95% KX694533.1 Select seq gb|HQ234499.1| Zika virus isolate P6-740 polyprotein gene, partial cds 16379 16379 99% 0.0 95% HQ234499.1 Select seq gb|KX377336.1| Zika virus strain P6-740, complete genome 16374 16374 100% 0.0 95% KX377336.1 Select seq gb|KX447518.1| Zika virus isolate 1_0117_PF polyprotein gene, partial cds 16190 16190 88% 0.0 99% KX447518.1 Edited September 24, 2016 by niman Link to comment Share on other sites More sharing options...
niman Posted September 24, 2016 Author Report Share Posted September 24, 2016 ZF21_21U|XX|2016-07-19 matches Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KX842449.1| Zika virus isolate ZIKV/Human/USA/2016/ZF10.UR-010 polyprotein gene, complete cds 18498 18498 100% 0.0 99% KX842449.1 Select seq gb|KX838905.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM2-7719 polyprotein gene, complete cds 18493 18493 100% 0.0 99% KX838905.1 Select seq gb|KX832731.1| Zika virus isolate ZIKV/Human/USA/2016/ZL2.SA-Hu0015 polyprotein gene, complete cds 18489 18489 100% 0.0 99% KX832731.1 Select seq gb|KX838904.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM1-7501 polyprotein gene, complete cds 18480 18480 100% 0.0 99% KX838904.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 18444 18444 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 18442 18442 100% 0.0 99% KU853012.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 18420 18420 100% 0.0 99% KX673530.1 Select seq gb|KX838906.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM3-7729 polyprotein gene, complete cds 18411 18411 100% 0.0 99% KX838906.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 18354 18354 100% 0.0 99% KX447510.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 18348 18348 100% 0.0 99% KX280026.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 18345 18345 100% 0.0 99% KX447512.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 18345 18345 100% 0.0 99% KX369547.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 18345 18345 100% 0.0 99% KU509998.3 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 18339 18339 100% 0.0 99% KJ776791.2 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 18339 18339 100% 0.0 99% KX447509.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 18339 18339 100% 0.0 99% KU991811.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 18339 18339 100% 0.0 99% KU729217.2 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 18336 18336 100% 0.0 99% KX447513.1 Select seq gb|KX811222.1| Zika virus isolate Brazil_2015_MG, complete genome 18330 18330 100% 0.0 99% KX811222.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 18330 18330 100% 0.0 99% KX197205.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 18330 18330 100% 0.0 99% KX447515.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 18330 18330 100% 0.0 99% KX447511.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 18330 18330 100% 0.0 99% KU707826.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 18330 18330 100% 0.0 99% KU365779.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 18330 18330 100% 0.0 99% KU321639.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 18327 18327 100% 0.0 99% KX447514.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 18327 18327 100% 0.0 99% KX262887.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 18327 18327 100% 0.0 99% KX051563.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 18327 18327 100% 0.0 99% KU926309.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 18321 18321 100% 0.0 99% KX447516.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 18321 18321 100% 0.0 99% KU729218.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 18321 18321 100% 0.0 99% KU527068.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 18318 18318 100% 0.0 99% KX694534.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 18318 18318 100% 0.0 99% KX197192.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 18318 18318 100% 0.0 99% KU926310.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 18318 18318 100% 0.0 99% KU501217.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 18318 18318 100% 0.0 99% KU365780.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 18312 18312 100% 0.0 99% KU940228.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 18312 18312 100% 0.0 99% KU501216.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 18312 18312 100% 0.0 99% KU365777.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 18309 18309 100% 0.0 99% KU758877.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 18309 18309 100% 0.0 99% KX198135.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 18303 18303 100% 0.0 99% KU647676.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 18300 18300 100% 0.0 99% KX447517.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 18300 18300 100% 0.0 99% KX247646.1 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 18300 18300 100% 0.0 99% KX247632.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 18300 18300 100% 0.0 99% KX156776.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 18300 18300 100% 0.0 99% KU501215.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 18300 18300 100% 0.0 99% KU365778.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 18300 18300 100% 0.0 99% KU312312.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 18296 18296 99% 0.0 99% KU497555.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 18294 18294 100% 0.0 99% KX601168.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 18294 18294 100% 0.0 99% KX520666.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 18294 18294 100% 0.0 99% KX087101.2 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 18294 18294 100% 0.0 99% KX156774.1 Select seq gb|KX856011.1| Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome 18291 18291 100% 0.0 99% KX856011.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 18291 18291 100% 0.0 99% KU820897.5 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 18291 18291 100% 0.0 99% KX446951.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 18291 18291 100% 0.0 99% KX377337.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 18291 18291 100% 0.0 99% KU937936.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 18291 18291 100% 0.0 99% KX156775.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 18291 18291 100% 0.0 99% KX087102.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 18285 18285 100% 0.0 99% KX446950.1 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 18285 18285 100% 0.0 99% KU870645.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 18285 18285 100% 0.0 99% KU922960.1 Select seq gb|KX806557.1| Zika virus isolate TS17-2016, complete genome 18282 18282 100% 0.0 99% KX806557.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 18282 18282 100% 0.0 99% KX548902.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 18282 18282 100% 0.0 99% KU922923.1 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 18273 18273 100% 0.0 99% KX766029.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 18273 18273 100% 0.0 99% KX702400.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 18273 18273 100% 0.0 99% KU820898.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 18267 18267 100% 0.0 99% KX056898.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 18267 18267 100% 0.0 99% KU955590.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 18265 18265 100% 0.0 99% KX766028.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 18264 18264 100% 0.0 99% KU740184.2 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 18264 18264 100% 0.0 99% KU761564.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 18249 18249 100% 0.0 99% KX117076.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 18240 18240 100% 0.0 99% KX185891.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 18240 18240 100% 0.0 99% KU963796.1 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 18236 18236 100% 0.0 99% KX253996.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 18236 18236 100% 0.0 99% KU955589.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 18236 18236 100% 0.0 99% KU820899.2 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 18233 18233 100% 0.0 99% KX266255.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 18231 18231 100% 0.0 99% KU866423.2 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 18218 18218 99% 0.0 99% KU940224.1 Select seq gb|KU744693.1| Zika virus isolate VE_Ganxian, complete genome 18105 18105 100% 0.0 99% KU744693.1 Select seq gb|KX827309.1| Zika virus isolate ZKA-16-291 polyprotein gene, complete cds 18083 18083 100% 0.0 99% KX827309.1 Select seq gb|KX813683.1| Zika virus isolate ZKA-16-097 polyprotein gene, complete cds 18069 18069 100% 0.0 99% KX813683.1 Select seq gb|KU681081.3| Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome 18015 18015 100% 0.0 99% KU681081.3 Select seq gb|KX694532.1| Zika virus strain ZIKV/Homo sapiens/THA/PLCal_ZV/2013, complete genome 17894 17894 100% 0.0 99% KX694532.1 Select seq gb|KU955593.1| Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome 17708 17708 100% 0.0 98% KU955593.1 Select seq gb|JN860885.1| Zika virus isolate FSS13025 polyprotein gene, partial cds 17708 17708 99% 0.0 98% JN860885.1 Select seq gb|KF993678.1| Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds 17661 17661 98% 0.0 99% KF993678.1 Select seq gb|EU545988.1| Zika virus polyprotein gene, complete cds 17553 17553 100% 0.0 98% EU545988.1 Select seq gb|KU681082.3| Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome 17407 17407 100% 0.0 98% KU681082.3 Select seq gb|KX601167.1| Zika virus strain ZIKV/Aedes sp./MYS/P6-740/1966, complete genome 16379 16379 100% 0.0 95% KX601167.1 Select seq gb|KX694533.1| Zika virus strain ZIKV/Aedes aegypti/MYS/P6-740/1966, complete genome 16370 16370 100% 0.0 95% KX694533.1 Select seq gb|HQ234499.1| Zika virus isolate P6-740 polyprotein gene, partial cds 16370 16370 99% 0.0 95% HQ234499.1 Select seq gb|KX377336.1| Zika virus strain P6-740, complete genome 16365 16365 100% 0.0 95% KX377336.1 Select seq gb|KX447518.1| Zika virus isolate 1_0117_PF polyprotein gene, partial cds 16202 16202 88% 0.0 99% KX447518.1 Link to comment Share on other sites More sharing options...
niman Posted September 24, 2016 Author Report Share Posted September 24, 2016 (edited) ZF22_22U|XX|2016-07-16 matches Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KX842449.1| Zika virus isolate ZIKV/Human/USA/2016/ZF10.UR-010 polyprotein gene, complete cds 17454 18355 99% 0.0 99% KX842449.1 Select seq gb|KX838905.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM2-7719 polyprotein gene, complete cds 17445 18341 99% 0.0 99% KX838905.1 Select seq gb|KX832731.1| Zika virus isolate ZIKV/Human/USA/2016/ZL2.SA-Hu0015 polyprotein gene, complete cds 17445 18346 99% 0.0 99% KX832731.1 Select seq gb|KX838904.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM1-7501 polyprotein gene, complete cds 17436 18337 99% 0.0 99% KX838904.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 17416 18319 99% 0.0 99% KU853012.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 17414 18319 99% 0.0 99% KU853013.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 17387 18288 99% 0.0 99% KX673530.1 Select seq gb|KX838906.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM3-7729 polyprotein gene, complete cds 17373 18277 99% 0.0 99% KX838906.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 17324 18229 99% 0.0 99% KX447510.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 17319 18223 99% 0.0 99% KX280026.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 17315 18220 99% 0.0 99% KX447512.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 17315 18220 99% 0.0 99% KX369547.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 17315 18220 99% 0.0 99% KU509998.3 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 17315 18216 99% 0.0 99% KU991811.1 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 17310 18214 99% 0.0 99% KJ776791.2 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 17310 18214 99% 0.0 99% KX447509.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 17310 18214 99% 0.0 99% KU729217.2 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 17306 18207 99% 0.0 99% KX197205.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 17306 18211 99% 0.0 99% KX447513.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 17306 18207 99% 0.0 99% KU707826.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 17306 18207 99% 0.0 99% KU365779.1 Select seq gb|KX811222.1| Zika virus isolate Brazil_2015_MG, complete genome 17301 18205 99% 0.0 99% KX811222.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 17301 18205 99% 0.0 99% KX447515.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 17301 18205 99% 0.0 99% KX447511.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 17301 18202 99% 0.0 99% KU926309.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 17301 18205 99% 0.0 99% KU321639.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 17297 18202 99% 0.0 99% KX447514.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 17297 18202 99% 0.0 99% KX262887.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 17297 18202 99% 0.0 99% KX051563.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 17291 18196 99% 0.0 99% KX447516.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 17291 18196 99% 0.0 99% KU729218.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 17291 18196 99% 0.0 99% KU527068.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 17288 18193 99% 0.0 99% KX694534.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 17288 18189 99% 0.0 99% KX198135.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 17288 18193 99% 0.0 99% KX197192.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 17288 18189 99% 0.0 99% KU940228.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 17288 18193 99% 0.0 99% KU926310.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 17288 18193 99% 0.0 99% KU501217.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 17288 18193 99% 0.0 99% KU365780.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 17288 18189 99% 0.0 99% KU365777.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 17282 18184 99% 0.0 99% KU758877.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 17282 18187 99% 0.0 99% KU501216.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 17279 18175 99% 0.0 99% KX156776.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 17279 18180 99% 0.0 99% KU647676.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 17273 18169 99% 0.0 99% KX156774.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 17273 18171 99% 0.0 99% KU497555.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 17273 18175 99% 0.0 99% KU365778.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 17270 18175 99% 0.0 99% KX447517.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 17270 18171 99% 0.0 99% KX520666.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 17270 18175 99% 0.0 99% KX247646.1 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 17270 18175 99% 0.0 99% KX247632.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 17270 18166 99% 0.0 99% KX156775.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 17270 18175 99% 0.0 99% KU312312.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 17264 18166 99% 0.0 99% KU820897.5 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 17264 18166 99% 0.0 99% KX087102.1 Select seq gb|KX856011.1| Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome 17261 18166 99% 0.0 99% KX856011.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 17261 18157 99% 0.0 99% KX548902.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 17261 18166 99% 0.0 99% KX446951.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 17261 18166 99% 0.0 99% KU937936.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 17261 18162 99% 0.0 99% KU922960.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 17261 18166 99% 0.0 99% KU501215.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 17255 18160 99% 0.0 99% KX601168.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 17255 18160 99% 0.0 99% KX446950.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 17255 18160 99% 0.0 99% KX087101.2 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 17255 18160 99% 0.0 99% KU870645.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 17255 18157 99% 0.0 99% KU922923.1 Select seq gb|KX806557.1| Zika virus isolate TS17-2016, complete genome 17252 18157 99% 0.0 99% KX806557.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 17252 18157 99% 0.0 99% KX377337.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 17252 18148 99% 0.0 99% KU955590.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 17246 18148 99% 0.0 99% KX056898.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 17246 18151 99% 0.0 99% KU820898.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 17245 18146 99% 0.0 99% KX766028.1 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 17243 18148 99% 0.0 99% KX766029.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 17243 18148 99% 0.0 99% KX702400.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 17243 18144 99% 0.0 99% KU740184.2 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 17243 18144 99% 0.0 99% KU761564.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 17219 18124 99% 0.0 99% KX117076.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 17210 18115 99% 0.0 99% KX185891.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 17210 18115 99% 0.0 99% KU963796.1 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 17207 18112 99% 0.0 99% KX253996.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 17207 18112 99% 0.0 99% KU955589.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 17207 18112 99% 0.0 99% KU820899.2 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 17203 18108 99% 0.0 99% KX266255.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 17201 18106 99% 0.0 99% KU866423.2 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 17192 18093 98% 0.0 99% KU940224.1 Select seq gb|KU744693.1| Zika virus isolate VE_Ganxian, complete genome 17084 17980 99% 0.0 99% KU744693.1 Select seq gb|KX827309.1| Zika virus isolate ZKA-16-291 polyprotein gene, complete cds 17071 17964 99% 0.0 99% KX827309.1 Select seq gb|KX813683.1| Zika virus isolate ZKA-16-097 polyprotein gene, complete cds 17057 17949 99% 0.0 99% KX813683.1 Select seq gb|KU681081.3| Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome 16999 17882 99% 0.0 99% KU681081.3 Select seq gb|KX694532.1| Zika virus strain ZIKV/Homo sapiens/THA/PLCal_ZV/2013, complete genome 16886 17763 99% 0.0 99% KX694532.1 Select seq gb|JN860885.1| Zika virus isolate FSS13025 polyprotein gene, partial cds 16722 17574 99% 0.0 98% JN860885.1 Select seq gb|KU955593.1| Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome 16720 17576 99% 0.0 98% KU955593.1 Select seq gb|KF993678.1| Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds 16686 17533 98% 0.0 99% KF993678.1 Select seq gb|EU545988.1| Zika virus polyprotein gene, complete cds 16550 17419 99% 0.0 98% EU545988.1 Select seq gb|KU681082.3| Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome 16444 17282 99% 0.0 98% KU681082.3 Select seq gb|KX447518.1| Zika virus isolate 1_0117_PF polyprotein gene, partial cds 16199 16199 88% 0.0 99% KX447518.1 Select seq gb|KX601167.1| Zika virus strain ZIKV/Aedes sp./MYS/P6-740/1966, complete genome 15452 16272 99% 0.0 95% KX601167.1 Select seq gb|HQ234499.1| Zika virus isolate P6-740 polyprotein gene, partial cds 15447 16265 99% 0.0 95% HQ234499.1 Select seq gb|KX694533.1| Zika virus strain ZIKV/Aedes aegypti/MYS/P6-740/1966, complete genome 15443 16263 99% 0.0 95% KX694533.1 Select seq gb|KX377336.1| Zika virus strain P6-740, complete genome 15443 16263 99% 0.0 95% KX377336.1 Edited September 24, 2016 by niman Link to comment Share on other sites More sharing options...
niman Posted September 24, 2016 Author Report Share Posted September 24, 2016 ZF30_30U|XX|2016-08-02 matches Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KX842449.1| Zika virus isolate ZIKV/Human/USA/2016/ZF10.UR-010 polyprotein gene, complete cds 18489 18489 100% 0.0 99% KX842449.1 Select seq gb|KX832731.1| Zika virus isolate ZIKV/Human/USA/2016/ZL2.SA-Hu0015 polyprotein gene, complete cds 18480 18480 100% 0.0 99% KX832731.1 Select seq gb|KX838905.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM2-7719 polyprotein gene, complete cds 18474 18474 100% 0.0 99% KX838905.1 Select seq gb|KX838904.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM1-7501 polyprotein gene, complete cds 18471 18471 100% 0.0 99% KX838904.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 18444 18444 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 18442 18442 100% 0.0 99% KU853012.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 18411 18411 100% 0.0 99% KX673530.1 Select seq gb|KX838906.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM3-7729 polyprotein gene, complete cds 18402 18402 100% 0.0 99% KX838906.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 18363 18363 100% 0.0 99% KX447510.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 18357 18357 100% 0.0 99% KX280026.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 18354 18354 100% 0.0 99% KX447512.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 18354 18354 100% 0.0 99% KX369547.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 18354 18354 100% 0.0 99% KU509998.3 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 18348 18348 100% 0.0 99% KJ776791.2 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 18348 18348 100% 0.0 99% KX447509.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 18348 18348 100% 0.0 99% KU991811.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 18348 18348 100% 0.0 99% KU729217.2 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 18345 18345 100% 0.0 99% KX447513.1 Select seq gb|KX811222.1| Zika virus isolate Brazil_2015_MG, complete genome 18339 18339 100% 0.0 99% KX811222.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 18339 18339 100% 0.0 99% KX197205.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 18339 18339 100% 0.0 99% KX447515.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 18339 18339 100% 0.0 99% KX447511.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 18339 18339 100% 0.0 99% KU707826.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 18339 18339 100% 0.0 99% KU365779.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 18339 18339 100% 0.0 99% KU321639.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 18336 18336 100% 0.0 99% KX447514.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 18336 18336 100% 0.0 99% KX262887.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 18336 18336 100% 0.0 99% KX051563.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 18336 18336 100% 0.0 99% KU926309.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 18330 18330 100% 0.0 99% KX447516.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 18330 18330 100% 0.0 99% KU729218.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 18330 18330 100% 0.0 99% KU527068.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 18327 18327 100% 0.0 99% KX694534.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 18327 18327 100% 0.0 99% KX197192.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 18327 18327 100% 0.0 99% KU926310.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 18327 18327 100% 0.0 99% KU501217.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 18327 18327 100% 0.0 99% KU365780.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 18321 18321 100% 0.0 99% KU940228.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 18321 18321 100% 0.0 99% KU501216.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 18321 18321 100% 0.0 99% KU365777.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 18318 18318 100% 0.0 99% KU758877.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 18318 18318 100% 0.0 99% KX198135.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 18312 18312 100% 0.0 99% KU647676.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 18309 18309 100% 0.0 99% KX447517.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 18309 18309 100% 0.0 99% KX247646.1 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 18309 18309 100% 0.0 99% KX247632.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 18309 18309 100% 0.0 99% KX156776.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 18309 18309 100% 0.0 99% KU365778.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 18309 18309 100% 0.0 99% KU312312.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 18305 18305 99% 0.0 99% KU497555.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 18303 18303 100% 0.0 99% KX520666.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 18303 18303 100% 0.0 99% KX156774.1 Select seq gb|KX856011.1| Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome 18300 18300 100% 0.0 99% KX856011.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 18300 18300 100% 0.0 99% KU820897.5 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 18300 18300 100% 0.0 99% KX446951.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 18300 18300 100% 0.0 99% KU937936.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 18300 18300 100% 0.0 99% KX156775.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 18300 18300 100% 0.0 99% KX087102.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 18300 18300 100% 0.0 99% KU501215.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 18294 18294 100% 0.0 99% KX601168.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 18294 18294 100% 0.0 99% KX446950.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 18294 18294 100% 0.0 99% KX087101.2 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 18294 18294 100% 0.0 99% KU870645.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 18294 18294 100% 0.0 99% KU922960.1 Select seq gb|KX806557.1| Zika virus isolate TS17-2016, complete genome 18291 18291 100% 0.0 99% KX806557.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 18291 18291 100% 0.0 99% KX548902.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 18291 18291 100% 0.0 99% KX377337.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 18291 18291 100% 0.0 99% KU922923.1 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 18282 18282 100% 0.0 99% KX766029.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 18282 18282 100% 0.0 99% KX702400.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 18282 18282 100% 0.0 99% KU820898.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 18276 18276 100% 0.0 99% KX056898.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 18276 18276 100% 0.0 99% KU955590.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 18274 18274 100% 0.0 99% KX766028.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 18273 18273 100% 0.0 99% KU740184.2 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 18273 18273 100% 0.0 99% KU761564.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 18258 18258 100% 0.0 99% KX117076.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 18249 18249 100% 0.0 99% KX185891.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 18249 18249 100% 0.0 99% KU963796.1 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 18245 18245 100% 0.0 99% KX253996.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 18245 18245 100% 0.0 99% KU955589.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 18245 18245 100% 0.0 99% KU820899.2 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 18242 18242 100% 0.0 99% KX266255.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 18240 18240 100% 0.0 99% KU866423.2 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 18227 18227 99% 0.0 99% KU940224.1 Select seq gb|KU744693.1| Zika virus isolate VE_Ganxian, complete genome 18114 18114 100% 0.0 99% KU744693.1 Select seq gb|KX827309.1| Zika virus isolate ZKA-16-291 polyprotein gene, complete cds 18083 18083 100% 0.0 99% KX827309.1 Select seq gb|KX813683.1| Zika virus isolate ZKA-16-097 polyprotein gene, complete cds 18069 18069 100% 0.0 99% KX813683.1 Select seq gb|KU681081.3| Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome 18015 18015 100% 0.0 99% KU681081.3 Select seq gb|KX694532.1| Zika virus strain ZIKV/Homo sapiens/THA/PLCal_ZV/2013, complete genome 17894 17894 100% 0.0 99% KX694532.1 Select seq gb|KU955593.1| Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome 17708 17708 100% 0.0 98% KU955593.1 Select seq gb|JN860885.1| Zika virus isolate FSS13025 polyprotein gene, partial cds 17708 17708 99% 0.0 98% JN860885.1 Select seq gb|KF993678.1| Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds 17661 17661 98% 0.0 99% KF993678.1 Select seq gb|EU545988.1| Zika virus polyprotein gene, complete cds 17553 17553 100% 0.0 98% EU545988.1 Select seq gb|KU681082.3| Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome 17407 17407 100% 0.0 98% KU681082.3 Select seq gb|KX601167.1| Zika virus strain ZIKV/Aedes sp./MYS/P6-740/1966, complete genome 16379 16379 100% 0.0 95% KX601167.1 Select seq gb|KX694533.1| Zika virus strain ZIKV/Aedes aegypti/MYS/P6-740/1966, complete genome 16370 16370 100% 0.0 95% KX694533.1 Select seq gb|HQ234499.1| Zika virus isolate P6-740 polyprotein gene, partial cds 16370 16370 99% 0.0 95% HQ234499.1 Select seq gb|KX377336.1| Zika virus strain P6-740, complete genome 16365 16365 100% 0.0 95% KX377336.1 Select seq gb|KX447518.1| Zika virus isolate 1_0117_PF polyprotein gene, partial cds 16199 16199 88% 0.0 99% KX447518.1 Link to comment Share on other sites More sharing options...
niman Posted September 24, 2016 Author Report Share Posted September 24, 2016 ZF36_36S|XX|2016-08-04 matches Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KX842449.1| Zika virus isolate ZIKV/Human/USA/2016/ZF10.UR-010 polyprotein gene, complete cds 15086 17263 94% 0.0 99% KX842449.1 Select seq gb|KX832731.1| Zika virus isolate ZIKV/Human/USA/2016/ZL2.SA-Hu0015 polyprotein gene, complete cds 15081 17257 94% 0.0 99% KX832731.1 Select seq gb|KX838905.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM2-7719 polyprotein gene, complete cds 15077 17254 94% 0.0 99% KX838905.1 Select seq gb|KX838904.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM1-7501 polyprotein gene, complete cds 15072 17243 94% 0.0 99% KX838904.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 15046 17220 94% 0.0 99% KU853012.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 15044 17221 94% 0.0 99% KU853013.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 15017 17189 94% 0.0 99% KX673530.1 Select seq gb|KX838906.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM3-7729 polyprotein gene, complete cds 15005 17182 94% 0.0 99% KX838906.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 14987 17160 94% 0.0 99% KX447510.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 14987 17169 94% 0.0 99% KX280026.1 Select seq gb|KX811222.1| Zika virus isolate Brazil_2015_MG, complete genome 14978 17151 94% 0.0 99% KX811222.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 14978 17155 94% 0.0 99% KX369547.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 14972 17149 94% 0.0 99% KX447512.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 14972 17149 94% 0.0 99% KU509998.3 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 14969 17146 94% 0.0 99% KX197205.1 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 14969 17146 94% 0.0 99% KJ776791.2 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 14969 17151 94% 0.0 99% KU991811.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 14969 17142 94% 0.0 99% KU321639.1 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 14963 17146 94% 0.0 99% KX447509.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 14963 17126 94% 0.0 99% KX198135.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 14963 17128 94% 0.0 99% KU729218.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 14960 17137 94% 0.0 99% KX447515.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 14960 17142 94% 0.0 99% KX447513.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 14954 17137 94% 0.0 99% KX447516.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 14954 17137 94% 0.0 99% KX447511.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 14954 17128 94% 0.0 99% KX197192.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 14954 17126 94% 0.0 99% KU926309.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 14954 17137 94% 0.0 99% KU729217.2 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 14954 17122 94% 0.0 99% KU647676.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 14951 17133 94% 0.0 99% KX447514.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 14951 17115 94% 0.0 99% KX156776.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 14951 17133 94% 0.0 99% KX051563.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 14951 17128 94% 0.0 99% KU940228.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 14951 17128 94% 0.0 99% KU707826.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 14951 17128 94% 0.0 99% KU365779.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 14945 17104 94% 0.0 99% KX156775.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 14945 17110 94% 0.0 99% KX156774.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 14942 17124 94% 0.0 99% KX262887.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 14942 17115 94% 0.0 99% KX247646.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 14942 17119 94% 0.0 99% KU926310.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 14942 17106 94% 0.0 99% KU497555.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 14942 17119 94% 0.0 99% KU527068.1 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 14938 17032 94% 0.0 99% KU940224.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 14936 17104 94% 0.0 99% KU820897.5 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 14936 17104 94% 0.0 99% KX447517.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 14936 17113 94% 0.0 99% KX520666.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 14936 17104 94% 0.0 99% KX087102.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 14936 17104 94% 0.0 99% KU922960.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 14936 17104 94% 0.0 99% KU922923.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 14936 17119 94% 0.0 99% KU365780.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 14936 17113 94% 0.0 99% KU365777.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 14933 17115 94% 0.0 99% KX694534.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 14933 17097 94% 0.0 99% KX548902.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 14933 17115 94% 0.0 99% KU501217.1 Select seq gb|KX806557.1| Zika virus isolate TS17-2016, complete genome 14927 17099 94% 0.0 99% KX806557.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 14927 17104 94% 0.0 99% KU758877.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 14927 17110 94% 0.0 99% KU501216.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 14927 17104 94% 0.0 99% KU365778.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 14924 17088 94% 0.0 99% KX702400.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 14924 17101 94% 0.0 99% KU312312.1 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 14918 17092 94% 0.0 99% KU870645.1 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 14915 17097 94% 0.0 99% KX247632.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 14915 17088 94% 0.0 99% KU501215.1 Select seq gb|KX856011.1| Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome 14909 17092 94% 0.0 99% KX856011.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 14909 17083 94% 0.0 99% KX601168.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 14909 17092 94% 0.0 99% KX446951.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 14909 17086 94% 0.0 99% KX446950.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 14909 17083 94% 0.0 99% KX087101.2 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 14906 17079 94% 0.0 99% KX377337.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 14906 17088 94% 0.0 99% KU937936.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 14906 17068 94% 0.0 99% KX117076.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 14906 17079 94% 0.0 99% KU820898.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 14900 17063 94% 0.0 99% KX185891.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 14900 17063 94% 0.0 99% KU963796.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 14900 17068 94% 0.0 99% KU955590.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 14900 17068 94% 0.0 99% KU740184.2 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 14900 17068 94% 0.0 99% KU761564.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 14898 17066 94% 0.0 99% KX766028.1 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 14897 17059 94% 0.0 99% KX253996.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 14897 17068 94% 0.0 99% KX056898.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 14897 17059 94% 0.0 99% KU955589.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 14897 17059 94% 0.0 99% KU820899.2 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 14893 17055 94% 0.0 99% KX266255.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 14891 17054 94% 0.0 99% KU866423.2 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 14888 17070 94% 0.0 99% KX766029.1 Select seq gb|KX827309.1| Zika virus isolate ZKA-16-291 polyprotein gene, complete cds 14770 16917 94% 0.0 98% KX827309.1 Select seq gb|KU744693.1| Zika virus isolate VE_Ganxian, complete genome 14765 16915 94% 0.0 98% KU744693.1 Select seq gb|KX813683.1| Zika virus isolate ZKA-16-097 polyprotein gene, complete cds 14756 16902 94% 0.0 98% KX813683.1 Select seq gb|KU681081.3| Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome 14693 16828 94% 0.0 98% KU681081.3 Select seq gb|KX694532.1| Zika virus strain ZIKV/Homo sapiens/THA/PLCal_ZV/2013, complete genome 14630 16744 94% 0.0 98% KX694532.1 Select seq gb|KF993678.1| Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds 14630 16513 93% 0.0 98% KF993678.1 Select seq gb|JN860885.1| Zika virus isolate FSS13025 polyprotein gene, partial cds 14496 16585 94% 0.0 98% JN860885.1 Select seq gb|KU955593.1| Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome 14494 16585 94% 0.0 98% KU955593.1 Select seq gb|KX447518.1| Zika virus isolate 1_0117_PF polyprotein gene, partial cds 14412 15682 86% 0.0 99% KX447518.1 Select seq gb|EU545988.1| Zika virus polyprotein gene, complete cds 14372 16444 94% 0.0 97% EU545988.1 Select seq gb|KU681082.3| Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome 14278 16316 94% 0.0 97% KU681082.3 Select seq gb|KX601167.1| Zika virus strain ZIKV/Aedes sp./MYS/P6-740/1966, complete genome 13367 15346 94% 0.0 95% KX601167.1 Select seq gb|KX694533.1| Zika virus strain ZIKV/Aedes aegypti/MYS/P6-740/1966, complete genome 13364 15337 94% 0.0 95% KX694533.1 Select seq gb|KX377336.1| Zika virus strain P6-740, complete genome 13364 15337 94% 0.0 95% KX377336.1 Select seq gb|KX447520.1| Zika virus isolate 1_0016_PF polyprotein gene, partial cds 9714 14998 83% 0.0 98% KX447520.1 Link to comment Share on other sites More sharing options...
niman Posted September 24, 2016 Author Report Share Posted September 24, 2016 ZF39_39U|XX|2016-08-17 matches Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 18465 18465 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 18465 18465 100% 0.0 99% KU853012.1 Select seq gb|KX842449.1| Zika virus isolate ZIKV/Human/USA/2016/ZF10.UR-010 polyprotein gene, complete cds 18429 18429 100% 0.0 99% KX842449.1 Select seq gb|KX838905.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM2-7719 polyprotein gene, complete cds 18426 18426 100% 0.0 99% KX838905.1 Select seq gb|KX838904.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM1-7501 polyprotein gene, complete cds 18420 18420 100% 0.0 99% KX838904.1 Select seq gb|KX832731.1| Zika virus isolate ZIKV/Human/USA/2016/ZL2.SA-Hu0015 polyprotein gene, complete cds 18420 18420 100% 0.0 99% KX832731.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 18417 18417 100% 0.0 99% KX673530.1 Select seq gb|KX838906.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM3-7729 polyprotein gene, complete cds 18408 18408 100% 0.0 99% KX838906.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 18357 18357 100% 0.0 99% KX447510.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 18354 18354 100% 0.0 99% KX280026.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 18348 18348 100% 0.0 99% KX447512.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 18348 18348 100% 0.0 99% KX369547.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 18348 18348 100% 0.0 99% KU509998.3 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 18345 18345 100% 0.0 99% KJ776791.2 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 18345 18345 100% 0.0 99% KX447509.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 18345 18345 100% 0.0 99% KU991811.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 18345 18345 100% 0.0 99% KU729217.2 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 18339 18339 100% 0.0 99% KX447513.1 Select seq gb|KX811222.1| Zika virus isolate Brazil_2015_MG, complete genome 18336 18336 100% 0.0 99% KX811222.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 18336 18336 100% 0.0 99% KX197205.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 18336 18336 100% 0.0 99% KX447515.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 18336 18336 100% 0.0 99% KX447511.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 18336 18336 100% 0.0 99% KU707826.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 18336 18336 100% 0.0 99% KU365779.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 18336 18336 100% 0.0 99% KU321639.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 18330 18330 100% 0.0 99% KX447514.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 18330 18330 100% 0.0 99% KX262887.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 18330 18330 100% 0.0 99% KX051563.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 18330 18330 100% 0.0 99% KU926309.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 18330 18330 100% 0.0 99% KU501217.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 18327 18327 100% 0.0 99% KX447516.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 18327 18327 100% 0.0 99% KU729218.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 18327 18327 100% 0.0 99% KU527068.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 18327 18327 100% 0.0 99% KU501216.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 18321 18321 100% 0.0 99% KX694534.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 18321 18321 100% 0.0 99% KX197192.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 18321 18321 100% 0.0 99% KU926310.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 18321 18321 100% 0.0 99% KU365780.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 18318 18318 100% 0.0 99% KU940228.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 18318 18318 100% 0.0 99% KU365777.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 18312 18312 100% 0.0 99% KU758877.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 18312 18312 100% 0.0 99% KX198135.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 18309 18309 100% 0.0 99% KU647676.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 18303 18303 100% 0.0 99% KX447517.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 18303 18303 100% 0.0 99% KX247646.1 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 18303 18303 100% 0.0 99% KX247632.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 18303 18303 100% 0.0 99% KX156776.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 18303 18303 100% 0.0 99% KU365778.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 18303 18303 100% 0.0 99% KU312312.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 18300 18300 100% 0.0 99% KX520666.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 18300 18300 100% 0.0 99% KX156774.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 18300 18300 99% 0.0 99% KU497555.1 Select seq gb|KX856011.1| Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome 18294 18294 100% 0.0 99% KX856011.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 18294 18294 100% 0.0 99% KU820897.5 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 18294 18294 100% 0.0 99% KX446951.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 18294 18294 100% 0.0 99% KU937936.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 18294 18294 100% 0.0 99% KX156775.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 18294 18294 100% 0.0 99% KX087102.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 18294 18294 100% 0.0 99% KU501215.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 18291 18291 100% 0.0 99% KX601168.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 18291 18291 100% 0.0 99% KX446950.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 18291 18291 100% 0.0 99% KX087101.2 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 18291 18291 100% 0.0 99% KU870645.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 18291 18291 100% 0.0 99% KU922960.1 Select seq gb|KX806557.1| Zika virus isolate TS17-2016, complete genome 18285 18285 100% 0.0 99% KX806557.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 18285 18285 100% 0.0 99% KX548902.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 18285 18285 100% 0.0 99% KX377337.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 18285 18285 100% 0.0 99% KU922923.1 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 18276 18276 100% 0.0 99% KX766029.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 18276 18276 100% 0.0 99% KX702400.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 18276 18276 100% 0.0 99% KU820898.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 18273 18273 100% 0.0 99% KX056898.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 18273 18273 100% 0.0 99% KU955590.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 18269 18269 100% 0.0 99% KX766028.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 18267 18267 100% 0.0 99% KU740184.2 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 18267 18267 100% 0.0 99% KU761564.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 18254 18254 100% 0.0 99% KX117076.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 18245 18245 100% 0.0 99% KX185891.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 18245 18245 100% 0.0 99% KU963796.1 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 18240 18240 100% 0.0 99% KX253996.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 18240 18240 100% 0.0 99% KU955589.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 18240 18240 100% 0.0 99% KU820899.2 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 18236 18236 100% 0.0 99% KX266255.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 18236 18236 100% 0.0 99% KU866423.2 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 18222 18222 99% 0.0 99% KU940224.1 Select seq gb|KU744693.1| Zika virus isolate VE_Ganxian, complete genome 18110 18110 100% 0.0 99% KU744693.1 Select seq gb|KX827309.1| Zika virus isolate ZKA-16-291 polyprotein gene, complete cds 18078 18078 100% 0.0 99% KX827309.1 Select seq gb|KX813683.1| Zika virus isolate ZKA-16-097 polyprotein gene, complete cds 18065 18065 100% 0.0 99% KX813683.1 Select seq gb|KU681081.3| Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome 18011 18011 100% 0.0 99% KU681081.3 Select seq gb|KX694532.1| Zika virus strain ZIKV/Homo sapiens/THA/PLCal_ZV/2013, complete genome 17897 17897 100% 0.0 99% KX694532.1 Select seq gb|KU955593.1| Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome 17704 17704 100% 0.0 98% KU955593.1 Select seq gb|JN860885.1| Zika virus isolate FSS13025 polyprotein gene, partial cds 17703 17703 99% 0.0 98% JN860885.1 Select seq gb|KF993678.1| Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds 17667 17667 98% 0.0 99% KF993678.1 Select seq gb|EU545988.1| Zika virus polyprotein gene, complete cds 17558 17558 100% 0.0 98% EU545988.1 Select seq gb|KU681082.3| Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome 17411 17411 100% 0.0 98% KU681082.3 Select seq gb|KX601167.1| Zika virus strain ZIKV/Aedes sp./MYS/P6-740/1966, complete genome 16401 16401 100% 0.0 95% KX601167.1 Select seq gb|HQ234499.1| Zika virus isolate P6-740 polyprotein gene, partial cds 16393 16393 99% 0.0 95% HQ234499.1 Select seq gb|KX694533.1| Zika virus strain ZIKV/Aedes aegypti/MYS/P6-740/1966, complete genome 16392 16392 100% 0.0 95% KX694533.1 Select seq gb|KX377336.1| Zika virus strain P6-740, complete genome 16388 16388 100% 0.0 95% KX377336.1 Select seq gb|KX447518.1| Zika virus isolate 1_0117_PF polyprotein gene, partial cds 16199 16199 88% 0.0 99% KX447518.1 Link to comment Share on other sites More sharing options...
niman Posted September 29, 2016 Author Report Share Posted September 29, 2016 Update of recent sequences and cases http://recombinomics.co/thedrnimanshow/2016/09/092816.mp3 Link to comment Share on other sites More sharing options...
niman Posted September 30, 2016 Author Report Share Posted September 30, 2016 Env tree Link to comment Share on other sites More sharing options...
niman Posted October 3, 2016 Author Report Share Posted October 3, 2016 Annotated full sequences Link to comment Share on other sites More sharing options...
niman Posted October 3, 2016 Author Report Share Posted October 3, 2016 Annotated ENV sequences Link to comment Share on other sites More sharing options...
niman Posted October 7, 2016 Author Report Share Posted October 7, 2016 1. Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds 10,365 bp linear RNA Accession: KX922703.1 GI: 1071930510 GenBankFASTAGraphics Select item 10719305122. Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds 10,609 bp linear RNA Accession: KX922704.1 GI: 1071930512 GenBankFASTAGraphics Select item 10719305143. Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds 10,609 bp linear RNA Accession: KX922705.1 GI: 1071930514 GenBankFASTAGraphics Select item 10719305164. Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds 10,610 bp linear RNA Accession: KX922706.1 GI: 1071930516 GenBankFASTAGraphics Select item 10719305185. Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds 10,609 bp linear RNA Accession: KX922707.1 GI: 1071930518 GenBankFASTAGraphics Select item 10719305206. Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds 10,606 bp linear RNA Accession: KX922708.1 GI: 1071930520 GenBankFASTAGraphics Link to comment Share on other sites More sharing options...
niman Posted October 14, 2016 Author Report Share Posted October 14, 2016 updated ZF36 sequence (from serum) ZF36_36S_2016-08-04 matches Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KX842449.2| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds 15090 17266 94% 0.0 99% KX842449.2 Select seq gb|KX922703.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds 15081 17257 94% 0.0 99% KX922703.1 Select seq gb|KX838905.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds 15081 17257 94% 0.0 99% KX838905.2 Select seq gb|KX832731.1| Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds 15081 17257 94% 0.0 99% KX832731.1 Select seq gb|KX922704.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds 15077 17254 94% 0.0 99% KX922704.1 Select seq gb|KX922706.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds 15073 17250 94% 0.0 99% KX922706.1 Select seq gb|KX838904.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds 15073 17245 94% 0.0 99% KX838904.2 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 15046 17220 94% 0.0 99% KU853012.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 15044 17221 94% 0.0 99% KU853013.1 Select seq gb|KX922707.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds 15017 17198 94% 0.0 99% KX922707.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 15017 17189 94% 0.0 99% KX673530.1 Select seq gb|KX838906.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds 15008 17185 94% 0.0 99% KX838906.2 Select seq gb|KX922705.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds 14998 17175 94% 0.0 99% KX922705.1 Select seq gb|KX922708.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds 14996 17167 94% 0.0 99% KX922708.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 14987 17160 94% 0.0 99% KX447510.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 14987 17169 94% 0.0 99% KX280026.1 Select seq gb|KX811222.1| Zika virus isolate Brazil_2015_MG, complete genome 14978 17151 94% 0.0 99% KX811222.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 14978 17155 94% 0.0 99% KX369547.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 14972 17149 94% 0.0 99% KX447512.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 14972 17149 94% 0.0 99% KU509998.3 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 14969 17146 94% 0.0 99% KX197205.1 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 14969 17146 94% 0.0 99% KJ776791.2 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 14969 17151 94% 0.0 99% KU991811.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 14969 17142 94% 0.0 99% KU321639.1 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 14963 17146 94% 0.0 99% KX447509.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 14963 17126 94% 0.0 99% KX198135.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 14963 17128 94% 0.0 99% KU729218.1 Select seq gb|KX879604.1| Zika virus isolate SN089, complete genome 14960 17137 94% 0.0 99% KX879604.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 14960 17137 94% 0.0 99% KX447515.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 14960 17142 94% 0.0 99% KX447513.1 Select seq gb|KX879603.1| Zika virus isolate SN062, complete genome 14954 17128 94% 0.0 99% KX879603.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 14954 17137 94% 0.0 99% KX447516.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 14954 17137 94% 0.0 99% KX447511.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 14954 17128 94% 0.0 99% KX197192.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 14954 17126 94% 0.0 99% KU926309.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 14954 17137 94% 0.0 99% KU729217.2 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 14954 17122 94% 0.0 99% KU647676.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 14951 17133 94% 0.0 99% KX447514.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 14951 17115 94% 0.0 99% KX156776.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 14951 17133 94% 0.0 99% KX051563.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 14951 17128 94% 0.0 99% KU940228.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 14951 17128 94% 0.0 99% KU707826.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 14951 17128 94% 0.0 99% KU365779.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 14945 17104 94% 0.0 99% KX156775.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 14945 17110 94% 0.0 99% KX156774.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 14942 17124 94% 0.0 99% KX262887.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 14942 17115 94% 0.0 99% KX247646.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 14942 17119 94% 0.0 99% KU926310.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 14942 17106 94% 0.0 99% KU497555.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 14942 17119 94% 0.0 99% KU527068.1 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 14938 17032 94% 0.0 99% KU940224.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 14936 17104 94% 0.0 99% KU820897.5 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 14936 17104 94% 0.0 99% KX447517.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 14936 17113 94% 0.0 99% KX520666.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 14936 17104 94% 0.0 99% KX087102.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 14936 17104 94% 0.0 99% KU922960.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 14936 17104 94% 0.0 99% KU922923.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 14936 17119 94% 0.0 99% KU365780.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 14936 17113 94% 0.0 99% KU365777.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 14933 17115 94% 0.0 99% KX694534.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 14933 17097 94% 0.0 99% KX548902.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 14933 17115 94% 0.0 99% KU501217.1 Select seq gb|KX806557.1| Zika virus isolate TS17-2016, complete genome 14927 17099 94% 0.0 99% KX806557.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 14927 17104 94% 0.0 99% KU758877.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 14927 17110 94% 0.0 99% KU501216.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 14927 17104 94% 0.0 99% KU365778.1 Select seq gb|KX893855.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-2/2016, complete genome 14925 17092 94% 0.0 99% KX893855.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 14924 17088 94% 0.0 99% KX702400.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 14924 17101 94% 0.0 99% KU312312.1 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 14918 17092 94% 0.0 99% KU870645.1 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 14915 17097 94% 0.0 99% KX247632.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 14915 17088 94% 0.0 99% KU501215.1 Select seq gb|KX856011.1| Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome 14909 17092 94% 0.0 99% KX856011.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 14909 17083 94% 0.0 99% KX601168.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 14909 17092 94% 0.0 99% KX446951.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 14909 17086 94% 0.0 99% KX446950.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 14909 17083 94% 0.0 99% KX087101.2 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 14906 17079 94% 0.0 99% KX377337.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 14906 17088 94% 0.0 99% KU937936.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 14906 17068 94% 0.0 99% KX117076.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 14906 17079 94% 0.0 99% KU820898.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 14900 17063 94% 0.0 99% KX185891.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 14900 17063 94% 0.0 99% KU963796.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 14900 17068 94% 0.0 99% KU955590.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 14900 17068 94% 0.0 99% KU740184.2 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 14900 17068 94% 0.0 99% KU761564.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 14898 17066 94% 0.0 99% KX766028.1 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 14897 17059 94% 0.0 99% KX253996.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 14897 17068 94% 0.0 99% KX056898.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 14897 17059 94% 0.0 99% KU955589.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 14897 17059 94% 0.0 99% KU820899.2 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 14893 17055 94% 0.0 99% KX266255.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 14891 17054 94% 0.0 99% KU866423.2 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 14888 17070 94% 0.0 99% KX766029.1 Select seq gb|KX827309.1| Zika virus isolate ZKA-16-291 polyprotein gene, complete cds 14770 16917 94% 0.0 98% KX827309.1 Select seq gb|KU744693.1| Zika virus isolate VE_Ganxian, complete genome 14765 16915 94% 0.0 98% KU744693.1 Select seq gb|KX813683.1| Zika virus isolate ZKA-16-097 polyprotein gene, complete cds 14756 16902 94% 0.0 98% KX813683.1 Select seq gb|KU681081.3| Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome 14693 16828 94% 0.0 98% KU681081.3 Select seq gb|KX694532.1| Zika virus strain ZIKV/Homo sapiens/THA/PLCal_ZV/2013, complete genome 14630 16744 94% 0.0 98% KX694532.1 Select seq gb|KF993678.1| Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds 14630 16513 93% 0.0 98% KF993678.1 Select seq gb|JN860885.1| Zika virus isolate FSS13025 polyprotein gene, partial cds 14496 16585 94% 0.0 98% JN860885.1 Select seq gb|KU955593.1| Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome 14494 16585 94% 0.0 98% KU955593.1 Select seq gb|KX447518.1| Zika virus isolate 1_0117_PF polyprotein gene, partial cds 14412 15682 86% 0.0 99% KX447518.1 Select seq gb|EU545988.1| Zika virus polyprotein gene, complete cds 14372 16444 94% 0.0 97% EU545988.1 Select seq gb|KU681082.3| Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome 14278 16316 94% 0.0 97% KU681082.3 Select seq gb|KX601167.1| Zika virus strain ZIKV/Aedes sp./MYS/P6-740/1966, complete genome 13367 15346 94% 0.0 95% KX601167.1 Select seq gb|KX694533.1| Zika virus strain ZIKV/Aedes aegypti/MYS/P6-740/1966, complete genome 13364 15337 94% 0.0 95% KX694533.1 Select seq gb|KX377336.1| Zika virus strain P6-740, complete genome 13364 15337 94% 0.0 95% KX377336.1 Select seq gb|HQ234499.1| Zika virus isolate P6-740 polyprotein gene, partial cds 13362 15339 94% 0.0 95% HQ234499.1 Select seq gb|KF383115.1| Zika virus strain ArB1362 polyprotein gene, complete cds 10776 12432 94% 0.0 88% KF383115.1 Select seq gb|KF268948.1| Zika virus isolate ARB13565 polyprotein gene, complete cds 10761 12421 94% 0.0 88% KF268948.1 Select seq gb|KF268950.1| Zika virus isolate ARB7701 polyprotein gene, complete cds 10754 12414 94% 0.0 88% KF268950.1 Select seq gb|KX830960.1| Zika virus culture ATCC:VR-84 isolate MR776, complete genome 10749 12439 94% 0.0 88% KX830960.1 Select seq gb|KU720415.1| Zika virus strain MR 766 polyprotein gene, complete cds 10749 12439 94% 0.0 88% KU720415.1 Select seq gb|HQ234498.1| Zika virus isolate MR_766 polyprotein gene, partial cds 10749 12433 94% 0.0 88% HQ234498.1 Select seq gb|KX576684.1| Zika virus vector pZIKV-ICD, complete sequence 10740 17173 94% 0.0 99% KX576684.1 Link to comment Share on other sites More sharing options...
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