niman Posted September 25, 2016 Report Share Posted September 25, 2016 Vector has released a partial Zika sequence exported to Russia from Goa, India. Sequence shows obvious recombination between older Asian sequences and those from the Americas. Link to comment Share on other sites More sharing options...
niman Posted September 25, 2016 Author Report Share Posted September 25, 2016 LOCUS KX867786 1308 bp RNA linear VRL 21-SEP-2016 DEFINITION Zika virus isolate D304 polyprotein gene, partial cds. ACCESSION KX867786 VERSION KX867786.1 GI:1069415456 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 1308) AUTHORS Chausov,E.V., Ternovoi,V.A., Plyasunova,I.V., Loktev,V.B., Pyankov,O.V., Agafonov,A.P., Maksiytov,R.A. and Popova,A.Y. TITLE Imported cases of Zika fever in Russia JOURNAL Unpublished REFERENCE 2 (bases 1 to 1308) AUTHORS Chausov,E.V., Ternovoi,V.A., Plyasunova,I.V., Loktev,V.B., Pyankov,O.V., Agafonov,A.P., Maksiytov,R.A. and Popova,A.Y. TITLE Direct Submission JOURNAL Submitted (17-SEP-2016) Head of Molecular Diagnostic Sector, Src Vb Vector, Koltsovo, Koltsovo, Novosibirsk Region 630559, Russia COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1308 /organism="Zika virus" /mol_type="genomic RNA" /isolate="D304" /isolation_source="blood" /host="Homo sapiens" /db_xref="taxon:64320" /country="Russia" /collection_date="30-May-2016" /note="imported from Goa, India" CDS <1..>1308 /codon_start=3 /product="polyprotein" /protein_id="AOR39541.1" /db_xref="GI:1069415457" /translation="VGLLLTTAMAVEVTRRGSAYYMYLDRSDAGEAISFPTTLGVNKC YIQIMDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSR RAVTLPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSST SQKVIYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPT VDIELVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVD RGWGNGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDT GHETDENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVH KEWFHDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVV" ORIGIN 1 ttgttggcct cctgctgacc acagccatgg cagtggaggt cactagacgt gggagtgcat 61 actatatgta cttggacaga agcgatgctg gggaggccat atcttttcca accacactgg 121 gggtgaataa gtgttacata cagatcatgg atcttggaca catgtgtgat gccacaatga 181 gctatgaatg ccctatgttg gatgaggggg tagaaccaga tgacgtcgat tgctggtgca 241 acacgacatc gacttgggtt gtgtacggaa cctgccatca caaaaaaggt gaagcacgga 301 gatctagaag agctgtgacg ctcccctccc attccactag gaagctgcaa acgcggtcgc 361 agacctggtt ggaatcaaga gaatacacaa agcacttgat cagagtcgag aattggatat 421 tcaggaaccc tggtttcgct ttagcagcag ctgccatcgc gtggcttttg ggaagctcaa 481 cgagccaaaa agtcatatac ttggtcatga tactgctgat tgccccggca tacagcatca 541 ggtgcatagg agtcagcaat agggactttg tggaaggtat gtcaggtggg acctgggttg 601 atgttgtctt ggaacatgga ggttgtgtta ccgtaatggc acaggacaaa ccgactgttg 661 acatagagct ggtcacaaca acggttagca acatggcgga ggtaagatcc tactgctacg 721 aggcatcaat atcggacatg gcttcggaca gccgctgccc aacacaaggt gaagcctacc 781 ttgacaagca gtcagacact caatatgttt gcaaaagaac gttagtggac agaggttggg 841 gaaatggatg tggacttttt ggcaaaggga gcctggtgac atgcgctaag tttgcatgct 901 ccaagaaaat gaccgggaag agcatccagc cagagaatct ggagtaccgg ataatgctgt 961 cagttcatgg ctcccagcac agtgggatga ttgttaatga cacaggacat gaaactgatg 1021 agaatagagc gaaggttgag ataacgccca attcaccaag agccgaagcc accctggggg 1081 gttttggaag cctaggactt gattgtgaac cgaggacagg ccttgacttt tcagatttgt 1141 attacttgac tatgaataac aagcactggt tggttcacaa ggagtggttc catgacattc 1201 cactaccttg gcatgctggg gcagacaccg gaactccaca ttggaacaac aaagaagcat 1261 tggtagagtt caaggacgca catgccaaaa ggcaaactgt cgtggttc Link to comment Share on other sites More sharing options...
niman Posted September 25, 2016 Author Report Share Posted September 25, 2016 Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KX867786.1| Zika virus isolate D304 polyprotein gene, partial cds 2360 2360 100% 0.0 100% KX867786.1 Select seq gb|KX601167.1| Zika virus strain ZIKV/Aedes sp./MYS/P6-740/1966, complete genome 2246 2246 100% 0.0 98% KX601167.1 Select seq gb|HQ234499.1| Zika virus isolate P6-740 polyprotein gene, partial cds 2242 2242 100% 0.0 98% HQ234499.1 Select seq gb|KX694533.1| Zika virus strain ZIKV/Aedes aegypti/MYS/P6-740/1966, complete genome 2237 2237 100% 0.0 98% KX694533.1 Select seq gb|KX377336.1| Zika virus strain P6-740, complete genome 2237 2237 100% 0.0 98% KX377336.1 Select seq gb|EU545988.1| Zika virus polyprotein gene, complete cds 2233 2233 100% 0.0 98% EU545988.1 Select seq gb|KX856011.1| Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome 2206 2206 100% 0.0 97% KX856011.1 Select seq gb|KX447521.1| Zika virus isolate 1_0080_PF polyprotein gene, partial cds 2206 2206 100% 0.0 97% KX447521.1 Select seq gb|KX447518.1| Zika virus isolate 1_0117_PF polyprotein gene, partial cds 2206 2206 100% 0.0 97% KX447518.1 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 2206 2206 100% 0.0 97% KX447509.1 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 2206 2206 100% 0.0 97% KX247632.1 Select seq gb|KU955593.1| Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome 2206 2206 100% 0.0 97% KU955593.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 2206 2206 100% 0.0 97% KU922960.1 Select seq gb|KU681081.3| Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome 2206 2206 100% 0.0 97% KU681081.3 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 2206 2206 100% 0.0 97% KU707826.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 2206 2206 100% 0.0 97% KU647676.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 2206 2206 100% 0.0 97% KU365779.1 Select seq gb|JN860885.1| Zika virus isolate FSS13025 polyprotein gene, partial cds 2206 2206 100% 0.0 97% JN860885.1 Select seq gb|KX813683.1| Zika virus isolate ZKA-16-097 polyprotein gene, complete cds 2201 2201 100% 0.0 97% KX813683.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 2201 2201 100% 0.0 97% KX197205.1 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 2201 2201 100% 0.0 97% KJ776791.2 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 2201 2201 100% 0.0 97% KX702400.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 2201 2201 100% 0.0 97% KX694534.1 Select seq gb|KX447520.1| Zika virus isolate 1_0016_PF polyprotein gene, partial cds 2201 2201 100% 0.0 97% KX447520.1 Select seq gb|KX447519.1| Zika virus isolate 1_0199_PF polyprotein gene, partial cds 2201 2201 100% 0.0 97% KX447519.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 2201 2201 100% 0.0 97% KX447515.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 2201 2201 100% 0.0 97% KX447514.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 2201 2201 100% 0.0 97% KX447513.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 2201 2201 100% 0.0 97% KX447510.1 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 2201 2201 100% 0.0 97% KX266255.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 2201 2201 100% 0.0 97% KX548902.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 2201 2201 100% 0.0 97% KX446951.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 2201 2201 100% 0.0 97% KU866423.2 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 2201 2201 100% 0.0 97% KX262887.1 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 2201 2201 100% 0.0 97% KX253996.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 2201 2201 100% 0.0 97% KX198135.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 2201 2201 100% 0.0 97% KX185891.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 2201 2201 100% 0.0 97% KX117076.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 2201 2201 100% 0.0 97% KU963796.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 2201 2201 100% 0.0 97% KU940228.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 2201 2201 100% 0.0 97% KU955589.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 2201 2201 100% 0.0 97% KU922923.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 2201 2201 100% 0.0 97% KU820899.2 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 2201 2201 100% 0.0 97% KU365780.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 2201 2201 100% 0.0 97% KU365777.1 Select seq gb|KX879604.1| Zika virus isolate SN089, complete genome 2197 2197 100% 0.0 97% KX879604.1 Select seq gb|KX879603.1| Zika virus isolate SN062, complete genome 2197 2197 100% 0.0 97% KX879603.1 Select seq gb|KX827309.1| Zika virus isolate ZKA-16-291 polyprotein gene, complete cds 2197 2197 100% 0.0 97% KX827309.1 Select seq gb|KX806557.1| Zika virus isolate TS17-2016, complete genome 2197 2197 100% 0.0 97% KX806557.1 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 2197 2197 100% 0.0 97% KX766029.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 2197 2197 100% 0.0 97% KX447516.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 2197 2197 100% 0.0 97% KX447512.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 2197 2197 100% 0.0 97% KX447511.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 2197 2197 100% 0.0 97% KX520666.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 2197 2197 100% 0.0 97% KX446950.1 Select seq gb|KU758876.1| Zika virus isolate 21068 polyprotein gene, partial cds 2197 2197 100% 0.0 97% KU758876.1 Select seq gb|KU758874.1| Zika virus isolate 20114 polyprotein gene, partial cds 2197 2197 100% 0.0 97% KU758874.1 Select seq gb|KU758871.1| Zika virus isolate 17170 polyprotein gene, partial cds 2197 2197 100% 0.0 97% KU758871.1 Select seq gb|KU758870.1| Zika virus isolate 17160 polyprotein gene, partial cds 2197 2197 100% 0.0 97% KU758870.1 Select seq gb|KU758869.1| Zika virus isolate 05211 polyprotein gene, partial cds 2197 2197 100% 0.0 97% KU758869.1 Select seq gb|KU758868.1| Zika virus isolate 27229 polyprotein gene, partial cds 2197 2197 100% 0.0 97% KU758868.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 2197 2197 100% 0.0 97% KX247646.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 2197 2197 100% 0.0 97% KU937936.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 2197 2197 100% 0.0 97% KX156776.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 2197 2197 100% 0.0 97% KX156774.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 2197 2197 100% 0.0 97% KX051563.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 2197 2197 100% 0.0 97% KU509998.3 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 2197 2197 100% 0.0 97% KU991811.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 2197 2197 100% 0.0 97% KU729218.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 2197 2197 100% 0.0 97% KU527068.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 2197 2197 100% 0.0 97% KU365778.1 Select seq gb|KU312314.1| Zika virus isolate Z1106031 polyprotein gene, partial cds 2197 2197 100% 0.0 97% KU312314.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 2194 2194 100% 0.0 97% KX766028.1 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 2194 2194 100% 0.0 97% KU940224.1 Select seq gb|KX838906.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM3-7729 polyprotein gene, complete cds 2192 2192 100% 0.0 97% KX838906.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 2192 2192 100% 0.0 97% KU820897.5 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 2192 2192 100% 0.0 97% KX673530.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 2192 2192 100% 0.0 97% KX447517.1 Select seq gb|KX576684.1| Zika virus vector pZIKV-ICD, complete sequence 2192 2192 100% 0.0 97% KX576684.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 2192 2192 100% 0.0 97% KX369547.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 2192 2192 100% 0.0 97% KU758877.1 Select seq gb|KU758873.1| Zika virus isolate 18246 polyprotein gene, partial cds 2192 2192 100% 0.0 97% KU758873.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 2192 2192 100% 0.0 97% KX280026.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 2192 2192 100% 0.0 97% KX197192.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 2192 2192 100% 0.0 97% KX156775.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 2192 2192 100% 0.0 97% KX087102.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 2192 2192 100% 0.0 97% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 2192 2192 100% 0.0 97% KU853012.1 Select seq gb|KU681082.3| Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome 2192 2192 100% 0.0 97% KU681082.3 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 2192 2192 100% 0.0 97% KU501217.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 2192 2192 100% 0.0 97% KU501216.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 2192 2192 100% 0.0 97% KU321639.1 Select seq gb|KX838904.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM1-7501 polyprotein gene, complete cds 2188 2188 100% 0.0 97% KX838904.1 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 2188 2188 100% 0.0 97% KU870645.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 2188 2188 100% 0.0 97% KU926310.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 2188 2188 99% 0.0 97% KU497555.1 Select seq gb|KX811222.1| Zika virus isolate Brazil_2015_MG, complete genome 2183 2183 100% 0.0 97% KX811222.1 Select seq gb|KX838905.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM2-7719 polyprotein gene, complete cds 2183 2183 100% 0.0 97% KX838905.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 2183 2183 100% 0.0 97% KX601168.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 2183 2183 100% 0.0 97% KX377337.1 Select seq gb|KU758872.1| Zika virus isolate 01170 polyprotein gene, partial cds 2183 2183 100% 0.0 97% KU758872.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 2183 2183 100% 0.0 97% KX087101.2 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 2183 2183 100% 0.0 97% KX056898.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 2183 2183 100% 0.0 97% KU955590.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 2183 2183 100% 0.0 97% KU926309.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 2183 2183 100% 0.0 97% KU820898.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 2183 2183 100% 0.0 97% KU740184.2 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 2183 2183 100% 0.0 97% KU729217.2 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 2183 2183 100% 0.0 97% KU761564.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 2183 2183 100% 0.0 97% KU501215.1 Select seq gb|KX842449.1| Zika virus isolate ZIKV/Human/USA/2016/ZF10.UR-010 polyprotein gene, complete cds 2179 2179 100% 0.0 97% KX842449.1 Select seq gb|KX694532.1| Zika virus strain ZIKV/Homo sapiens/THA/PLCal_ZV/2013, complete genome 2179 2179 100% 0.0 97% KX694532.1 Select seq gb|KU758875.1| Zika virus isolate 15042 polyprotein gene, partial cds 2179 2179 100% 0.0 97% KU758875.1 Select seq gb|KU744693.1| Zika virus isolate VE_Ganxian, complete genome 2179 2179 100% 0.0 97% KU744693.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 2179 2179 100% 0.0 97% KU312312.1 Select seq gb|KF993678.1| Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds 2179 2179 100% 0.0 97% KF993678.1 Select seq gb|KX832731.1| Zika virus isolate ZIKV/Human/USA/2016/ZL2.SA-Hu0015 polyprotein gene, complete cds 2174 2174 100% 0.0 97% KX832731.1 Select seq gb|KU312313.1| Zika virus isolate Z1106032 polyprotein gene, partial cds 2174 2174 100% 0.0 97% KU312313.1 Select seq gb|KX101060.1| Zika virus isolate Bahia02, partial genome 1784 2051 92% 0.0 98% KX101060.1 Select seq gb|KF268950.1| Zika virus isolate ARB7701 polyprotein gene, complete cds 1714 1714 99% 0.0 89% KF268950.1 Select seq gb|KF268948.1| Zika virus isolate ARB13565 polyprotein gene, complete cds 1714 1714 99% 0.0 89% KF268948.1 Select seq gb|KX830960.1| Zika virus culture ATCC:VR-84 isolate MR776, complete genome 1709 1709 99% 0.0 89% KX830960.1 Select seq gb|KU720415.1| Zika virus strain MR 766 polyprotein gene, complete cds 1709 1709 99% 0.0 89% KU720415.1 Select seq gb|HQ234498.1| Zika virus isolate MR_766 polyprotein gene, partial cds 1709 1709 99% 0.0 89% HQ234498.1 Select seq gb|KX830961.1| Synthetic construct, complete sequence 1705 1705 99% 0.0 89% KX830961.1 Select seq gb|KF383121.1| Zika virus strain ArD158095 polyprotein gene, partial cds 1705 1705 99% 0.0 89% KF383121.1 Select seq gb|KF383119.1| Zika virus strain ArD158084 polyprotein gene, complete cds 1705 1705 99% 0.0 89% KF383119.1 Select seq gb|KX377335.1| Zika virus strain MR-766, complete genome 1700 1700 99% 0.0 89% KX377335.1 Select seq dbj|LC002520.1| Zika virus genomic RNA, complete genome, strain: MR766-NIID 1696 1696 99% 0.0 89% LC002520.1 Select seq gb|DQ859059.1| Zika virus strain MR 766 polyprotein gene, complete cds 1685 1685 99% 0.0 88% DQ859059.1 Select seq gb|KU955595.1| Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome 1683 1683 99% 0.0 89% KU955595.1 Select seq gb|KF383115.1| Zika virus strain ArB1362 polyprotein gene, complete cds 1683 1683 99% 0.0 88% KF383115.1 Select seq gb|KX198134.1| Zika virus strain ZIKV/Aedes africanus/SEN/DAK-AR-41524_A1C1-V2/1984, complete genome 1680 1680 99% 0.0 89% KX198134.1 Select seq gb|KU955592.1| Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome 1680 1680 99% 0.0 89% KU955592.1 Select seq gb|KF383116.1| Zika virus strain ArD7117 polyprotein gene, complete cds 1680 1680 99% 0.0 89% KF383116.1 Select seq gb|KU955591.1| Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome 1674 1674 99% 0.0 88% KU955591.1 Select seq gb|HQ234501.1| Zika virus isolate ArD_41519 polyprotein gene, partial cds 1674 1674 99% 0.0 88% HQ234501.1 Select seq gb|KX601169.1| Zika virus strain ZIKV/Macaca mulatta/UGA/MR-766/1947, complete genome 1671 1671 99% 0.0 88% KX601169.1 Select seq gb|KU963573.1| Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds 1671 1671 99% 0.0 88% KU963573.1 Select seq gb|KF268949.1| Zika virus isolate ARB15076 polyprotein gene, complete cds 1667 1667 99% 0.0 88% KF268949.1 Select seq gb|KU955594.1| Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome 1665 1665 99% 0.0 88% KU955594.1 Select seq gb|AY632535.2| Zika virus strain MR 766, complete genome 1662 1662 99% 0.0 88% AY632535.2 Select seq gb|KF383117.1| Zika virus strain ArD128000 polyprotein gene, complete cds 1651 1651 99% 0.0 88% KF383117.1 Select seq gb|KX601166.1| Zika virus strain ZIKV/Aedes africanus/SEN/DakAr41524/1984, complete genome 1615 1615 99% 0.0 87% KX601166.1 Select seq gb|KU963574.1| Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds 1611 1611 99% 0.0 87% KU963574.1 Select seq gb|HQ234500.1| Zika virus isolate IbH_30656 polyprotein gene, partial cds 1611 1611 99% 0.0 87% HQ234500.1 Select seq gb|KF383118.1| Zika virus strain ArD157995 polyprotein gene, complete cds 1564 1564 99% 0.0 87% KF383118.1 Select seq gb|KF383120.1| Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence 1462 1462 99% 0.0 85% KF383120.1 Select seq gb|KX173841.1| Zika virus isolate 16Z11 envelope protein gene, partial cds 1371 1371 61% 0.0 98% KX173841.1 Select seq gb|KX173840.1| Zika virus isolate 16Z10 envelope protein gene, partial cds 1371 1371 61% 0.0 98% KX173840.1 Select seq gb|KU686218.1| Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds 1359 1359 64% 0.0 96% KU686218.1 Select seq gb|KU312315.1| Zika virus isolate Z1106027 polyprotein gene, partial cds 1330 1330 60% 0.0 98% KU312315.1 Select seq gb|KX216640.1| Zika virus isolate CKS63-2014 envelope protein gene, partial cds 1321 1321 59% 0.0 98% KX216640.1 Select seq gb|KX216635.1| Zika virus isolate TS17-2016 envelope protein gene, partial cds 1321 1321 59% 0.0 98% KX216635.1 Select seq gb|KX216634.1| Zika virus isolate TS14-2016 envelope protein gene, partial cds 1321 1321 59% 0.0 98% KX216634.1 Select seq gb|KJ634273.1| Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds 1321 1321 59% 0.0 98% KJ634273.1 Select seq gb|KX216637.1| Zika virus isolate GS29-2016 envelope protein gene, partial cds 1315 1315 59% 0.0 98% KX216637.1 Select seq gb|KX216636.1| Zika virus isolate SS27-2016 envelope protein gene, partial cds 1315 1315 59% 0.0 98% KX216636.1 Select seq gb|KX216632.1| Zika virus isolate SIS58-2015 envelope protein gene, partial cds 1315 1315 59% 0.0 98% KX216632.1 Select seq dbj|LC171327.1| Zika virus gene for polyprotein, partial cds, strain: ZIKV/Hu/Chiba/S36/2016 1315 1315 59% 0.0 98% LC171327.1 Select seq gb|KX380263.1| Zika virus isolate FS92-2016 envelope protein gene, partial cds 1312 1312 59% 0.0 98% KX380263.1 Select seq gb|KX216639.1| Zika virus isolate SS57-2016 envelope protein gene, partial cds 1312 1312 59% 0.0 98% KX216639.1 Select seq gb|KX216638.1| Zika virus isolate ESS23-2015 envelope protein gene, partial cds 1312 1312 59% 0.0 98% KX216638.1 Select seq gb|KX216633.1| Zika virus isolate VS51-2016 envelope protein gene, partial cds 1312 1312 59% 0.0 98% KX216633.1 Select seq gb|KU646828.1| Zika virus isolate Si322 polyprotein gene, partial cds 1312 1312 59% 0.0 98% KU646828.1 Select seq gb|KX380262.1| Zika virus isolate MS10-2016 envelope protein gene, partial cds 1306 1306 59% 0.0 98% KX380262.1 Select seq gb|KU646827.1| Zika virus isolate Si323 polyprotein gene, partial cds 1306 1306 59% 0.0 98% KU646827.1 Select seq gb|KX173843.1| Zika virus isolate 16Z62 envelope protein gene, partial cds 1229 1229 55% 0.0 98% KX173843.1 Select seq gb|KX173844.1| Zika virus isolate 16Z62 envelope protein gene, partial cds 1223 1223 55% 0.0 98% KX173844.1 Select seq dbj|AB908162.1| Zika virus gene for polyprotein, partial cds, strain: ZIKV Hu/Tahiti/01u/2014NIID 771 771 35% 0.0 97% AB908162.1 Select seq gb|KX101061.1| Zika virus isolate Bahia03, partial genome 641 1700 78% 1e-179 98% KX101061.1 Select seq gb|KX101066.1| Zika virus isolate Bahia01, partial genome 637 1504 76% 2e-178 98% KX101066.1 Select seq gb|KU985088.1| Zika virus isolate MEX/InDRE/Zika-2/2015 envelope protein gene, partial cds 632 632 27% 7e-177 99% KU985088.1 Link to comment Share on other sites More sharing options...
niman Posted September 25, 2016 Author Report Share Posted September 25, 2016 Map Update https://www.google.com/maps/d/u/0/edit?hl=en&mid=1XSxKe6FIecV8f33cQwyc7uylxeU Link to comment Share on other sites More sharing options...
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