niman Posted October 5, 2016 Report Share Posted October 5, 2016 (edited) A consortium, including the Harvard/MIT Broad Institute are releasing 33 Zika sequences, including a subset from Santo Domingo Dominican Republic which match the Florida sub-clade (the Florida sequences from Broad are from same cases as the Andersen lab at Scripps Clinic. Edited October 7, 2016 by niman Link to comment Share on other sites More sharing options...
niman Posted October 5, 2016 Author Report Share Posted October 5, 2016 The Broad Viral Genomics Group and MIT, together with partners at Oswaldo Cruz Foundation (Fiocruz) in Brazil; National Autonomous University of Honduras, and Florida Gulf Coast University (FGCU), are releasing 33 near-complete Zika virus (ZIKV) genomes sequenced from patient samples and mosquito pools collected in Brazil, Honduras, the Dominican Republic, and Florida between March and September 2016. http://virological.org/t/33-zika-virus-genomes-sequenced-from-patient-and-pooled-mosquito-samples/372 Link to comment Share on other sites More sharing options...
niman Posted October 5, 2016 Author Report Share Posted October 5, 2016 (edited) 33 Zika virus genomes sequenced from patient and pooled mosquito samples Zika virus Oct 4 1 / 3 Oct 5 19h ago haydenHayden Metsky 22h 33 Zika virus genomes sequenced from patient and pooled mosquito samples collected in Rio de Janeiro, Tegucigalpa, Santo Domingo, and Florida, March-September 2016 The Broad Viral Genomics Group and MIT, together with partners at Oswaldo Cruz Foundation (Fiocruz) in Brazil; National Autonomous University of Honduras, and Florida Gulf Coast University (FGCU), are releasing 33 near-complete Zika virus (ZIKV) genomes sequenced from patient samples and mosquito pools collected in Brazil, Honduras, the Dominican Republic, and Florida between March and September 2016. We are releasing the assemblies as consensus genomes and are in the process of depositing assemblies and read data, as well as sample metadata (generously shared by partners and including: place and date of collection, age, sex, and date of symptom onset), on NCBI GenBank. The 33 ZIKV consensus sequences can be downloaded here: ZIKV_BROAD_2016-10.fasta.txt17 (342.5 KB; this is a fasta file ending in '.txt' because virological only allows certain file extensions) Of the 33 samples, 9 are from Rio de Janeiro, Brazil, 7 are from Tegucigalpa, Honduras, 8 are from Santo Domingo, Dominican Republic, and 9 are from Florida, United States. 29 are from Zika-infected patients (10 urine, 7 plasma, 12 serum) and 4 are from ZIKV+ mosquito pools caught in Florida. All 33 genomes have >70% of the Zika genome and 22 have >95% of the Zika genome covered. The samples were not cultured or passaged prior to sequencing. We experimented with different unbiased library preparation methods, and/or used amplicon-based sequencing, followed by Illumina sequencing on MiSeq and HiSeq platforms at the Broad Institute. Genomes were assembled using the Sabeti lab’s viral-ngs pipeline9, which creates a de novo assembly from cleaned reads and performs additional refinement in a reference-assisted scaffolding process. We assembled 17 Zika genomes after enriching libraries for Zika content by the Sabeti lab’s hybrid capture10 protocol. 13 have median coverage >25x and 4 have median coverage >250x. The other 16 were sequenced with amplicon-based sequencing using a protocol3 developed by the ZiBRA project and modified by the Andersen lab. We are still optimizing our pre-sequencing sample protocols, and will document our full process in a future update. For more information about this project and data release, contact [email protected]. Disclaimer: Please feel free to download, use, and share this data. Our partners and we are currently in the process of preparing publications describing our wet lab and genome analysis methods, and describing viral evolution and transmission patterns. We will post progress regarding data improvements, publications, and terms of use on this forum. If you intend to use these sequences for publication prior to the release of our papers, please contact us directly. If you are interested in joining our collaboration—or if you have any other questions—please also contact us directly. The work was and continues to be part of a productive and growing collaboration across nations. Those currently involved include the following investigators and their teams: Pardis Sabeti, Broad Institute and Harvard University, USA Irene Bosch and Lee Gehrke, MIT, USA Thiago Moreno L. Souza, Patrícia T. Bozza, Dr. Gonzalo Belo, and Wim Degrave, Oswaldo Cruz Foundation, Brazil Fernando Bozza, Oswaldo Cruz Foundation and D’or Institute, Brazil Fabiano L. Thompson, Federal University of Rio de Janeiro, Brazil Kristian Andersen, The Scripps Research Institute, USA Salim Mattar, Universidad de Córdoba, Colombia Ivette Lorenzana, Universidad Nacional de Honduras, Honduras Sharon Isern and Scott F. Michael, Florida Gulf Coast University, USA Daniel Olson and Edwin J. Asturias, Colorado School of Public Health, USA Edited October 5, 2016 by niman Link to comment Share on other sites More sharing options...
niman Posted October 5, 2016 Author Report Share Posted October 5, 2016 DOM_2016_BB-0180_SER matches Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 18474 18474 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 18474 18474 100% 0.0 99% KU853012.1 Select seq gb|KX842449.1| Zika virus isolate ZIKV/Human/USA/2016/ZF10.UR-010 polyprotein gene, complete cds 18456 18456 100% 0.0 99% KX842449.1 Select seq gb|KX838905.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM2-7719 polyprotein gene, complete cds 18453 18453 100% 0.0 99% KX838905.1 Select seq gb|KX838904.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM1-7501 polyprotein gene, complete cds 18447 18447 100% 0.0 99% KX838904.1 Select seq gb|KX832731.1| Zika virus isolate ZIKV/Human/USA/2016/ZL2.SA-Hu0015 polyprotein gene, complete cds 18447 18447 100% 0.0 99% KX832731.1 Select seq gb|KX838906.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM3-7729 polyprotein gene, complete cds 18444 18444 100% 0.0 99% KX838906.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 18444 18444 100% 0.0 99% KX673530.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 18393 18393 100% 0.0 99% KX447510.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 18390 18390 100% 0.0 99% KX280026.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 18384 18384 100% 0.0 99% KX447512.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 18384 18384 100% 0.0 99% KX369547.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 18384 18384 100% 0.0 99% KU509998.3 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 18381 18381 100% 0.0 99% KJ776791.2 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 18381 18381 100% 0.0 99% KX447509.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 18381 18381 100% 0.0 99% KU991811.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 18381 18381 100% 0.0 99% KU729217.2 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 18375 18375 100% 0.0 99% KX447513.1 Select seq gb|KX811222.1| Zika virus isolate Brazil_2015_MG, complete genome 18372 18372 100% 0.0 99% KX811222.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 18372 18372 100% 0.0 99% KX197205.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 18372 18372 100% 0.0 99% KX447515.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 18372 18372 100% 0.0 99% KX447511.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 18372 18372 100% 0.0 99% KU321639.1 Select seq gb|KX879604.1| Zika virus isolate SN089, complete genome 18366 18366 100% 0.0 99% KX879604.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 18366 18366 100% 0.0 99% KX447514.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 18366 18366 100% 0.0 99% KX051563.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 18363 18363 100% 0.0 99% KX447516.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 18363 18363 100% 0.0 99% KU729218.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 18363 18363 100% 0.0 99% KU707826.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 18363 18363 100% 0.0 99% KU527068.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 18363 18363 100% 0.0 99% KU365779.1 Select seq gb|KX879603.1| Zika virus isolate SN062, complete genome 18357 18357 100% 0.0 99% KX879603.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 18357 18357 100% 0.0 99% KX262887.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 18357 18357 100% 0.0 99% KX197192.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 18357 18357 100% 0.0 99% KU926310.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 18357 18357 100% 0.0 99% KU926309.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 18354 18354 100% 0.0 99% KU940228.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 18348 18348 100% 0.0 99% KX694534.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 18348 18348 100% 0.0 99% KX198135.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 18348 18348 100% 0.0 99% KU501217.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 18348 18348 100% 0.0 99% KU365780.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 18345 18345 100% 0.0 99% KU647676.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 18345 18345 100% 0.0 99% KU501216.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 18345 18345 100% 0.0 99% KU365777.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 18339 18339 100% 0.0 99% KX447517.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 18339 18339 100% 0.0 99% KU758877.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 18339 18339 100% 0.0 99% KX247646.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 18339 18339 100% 0.0 99% KX156776.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 18336 18336 100% 0.0 99% KX520666.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 18336 18336 100% 0.0 99% KX156774.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 18336 18336 99% 0.0 99% KU497555.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 18330 18330 100% 0.0 99% KU820897.5 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 18330 18330 100% 0.0 99% KX247632.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 18330 18330 100% 0.0 99% KX156775.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 18330 18330 100% 0.0 99% KX087102.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 18330 18330 100% 0.0 99% KU365778.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 18330 18330 100% 0.0 99% KU312312.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 18327 18327 100% 0.0 99% KU922960.1 Select seq gb|KX856011.1| Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome 18321 18321 100% 0.0 99% KX856011.1 Select seq gb|KX806557.1| Zika virus isolate TS17-2016, complete genome 18321 18321 100% 0.0 99% KX806557.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 18321 18321 100% 0.0 99% KX548902.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 18321 18321 100% 0.0 99% KX446951.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 18321 18321 100% 0.0 99% KU937936.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 18321 18321 100% 0.0 99% KU922923.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 18321 18321 100% 0.0 99% KU501215.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 18318 18318 100% 0.0 99% KX601168.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 18318 18318 100% 0.0 99% KX446950.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 18318 18318 100% 0.0 99% KX087101.2 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 18318 18318 100% 0.0 99% KU870645.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 18312 18312 100% 0.0 99% KX702400.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 18312 18312 100% 0.0 99% KX377337.1 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 18303 18303 100% 0.0 99% KX766029.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 18303 18303 100% 0.0 99% KU820898.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 18300 18300 100% 0.0 99% KX056898.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 18300 18300 100% 0.0 99% KU955590.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 18296 18296 100% 0.0 99% KX766028.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 18294 18294 100% 0.0 99% KU740184.2 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 18294 18294 100% 0.0 99% KU761564.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 18291 18291 100% 0.0 99% KX117076.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 18282 18282 100% 0.0 99% KX185891.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 18282 18282 100% 0.0 99% KU963796.1 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 18276 18276 100% 0.0 99% KX253996.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 18276 18276 100% 0.0 99% KU955589.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 18276 18276 100% 0.0 99% KU820899.2 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 18273 18273 100% 0.0 99% KX266255.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 18273 18273 100% 0.0 99% KU866423.2 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 18258 18258 99% 0.0 99% KU940224.1 Select seq gb|KU744693.1| Zika virus isolate VE_Ganxian, complete genome 18137 18137 100% 0.0 99% KU744693.1 Select seq gb|KX827309.1| Zika virus isolate ZKA-16-291 polyprotein gene, complete cds 18114 18114 100% 0.0 99% KX827309.1 Select seq gb|KX813683.1| Zika virus isolate ZKA-16-097 polyprotein gene, complete cds 18101 18101 100% 0.0 99% KX813683.1 Select seq gb|KU681081.3| Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome 18047 18047 100% 0.0 99% KU681081.3 Select seq gb|KX694532.1| Zika virus strain ZIKV/Homo sapiens/THA/PLCal_ZV/2013, complete genome 17933 17933 100% 0.0 99% KX694532.1 Select seq gb|KU955593.1| Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome 17750 17750 100% 0.0 98% KU955593.1 Select seq gb|JN860885.1| Zika virus isolate FSS13025 polyprotein gene, partial cds 17748 17748 99% 0.0 98% JN860885.1 Select seq gb|KF993678.1| Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds 17703 17703 98% 0.0 99% KF993678.1 Select seq gb|EU545988.1| Zika virus polyprotein gene, complete cds 17594 17594 100% 0.0 98% EU545988.1 Select seq gb|KU681082.3| Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome 17447 17447 100% 0.0 98% KU681082.3 Select seq gb|KX601167.1| Zika virus strain ZIKV/Aedes sp./MYS/P6-740/1966, complete genome 16419 16419 100% 0.0 95% KX601167.1 Select seq gb|HQ234499.1| Zika virus isolate P6-740 polyprotein gene, partial cds 16411 16411 99% 0.0 95% HQ234499.1 Select seq gb|KX694533.1| Zika virus strain ZIKV/Aedes aegypti/MYS/P6-740/1966, complete genome 16410 16410 100% 0.0 95% KX694533.1 Link to comment Share on other sites More sharing options...
niman Posted October 5, 2016 Author Report Share Posted October 5, 2016 DOM_2016_BB-0115_SER matches Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 18462 18462 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 18460 18460 100% 0.0 99% KU853012.1 Select seq gb|KX842449.1| Zika virus isolate ZIKV/Human/USA/2016/ZF10.UR-010 polyprotein gene, complete cds 18444 18444 100% 0.0 99% KX842449.1 Select seq gb|KX838905.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM2-7719 polyprotein gene, complete cds 18438 18438 100% 0.0 99% KX838905.1 Select seq gb|KX838904.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM1-7501 polyprotein gene, complete cds 18435 18435 100% 0.0 99% KX838904.1 Select seq gb|KX832731.1| Zika virus isolate ZIKV/Human/USA/2016/ZL2.SA-Hu0015 polyprotein gene, complete cds 18435 18435 100% 0.0 99% KX832731.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 18429 18429 100% 0.0 99% KX673530.1 Select seq gb|KX838906.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM3-7729 polyprotein gene, complete cds 18420 18420 100% 0.0 99% KX838906.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 18372 18372 100% 0.0 99% KX447510.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 18366 18366 100% 0.0 99% KX280026.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 18363 18363 100% 0.0 99% KX447512.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 18363 18363 100% 0.0 99% KX369547.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 18363 18363 100% 0.0 99% KU509998.3 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 18357 18357 100% 0.0 99% KJ776791.2 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 18357 18357 100% 0.0 99% KX447509.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 18357 18357 100% 0.0 99% KU991811.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 18357 18357 100% 0.0 99% KU729217.2 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 18354 18354 100% 0.0 99% KX447513.1 Select seq gb|KX811222.1| Zika virus isolate Brazil_2015_MG, complete genome 18348 18348 100% 0.0 99% KX811222.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 18348 18348 100% 0.0 99% KX197205.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 18348 18348 100% 0.0 99% KX447515.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 18348 18348 100% 0.0 99% KX447511.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 18348 18348 100% 0.0 99% KU321639.1 Select seq gb|KX879604.1| Zika virus isolate SN089, complete genome 18345 18345 100% 0.0 99% KX879604.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 18345 18345 100% 0.0 99% KX447514.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 18345 18345 100% 0.0 99% KX051563.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 18339 18339 100% 0.0 99% KX447516.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 18339 18339 100% 0.0 99% KU729218.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 18339 18339 100% 0.0 99% KU707826.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 18339 18339 100% 0.0 99% KU527068.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 18339 18339 100% 0.0 99% KU365779.1 Select seq gb|KX879603.1| Zika virus isolate SN062, complete genome 18336 18336 100% 0.0 99% KX879603.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 18336 18336 100% 0.0 99% KX262887.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 18336 18336 100% 0.0 99% KX197192.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 18336 18336 100% 0.0 99% KU926310.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 18336 18336 100% 0.0 99% KU926309.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 18330 18330 100% 0.0 99% KU940228.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 18327 18327 100% 0.0 99% KX694534.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 18327 18327 100% 0.0 99% KX198135.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 18327 18327 100% 0.0 99% KU501217.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 18327 18327 100% 0.0 99% KU365780.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 18321 18321 100% 0.0 99% KU647676.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 18321 18321 100% 0.0 99% KU501216.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 18321 18321 100% 0.0 99% KU365777.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 18318 18318 100% 0.0 99% KX447517.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 18318 18318 100% 0.0 99% KU758877.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 18318 18318 100% 0.0 99% KX247646.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 18318 18318 100% 0.0 99% KX156776.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 18314 18314 99% 0.0 99% KU497555.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 18312 18312 100% 0.0 99% KX520666.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 18312 18312 100% 0.0 99% KX156774.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 18309 18309 100% 0.0 99% KU820897.5 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 18309 18309 100% 0.0 99% KX247632.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 18309 18309 100% 0.0 99% KX156775.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 18309 18309 100% 0.0 99% KX087102.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 18309 18309 100% 0.0 99% KU365778.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 18309 18309 100% 0.0 99% KU312312.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 18303 18303 100% 0.0 99% KU922960.1 Select seq gb|KX856011.1| Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome 18300 18300 100% 0.0 99% KX856011.1 Select seq gb|KX806557.1| Zika virus isolate TS17-2016, complete genome 18300 18300 100% 0.0 99% KX806557.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 18300 18300 100% 0.0 99% KX548902.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 18300 18300 100% 0.0 99% KX446951.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 18300 18300 100% 0.0 99% KU937936.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 18300 18300 100% 0.0 99% KU922923.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 18300 18300 100% 0.0 99% KU501215.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 18294 18294 100% 0.0 99% KX601168.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 18294 18294 100% 0.0 99% KX446950.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 18294 18294 100% 0.0 99% KX087101.2 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 18294 18294 100% 0.0 99% KU870645.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 18291 18291 100% 0.0 99% KX702400.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 18291 18291 100% 0.0 99% KX377337.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 18285 18285 100% 0.0 99% KX056898.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 18285 18285 100% 0.0 99% KU955590.1 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 18282 18282 100% 0.0 99% KX766029.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 18282 18282 100% 0.0 99% KU820898.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 18274 18274 100% 0.0 99% KX766028.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 18273 18273 100% 0.0 99% KU740184.2 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 18273 18273 100% 0.0 99% KU761564.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 18267 18267 100% 0.0 99% KX117076.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 18258 18258 100% 0.0 99% KX185891.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 18258 18258 100% 0.0 99% KU963796.1 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 18254 18254 100% 0.0 99% KX253996.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 18254 18254 100% 0.0 99% KU955589.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 18254 18254 100% 0.0 99% KU820899.2 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 18251 18251 100% 0.0 99% KX266255.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 18249 18249 100% 0.0 99% KU866423.2 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 18236 18236 99% 0.0 99% KU940224.1 Select seq gb|KU744693.1| Zika virus isolate VE_Ganxian, complete genome 18123 18123 100% 0.0 99% KU744693.1 Select seq gb|KX827309.1| Zika virus isolate ZKA-16-291 polyprotein gene, complete cds 18101 18101 100% 0.0 99% KX827309.1 Select seq gb|KX813683.1| Zika virus isolate ZKA-16-097 polyprotein gene, complete cds 18096 18096 100% 0.0 99% KX813683.1 Select seq gb|KU681081.3| Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome 18024 18024 100% 0.0 99% KU681081.3 Select seq gb|KX694532.1| Zika virus strain ZIKV/Homo sapiens/THA/PLCal_ZV/2013, complete genome 17903 17903 100% 0.0 99% KX694532.1 Select seq gb|KU955593.1| Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome 17726 17726 100% 0.0 98% KU955593.1 Select seq gb|JN860885.1| Zika virus isolate FSS13025 polyprotein gene, partial cds 17726 17726 99% 0.0 98% JN860885.1 Select seq gb|KF993678.1| Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds 17670 17670 98% 0.0 99% KF993678.1 Select seq gb|EU545988.1| Zika virus polyprotein gene, complete cds 17562 17562 100% 0.0 98% EU545988.1 Select seq gb|KU681082.3| Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome 17416 17416 100% 0.0 98% KU681082.3 Select seq gb|KX601167.1| Zika virus strain ZIKV/Aedes sp./MYS/P6-740/1966, complete genome 16388 16388 100% 0.0 95% KX601167.1 Select seq gb|KX694533.1| Zika virus strain ZIKV/Aedes aegypti/MYS/P6-740/1966, complete genome 16379 16379 100% 0.0 95% KX694533.1 Select seq gb|HQ234499.1| Zika virus isolate P6-740 polyprotein gene, partial cds 16379 16379 99% 0.0 95% HQ234499.1 Link to comment Share on other sites More sharing options...
niman Posted October 6, 2016 Author Report Share Posted October 6, 2016 Link to comment Share on other sites More sharing options...
niman Posted October 7, 2016 Author Report Share Posted October 7, 2016 1. Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds 10,365 bp linear RNA Accession: KX922703.1 GI: 1071930510 GenBankFASTAGraphics Select item 10719305122. Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds 10,609 bp linear RNA Accession: KX922704.1 GI: 1071930512 GenBankFASTAGraphics Select item 10719305143. Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds 10,609 bp linear RNA Accession: KX922705.1 GI: 1071930514 GenBankFASTAGraphics Select item 10719305164. Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds 10,610 bp linear RNA Accession: KX922706.1 GI: 1071930516 GenBankFASTAGraphics Select item 10719305185. Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds 10,609 bp linear RNA Accession: KX922707.1 GI: 1071930518 GenBankFASTAGraphics Select item 10719305206. Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds 10,606 bp linear RNA Accession: KX922708.1 GI: 1071930520 GenBankFASTAGraphics Link to comment Share on other sites More sharing options...
niman Posted October 8, 2016 Author Report Share Posted October 8, 2016 DOM_2016_BB-0076_SER matches Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KX922703.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds 4543 14628 79% 0.0 99% KX922703.1 Select seq gb|KX842449.2| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds 4543 14642 79% 0.0 99% KX842449.2 Select seq gb|KX838906.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds 4538 14633 79% 0.0 99% KX838906.2 Select seq gb|KX838905.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds 4538 14628 79% 0.0 99% KX838905.2 Select seq gb|KX838904.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds 4538 14626 79% 0.0 99% KX838904.2 Select seq gb|KX832731.1| Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds 4538 14630 79% 0.0 99% KX832731.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 4538 14653 79% 0.0 99% KU853012.1 Select seq gb|KX922707.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds 4534 14632 79% 0.0 99% KX922707.1 Select seq gb|KX922704.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds 4534 14630 79% 0.0 99% KX922704.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 4534 14624 79% 0.0 99% KX673530.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 4534 14651 79% 0.0 99% KU853013.1 Select seq gb|KX922708.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds 4529 14615 79% 0.0 99% KX922708.1 Select seq gb|KX922706.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds 4529 14624 79% 0.0 99% KX922706.1 Select seq gb|KX922705.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds 4527 14619 79% 0.0 99% KX922705.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 4520 14599 79% 0.0 99% KU991811.1 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 4516 14597 79% 0.0 99% KJ776791.2 Select seq gb|KX447519.1| Zika virus isolate 1_0199_PF polyprotein gene, partial cds 4516 12440 67% 0.0 99% KX447519.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 4516 14556 79% 0.0 99% KX447517.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 4516 14574 79% 0.0 99% KX447516.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 4516 14594 79% 0.0 99% KX447512.1 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 4516 14588 79% 0.0 99% KX447509.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 4516 14594 79% 0.0 99% KX369547.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 4516 14574 79% 0.0 99% KU729217.2 Select seq gb|KX893855.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-2/2016, complete genome 4511 14518 79% 0.0 99% KX893855.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 4511 14532 79% 0.0 99% KU820897.5 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 4511 14514 79% 0.0 99% KX702400.1 Select seq gb|KX447518.1| Zika virus isolate 1_0117_PF polyprotein gene, partial cds 4511 12431 67% 0.0 99% KX447518.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 4511 14579 79% 0.0 99% KX447515.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 4511 14579 79% 0.0 99% KX447514.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 4511 14592 79% 0.0 99% KX447513.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 4511 14581 79% 0.0 99% KX447511.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 4511 14588 79% 0.0 99% KX447510.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 4511 14541 79% 0.0 99% KX247646.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 4511 14545 79% 0.0 99% KX198135.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 4511 14540 79% 0.0 99% KX156776.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 4511 14534 79% 0.0 99% KX156774.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 4511 14532 79% 0.0 99% KX087102.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 4511 14529 79% 0.0 99% KU922960.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 4511 14525 79% 0.0 99% KU922923.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 4511 14552 79% 0.0 99% KU497555.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 4511 14563 79% 0.0 99% KU527068.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 4511 14541 79% 0.0 99% KU647676.1 Select seq gb|KX879603.1| Zika virus isolate SN062, complete genome 4507 14565 79% 0.0 99% KX879603.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 4507 14534 79% 0.0 99% KX548902.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 4507 14579 79% 0.0 99% KX280026.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 4507 14536 79% 0.0 99% KX156775.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 4507 14567 79% 0.0 99% KU926309.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 4507 14570 79% 0.0 99% KU729218.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 4507 14563 79% 0.0 99% KU707826.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 4507 14563 79% 0.0 99% KU365779.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 4504 14574 79% 0.0 99% KX051563.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 4504 14586 79% 0.0 99% KU509998.3 Select seq gb|KX879604.1| Zika virus isolate SN089, complete genome 4502 14568 79% 0.0 99% KX879604.1 Select seq gb|KX811222.1| Zika virus isolate Brazil_2015_MG, complete genome 4502 14565 79% 0.0 99% KX811222.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 4502 14574 79% 0.0 99% KX197205.1 Select seq gb|KX576684.1| Zika virus vector pZIKV-ICD, complete sequence 4502 14575 79% 0.0 99% KX576684.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 4502 14576 79% 0.0 99% KU321639.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 4500 14570 79% 0.0 99% KX694534.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 4500 14565 79% 0.0 99% KX262887.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 4500 14567 79% 0.0 99% KX197192.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 4498 14567 79% 0.0 99% KU501217.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 4498 14550 79% 0.0 99% KU365780.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 4498 14545 79% 0.0 99% KU365777.1 Select seq gb|KX856011.1| Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome 4495 14547 79% 0.0 99% KX856011.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 4495 14541 79% 0.0 99% KX446950.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 4495 14563 79% 0.0 99% KU758877.1 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 4495 14536 79% 0.0 99% KU870645.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 4495 14558 79% 0.0 99% KU926310.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 4495 14552 79% 0.0 99% KU312312.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 4493 14541 79% 0.0 99% KX520666.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 4493 14556 79% 0.0 99% KU940228.1 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 4493 14466 78% 0.0 99% KU940224.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 4493 14525 79% 0.0 99% KU820898.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 4493 14516 79% 0.0 99% KU740184.2 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 4493 14516 79% 0.0 99% KU761564.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 4493 14561 79% 0.0 99% KU501216.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 4493 14547 79% 0.0 99% KU365778.1 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 4491 14527 79% 0.0 99% KX766029.1 Select seq gb|KX806557.1| Zika virus isolate TS17-2016, complete genome 4489 14529 79% 0.0 99% KX806557.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 4489 14518 79% 0.0 99% KX766028.1 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 4489 14500 79% 0.0 99% KX266255.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 4489 14534 79% 0.0 99% KX601168.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 4489 14543 79% 0.0 99% KX446951.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 4489 14536 79% 0.0 99% KX377337.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 4489 14494 79% 0.0 99% KU866423.2 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 4489 14500 79% 0.0 99% KX253996.1 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 4489 14550 79% 0.0 99% KX247632.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 4489 14534 79% 0.0 99% KX087101.2 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 4489 14505 79% 0.0 99% KX185891.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 4489 14541 79% 0.0 99% KU937936.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 4489 14509 79% 0.0 99% KX117076.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 4489 14505 79% 0.0 99% KU963796.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 4489 14500 79% 0.0 99% KU955589.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 4489 14500 79% 0.0 99% KU820899.2 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 4489 14540 79% 0.0 99% KU501215.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 4484 14512 79% 0.0 99% KX056898.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 4484 14507 79% 0.0 99% KU955590.1 Select seq gb|KU744693.1| Zika virus isolate VE_Ganxian, complete genome 4448 14379 79% 0.0 99% KU744693.1 Select seq gb|KX827309.1| Zika virus isolate ZKA-16-291 polyprotein gene, complete cds 4446 14379 79% 0.0 99% KX827309.1 Select seq gb|KX813683.1| Zika virus isolate ZKA-16-097 polyprotein gene, complete cds 4439 14365 79% 0.0 99% KX813683.1 Link to comment Share on other sites More sharing options...
niman Posted October 8, 2016 Author Report Share Posted October 8, 2016 DOM_2016_BB-0115_SER matches Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 18462 18462 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 18460 18460 100% 0.0 99% KU853012.1 Select seq gb|KX842449.2| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds 18447 18447 100% 0.0 99% KX842449.2 Select seq gb|KX922707.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds 18438 18438 100% 0.0 99% KX922707.1 Select seq gb|KX922703.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds 18435 18435 100% 0.0 99% KX922703.1 Select seq gb|KX838905.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds 18435 18435 100% 0.0 99% KX838905.2 Select seq gb|KX832731.1| Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds 18435 18435 100% 0.0 99% KX832731.1 Select seq gb|KX922706.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds 18431 18431 100% 0.0 99% KX922706.1 Select seq gb|KX922704.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds 18429 18429 100% 0.0 99% KX922704.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 18429 18429 100% 0.0 99% KX673530.1 Select seq gb|KX838906.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds 18426 18426 100% 0.0 99% KX838906.2 Select seq gb|KX838904.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds 18424 18424 100% 0.0 99% KX838904.2 Select seq gb|KX922705.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds 18413 18413 100% 0.0 99% KX922705.1 Select seq gb|KX922708.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds 18408 18408 100% 0.0 99% KX922708.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 18372 18372 100% 0.0 99% KX447510.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 18366 18366 100% 0.0 99% KX280026.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 18363 18363 100% 0.0 99% KX447512.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 18363 18363 100% 0.0 99% KX369547.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 18363 18363 100% 0.0 99% KU509998.3 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 18357 18357 100% 0.0 99% KJ776791.2 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 18357 18357 100% 0.0 99% KX447509.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 18357 18357 100% 0.0 99% KU991811.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 18357 18357 100% 0.0 99% KU729217.2 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 18354 18354 100% 0.0 99% KX447513.1 Select seq gb|KX811222.1| Zika virus isolate Brazil_2015_MG, complete genome 18348 18348 100% 0.0 99% KX811222.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 18348 18348 100% 0.0 99% KX197205.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 18348 18348 100% 0.0 99% KX447515.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 18348 18348 100% 0.0 99% KX447511.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 18348 18348 100% 0.0 99% KU321639.1 Select seq gb|KX879604.1| Zika virus isolate SN089, complete genome 18345 18345 100% 0.0 99% KX879604.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 18345 18345 100% 0.0 99% KX447514.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 18345 18345 100% 0.0 99% KX051563.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 18339 18339 100% 0.0 99% KX447516.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 18339 18339 100% 0.0 99% KU729218.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 18339 18339 100% 0.0 99% KU707826.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 18339 18339 100% 0.0 99% KU527068.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 18339 18339 100% 0.0 99% KU365779.1 Select seq gb|KX879603.1| Zika virus isolate SN062, complete genome 18336 18336 100% 0.0 99% KX879603.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 18336 18336 100% 0.0 99% KX262887.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 18336 18336 100% 0.0 99% KX197192.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 18336 18336 100% 0.0 99% KU926310.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 18336 18336 100% 0.0 99% KU926309.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 18330 18330 100% 0.0 99% KU940228.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 18327 18327 100% 0.0 99% KX694534.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 18327 18327 100% 0.0 99% KX198135.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 18327 18327 100% 0.0 99% KU501217.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 18327 18327 100% 0.0 99% KU365780.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 18321 18321 100% 0.0 99% KU647676.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 18321 18321 100% 0.0 99% KU501216.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 18321 18321 100% 0.0 99% KU365777.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 18318 18318 100% 0.0 99% KX447517.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 18318 18318 100% 0.0 99% KU758877.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 18318 18318 100% 0.0 99% KX247646.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 18318 18318 100% 0.0 99% KX156776.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 18314 18314 99% 0.0 99% KU497555.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 18312 18312 100% 0.0 99% KX520666.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 18312 18312 100% 0.0 99% KX156774.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 18309 18309 100% 0.0 99% KU820897.5 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 18309 18309 100% 0.0 99% KX247632.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 18309 18309 100% 0.0 99% KX156775.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 18309 18309 100% 0.0 99% KX087102.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 18309 18309 100% 0.0 99% KU365778.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 18309 18309 100% 0.0 99% KU312312.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 18303 18303 100% 0.0 99% KU922960.1 Select seq gb|KX856011.1| Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome 18300 18300 100% 0.0 99% KX856011.1 Select seq gb|KX806557.1| Zika virus isolate TS17-2016, complete genome 18300 18300 100% 0.0 99% KX806557.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 18300 18300 100% 0.0 99% KX548902.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 18300 18300 100% 0.0 99% KX446951.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 18300 18300 100% 0.0 99% KU937936.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 18300 18300 100% 0.0 99% KU922923.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 18300 18300 100% 0.0 99% KU501215.1 Select seq gb|KX893855.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-2/2016, complete genome 18294 18294 100% 0.0 99% KX893855.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 18294 18294 100% 0.0 99% KX601168.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 18294 18294 100% 0.0 99% KX446950.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 18294 18294 100% 0.0 99% KX087101.2 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 18294 18294 100% 0.0 99% KU870645.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 18291 18291 100% 0.0 99% KX702400.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 18291 18291 100% 0.0 99% KX377337.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 18285 18285 100% 0.0 99% KX056898.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 18285 18285 100% 0.0 99% KU955590.1 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 18282 18282 100% 0.0 99% KX766029.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 18282 18282 100% 0.0 99% KU820898.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 18274 18274 100% 0.0 99% KX766028.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 18273 18273 100% 0.0 99% KU740184.2 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 18273 18273 100% 0.0 99% KU761564.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 18267 18267 100% 0.0 99% KX117076.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 18258 18258 100% 0.0 99% KX185891.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 18258 18258 100% 0.0 99% KU963796.1 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 18254 18254 100% 0.0 99% KX253996.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 18254 18254 100% 0.0 99% KU955589.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 18254 18254 100% 0.0 99% KU820899.2 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 18251 18251 100% 0.0 99% KX266255.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 18249 18249 100% 0.0 99% KU866423.2 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 18236 18236 99% 0.0 99% KU940224.1 Select seq gb|KU744693.1| Zika virus isolate VE_Ganxian, complete genome 18123 18123 100% 0.0 99% KU744693.1 Select seq gb|KX827309.1| Zika virus isolate ZKA-16-291 polyprotein gene, complete cds 18101 18101 100% 0.0 99% KX827309.1 Select seq gb|KX813683.1| Zika virus isolate ZKA-16-097 polyprotein gene, complete cds 18096 18096 100% 0.0 99% KX813683.1 Select seq gb|KU681081.3| Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome 18024 18024 100% 0.0 99% KU681081.3 Select seq gb|KX694532.1| Zika virus strain ZIKV/Homo sapiens/THA/PLCal_ZV/2013, complete genome 17903 17903 100% 0.0 99% KX694532.1 Select seq gb|JN860885.1| Zika virus isolate FSS13025 polyprotein gene, partial cds 17726 17726 99% 0.0 98% JN860885.1 Link to comment Share on other sites More sharing options...
niman Posted October 8, 2016 Author Report Share Posted October 8, 2016 DOM_2016_BB-0180_SER match Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 18474 18474 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 18474 18474 100% 0.0 99% KU853012.1 Select seq gb|KX842449.2| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds 18462 18462 100% 0.0 99% KX842449.2 Select seq gb|KX922707.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds 18453 18453 100% 0.0 99% KX922707.1 Select seq gb|KX922703.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds 18447 18447 100% 0.0 99% KX922703.1 Select seq gb|KX838906.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds 18447 18447 100% 0.0 99% KX838906.2 Select seq gb|KX838905.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds 18447 18447 100% 0.0 99% KX838905.2 Select seq gb|KX832731.1| Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds 18447 18447 100% 0.0 99% KX832731.1 Select seq gb|KX922706.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds 18446 18446 100% 0.0 99% KX922706.1 Select seq gb|KX922704.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds 18444 18444 100% 0.0 99% KX922704.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 18444 18444 100% 0.0 99% KX673530.1 Select seq gb|KX838904.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds 18438 18438 100% 0.0 99% KX838904.2 Select seq gb|KX922705.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds 18437 18437 100% 0.0 99% KX922705.1 Select seq gb|KX922708.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds 18429 18429 100% 0.0 99% KX922708.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 18393 18393 100% 0.0 99% KX447510.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 18390 18390 100% 0.0 99% KX280026.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 18384 18384 100% 0.0 99% KX447512.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 18384 18384 100% 0.0 99% KX369547.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 18384 18384 100% 0.0 99% KU509998.3 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 18381 18381 100% 0.0 99% KJ776791.2 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 18381 18381 100% 0.0 99% KX447509.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 18381 18381 100% 0.0 99% KU991811.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 18381 18381 100% 0.0 99% KU729217.2 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 18375 18375 100% 0.0 99% KX447513.1 Select seq gb|KX811222.1| Zika virus isolate Brazil_2015_MG, complete genome 18372 18372 100% 0.0 99% KX811222.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 18372 18372 100% 0.0 99% KX197205.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 18372 18372 100% 0.0 99% KX447515.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 18372 18372 100% 0.0 99% KX447511.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 18372 18372 100% 0.0 99% KU321639.1 Select seq gb|KX879604.1| Zika virus isolate SN089, complete genome 18366 18366 100% 0.0 99% KX879604.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 18366 18366 100% 0.0 99% KX447514.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 18366 18366 100% 0.0 99% KX051563.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 18363 18363 100% 0.0 99% KX447516.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 18363 18363 100% 0.0 99% KU729218.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 18363 18363 100% 0.0 99% KU707826.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 18363 18363 100% 0.0 99% KU527068.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 18363 18363 100% 0.0 99% KU365779.1 Select seq gb|KX879603.1| Zika virus isolate SN062, complete genome 18357 18357 100% 0.0 99% KX879603.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 18357 18357 100% 0.0 99% KX262887.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 18357 18357 100% 0.0 99% KX197192.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 18357 18357 100% 0.0 99% KU926310.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 18357 18357 100% 0.0 99% KU926309.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 18354 18354 100% 0.0 99% KU940228.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 18348 18348 100% 0.0 99% KX694534.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 18348 18348 100% 0.0 99% KX198135.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 18348 18348 100% 0.0 99% KU501217.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 18348 18348 100% 0.0 99% KU365780.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 18345 18345 100% 0.0 99% KU647676.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 18345 18345 100% 0.0 99% KU501216.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 18345 18345 100% 0.0 99% KU365777.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 18339 18339 100% 0.0 99% KX447517.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 18339 18339 100% 0.0 99% KU758877.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 18339 18339 100% 0.0 99% KX247646.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 18339 18339 100% 0.0 99% KX156776.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 18336 18336 100% 0.0 99% KX520666.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 18336 18336 100% 0.0 99% KX156774.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 18336 18336 99% 0.0 99% KU497555.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 18330 18330 100% 0.0 99% KU820897.5 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 18330 18330 100% 0.0 99% KX247632.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 18330 18330 100% 0.0 99% KX156775.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 18330 18330 100% 0.0 99% KX087102.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 18330 18330 100% 0.0 99% KU365778.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 18330 18330 100% 0.0 99% KU312312.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 18327 18327 100% 0.0 99% KU922960.1 Select seq gb|KX856011.1| Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome 18321 18321 100% 0.0 99% KX856011.1 Select seq gb|KX806557.1| Zika virus isolate TS17-2016, complete genome 18321 18321 100% 0.0 99% KX806557.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 18321 18321 100% 0.0 99% KX548902.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 18321 18321 100% 0.0 99% KX446951.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 18321 18321 100% 0.0 99% KU937936.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 18321 18321 100% 0.0 99% KU922923.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 18321 18321 100% 0.0 99% KU501215.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 18318 18318 100% 0.0 99% KX601168.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 18318 18318 100% 0.0 99% KX446950.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 18318 18318 100% 0.0 99% KX087101.2 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 18318 18318 100% 0.0 99% KU870645.1 Select seq gb|KX893855.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-2/2016, complete genome 18316 18316 100% 0.0 99% KX893855.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 18312 18312 100% 0.0 99% KX702400.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 18312 18312 100% 0.0 99% KX377337.1 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 18303 18303 100% 0.0 99% KX766029.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 18303 18303 100% 0.0 99% KU820898.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 18300 18300 100% 0.0 99% KX056898.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 18300 18300 100% 0.0 99% KU955590.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 18296 18296 100% 0.0 99% KX766028.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 18294 18294 100% 0.0 99% KU740184.2 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 18294 18294 100% 0.0 99% KU761564.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 18291 18291 100% 0.0 99% KX117076.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 18282 18282 100% 0.0 99% KX185891.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 18282 18282 100% 0.0 99% KU963796.1 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 18276 18276 100% 0.0 99% KX253996.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 18276 18276 100% 0.0 99% KU955589.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 18276 18276 100% 0.0 99% KU820899.2 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 18273 18273 100% 0.0 99% KX266255.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 18273 18273 100% 0.0 99% KU866423.2 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 18258 18258 99% 0.0 99% KU940224.1 Select seq gb|KU744693.1| Zika virus isolate VE_Ganxian, complete genome 18137 18137 100% 0.0 99% KU744693.1 Select seq gb|KX827309.1| Zika virus isolate ZKA-16-291 polyprotein gene, complete cds 18114 18114 100% 0.0 99% KX827309.1 Select seq gb|KX813683.1| Zika virus isolate ZKA-16-097 polyprotein gene, complete cds 18101 18101 100% 0.0 99% KX813683.1 Select seq gb|KU681081.3| Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome 18047 18047 100% 0.0 99% KU681081.3 Select seq gb|KX694532.1| Zika virus strain ZIKV/Homo sapiens/THA/PLCal_ZV/2013, complete genome 17933 17933 100% 0.0 99% KX694532.1 Select seq gb|JN860885.1| Zika virus isolate FSS13025 polyprotein gene, partial cds 17748 17748 99% 0.0 98% JN860885.1 Link to comment Share on other sites More sharing options...
niman Posted October 11, 2016 Author Report Share Posted October 11, 2016 (edited) DOM_2016_BB-0127_SER matches Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 18474 18474 100% 0.0 99% KX198135.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 18465 18465 100% 0.0 99% KX156776.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 18462 18462 100% 0.0 99% KX156774.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 18462 18462 100% 0.0 99% KU647676.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 18456 18456 100% 0.0 99% KU820897.5 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 18456 18456 100% 0.0 99% KX247646.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 18456 18456 100% 0.0 99% KX156775.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 18456 18456 100% 0.0 99% KX087102.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 18444 18444 100% 0.0 99% KU922960.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 18438 18438 100% 0.0 99% KU922923.1 Select seq gb|KX893855.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-2/2016, complete genome 18433 18433 100% 0.0 99% KX893855.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 18429 18429 100% 0.0 99% KX702400.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 18429 18429 100% 0.0 99% KX548902.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 18411 18411 100% 0.0 99% KX447510.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 18408 18408 100% 0.0 99% KU991811.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 18402 18402 100% 0.0 99% KX447512.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 18402 18402 100% 0.0 99% KX369547.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 18402 18402 100% 0.0 99% KU509998.3 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 18399 18399 100% 0.0 99% KJ776791.2 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 18399 18399 100% 0.0 99% KX447509.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 18393 18393 100% 0.0 99% KX447513.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 18390 18390 100% 0.0 99% KX197205.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 18390 18390 100% 0.0 99% KX447515.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 18390 18390 100% 0.0 99% KX447511.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 18390 18390 100% 0.0 99% KX280026.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 18390 18390 100% 0.0 99% KU321639.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 18384 18384 100% 0.0 99% KX447514.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 18384 18384 100% 0.0 99% KX051563.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 18381 18381 100% 0.0 99% KX447516.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 18381 18381 100% 0.0 99% KU729218.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 18381 18381 100% 0.0 99% KU707826.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 18381 18381 100% 0.0 99% KU365779.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 18375 18375 100% 0.0 99% KX262887.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 18375 18375 100% 0.0 99% KX197192.1 Select seq gb|KX811222.1| Zika virus isolate Brazil_2015_MG, complete genome 18372 18372 100% 0.0 99% KX811222.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 18372 18372 99% 0.0 99% KU497555.1 Select seq gb|KX879604.1| Zika virus isolate SN089, complete genome 18366 18366 100% 0.0 99% KX879604.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 18366 18366 100% 0.0 99% KX694534.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 18366 18366 100% 0.0 99% KU758877.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 18366 18366 100% 0.0 99% KU926309.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 18366 18366 100% 0.0 99% KU365780.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 18363 18363 100% 0.0 99% KU940228.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 18363 18363 100% 0.0 99% KU365777.1 Select seq gb|KX879603.1| Zika virus isolate SN062, complete genome 18357 18357 100% 0.0 99% KX879603.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 18357 18357 100% 0.0 99% KU501217.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 18357 18357 100% 0.0 99% KU365778.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 18357 18357 100% 0.0 99% KU312312.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 18354 18354 100% 0.0 99% KU729217.2 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 18354 18354 100% 0.0 99% KU527068.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 18354 18354 100% 0.0 99% KU501216.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 18348 18348 100% 0.0 99% KX447517.1 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 18348 18348 100% 0.0 99% KX247632.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 18348 18348 100% 0.0 99% KU937936.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 18348 18348 100% 0.0 99% KU501215.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 18345 18345 100% 0.0 99% KX601168.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 18345 18345 100% 0.0 99% KX520666.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 18345 18345 100% 0.0 99% KX087101.2 Select seq gb|KX856011.1| Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome 18339 18339 100% 0.0 99% KX856011.1 Select seq gb|KX806557.1| Zika virus isolate TS17-2016, complete genome 18339 18339 100% 0.0 99% KX806557.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 18339 18339 100% 0.0 99% KX446951.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 18339 18339 100% 0.0 99% KX377337.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 18339 18339 100% 0.0 99% KU926310.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 18339 18339 100% 0.0 99% KU820898.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 18336 18336 100% 0.0 99% KX446950.1 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 18336 18336 100% 0.0 99% KU870645.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 18330 18330 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 18330 18330 100% 0.0 99% KU853012.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 18327 18327 100% 0.0 99% KX056898.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 18327 18327 100% 0.0 99% KU955590.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 18323 18323 100% 0.0 99% KX766028.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 18321 18321 100% 0.0 99% KU740184.2 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 18321 18321 100% 0.0 99% KU761564.1 Select seq gb|KX842449.2| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds 18318 18318 100% 0.0 99% KX842449.2 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 18312 18312 100% 0.0 99% KX766029.1 Select seq gb|KX922707.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds 18309 18309 100% 0.0 99% KX922707.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 18309 18309 100% 0.0 99% KX673530.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 18309 18309 100% 0.0 99% KX117076.1 Select seq gb|KX922706.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds 18305 18305 100% 0.0 99% KX922706.1 Select seq gb|KX922703.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds 18303 18303 100% 0.0 99% KX922703.1 Select seq gb|KX838906.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds 18303 18303 100% 0.0 99% KX838906.2 Select seq gb|KX838905.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds 18303 18303 100% 0.0 99% KX838905.2 Select seq gb|KX832731.1| Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds 18303 18303 100% 0.0 99% KX832731.1 Select seq gb|KX922704.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds 18300 18300 100% 0.0 99% KX922704.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 18300 18300 100% 0.0 99% KX185891.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 18300 18300 100% 0.0 99% KU963796.1 Select seq gb|KX838904.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds 18294 18294 100% 0.0 99% KX838904.2 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 18294 18294 100% 0.0 99% KX253996.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 18294 18294 100% 0.0 99% KU955589.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 18294 18294 100% 0.0 99% KU820899.2 Select seq gb|KX922705.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds 18292 18292 100% 0.0 99% KX922705.1 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 18291 18291 100% 0.0 99% KX266255.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 18291 18291 100% 0.0 99% KU866423.2 Select seq gb|KX922708.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds 18285 18285 100% 0.0 99% KX922708.1 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 18273 18273 99% 0.0 99% KU940224.1 Select seq gb|KU744693.1| Zika virus isolate VE_Ganxian, complete genome 18155 18155 100% 0.0 99% KU744693.1 Select seq gb|KX827309.1| Zika virus isolate ZKA-16-291 polyprotein gene, complete cds 18141 18141 100% 0.0 99% KX827309.1 Select seq gb|KX813683.1| Zika virus isolate ZKA-16-097 polyprotein gene, complete cds 18128 18128 100% 0.0 99% KX813683.1 Select seq gb|KU681081.3| Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome 18065 18065 100% 0.0 99% KU681081.3 Select seq gb|KX694532.1| Zika virus strain ZIKV/Homo sapiens/THA/PLCal_ZV/2013, complete genome 17957 17957 100% 0.0 99% KX694532.1 Select seq gb|JN860885.1| Zika virus isolate FSS13025 polyprotein gene, partial cds 17757 17757 99% 0.0 98% JN860885.1 Edited October 12, 2016 by niman Link to comment Share on other sites More sharing options...
niman Posted October 12, 2016 Author Report Share Posted October 12, 2016 DOM_2016_BB-0208_SER matches Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 18465 18465 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 18465 18465 100% 0.0 99% KU853012.1 Select seq gb|KX842449.2| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds 18462 18462 100% 0.0 99% KX842449.2 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 18453 18453 100% 0.0 99% KX673530.1 Select seq gb|KX922703.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds 18447 18447 100% 0.0 99% KX922703.1 Select seq gb|KX838905.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds 18447 18447 100% 0.0 99% KX838905.2 Select seq gb|KX832731.1| Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds 18447 18447 100% 0.0 99% KX832731.1 Select seq gb|KX922706.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds 18446 18446 100% 0.0 99% KX922706.1 Select seq gb|KX922707.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds 18444 18444 100% 0.0 99% KX922707.1 Select seq gb|KX922704.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds 18444 18444 100% 0.0 99% KX922704.1 Select seq gb|KX838906.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds 18438 18438 100% 0.0 99% KX838906.2 Select seq gb|KX838904.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds 18438 18438 100% 0.0 99% KX838904.2 Select seq gb|KX922705.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds 18428 18428 100% 0.0 99% KX922705.1 Select seq gb|KX922708.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds 18420 18420 100% 0.0 99% KX922708.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 18375 18375 100% 0.0 99% KX447510.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 18372 18372 100% 0.0 99% KX280026.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 18366 18366 100% 0.0 99% KX447512.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 18366 18366 100% 0.0 99% KX369547.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 18366 18366 100% 0.0 99% KU509998.3 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 18363 18363 100% 0.0 99% KJ776791.2 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 18363 18363 100% 0.0 99% KX447509.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 18363 18363 100% 0.0 99% KU991811.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 18363 18363 100% 0.0 99% KU729217.2 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 18357 18357 100% 0.0 99% KX447513.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 18357 18357 100% 0.0 99% KX051563.1 Select seq gb|KX811222.1| Zika virus isolate Brazil_2015_MG, complete genome 18354 18354 100% 0.0 99% KX811222.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 18354 18354 100% 0.0 99% KX197205.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 18354 18354 100% 0.0 99% KX447515.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 18354 18354 100% 0.0 99% KX447511.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 18354 18354 100% 0.0 99% KU527068.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 18354 18354 100% 0.0 99% KU321639.1 Select seq gb|KX879604.1| Zika virus isolate SN089, complete genome 18348 18348 100% 0.0 99% KX879604.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 18348 18348 100% 0.0 99% KX447514.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 18345 18345 100% 0.0 99% KX447516.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 18345 18345 100% 0.0 99% KU729218.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 18345 18345 100% 0.0 99% KU707826.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 18345 18345 100% 0.0 99% KU365779.1 Select seq gb|KX879603.1| Zika virus isolate SN062, complete genome 18339 18339 100% 0.0 99% KX879603.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 18339 18339 100% 0.0 99% KX262887.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 18339 18339 100% 0.0 99% KX197192.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 18339 18339 100% 0.0 99% KU926310.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 18339 18339 100% 0.0 99% KU926309.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 18336 18336 100% 0.0 99% KU940228.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 18330 18330 100% 0.0 99% KX694534.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 18330 18330 100% 0.0 99% KX198135.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 18330 18330 100% 0.0 99% KU501217.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 18330 18330 100% 0.0 99% KU365780.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 18327 18327 100% 0.0 99% KU647676.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 18327 18327 100% 0.0 99% KU501216.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 18327 18327 100% 0.0 99% KU365777.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 18321 18321 100% 0.0 99% KX447517.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 18321 18321 100% 0.0 99% KU758877.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 18321 18321 100% 0.0 99% KX247646.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 18321 18321 100% 0.0 99% KX156776.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 18318 18318 100% 0.0 99% KX520666.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 18318 18318 100% 0.0 99% KX156774.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 18318 18318 99% 0.0 99% KU497555.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 18312 18312 100% 0.0 99% KU820897.5 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 18312 18312 100% 0.0 99% KX247632.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 18312 18312 100% 0.0 99% KX156775.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 18312 18312 100% 0.0 99% KX087102.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 18312 18312 100% 0.0 99% KU365778.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 18312 18312 100% 0.0 99% KU312312.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 18309 18309 100% 0.0 99% KU922960.1 Select seq gb|KX856011.1| Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome 18303 18303 100% 0.0 99% KX856011.1 Select seq gb|KX806557.1| Zika virus isolate TS17-2016, complete genome 18303 18303 100% 0.0 99% KX806557.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 18303 18303 100% 0.0 99% KX548902.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 18303 18303 100% 0.0 99% KX446951.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 18303 18303 100% 0.0 99% KU937936.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 18303 18303 100% 0.0 99% KU922923.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 18303 18303 100% 0.0 99% KU501215.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 18300 18300 100% 0.0 99% KX601168.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 18300 18300 100% 0.0 99% KX446950.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 18300 18300 100% 0.0 99% KX087101.2 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 18300 18300 100% 0.0 99% KU870645.1 Select seq gb|KX893855.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-2/2016, complete genome 18298 18298 100% 0.0 99% KX893855.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 18294 18294 100% 0.0 99% KX702400.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 18294 18294 100% 0.0 99% KX377337.1 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 18285 18285 100% 0.0 99% KX766029.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 18285 18285 100% 0.0 99% KU820898.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 18282 18282 100% 0.0 99% KX056898.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 18282 18282 100% 0.0 99% KU955590.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 18278 18278 100% 0.0 99% KX766028.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 18276 18276 100% 0.0 99% KU740184.2 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 18276 18276 100% 0.0 99% KU761564.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 18273 18273 100% 0.0 99% KX117076.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 18264 18264 100% 0.0 99% KX185891.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 18264 18264 100% 0.0 99% KU963796.1 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 18258 18258 100% 0.0 99% KX253996.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 18258 18258 100% 0.0 99% KU955589.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 18258 18258 100% 0.0 99% KU820899.2 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 18254 18254 100% 0.0 99% KX266255.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 18254 18254 100% 0.0 99% KU866423.2 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 18240 18240 99% 0.0 99% KU940224.1 Select seq gb|KU744693.1| Zika virus isolate VE_Ganxian, complete genome 18119 18119 100% 0.0 99% KU744693.1 Select seq gb|KX827309.1| Zika virus isolate ZKA-16-291 polyprotein gene, complete cds 18096 18096 100% 0.0 99% KX827309.1 Select seq gb|KX813683.1| Zika virus isolate ZKA-16-097 polyprotein gene, complete cds 18083 18083 100% 0.0 99% KX813683.1 Select seq gb|KU681081.3| Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome 18029 18029 100% 0.0 99% KU681081.3 Select seq gb|KX694532.1| Zika virus strain ZIKV/Homo sapiens/THA/PLCal_ZV/2013, complete genome 17915 17915 100% 0.0 99% KX694532.1 Select seq gb|KU955593.1| Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome 17732 17732 100% 0.0 98% KU955593.1 Select seq gb|JN860885.1| Zika virus isolate FSS13025 polyprotein gene, partial cds 17730 17730 99% 0.0 98% JN860885.1 Select seq gb|KF993678.1| Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds 17685 17685 98% 0.0 99% KF993678.1 Select seq gb|EU545988.1| Zika virus polyprotein gene, complete cds 17576 17576 100% 0.0 98% EU545988.1 Select seq gb|KU681082.3| Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome 17429 17429 100% 0.0 98% KU681082.3 Select seq gb|KX601167.1| Zika virus strain ZIKV/Aedes sp./MYS/P6-740/1966, complete genome 16401 16401 100% 0.0 95% KX601167.1 Select seq gb|HQ234499.1| Zika virus isolate P6-740 polyprotein gene, partial cds 16393 16393 99% 0.0 95% HQ234499.1 Select seq gb|KX694533.1| Zika virus strain ZIKV/Aedes aegypti/MYS/P6-740/1966, complete genome 16392 16392 100% 0.0 95% KX694533.1 Select seq gb|KX377336.1| Zika virus strain P6-740, complete genome 16388 16388 100% 0.0 95% KX377336.1 Select seq gb|KX447518.1| Zika virus isolate 1_0117_PF polyprotein gene, partial cds 16220 16220 88% 0.0 99% KX447518.1 Select seq gb|KX830960.1| Zika virus culture ATCC:VR-84 isolate MR776, complete genome 13322 13322 100% 0.0 89% KX830960.1 Select seq gb|KU720415.1| Zika virus strain MR 766 polyprotein gene, complete cds 13322 13322 100% 0.0 89% KU720415.1 Select seq gb|HQ234498.1| Zika virus isolate MR_766 polyprotein gene, partial cds 13317 13317 99% 0.0 89% HQ234498.1 Select seq gb|DQ859059.1| Zika virus strain MR 766 polyprotein gene, complete cds 13315 13315 100% 0.0 89% DQ859059.1 Select seq gb|KX377335.1| Zika virus strain MR-766, complete genome 13308 13308 100% 0.0 89% KX377335.1 Select seq gb|KF383115.1| Zika virus strain ArB1362 polyprotein gene, complete cds 13306 13306 100% 0.0 89% KF383115.1 Select seq gb|KF383119.1| Zika virus strain ArD158084 polyprotein gene, complete cds 13304 13304 100% 0.0 89% KF383119.1 Select seq dbj|LC002520.1| Zika virus genomic RNA, complete genome, strain: MR766-NIID 13299 13299 100% 0.0 89% LC002520.1 Select seq gb|KF268949.1| Zika virus isolate ARB15076 polyprotein gene, complete cds 13293 13293 100% 0.0 89% KF268949.1 Select seq gb|KF268948.1| Zika virus isolate ARB13565 polyprotein gene, complete cds 13293 13293 100% 0.0 89% KF268948.1 Select seq gb|KF268950.1| Zika virus isolate ARB7701 polyprotein gene, complete cds 13286 13286 100% 0.0 89% KF268950.1 Select seq gb|KX601169.1| Zika virus strain ZIKV/Macaca mulatta/UGA/MR-766/1947, complete genome 13283 13283 100% 0.0 89% KX601169.1 Select seq gb|KU963573.1| Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds 13283 13283 100% 0.0 89% KU963573.1 Select seq gb|KU955594.1| Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome 13283 13283 100% 0.0 89% KU955594.1 Select seq gb|KU955595.1| Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome 13281 13281 100% 0.0 89% KU955595.1 Select seq gb|KU955592.1| Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome 13272 13272 100% 0.0 89% KU955592.1 Select seq gb|KX198134.1| Zika virus strain ZIKV/Aedes africanus/SEN/DAK-AR-41524_A1C1-V2/1984, complete genome 13259 13742 100% 0.0 89% KX198134.1 Select seq gb|KU955591.1| Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome 13254 13254 100% 0.0 89% KU955591.1 Select seq gb|KF383116.1| Zika virus strain ArD7117 polyprotein gene, complete cds 13248 13248 100% 0.0 89% KF383116.1 Select seq gb|AY632535.2| Zika virus strain MR 766, complete genome 13241 13241 100% 0.0 89% AY632535.2 Select seq gb|HQ234501.1| Zika virus isolate ArD_41519 polyprotein gene, partial cds 13223 13223 99% 0.0 89% HQ234501.1 Select seq gb|KX601166.1| Zika virus strain ZIKV/Aedes africanus/SEN/DakAr41524/1984, complete genome 13198 13198 100% 0.0 88% KX601166.1 Select seq gb|KU963574.1| Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds 13176 13278 100% 0.0 88% KU963574.1 Select seq gb|HQ234500.1| Zika virus isolate IbH_30656 polyprotein gene, partial cds 13174 13174 99% 0.0 88% HQ234500.1 Select seq gb|KF383117.1| Zika virus strain ArD128000 polyprotein gene, complete cds 13169 13169 100% 0.0 88% KF383117.1 Select seq gb|KF383118.1| Zika virus strain ArD157995 polyprotein gene, complete cds 12981 13049 100% 0.0 88% KF383118.1 Select seq gb|KF383121.1| Zika virus strain ArD158095 polyprotein gene, partial cds 12909 12909 97% 0.0 89% KF383121.1 Select seq gb|KX447520.1| Zika virus isolate 1_0016_PF polyprotein gene, partial cds 11517 15828 86% 0.0 99% KX447520.1 Select seq gb|KX576684.1| Zika virus vector pZIKV-ICD, complete sequence 10926 18371 100% 0.0 99% KX576684.1 Select seq gb|KF383120.1| Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence 10846 10846 97% 0.0 84% KF383120.1 Select seq gb|KX447519.1| Zika virus isolate 1_0199_PF polyprotein gene, partial cds 10006 16097 87% 0.0 99% KX447519.1 Select seq gb|KX447521.1| Zika virus isolate 1_0080_PF polyprotein gene, partial cds 9858 14979 81% 0.0 99% KX447521.1 Select seq gb|KX830961.1| Synthetic construct, complete sequence 9393 13329 100% 0.0 89% KX830961.1 Select seq gb|KU940227.1| Zika virus isolate Bahia08, partial genome 5034 14400 87% 0.0 95% KU940227.1 Select seq gb|KX212103.1| Zika virus isolate BRZIKV_AB_ES polyprotein gene, partial cds 5012 5012 27% 0.0 99% KX212103.1 Select seq gb|KU758869.1| Zika virus isolate 05211 polyprotein gene, partial cds 4985 4985 26% 0.0 99% KU758869.1 Select seq gb|KU758875.1| Zika virus isolate 15042 polyprotein gene, partial cds 4978 4978 27% 0.0 99% KU758875.1 Select seq gb|KU758871.1| Zika virus isolate 17170 polyprotein gene, partial cds 4974 4974 27% 0.0 99% KU758871.1 Select seq gb|KU758870.1| Zika virus isolate 17160 polyprotein gene, partial cds 4967 4967 27% 0.0 99% KU758870.1 Select seq gb|KU312314.1| Zika virus isolate Z1106031 polyprotein gene, partial cds 4967 4967 27% 0.0 99% KU312314.1 Select seq gb|KU758873.1| Zika virus isolate 18246 polyprotein gene, partial cds 4965 4965 27% 0.0 99% KU758873.1 Select seq gb|KU758868.1| Zika virus isolate 27229 polyprotein gene, partial cds 4956 4956 26% 0.0 99% KU758868.1 Select seq gb|KU758872.1| Zika virus isolate 01170 polyprotein gene, partial cds 4953 4953 27% 0.0 99% KU758872.1 Select seq gb|KU758874.1| Zika virus isolate 20114 polyprotein gene, partial cds 4951 4951 26% 0.0 99% KU758874.1 Select seq gb|KU758876.1| Zika virus isolate 21068 polyprotein gene, partial cds 4942 4942 27% 0.0 99% KU758876.1 Select seq gb|KU312313.1| Zika virus isolate Z1106032 polyprotein gene, partial cds 4940 4940 27% 0.0 99% KU312313.1 Select seq gb|KU646828.1| Zika virus isolate Si322 polyprotein gene, partial cds 4641 4641 25% 0.0 99% KU646828.1 Select seq gb|KU646827.1| Zika virus isolate Si323 polyprotein gene, partial cds 4632 4632 25% 0.0 99% KU646827.1 Select seq gb|KX101060.1| Zika virus isolate Bahia02, partial genome 4208 13276 75% 0.0 95% KX101060.1 Select seq gb|KU312315.1| Zika virus isolate Z1106027 polyprotein gene, partial cds 3425 3425 18% 0.0 99% KU312315.1 Select seq gb|KU740199.1| Zika virus isolate VE_Ganxian2016 polyprotein gene, partial cds 3214 3214 17% 0.0 99% KU740199.1 Select seq gb|KX101066.1| Zika virus isolate Bahia01, partial genome 3112 13074 74% 0.0 99% KX101066.1 Select seq gb|DQ859064.1| Spondweni virus strain SM-6 V-1 polyprotein gene, complete cds 2874 4206 95% 0.0 71% DQ859064.1 Select seq gb|KX216638.1| Zika virus isolate ESS23-2015 envelope protein gene, partial cds 2704 2704 14% 0.0 99% KX216638.1 Select seq gb|KX216637.1| Zika virus isolate GS29-2016 envelope protein gene, partial cds 2704 2704 14% 0.0 99% KX216637.1 Select seq gb|KX216635.1| Zika virus isolate TS17-2016 envelope protein gene, partial cds 2700 2700 14% 0.0 99% KX216635.1 Select seq gb|KX216634.1| Zika virus isolate TS14-2016 envelope protein gene, partial cds 2700 2700 14% 0.0 99% KX216634.1 Select seq gb|KX380262.1| Zika virus isolate MS10-2016 envelope protein gene, partial cds 2695 2695 14% 0.0 99% KX380262.1 Select seq gb|KX216632.1| Zika virus isolate SIS58-2015 envelope protein gene, partial cds 2695 2695 14% 0.0 99% KX216632.1 Select seq gb|KX380263.1| Zika virus isolate FS92-2016 envelope protein gene, partial cds 2691 2691 14% 0.0 99% KX380263.1 Select seq gb|KX216640.1| Zika virus isolate CKS63-2014 envelope protein gene, partial cds 2691 2691 14% 0.0 99% KX216640.1 Select seq gb|KX216636.1| Zika virus isolate SS27-2016 envelope protein gene, partial cds 2691 2691 14% 0.0 99% KX216636.1 Select seq gb|KX216633.1| Zika virus isolate VS51-2016 envelope protein gene, partial cds 2686 2686 14% 0.0 99% KX216633.1 Select seq gb|KJ634273.1| Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds 2686 2686 14% 0.0 99% KJ634273.1 Select seq gb|KX928077.1| Zika virus isolate HN16 polyprotein gene, partial cds 2682 2682 14% 0.0 99% KX928077.1 Select seq dbj|LC171327.1| Zika virus gene for polyprotein, partial cds, strain: ZIKV/Hu/Chiba/S36/2016 2682 2682 14% 0.0 99% LC171327.1 Select seq gb|KX216639.1| Zika virus isolate SS57-2016 envelope protein gene, partial cds 2673 2673 14% 0.0 99% KX216639.1 Select seq gb|KX101064.1| Zika virus isolate Bahia11, partial genome 2268 10757 65% 0.0 92% KX101064.1 Select seq gb|KX867786.1| Zika virus isolate D304 polyprotein gene, partial cds 2192 2192 12% 0.0 97% KX867786.1 Select seq gb|KU686218.1| Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds 2051 2051 11% 0.0 99% KU686218.1 Select seq gb|KU179098.1| Zika virus isolate JMB-185 nonstructural protein 5 gene, partial cds 2017 2017 11% 0.0 99% KU179098.1 Select seq gb|KU886298.1| Zika virus isolate MN NS5 gene, partial cds 1862 1862 10% 0.0 99% KU886298.1 Select seq gb|KX101061.1| Zika virus isolate Bahia03, partial genome 1840 13887 78% 0.0 99% KX101061.1 Select seq gb|KX059014.1| Zika virus isolate Haiti/1230/2014 NS5 gene, partial cds 1833 1833 9% 0.0 99% KX059014.1 Select seq gb|KX059013.1| Zika virus isolate Haiti/1227/2014 NS5 gene, partial cds 1833 1833 9% 0.0 99% KX059013.1 Select seq gb|KM078936.1| Zika virus strain CHI1410214 NS5 protein gene, partial cds 1746 1746 9% 0.0 99% KM078936.1 Select seq gb|KM078961.1| Zika virus strain CHI2612114 NS5 protein gene, partial cds 1745 1745 9% 0.0 99% KM078961.1 Select seq gb|KM078930.1| Zika virus strain CHI2283714 NS5 protein gene, partial cds 1743 1743 9% 0.0 99% KM078930.1 Select seq gb|KM078971.1| Zika virus strain CHI2613014 NS5 protein gene, partial cds 1739 1739 9% 0.0 99% KM078971.1 Select seq gb|KM078970.1| Zika virus strain CHI2490414 NS5 protein gene, partial cds 1739 1739 9% 0.0 99% KM078970.1 Select seq gb|KM078933.1| Zika virus strain CHI1058514 NS5 protein gene, partial cds 1739 1739 9% 0.0 99% KM078933.1 Select seq gb|KM078929.1| Zika virus strain CHI1805214 NS5 protein gene, partial cds 1737 1737 9% 0.0 99% KM078929.1 Select seq gb|KX377120.1| Zika virus isolate SP54-2016 nonstructural protein 5 gene, partial cds 1694 1694 9% 0.0 99% KX377120.1 Select seq gb|KX173841.1| Zika virus isolate 16Z11 envelope protein gene, partial cds 1658 1658 9% 0.0 99% KX173841.1 Select seq gb|KX173840.1| Zika virus isolate 16Z10 envelope protein gene, partial cds 1658 1658 9% 0.0 99% KX173840.1 Select seq gb|KJ873160.1| Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds 1597 1597 8% 0.0 99% KJ873160.1 Select seq gb|KX173843.1| Zika virus isolate 16Z62 envelope protein gene, partial cds 1526 1526 8% 0.0 99% KX173843.1 Select seq gb|KX173844.1| Zika virus isolate 16Z62 envelope protein gene, partial cds 1516 1516 8% 0.0 99% KX173844.1 Select seq gb|KJ873161.1| Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds 1415 1415 7% 0.0 99% KJ873161.1 Select seq gb|KM851039.1| Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds 1382 1382 7% 0.0 99% KM851039.1 Select seq gb|KU985087.1| Zika virus isolate MEX/InDRE/Zika-2/2015 nonstructural protein 5 gene, partial cds 1348 1348 7% 0.0 99% KU985087.1 Select seq gb|KM851038.1| Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds 1346 1346 7% 0.0 98% KM851038.1 Select seq gb|KU556802.1| Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds 1342 1342 7% 0.0 99% KU556802.1 Select seq gb|KU724096.1| Zika virus isolate 259249_2015_Panama NS5B gene, partial cds 1301 1301 7% 0.0 99% KU724096.1 Select seq gb|AF013415.1| Zika virus strain MR-766 NS5 protein (NS5) gene, partial cds 1301 1301 10% 0.0 88% AF013415.1 Select seq gb|KT200609.1| Zika virus isolate BR/949/15 NS5 gene, partial cds 1245 1245 6% 0.0 99% KT200609.1 Select seq gb|KU232300.1| Zika virus isolate 067ZV_PEBR15 NS5 protein gene, partial cds 1234 1234 6% 0.0 99% KU232300.1 Select seq gb|KU232290.1| Zika virus isolate 036ZV_PEBR15 NS5 protein gene, partial cds 1225 1225 6% 0.0 99% KU232290.1 Select seq gb|KU232297.1| Zika virus isolate 049ZV_PEBR15 NS5 protein gene, partial cds 1223 1223 6% 0.0 99% KU232297.1 Select seq gb|KU232294.1| Zika virus isolate 061ZV_PEBR15 NS5 protein gene, partial cds 1216 1216 6% 0.0 99% KU232294.1 Select seq gb|KU232292.1| Zika virus isolate 054ZV_PEBR15 NS5 protein gene, partial cds 1213 1213 6% 0.0 99% KU232292.1 Select seq gb|KU232298.1| Zika virus isolate 050ZV_PEBR15 NS5 protein gene, partial cds 1209 1209 6% 0.0 99% KU232298.1 Select seq gb|KU232293.1| Zika virus isolate 057ZV_PEBR15 NS5 protein gene, partial cds 1207 1207 6% 0.0 99% KU232293.1 Select seq gb|KU232296.1| Zika virus isolate 045ZV_PEBR15 NS5 protein gene, partial cds 1205 1205 6% 0.0 99% KU232296.1 Select seq gb|KU232295.1| Zika virus isolate 068ZV_PEBR15 NS5 protein gene, partial cds 1202 1202 6% 0.0 99% KU232295.1 Select seq gb|KU232288.1| Zika virus isolate 001ZV_PEBR15 NS5 protein gene, partial cds 1191 1191 6% 0.0 99% KU232288.1 Select seq gb|KU232289.1| Zika virus isolate 020ZV_PEBR15 NS5 protein gene, partial cds 1187 1187 6% 0.0 99% KU232289.1 Select seq gb|KX101063.1| Zika virus isolate Bahia05, partial genome 1186 7409 42% 0.0 99% KX101063.1 Select seq gb|KU232299.1| Zika virus isolate 015ZV_PEBR15 NS5 protein gene, partial cds 1184 1184 6% 0.0 99% KU232299.1 Select seq gb|KU232291.1| Zika virus isolate 051ZV_PEBR15 NS5 protein gene, partial cds 1180 1180 6% 0.0 99% KU232291.1 Select seq gb|KU724097.1| Zika virus isolate 259250_2015_Panama NS5B gene, partial cds 1178 1178 6% 0.0 100% KU724097.1 Select seq gb|KX101065.1| Zika virus isolate Bahia15, partial genome 1171 7762 46% 0.0 99% KX101065.1 Select seq gb|KU724098.1| Zika virus isolate 259060_2015_Panama NS5B gene, partial cds 1166 1166 6% 0.0 99% KU724098.1 Select seq gb|KU758878.1| Zika virus polyprotein gene, partial cds 1133 1133 6% 0.0 99% KU758878.1 Select seq gb|KU724099.1| Zika virus isolate 259032_2015_Panama NS5B gene, partial cds 1101 1101 5% 0.0 99% KU724099.1 Select seq gb|KF270886.1| Zika virus strain CCB-870 envelope glycoprotein gene, partial cds 1081 1081 8% 0.0 89% KF270886.1 Select seq gb|KX101062.1| Zika virus isolate Bahia04, partial genome 1054 7321 41% 0.0 97% KX101062.1 Select seq gb|AF372422.1|AF372422 Zika virus envelope protein (E) gene, partial cds 1023 1023 8% 0.0 87% AF372422.1 Select seq gb|KU867812.1| Zika virus isolate Jiangxi.CHN/01/2016 nonstructural protein 5 gene, partial cds 1012 1012 5% 0.0 99% KU867812.1 Link to comment Share on other sites More sharing options...
niman Posted October 12, 2016 Author Report Share Posted October 12, 2016 DOM_2016_BB-0216_SER match Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KX842449.2| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds 5434 16687 93% 0.0 99% KX842449.2 Select seq gb|KX838905.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds 5434 16678 93% 0.0 99% KX838905.2 Select seq gb|KX832731.1| Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds 5434 16672 93% 0.0 99% KX832731.1 Select seq gb|KX922706.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds 5433 16670 93% 0.0 99% KX922706.1 Select seq gb|KX922703.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds 5431 16678 93% 0.0 99% KX922703.1 Select seq gb|KX838904.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds 5427 16663 93% 0.0 99% KX838904.2 Select seq gb|KX922704.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds 5425 16674 93% 0.0 99% KX922704.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 5425 16687 93% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 5424 16685 93% 0.0 99% KU853012.1 Select seq gb|KX922707.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds 5416 16663 93% 0.0 99% KX922707.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 5416 16660 93% 0.0 99% KX673530.1 Select seq gb|KX838906.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds 5413 16661 93% 0.0 99% KX838906.2 Select seq gb|KX922708.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds 5407 16645 93% 0.0 98% KX922708.1 Select seq gb|KX922705.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds 5405 16649 93% 0.0 98% KX922705.1 Select seq gb|KX447518.1| Zika virus isolate 1_0117_PF polyprotein gene, partial cds 5404 14660 82% 0.0 98% KX447518.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 5404 16609 93% 0.0 98% KX447510.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 5404 16607 93% 0.0 98% KX280026.1 Select seq gb|KX879604.1| Zika virus isolate SN089, complete genome 5398 16587 93% 0.0 98% KX879604.1 Select seq gb|KX811222.1| Zika virus isolate Brazil_2015_MG, complete genome 5398 16589 93% 0.0 98% KX811222.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 5398 16607 93% 0.0 98% KX447512.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 5398 16609 93% 0.0 98% KU509998.3 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 5398 16575 93% 0.0 98% KU926310.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 5398 16584 93% 0.0 98% KU729218.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 5398 16578 93% 0.0 98% KU707826.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 5398 16578 93% 0.0 98% KU365779.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 5398 16596 93% 0.0 98% KU321639.1 Select seq gb|KX879603.1| Zika virus isolate SN062, complete genome 5395 16580 93% 0.0 98% KX879603.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 5395 16593 93% 0.0 98% KX197205.1 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 5395 16604 93% 0.0 98% KJ776791.2 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 5395 16587 93% 0.0 98% KX447515.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 5395 16604 93% 0.0 98% KX369547.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 5395 16569 93% 0.0 98% KU940228.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 5395 16593 93% 0.0 98% KU729217.2 Select seq gb|KX806557.1| Zika virus isolate TS17-2016, complete genome 5389 16539 93% 0.0 98% KX806557.1 Select seq gb|KX447521.1| Zika virus isolate 1_0080_PF polyprotein gene, partial cds 5389 13607 76% 0.0 98% KX447521.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 5389 16587 93% 0.0 98% KX447514.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 5389 16593 93% 0.0 98% KX447513.1 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 5389 16596 93% 0.0 98% KX447509.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 5389 16582 93% 0.0 98% KX197192.1 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 5389 16474 93% 0.0 98% KU940224.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 5389 16566 93% 0.0 98% KU365780.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 5389 16560 93% 0.0 98% KU365777.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 5386 16560 93% 0.0 98% KX447517.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 5386 16580 93% 0.0 98% KX447516.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 5386 16569 93% 0.0 98% KX198135.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 5380 16587 93% 0.0 98% KX447511.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 5380 16551 93% 0.0 98% KX520666.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 5380 16591 93% 0.0 98% KX051563.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 5380 16569 93% 0.0 98% KU501217.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 5380 16566 93% 0.0 98% KU501216.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 5377 16535 93% 0.0 98% KX601168.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 5377 16575 93% 0.0 98% KX262887.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 5377 16535 93% 0.0 98% KX087101.2 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 5377 16602 93% 0.0 98% KU991811.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 5377 16526 93% 0.0 98% KU955590.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 5377 16575 93% 0.0 98% KU926309.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 5377 16557 93% 0.0 98% KU497555.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 5377 16541 93% 0.0 98% KU501215.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 5377 16557 93% 0.0 98% KU312312.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 5371 16530 93% 0.0 98% KX377337.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 5371 16555 93% 0.0 98% KU758877.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 5371 16557 93% 0.0 98% KX156776.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 5371 16546 93% 0.0 98% KX156775.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 5371 16515 93% 0.0 98% KX117076.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 5371 16524 93% 0.0 98% KX056898.1 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 5371 16535 93% 0.0 98% KU870645.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 5371 16587 93% 0.0 98% KU527068.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 5371 16560 93% 0.0 98% KU647676.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 5371 16546 93% 0.0 98% KU365778.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 5368 16548 93% 0.0 98% KU820897.5 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 5368 16571 93% 0.0 98% KX694534.1 Select seq gb|KX447520.1| Zika virus isolate 1_0016_PF polyprotein gene, partial cds 5368 14254 80% 0.0 98% KX447520.1 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 5368 16503 93% 0.0 98% KX253996.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 5368 16559 93% 0.0 98% KX247646.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 5368 16506 93% 0.0 98% KX185891.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 5368 16553 93% 0.0 98% KX156774.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 5368 16548 93% 0.0 98% KX087102.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 5368 16506 93% 0.0 98% KU963796.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 5368 16503 93% 0.0 98% KU955589.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 5368 16542 93% 0.0 98% KU922960.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 5368 16539 93% 0.0 98% KU922923.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 5368 16503 93% 0.0 98% KU820899.2 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 5364 16499 93% 0.0 98% KX266255.1 Select seq gb|KX893855.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-2/2016, complete genome 5362 16533 93% 0.0 98% KX893855.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 5362 16530 93% 0.0 98% KX702400.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 5362 16497 93% 0.0 98% KU866423.2 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 5362 16551 93% 0.0 98% KX247632.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 5362 16548 93% 0.0 98% KU937936.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 5362 16524 93% 0.0 98% KU820898.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 5362 16521 93% 0.0 98% KU740184.2 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 5362 16521 93% 0.0 98% KU761564.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 5359 16544 93% 0.0 98% KX446951.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 5359 16535 93% 0.0 98% KX446950.1 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 5353 16521 93% 0.0 98% KX766029.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 5353 16521 93% 0.0 98% KX766028.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 5353 16546 93% 0.0 98% KX548902.1 Select seq gb|KX856011.1| Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome 5350 16539 93% 0.0 98% KX856011.1 Select seq gb|KU744693.1| Zika virus isolate VE_Ganxian, complete genome 5335 16389 93% 0.0 98% KU744693.1 Select seq gb|KX813683.1| Zika virus isolate ZKA-16-097 polyprotein gene, complete cds 5290 16339 93% 0.0 98% KX813683.1 Select seq gb|KX827309.1| Zika virus isolate ZKA-16-291 polyprotein gene, complete cds 5286 16349 93% 0.0 98% KX827309.1 Link to comment Share on other sites More sharing options...
niman Posted October 12, 2016 Author Report Share Posted October 12, 2016 DOM_2016_BB-0269_SER match Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 4841 15797 90% 0.0 97% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 4841 15799 90% 0.0 97% KU853012.1 Select seq gb|KX842449.2| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds 4832 15790 90% 0.0 97% KX842449.2 Select seq gb|KX922707.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds 4828 15775 90% 0.0 97% KX922707.1 Select seq gb|KX922706.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds 4828 15775 90% 0.0 97% KX922706.1 Select seq gb|KX922704.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds 4828 15772 90% 0.0 97% KX922704.1 Select seq gb|KX832731.1| Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds 4828 15781 90% 0.0 97% KX832731.1 Select seq gb|KX838904.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds 4825 15765 90% 0.0 97% KX838904.2 Select seq gb|KX922703.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds 4823 15777 90% 0.0 97% KX922703.1 Select seq gb|KX838905.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds 4823 15775 90% 0.0 97% KX838905.2 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 4823 15765 90% 0.0 97% KX673530.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 4819 15700 90% 0.0 97% KU991811.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 4814 15687 90% 0.0 97% KX051563.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 4814 15700 90% 0.0 97% KU509998.3 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 4814 15673 90% 0.0 97% KU647676.1 Select seq gb|KX838906.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds 4810 15757 90% 0.0 97% KX838906.2 Select seq gb|KX811222.1| Zika virus isolate Brazil_2015_MG, complete genome 4810 15709 90% 0.0 97% KX811222.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 4810 15696 90% 0.0 97% KX197205.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 4810 15664 90% 0.0 97% KX694534.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 4810 15723 90% 0.0 97% KX280026.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 4810 15664 90% 0.0 97% KX247646.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 4810 15687 90% 0.0 97% KU926310.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 4810 15687 90% 0.0 97% KU321639.1 Select seq gb|KX922708.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds 4805 15739 90% 0.0 97% KX922708.1 Select seq gb|KX922705.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds 4805 15745 90% 0.0 97% KX922705.1 Select seq gb|KX893855.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-2/2016, complete genome 4805 15644 90% 0.0 97% KX893855.1 Select seq gb|KX856011.1| Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome 4805 15636 90% 0.0 97% KX856011.1 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 4805 15694 90% 0.0 97% KJ776791.2 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 4805 15655 90% 0.0 97% KU820897.5 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 4805 15640 90% 0.0 97% KX702400.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 4805 15698 90% 0.0 97% KX447512.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 4805 15692 90% 0.0 97% KX447511.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 4805 15703 90% 0.0 97% KX447510.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 4805 15678 90% 0.0 97% KX548902.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 4805 15703 90% 0.0 97% KX369547.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 4805 15658 90% 0.0 97% KU758877.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 4805 15669 90% 0.0 97% KX262887.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 4805 15671 90% 0.0 97% KX198135.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 4805 15673 90% 0.0 97% KX197192.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 4805 15664 90% 0.0 97% KX156776.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 4805 15655 90% 0.0 97% KX156775.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 4805 15662 90% 0.0 97% KX156774.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 4805 15655 90% 0.0 97% KX087102.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 4805 15658 90% 0.0 97% KU312312.1 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 4801 15618 90% 0.0 97% KX766029.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 4801 15664 90% 0.0 97% KX447517.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 4801 15696 90% 0.0 97% KX447515.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 4801 15683 90% 0.0 97% KX447514.1 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 4801 15696 90% 0.0 97% KX447509.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 4801 15638 90% 0.0 97% KX446950.1 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 4801 15642 90% 0.0 97% KU870645.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 4801 15671 90% 0.0 97% KU926309.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 4801 15655 90% 0.0 97% KU922960.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 4801 15655 90% 0.0 97% KU922923.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 4801 15682 90% 0.0 97% KU527068.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 4800 15698 90% 0.0 97% KU729217.2 Select seq gb|KX879604.1| Zika virus isolate SN089, complete genome 4796 15682 90% 0.0 97% KX879604.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 4796 15687 90% 0.0 97% KX447516.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 4796 15636 90% 0.0 97% KX601168.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 4796 15667 90% 0.0 97% KX520666.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 4796 15640 90% 0.0 97% KX446951.1 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 4796 15646 90% 0.0 97% KX247632.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 4796 15636 90% 0.0 97% KX087101.2 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 4796 15647 90% 0.0 97% KU937936.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 4796 15676 90% 0.0 97% KU940228.1 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 4796 15650 89% 0.0 97% KU940224.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 4796 15665 90% 0.0 97% KU497555.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 4796 15658 90% 0.0 97% KU501217.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 4796 15642 90% 0.0 97% KU501215.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 4796 15647 90% 0.0 97% KU365778.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 4792 15692 90% 0.0 97% KX447513.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 4792 15633 90% 0.0 97% KX377337.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 4792 15633 90% 0.0 97% KU820898.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 4792 15680 90% 0.0 97% KU707826.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 4792 15655 90% 0.0 97% KU501216.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 4792 15671 90% 0.0 97% KU365780.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 4792 15680 90% 0.0 97% KU365779.1 Select seq gb|KX879603.1| Zika virus isolate SN062, complete genome 4787 15671 90% 0.0 97% KX879603.1 Select seq gb|KX806557.1| Zika virus isolate TS17-2016, complete genome 4787 15655 90% 0.0 97% KX806557.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 4787 15620 90% 0.0 97% KX766028.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 4787 15676 90% 0.0 97% KU729218.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 4787 15665 90% 0.0 97% KU365777.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 4783 15627 90% 0.0 97% KX056898.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 4783 15624 90% 0.0 97% KU740184.2 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 4783 15624 90% 0.0 97% KU761564.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 4778 15627 90% 0.0 97% KX117076.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 4778 15626 90% 0.0 97% KU955590.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 4774 15618 90% 0.0 96% KX185891.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 4774 15618 90% 0.0 96% KU963796.1 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 4769 15609 90% 0.0 96% KX266255.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 4769 15613 90% 0.0 96% KU866423.2 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 4769 15613 90% 0.0 96% KX253996.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 4769 15613 90% 0.0 96% KU955589.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 4769 15613 90% 0.0 96% KU820899.2 Select seq gb|KX813683.1| Zika virus isolate ZKA-16-097 polyprotein gene, complete cds 4747 15445 90% 0.0 96% KX813683.1 Select seq gb|KU744693.1| Zika virus isolate VE_Ganxian, complete genome 4738 15471 90% 0.0 96% KU744693.1 Select seq gb|KX447520.1| Zika virus isolate 1_0016_PF polyprotein gene, partial cds 3748 13387 76% 0.0 97% KX447520.1 Select seq gb|KX576684.1| Zika virus vector pZIKV-ICD, complete sequence 3510 15722 90% 0.0 99% KX576684.1 Select seq gb|KX447518.1| Zika virus isolate 1_0117_PF polyprotein gene, partial cds 3507 13633 78% 0.0 99% KX447518.1 Select seq gb|KX447521.1| Zika virus isolate 1_0080_PF polyprotein gene, partial cds 3492 12390 71% 0.0 99% KX447521.1 Link to comment Share on other sites More sharing options...
niman Posted October 12, 2016 Author Report Share Posted October 12, 2016 DOM_2016_BB-0436_SER match Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 18444 18444 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 18442 18442 100% 0.0 99% KU853012.1 Select seq gb|KX842449.2| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds 18429 18429 100% 0.0 99% KX842449.2 Select seq gb|KX922703.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds 18426 18426 100% 0.0 99% KX922703.1 Select seq gb|KX922707.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds 18420 18420 100% 0.0 99% KX922707.1 Select seq gb|KX838905.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds 18417 18417 100% 0.0 99% KX838905.2 Select seq gb|KX832731.1| Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds 18417 18417 100% 0.0 99% KX832731.1 Select seq gb|KX922706.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds 18413 18413 100% 0.0 99% KX922706.1 Select seq gb|KX922704.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds 18411 18411 100% 0.0 99% KX922704.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 18411 18411 100% 0.0 99% KX673530.1 Select seq gb|KX838906.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds 18408 18408 100% 0.0 99% KX838906.2 Select seq gb|KX838904.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds 18406 18406 100% 0.0 99% KX838904.2 Select seq gb|KX922705.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds 18395 18395 100% 0.0 99% KX922705.1 Select seq gb|KX922708.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds 18390 18390 100% 0.0 99% KX922708.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 18354 18354 100% 0.0 99% KX447510.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 18348 18348 100% 0.0 99% KX280026.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 18345 18345 100% 0.0 99% KX447512.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 18345 18345 100% 0.0 99% KX369547.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 18345 18345 100% 0.0 99% KU509998.3 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 18339 18339 100% 0.0 99% KJ776791.2 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 18339 18339 100% 0.0 99% KX447509.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 18339 18339 100% 0.0 99% KU991811.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 18339 18339 100% 0.0 99% KU729217.2 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 18336 18336 100% 0.0 99% KX447513.1 Select seq gb|KX811222.1| Zika virus isolate Brazil_2015_MG, complete genome 18330 18330 100% 0.0 99% KX811222.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 18330 18330 100% 0.0 99% KX197205.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 18330 18330 100% 0.0 99% KX447515.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 18330 18330 100% 0.0 99% KX447511.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 18330 18330 100% 0.0 99% KU321639.1 Select seq gb|KX879604.1| Zika virus isolate SN089, complete genome 18327 18327 100% 0.0 99% KX879604.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 18327 18327 100% 0.0 99% KX447514.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 18327 18327 100% 0.0 99% KX051563.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 18321 18321 100% 0.0 99% KX447516.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 18321 18321 100% 0.0 99% KU729218.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 18321 18321 100% 0.0 99% KU707826.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 18321 18321 100% 0.0 99% KU527068.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 18321 18321 100% 0.0 99% KU365779.1 Select seq gb|KX879603.1| Zika virus isolate SN062, complete genome 18318 18318 100% 0.0 99% KX879603.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 18318 18318 100% 0.0 99% KX262887.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 18318 18318 100% 0.0 99% KX197192.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 18318 18318 100% 0.0 99% KU926310.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 18318 18318 100% 0.0 99% KU926309.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 18312 18312 100% 0.0 99% KU940228.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 18309 18309 100% 0.0 99% KX694534.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 18309 18309 100% 0.0 99% KX198135.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 18309 18309 100% 0.0 99% KU501217.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 18309 18309 100% 0.0 99% KU365780.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 18305 18305 99% 0.0 99% KU497555.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 18303 18303 100% 0.0 99% KU647676.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 18303 18303 100% 0.0 99% KU501216.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 18303 18303 100% 0.0 99% KU365777.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 18300 18300 100% 0.0 99% KX447517.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 18300 18300 100% 0.0 99% KU758877.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 18300 18300 100% 0.0 99% KX247646.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 18300 18300 100% 0.0 99% KX156776.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 18294 18294 100% 0.0 99% KX520666.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 18294 18294 100% 0.0 99% KX156774.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 18291 18291 100% 0.0 99% KU820897.5 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 18291 18291 100% 0.0 99% KX247632.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 18291 18291 100% 0.0 99% KX156775.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 18291 18291 100% 0.0 99% KX087102.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 18291 18291 100% 0.0 99% KU365778.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 18291 18291 100% 0.0 99% KU312312.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 18285 18285 100% 0.0 99% KU922960.1 Select seq gb|KX856011.1| Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome 18282 18282 100% 0.0 99% KX856011.1 Select seq gb|KX806557.1| Zika virus isolate TS17-2016, complete genome 18282 18282 100% 0.0 99% KX806557.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 18282 18282 100% 0.0 99% KX548902.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 18282 18282 100% 0.0 99% KX446951.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 18282 18282 100% 0.0 99% KU937936.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 18282 18282 100% 0.0 99% KU922923.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 18282 18282 100% 0.0 99% KU501215.1 Select seq gb|KX893855.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-2/2016, complete genome 18276 18276 100% 0.0 99% KX893855.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 18276 18276 100% 0.0 99% KX601168.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 18276 18276 100% 0.0 99% KX446950.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 18276 18276 100% 0.0 99% KX087101.2 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 18276 18276 100% 0.0 99% KU870645.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 18273 18273 100% 0.0 99% KX702400.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 18273 18273 100% 0.0 99% KX377337.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 18267 18267 100% 0.0 99% KX056898.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 18267 18267 100% 0.0 99% KU955590.1 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 18264 18264 100% 0.0 99% KX766029.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 18264 18264 100% 0.0 99% KU820898.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 18256 18256 100% 0.0 99% KX766028.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 18254 18254 100% 0.0 99% KU740184.2 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 18254 18254 100% 0.0 99% KU761564.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 18249 18249 100% 0.0 99% KX117076.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 18240 18240 100% 0.0 99% KX185891.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 18240 18240 100% 0.0 99% KU963796.1 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 18236 18236 100% 0.0 99% KX253996.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 18236 18236 100% 0.0 99% KU955589.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 18236 18236 100% 0.0 99% KU820899.2 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 18233 18233 100% 0.0 99% KX266255.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 18231 18231 100% 0.0 99% KU866423.2 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 18218 18218 99% 0.0 99% KU940224.1 Select seq gb|KU744693.1| Zika virus isolate VE_Ganxian, complete genome 18096 18096 100% 0.0 99% KU744693.1 Select seq gb|KX827309.1| Zika virus isolate ZKA-16-291 polyprotein gene, complete cds 18083 18083 100% 0.0 99% KX827309.1 Select seq gb|KX813683.1| Zika virus isolate ZKA-16-097 polyprotein gene, complete cds 18069 18069 100% 0.0 99% KX813683.1 Select seq gb|KU681081.3| Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome 18006 18006 100% 0.0 99% KU681081.3 Select seq gb|KX694532.1| Zika virus strain ZIKV/Homo sapiens/THA/PLCal_ZV/2013, complete genome 17897 17897 100% 0.0 99% KX694532.1 Select seq gb|KU955593.1| Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome 17717 17717 100% 0.0 98% KU955593.1 Select seq gb|JN860885.1| Zika virus isolate FSS13025 polyprotein gene, partial cds 17717 17717 99% 0.0 98% JN860885.1 Select seq gb|KF993678.1| Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds 17667 17667 98% 0.0 99% KF993678.1 Select seq gb|EU545988.1| Zika virus polyprotein gene, complete cds 17562 17562 100% 0.0 98% EU545988.1 Select seq gb|KU681082.3| Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome 17411 17411 100% 0.0 98% KU681082.3 Select seq gb|KX601167.1| Zika virus strain ZIKV/Aedes sp./MYS/P6-740/1966, complete genome 16379 16379 100% 0.0 95% KX601167.1 Select seq gb|KX694533.1| Zika virus strain ZIKV/Aedes aegypti/MYS/P6-740/1966, complete genome 16370 16370 100% 0.0 95% KX694533.1 Select seq gb|HQ234499.1| Zika virus isolate P6-740 polyprotein gene, partial cds 16370 16370 99% 0.0 95% HQ234499.1 Select seq gb|KX377336.1| Zika virus strain P6-740, complete genome 16365 16365 100% 0.0 95% KX377336.1 Select seq gb|KX447518.1| Zika virus isolate 1_0117_PF polyprotein gene, partial cds 16193 16193 88% 0.0 99% KX447518.1 Select seq gb|KF383115.1| Zika virus strain ArB1362 polyprotein gene, complete cds 13329 13329 100% 0.0 89% KF383115.1 Select seq gb|KF268949.1| Zika virus isolate ARB15076 polyprotein gene, complete cds 13324 13324 100% 0.0 89% KF268949.1 Select seq gb|KX830960.1| Zika virus culture ATCC:VR-84 isolate MR776, complete genome 13317 13317 100% 0.0 89% KX830960.1 Select seq gb|KU720415.1| Zika virus strain MR 766 polyprotein gene, complete cds 13317 13317 100% 0.0 89% KU720415.1 Select seq gb|HQ234498.1| Zika virus isolate MR_766 polyprotein gene, partial cds 13311 13311 99% 0.0 89% HQ234498.1 Select seq gb|DQ859059.1| Zika virus strain MR 766 polyprotein gene, complete cds 13311 13311 100% 0.0 89% DQ859059.1 Select seq gb|KF268950.1| Zika virus isolate ARB7701 polyprotein gene, complete cds 13308 13308 100% 0.0 89% KF268950.1 Select seq gb|KF268948.1| Zika virus isolate ARB13565 polyprotein gene, complete cds 13306 13306 100% 0.0 89% KF268948.1 Select seq gb|KX377335.1| Zika virus strain MR-766, complete genome 13304 13304 100% 0.0 89% KX377335.1 Select seq gb|KF383119.1| Zika virus strain ArD158084 polyprotein gene, complete cds 13299 13299 100% 0.0 89% KF383119.1 Select seq dbj|LC002520.1| Zika virus genomic RNA, complete genome, strain: MR766-NIID 13295 13295 100% 0.0 89% LC002520.1 Select seq gb|KU955595.1| Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome 13290 13290 100% 0.0 89% KU955595.1 Select seq gb|KU955592.1| Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome 13281 13281 100% 0.0 89% KU955592.1 Select seq gb|KX601169.1| Zika virus strain ZIKV/Macaca mulatta/UGA/MR-766/1947, complete genome 13279 13279 100% 0.0 89% KX601169.1 Select seq gb|KU963573.1| Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds 13279 13279 100% 0.0 89% KU963573.1 Select seq gb|KU955594.1| Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome 13279 13279 100% 0.0 89% KU955594.1 Select seq gb|KX198134.1| Zika virus strain ZIKV/Aedes africanus/SEN/DAK-AR-41524_A1C1-V2/1984, complete genome 13268 13751 100% 0.0 89% KX198134.1 Select seq gb|KU955591.1| Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome 13263 13263 100% 0.0 89% KU955591.1 Select seq gb|KF383116.1| Zika virus strain ArD7117 polyprotein gene, complete cds 13257 13257 100% 0.0 89% KF383116.1 Select seq gb|AY632535.2| Zika virus strain MR 766, complete genome 13236 13236 100% 0.0 89% AY632535.2 Select seq gb|HQ234501.1| Zika virus isolate ArD_41519 polyprotein gene, partial cds 13232 13232 99% 0.0 89% HQ234501.1 Select seq gb|KX601166.1| Zika virus strain ZIKV/Aedes africanus/SEN/DakAr41524/1984, complete genome 13207 13207 100% 0.0 88% KX601166.1 Select seq gb|KF383117.1| Zika virus strain ArD128000 polyprotein gene, complete cds 13178 13178 100% 0.0 88% KF383117.1 Select seq gb|KU963574.1| Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds 13171 13273 100% 0.0 88% KU963574.1 Select seq gb|HQ234500.1| Zika virus isolate IbH_30656 polyprotein gene, partial cds 13171 13171 99% 0.0 88% HQ234500.1 Select seq gb|KF383118.1| Zika virus strain ArD157995 polyprotein gene, complete cds 12972 13040 100% 0.0 88% KF383118.1 Select seq gb|KF383121.1| Zika virus strain ArD158095 polyprotein gene, partial cds 12900 12900 97% 0.0 89% KF383121.1 Select seq gb|KX447520.1| Zika virus isolate 1_0016_PF polyprotein gene, partial cds 11499 15792 86% 0.0 99% KX447520.1 Select seq gb|KX576684.1| Zika virus vector pZIKV-ICD, complete sequence 10922 18351 100% 0.0 99% KX576684.1 Select seq gb|KF383120.1| Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence 10846 10846 97% 0.0 84% KF383120.1 Select seq gb|KX447519.1| Zika virus isolate 1_0199_PF polyprotein gene, partial cds 9997 16070 87% 0.0 99% KX447519.1 Select seq gb|KX447521.1| Zika virus isolate 1_0080_PF polyprotein gene, partial cds 9836 14948 81% 0.0 99% KX447521.1 Select seq gb|KX830961.1| Synthetic construct, complete sequence 9387 13324 100% 0.0 89% KX830961.1 Select seq gb|KU940227.1| Zika virus isolate Bahia08, partial genome 5020 14384 87% 0.0 95% KU940227.1 Select seq gb|KX212103.1| Zika virus isolate BRZIKV_AB_ES polyprotein gene, partial cds 5003 5003 27% 0.0 99% KX212103.1 Select seq gb|KU758869.1| Zika virus isolate 05211 polyprotein gene, partial cds 4973 4973 26% 0.0 99% KU758869.1 Select seq gb|KU758875.1| Zika virus isolate 15042 polyprotein gene, partial cds 4964 4964 27% 0.0 99% KU758875.1 Select seq gb|KU758871.1| Zika virus isolate 17170 polyprotein gene, partial cds 4962 4962 27% 0.0 99% KU758871.1 Select seq gb|KU758870.1| Zika virus isolate 17160 polyprotein gene, partial cds 4955 4955 27% 0.0 99% KU758870.1 Select seq gb|KU758873.1| Zika virus isolate 18246 polyprotein gene, partial cds 4953 4953 27% 0.0 99% KU758873.1 Select seq gb|KU312314.1| Zika virus isolate Z1106031 polyprotein gene, partial cds 4953 4953 27% 0.0 99% KU312314.1 Select seq gb|KU758868.1| Zika virus isolate 27229 polyprotein gene, partial cds 4942 4942 26% 0.0 99% KU758868.1 Select seq gb|KU758872.1| Zika virus isolate 01170 polyprotein gene, partial cds 4940 4940 27% 0.0 99% KU758872.1 Select seq gb|KU758874.1| Zika virus isolate 20114 polyprotein gene, partial cds 4938 4938 26% 0.0 99% KU758874.1 Select seq gb|KU758876.1| Zika virus isolate 21068 polyprotein gene, partial cds 4929 4929 27% 0.0 99% KU758876.1 Select seq gb|KU312313.1| Zika virus isolate Z1106032 polyprotein gene, partial cds 4926 4926 27% 0.0 99% KU312313.1 Select seq gb|KU646828.1| Zika virus isolate Si322 polyprotein gene, partial cds 4623 4623 25% 0.0 99% KU646828.1 Select seq gb|KU646827.1| Zika virus isolate Si323 polyprotein gene, partial cds 4614 4614 25% 0.0 99% KU646827.1 Select seq gb|KX101060.1| Zika virus isolate Bahia02, partial genome 4195 13267 75% 0.0 95% KX101060.1 Select seq gb|KU312315.1| Zika virus isolate Z1106027 polyprotein gene, partial cds 3413 3413 18% 0.0 99% KU312315.1 Select seq gb|KU740199.1| Zika virus isolate VE_Ganxian2016 polyprotein gene, partial cds 3202 3202 17% 0.0 99% KU740199.1 Select seq gb|KX101066.1| Zika virus isolate Bahia01, partial genome 3094 13068 74% 0.0 99% KX101066.1 Select seq gb|DQ859064.1| Spondweni virus strain SM-6 V-1 polyprotein gene, complete cds 2870 4211 95% 0.0 71% DQ859064.1 Select seq gb|KX216638.1| Zika virus isolate ESS23-2015 envelope protein gene, partial cds 2695 2695 14% 0.0 99% KX216638.1 Select seq gb|KX216637.1| Zika virus isolate GS29-2016 envelope protein gene, partial cds 2695 2695 14% 0.0 99% KX216637.1 Select seq gb|KX216635.1| Zika virus isolate TS17-2016 envelope protein gene, partial cds 2691 2691 14% 0.0 99% KX216635.1 Select seq gb|KX216634.1| Zika virus isolate TS14-2016 envelope protein gene, partial cds 2691 2691 14% 0.0 99% KX216634.1 Select seq gb|KX380262.1| Zika virus isolate MS10-2016 envelope protein gene, partial cds 2686 2686 14% 0.0 99% KX380262.1 Select seq gb|KX216632.1| Zika virus isolate SIS58-2015 envelope protein gene, partial cds 2686 2686 14% 0.0 99% KX216632.1 Select seq gb|KX380263.1| Zika virus isolate FS92-2016 envelope protein gene, partial cds 2682 2682 14% 0.0 99% KX380263.1 Select seq gb|KX216640.1| Zika virus isolate CKS63-2014 envelope protein gene, partial cds 2682 2682 14% 0.0 99% KX216640.1 Select seq gb|KX216636.1| Zika virus isolate SS27-2016 envelope protein gene, partial cds 2682 2682 14% 0.0 99% KX216636.1 Select seq gb|KX216633.1| Zika virus isolate VS51-2016 envelope protein gene, partial cds 2677 2677 14% 0.0 99% KX216633.1 Select seq gb|KJ634273.1| Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds 2677 2677 14% 0.0 99% KJ634273.1 Select seq gb|KX928077.1| Zika virus isolate HN16 polyprotein gene, partial cds 2673 2673 14% 0.0 99% KX928077.1 Select seq dbj|LC171327.1| Zika virus gene for polyprotein, partial cds, strain: ZIKV/Hu/Chiba/S36/2016 2673 2673 14% 0.0 99% LC171327.1 Select seq gb|KX216639.1| Zika virus isolate SS57-2016 envelope protein gene, partial cds 2664 2664 14% 0.0 99% KX216639.1 Select seq gb|KX101064.1| Zika virus isolate Bahia11, partial genome 2268 10757 65% 0.0 92% KX101064.1 Select seq gb|KX867786.1| Zika virus isolate D304 polyprotein gene, partial cds 2183 2183 12% 0.0 97% KX867786.1 Select seq gb|KU686218.1| Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds 2057 2057 11% 0.0 99% KU686218.1 Select seq gb|KU179098.1| Zika virus isolate JMB-185 nonstructural protein 5 gene, partial cds 2012 2012 11% 0.0 99% KU179098.1 Select seq gb|KU886298.1| Zika virus isolate MN NS5 gene, partial cds 1862 1862 10% 0.0 99% KU886298.1 Select seq gb|KX059014.1| Zika virus isolate Haiti/1230/2014 NS5 gene, partial cds 1833 1833 9% 0.0 99% KX059014.1 Select seq gb|KX059013.1| Zika virus isolate Haiti/1227/2014 NS5 gene, partial cds 1833 1833 9% 0.0 99% KX059013.1 Select seq gb|KX101061.1| Zika virus isolate Bahia03, partial genome 1831 13855 78% 0.0 99% KX101061.1 Select seq gb|KM078936.1| Zika virus strain CHI1410214 NS5 protein gene, partial cds 1746 1746 9% 0.0 99% KM078936.1 Select seq gb|KM078961.1| Zika virus strain CHI2612114 NS5 protein gene, partial cds 1745 1745 9% 0.0 99% KM078961.1 Select seq gb|KM078930.1| Zika virus strain CHI2283714 NS5 protein gene, partial cds 1743 1743 9% 0.0 99% KM078930.1 Select seq gb|KM078971.1| Zika virus strain CHI2613014 NS5 protein gene, partial cds 1739 1739 9% 0.0 99% KM078971.1 Select seq gb|KM078970.1| Zika virus strain CHI2490414 NS5 protein gene, partial cds 1739 1739 9% 0.0 99% KM078970.1 Select seq gb|KM078933.1| Zika virus strain CHI1058514 NS5 protein gene, partial cds 1739 1739 9% 0.0 99% KM078933.1 Select seq gb|KM078929.1| Zika virus strain CHI1805214 NS5 protein gene, partial cds 1737 1737 9% 0.0 99% KM078929.1 Select seq gb|KX377120.1| Zika virus isolate SP54-2016 nonstructural protein 5 gene, partial cds 1694 1694 9% 0.0 99% KX377120.1 Select seq gb|KX173841.1| Zika virus isolate 16Z11 envelope protein gene, partial cds 1649 1649 9% 0.0 99% KX173841.1 Select seq gb|KX173840.1| Zika virus isolate 16Z10 envelope protein gene, partial cds 1649 1649 9% 0.0 99% KX173840.1 Select seq gb|KJ873160.1| Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds 1597 1597 8% 0.0 99% KJ873160.1 Select seq gb|KX173843.1| Zika virus isolate 16Z62 envelope protein gene, partial cds 1517 1517 8% 0.0 99% KX173843.1 Select seq gb|KX173844.1| Zika virus isolate 16Z62 envelope protein gene, partial cds 1507 1507 8% 0.0 99% KX173844.1 Select seq gb|KJ873161.1| Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds 1415 1415 7% 0.0 99% KJ873161.1 Select seq gb|KM851039.1| Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds 1382 1382 7% 0.0 99% KM851039.1 Select seq gb|KU985087.1| Zika virus isolate MEX/InDRE/Zika-2/2015 nonstructural protein 5 gene, partial cds 1348 1348 7% 0.0 99% KU985087.1 Select seq gb|KM851038.1| Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds 1346 1346 7% 0.0 98% KM851038.1 Select seq gb|KU556802.1| Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds 1342 1342 7% 0.0 99% KU556802.1 Select seq gb|KU724096.1| Zika virus isolate 259249_2015_Panama NS5B gene, partial cds 1301 1301 7% 0.0 99% KU724096.1 Select seq gb|AF013415.1| Zika virus strain MR-766 NS5 protein (NS5) gene, partial cds 1301 1301 10% 0.0 88% AF013415.1 Select seq gb|KU232300.1| Zika virus isolate 067ZV_PEBR15 NS5 protein gene, partial cds 1234 1234 6% 0.0 99% KU232300.1 Select seq gb|KT200609.1| Zika virus isolate BR/949/15 NS5 gene, partial cds 1231 1231 6% 0.0 99% KT200609.1 Select seq gb|KU232290.1| Zika virus isolate 036ZV_PEBR15 NS5 protein gene, partial cds 1225 1225 6% 0.0 99% KU232290.1 Select seq gb|KU232297.1| Zika virus isolate 049ZV_PEBR15 NS5 protein gene, partial cds 1223 1223 6% 0.0 99% KU232297.1 Select seq gb|KU232294.1| Zika virus isolate 061ZV_PEBR15 NS5 protein gene, partial cds 1216 1216 6% 0.0 99% KU232294.1 Select seq gb|KU232292.1| Zika virus isolate 054ZV_PEBR15 NS5 protein gene, partial cds 1213 1213 6% 0.0 99% KU232292.1 Select seq gb|KU232298.1| Zika virus isolate 050ZV_PEBR15 NS5 protein gene, partial cds 1209 1209 6% 0.0 99% KU232298.1 Select seq gb|KU232293.1| Zika virus isolate 057ZV_PEBR15 NS5 protein gene, partial cds 1207 1207 6% 0.0 99% KU232293.1 Select seq gb|KU232296.1| Zika virus isolate 045ZV_PEBR15 NS5 protein gene, partial cds 1205 1205 6% 0.0 99% KU232296.1 Select seq gb|KU232295.1| Zika virus isolate 068ZV_PEBR15 NS5 protein gene, partial cds 1202 1202 6% 0.0 99% KU232295.1 Select seq gb|KU232288.1| Zika virus isolate 001ZV_PEBR15 NS5 protein gene, partial cds 1191 1191 6% 0.0 99% KU232288.1 Select seq gb|KU232289.1| Zika virus isolate 020ZV_PEBR15 NS5 protein gene, partial cds 1187 1187 6% 0.0 99% KU232289.1 Select seq gb|KU232299.1| Zika virus isolate 015ZV_PEBR15 NS5 protein gene, partial cds 1184 1184 6% 0.0 99% KU232299.1 Select seq gb|KX101063.1| Zika virus isolate Bahia05, partial genome 1180 7407 42% 0.0 99% KX101063.1 Select seq gb|KU232291.1| Zika virus isolate 051ZV_PEBR15 NS5 protein gene, partial cds 1180 1180 6% 0.0 99% KU232291.1 Select seq gb|KU724097.1| Zika virus isolate 259250_2015_Panama NS5B gene, partial cds 1178 1178 6% 0.0 100% KU724097.1 Select seq gb|KX101065.1| Zika virus isolate Bahia15, partial genome 1171 7766 46% 0.0 99% KX101065.1 Select seq gb|KU724098.1| Zika virus isolate 259060_2015_Panama NS5B gene, partial cds 1166 1166 6% 0.0 99% KU724098.1 Select seq gb|KU758878.1| Zika virus polyprotein gene, partial cds 1133 1133 6% 0.0 99% KU758878.1 Select seq gb|KU724099.1| Zika virus isolate 259032_2015_Panama NS5B gene, partial cds 1101 1101 5% 0.0 99% KU724099.1 Select seq gb|KF270886.1| Zika virus strain CCB-870 envelope glycoprotein gene, partial cds 1086 1086 8% 0.0 89% KF270886.1 Select seq gb|KX101062.1| Zika virus isolate Bahia04, partial genome 1045 7321 41% 0.0 97% KX101062.1 Select seq gb|AF372422.1|AF372422 Zika virus envelope protein (E) gene, partial cds 1020 1020 8% 0.0 87% AF372422.1 Select seq gb|KU867812.1| Zika virus isolate Jiangxi.CHN/01/2016 nonstructural protein 5 gene, partial cds 1018 1018 5% 0.0 100% KU867812.1 Link to comment Share on other sites More sharing options...
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