The Anderson lab at Scripps Clinic has posted another full Zika sequence from a local Florida case, ZF38, which is most closely related to the two local Florida human sequences at Genbank.

Sequences producing significant alignments:

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Sequences producing significant alignments:

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
Select seq gb|KX842449.1|	Zika virus isolate ZIKV/Human/USA/2016/ZF10.UR-010 polyprotein gene, complete cds	18503	18503	100%	0.0	99%	KX842449.1
Select seq gb|KX832731.1|	Zika virus isolate ZIKV/Human/USA/2016/ZL2.SA-Hu0015 polyprotein gene, complete cds	18494	18494	100%	0.0	99%	KX832731.1
Select seq gb|KX838905.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM2-7719 polyprotein gene, complete cds	18491	18491	100%	0.0	99%	KX838905.1
Select seq gb|KX838904.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM1-7501 polyprotein gene, complete cds	18485	18485	100%	0.0	99%	KX838904.1
Select seq gb|KU853013.1|	Zika virus isolate Dominican Republic/2016/PD2, complete genome	18440	18440	100%	0.0	99%	KU853013.1
Select seq gb|KU853012.1|	Zika virus isolate Dominican Republic/2016/PD1, complete genome	18440	18440	100%	0.0	99%	KU853012.1
Select seq gb|KX673530.1|	Zika virus isolate PHE_semen_Guadeloupe, complete genome	18419	18419	100%	0.0	99%	KX673530.1
Select seq gb|KX838906.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM3-7729 polyprotein gene, complete cds	18410	18410	100%	0.0	99%	KX838906.1
Select seq gb|KX447510.1|	Zika virus isolate 1_0049_PF polyprotein gene, complete cds	18350	18350	100%	0.0	99%	KX447510.1
Select seq gb|KX280026.1|	Zika virus isolate Paraiba_01, complete genome	18346	18346	100%	0.0	99%	KX280026.1
Select seq gb|KX447512.1|	Zika virus isolate 1_0181_PF polyprotein gene, complete cds	18341	18341	100%	0.0	99%	KX447512.1
Select seq gb|KX369547.1|	Zika virus strain PF13/251013-18, complete genome	18341	18341	100%	0.0	99%	KX369547.1
Select seq gb|KU509998.3|	Zika virus strain Haiti/1225/2014, complete genome	18341	18341	100%	0.0	99%	KU509998.3
Select seq gb|KJ776791.2|	Zika virus strain H/PF/2013, complete genome	18337	18337	100%	0.0	99%	KJ776791.2
Select seq gb|KX447509.1|	Zika virus isolate 1_0087_PF polyprotein gene, complete cds	18337	18337	100%	0.0	99%	KX447509.1
Select seq gb|KU991811.1|	Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds	18337	18337	100%	0.0	99%	KU991811.1
Select seq gb|KU729217.2|	Zika virus isolate BeH823339 polyprotein gene, complete cds	18337	18337	100%	0.0	99%	KU729217.2
Select seq gb|KX447513.1|	Zika virus isolate 1_0134_PF polyprotein gene, complete cds	18332	18332	100%	0.0	99%	KX447513.1
Select seq gb|KX811222.1|	Zika virus isolate Brazil_2015_MG, complete genome	18328	18328	100%	0.0	99%	KX811222.1
Select seq gb|KX197205.1|	Zika virus isolate 9, complete genome	18328	18328	100%	0.0	99%	KX197205.1
Select seq gb|KX447515.1|	Zika virus isolate 1_0030_PF polyprotein gene, complete cds	18328	18328	100%	0.0	99%	KX447515.1
Select seq gb|KX447511.1|	Zika virus isolate 1_0015_PF polyprotein gene, complete cds	18328	18328	100%	0.0	99%	KX447511.1
Select seq gb|KU321639.1|	Zika virus strain ZikaSPH2015, complete genome	18328	18328	100%	0.0	99%	KU321639.1
Select seq gb|KX879604.1|	Zika virus isolate SN089, complete genome	18323	18323	100%	0.0	99%	KX879604.1
Select seq gb|KX447514.1|	Zika virus isolate 1_0035_PF polyprotein gene, complete cds	18323	18323	100%	0.0	99%	KX447514.1
Select seq gb|KX051563.1|	Zika virus isolate Haiti/1/2016, complete genome	18323	18323	100%	0.0	99%	KX051563.1
Select seq gb|KX447516.1|	Zika virus isolate 1_0111_PF polyprotein gene, complete cds	18319	18319	100%	0.0	99%	KX447516.1
Select seq gb|KU729218.1|	Zika virus isolate BeH828305 polyprotein gene, complete cds	18319	18319	100%	0.0	99%	KU729218.1
Select seq gb|KU707826.1|	Zika virus isolate SSABR1, complete genome	18319	18319	100%	0.0	99%	KU707826.1
Select seq gb|KU527068.1|	Zika virus strain Natal RGN, complete genome	18319	18319	100%	0.0	99%	KU527068.1
Select seq gb|KU365779.1|	Zika virus strain BeH819966 polyprotein gene, complete cds	18319	18319	100%	0.0	99%	KU365779.1
Select seq gb|KX879603.1|	Zika virus isolate SN062, complete genome	18314	18314	100%	0.0	99%	KX879603.1
Select seq gb|KX262887.1|	Zika virus isolate 103451, complete genome	18314	18314	100%	0.0	99%	KX262887.1
Select seq gb|KX197192.1|	Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome	18314	18314	100%	0.0	99%	KX197192.1
Select seq gb|KU926310.1|	Zika virus isolate Rio-S1, complete genome	18314	18314	100%	0.0	99%	KU926310.1
Select seq gb|KU926309.1|	Zika virus isolate Rio-U1, complete genome	18314	18314	100%	0.0	99%	KU926309.1
Select seq gb|KU940228.1|	Zika virus isolate Bahia07, partial genome	18310	18310	100%	0.0	99%	KU940228.1
Select seq gb|KX694534.1|	Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome	18305	18305	100%	0.0	99%	KX694534.1
Select seq gb|KX198135.1|	Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome	18305	18305	100%	0.0	99%	KX198135.1
Select seq gb|KU647676.1|	Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds	18305	18305	100%	0.0	99%	KU647676.1
Select seq gb|KU501217.1|	Zika virus strain 8375 polyprotein gene, complete cds	18305	18305	100%	0.0	99%	KU501217.1
Select seq gb|KU365780.1|	Zika virus strain BeH815744 polyprotein gene, complete cds	18305	18305	100%	0.0	99%	KU365780.1
Select seq gb|KU501216.1|	Zika virus strain 103344 polyprotein gene, complete cds	18301	18301	100%	0.0	99%	KU501216.1
Select seq gb|KU365777.1|	Zika virus strain BeH818995 polyprotein gene, complete cds	18301	18301	100%	0.0	99%	KU365777.1
Select seq gb|KX447517.1|	Zika virus isolate 1_0038_PF polyprotein gene, complete cds	18296	18296	100%	0.0	99%	KX447517.1
Select seq gb|KU758877.1|	Zika virus isolate 17271 polyprotein gene, complete cds	18296	18296	100%	0.0	99%	KU758877.1
Select seq gb|KX247646.1|	Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome	18296	18296	100%	0.0	99%	KX247646.1
Select seq gb|KX156776.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome	18296	18296	100%	0.0	99%	KX156776.1
Select seq gb|KX520666.1|	Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds	18292	18292	100%	0.0	99%	KX520666.1
Select seq gb|KX156774.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome	18292	18292	100%	0.0	99%	KX156774.1
Select seq gb|KU497555.1|	Zika virus isolate Brazil-ZKV2015, complete genome	18292	18292	99%	0.0	99%	KU497555.1
Select seq gb|KU820897.5|	Zika virus isolate FLR polyprotein gene, complete cds	18287	18287	100%	0.0	99%	KU820897.5
Select seq gb|KX247632.1|	Zika virus isolate MEX_I_7 polyprotein gene, complete cds	18287	18287	100%	0.0	99%	KX247632.1
Select seq gb|KX156775.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome	18287	18287	100%	0.0	99%	KX156775.1
Select seq gb|KX087102.1|	Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome	18287	18287	100%	0.0	99%	KX087102.1
Select seq gb|KU922960.1|	Zika virus isolate MEX/InDRE/Sm/2016, complete genome	18287	18287	100%	0.0	99%	KU922960.1
Select seq gb|KU365778.1|	Zika virus strain BeH819015 polyprotein gene, complete cds	18287	18287	100%	0.0	99%	KU365778.1
Select seq gb|KU312312.1|	Zika virus isolate Z1106033 polyprotein gene, complete cds	18287	18287	100%	0.0	99%	KU312312.1
Select seq gb|KU922923.1|	Zika virus isolate MEX/InDRE/Lm/2016, complete genome	18283	18283	100%	0.0	99%	KU922923.1
Select seq gb|KX856011.1|	Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome	18278	18278	100%	0.0	99%	KX856011.1
Select seq gb|KX806557.1|	Zika virus isolate TS17-2016, complete genome	18278	18278	100%	0.0	99%	KX806557.1
Select seq gb|KX548902.1|	Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds	18278	18278	100%	0.0	99%	KX548902.1
Select seq gb|KX446951.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome	18278	18278	100%	0.0	99%	KX446951.1
Select seq gb|KU937936.1|	Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds	18278	18278	100%	0.0	99%	KU937936.1
Select seq gb|KU501215.1|	Zika virus strain PRVABC59, complete genome	18278	18278	100%	0.0	99%	KU501215.1
Select seq gb|KX601168.1|	Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome	18274	18274	100%	0.0	99%	KX601168.1
Select seq gb|KX446950.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome	18274	18274	100%	0.0	99%	KX446950.1
Select seq gb|KX087101.2|	Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome	18274	18274	100%	0.0	99%	KX087101.2
Select seq gb|KU870645.1|	Zika virus isolate FB-GWUH-2016, complete genome	18274	18274	100%	0.0	99%	KU870645.1
Select seq gb|KX702400.1|	Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome	18269	18269	100%	0.0	99%	KX702400.1
Select seq gb|KX377337.1|	Zika virus strain PRVABC-59, complete genome	18269	18269	100%	0.0	99%	KX377337.1
Select seq gb|KX766029.1|	Zika virus isolate R116265, complete genome	18260	18260	100%	0.0	99%	KX766029.1
Select seq gb|KU820898.1|	Zika virus isolate GZ01 polyprotein gene, complete cds	18260	18260	100%	0.0	99%	KU820898.1
Select seq gb|KX056898.1|	Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds	18256	18256	100%	0.0	99%	KX056898.1
Select seq gb|KU955590.1|	Zika virus isolate Z16019 polyprotein gene, complete cds	18256	18256	100%	0.0	99%	KU955590.1
Select seq gb|KX766028.1|	Zika virus isolate R114916, complete genome	18253	18253	100%	0.0	99%	KX766028.1
Select seq gb|KU740184.2|	Zika virus isolate GD01 polyprotein gene, complete cds	18251	18251	100%	0.0	99%	KU740184.2
Select seq gb|KU761564.1|	Zika virus isolate GDZ16001 polyprotein gene, complete cds	18251	18251	100%	0.0	99%	KU761564.1
Select seq gb|KX117076.1|	Zika virus isolate Zhejiang04, complete genome	18247	18247	100%	0.0	99%	KX117076.1
Select seq gb|KX185891.1|	Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds	18238	18238	100%	0.0	99%	KX185891.1
Select seq gb|KU963796.1|	Zika virus isolate SZ-WIV01 polyprotein gene, complete cds	18238	18238	100%	0.0	99%	KU963796.1
Select seq gb|KX253996.1|	Zika virus isolate ZKC2/2016, complete genome	18233	18233	100%	0.0	99%	KX253996.1
Select seq gb|KU955589.1|	Zika virus isolate Z16006 polyprotein gene, complete cds	18233	18233	100%	0.0	99%	KU955589.1
Select seq gb|KU820899.2|	Zika virus isolate ZJ03, complete genome	18233	18233	100%	0.0	99%	KU820899.2
Select seq gb|KX266255.1|	Zika virus isolate ZIKV_SMGC-1, complete genome	18229	18229	100%	0.0	99%	KX266255.1
Select seq gb|KU866423.2|	Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds	18229	18229	100%	0.0	99%	KU866423.2
Select seq gb|KU940224.1|	Zika virus isolate Bahia09, partial genome	18215	18215	99%	0.0	99%	KU940224.1
Select seq gb|KU744693.1|	Zika virus isolate VE_Ganxian, complete genome	18094	18094	100%	0.0	99%	KU744693.1
Select seq gb|KX827309.1|	Zika virus isolate ZKA-16-291 polyprotein gene, complete cds	18071	18071	100%	0.0	99%	KX827309.1
Select seq gb|KX813683.1|	Zika virus isolate ZKA-16-097 polyprotein gene, complete cds	18058	18058	100%	0.0	99%	KX813683.1
Select seq gb|KU681081.3|	Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome	18004	18004	100%	0.0	99%	KU681081.3
Select seq gb|KX694532.1|	Zika virus strain ZIKV/Homo sapiens/THA/PLCal_ZV/2013, complete genome	17881	17881	100%	0.0	99%	KX694532.1
Select seq gb|KU955593.1|	Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome	17697	17697	100%	0.0	98%	KU955593.1
Select seq gb|JN860885.1|	Zika virus isolate FSS13025 polyprotein gene, partial cds	17695	17695	99%	0.0	98%	JN860885.1
Select seq gb|KF993678.1|	Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds	17650	17650	98%	0.0	99%	KF993678.1
Select seq gb|EU545988.1|	Zika virus polyprotein gene, complete cds	17542	17542	100%	0.0	98%	EU545988.1
Select seq gb|KU681082.3|	Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome	17394	17394	100%	0.0	98%	KU681082.3
Select seq gb|KX601167.1|	Zika virus strain ZIKV/Aedes sp./MYS/P6-740/1966, complete genome	16372	16372	100%	0.0	95%	KX601167.1
Select seq gb|KX694533.1|	Zika virus strain ZIKV/Aedes aegypti/MYS/P6-740/1966, complete genome	16363	16363	100%	0.0	95%	KX694533.1
Select seq gb|HQ234499.1|	Zika virus isolate P6-740 polyprotein gene, partial cds	16363	16363	99%	0.0	95%	HQ234499.1

Full sequences

Tree with ZM 5 added