Dominican Republic Zika Sequences Match Florida Sub-clade

[niman]

A consortium, including the Harvard/MIT Broad Institute are releasing 33 Zika sequences, including a subset from Santo Domingo Dominican Republic  which match the Florida sub-clade (the Florida sequences from Broad are from same cases as the Andersen lab at Scripps Clinic.

Edited October 7, 2016 by niman

[niman]

The Broad Viral Genomics Group and MIT, together with partners at Oswaldo Cruz Foundation (Fiocruz) in Brazil; National Autonomous University of Honduras, and Florida Gulf Coast University (FGCU), are releasing 33 near-complete Zika virus (ZIKV) genomes sequenced from patient samples and mosquito pools collected in Brazil, Honduras, the Dominican Republic, and Florida between March and September 2016.

http://virological.org/t/33-zika-virus-genomes-sequenced-from-patient-and-pooled-mosquito-samples/372

[niman]

33 Zika virus genomes sequenced from patient and pooled mosquito samples

Zika virus

Oct 4

1 / 3

Oct 5

19h ago

haydenHayden Metsky

22h

33 Zika virus genomes sequenced from patient and pooled mosquito samples collected in Rio de Janeiro, Tegucigalpa, Santo Domingo, and Florida, March-September 2016

The Broad Viral Genomics Group and MIT, together with partners at Oswaldo Cruz Foundation (Fiocruz) in Brazil; National Autonomous University of Honduras, and Florida Gulf Coast University (FGCU), are releasing 33 near-complete Zika virus (ZIKV) genomes sequenced from patient samples and mosquito pools collected in Brazil, Honduras, the Dominican Republic, and Florida between March and September 2016.

We are releasing the assemblies as consensus genomes and are in the process of depositing assemblies and read data, as well as sample metadata (generously shared by partners and including: place and date of collection, age, sex, and date of symptom onset), on NCBI GenBank.

The 33 ZIKV consensus sequences can be downloaded here:
ZIKV_BROAD_2016-10.fasta.txt17 (342.5 KB; this is a fasta file ending in '.txt' because virological only allows certain file extensions)

Of the 33 samples, 9 are from Rio de Janeiro, Brazil, 7 are from Tegucigalpa, Honduras, 8 are from Santo Domingo, Dominican Republic, and 9 are from Florida, United States. 29 are from Zika-infected patients (10 urine, 7 plasma, 12 serum) and 4 are from ZIKV+ mosquito pools caught in Florida. All 33 genomes have >70% of the Zika genome and 22 have >95% of the Zika genome covered.

The samples were not cultured or passaged prior to sequencing. We experimented with different unbiased library preparation methods, and/or used amplicon-based sequencing, followed by Illumina sequencing on MiSeq and HiSeq platforms at the Broad Institute. Genomes were assembled using the Sabeti lab’s viral-ngs pipeline9, which creates a de novo assembly from cleaned reads and performs additional refinement in a reference-assisted scaffolding process.

We assembled 17 Zika genomes after enriching libraries for Zika content by the Sabeti lab’s hybrid capture10 protocol. 13 have median coverage >25x and 4 have median coverage >250x. The other 16 were sequenced with amplicon-based sequencing using a protocol3 developed by the ZiBRA project and modified by the Andersen lab. We are still optimizing our pre-sequencing sample protocols, and will document our full process in a future update.

For more information about this project and data release, contact [email protected].

Disclaimer:
Please feel free to download, use, and share this data. Our partners and we are currently in the process of preparing publications describing our wet lab and genome analysis methods, and describing viral evolution and transmission patterns. We will post progress regarding data improvements, publications, and terms of use on this forum. If you intend to use these sequences for publication prior to the release of our papers, please contact us directly. If you are interested in joining our collaboration—or if you have any other questions—please also contact us directly.

The work was and continues to be part of a productive and growing collaboration across nations. Those currently involved include the following investigators and their teams:

Pardis Sabeti, Broad Institute and Harvard University, USA
Irene Bosch and Lee Gehrke, MIT, USA
Thiago Moreno L. Souza, Patrícia T. Bozza, Dr. Gonzalo Belo, and Wim Degrave, Oswaldo Cruz Foundation, Brazil
Fernando Bozza, Oswaldo Cruz Foundation and D’or Institute, Brazil
Fabiano L. Thompson, Federal University of Rio de Janeiro, Brazil
Kristian Andersen, The Scripps Research Institute, USA
Salim Mattar, Universidad de Córdoba, Colombia
Ivette Lorenzana, Universidad Nacional de Honduras, Honduras
Sharon Isern and Scott F. Michael, Florida Gulf Coast University, USA

Daniel Olson and Edwin J. Asturias, Colorado School of Public Health, USA

Edited October 5, 2016 by niman

[niman]

DOM_2016_BB-0180_SER

matches

Sequences producing significant alignments:

Select:AllNone Selected:0

AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments

Sequences producing significant alignments:

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
Select seq gb|KU853013.1|	Zika virus isolate Dominican Republic/2016/PD2, complete genome	18474	18474	100%	0.0	99%	KU853013.1
Select seq gb|KU853012.1|	Zika virus isolate Dominican Republic/2016/PD1, complete genome	18474	18474	100%	0.0	99%	KU853012.1
Select seq gb|KX842449.1|	Zika virus isolate ZIKV/Human/USA/2016/ZF10.UR-010 polyprotein gene, complete cds	18456	18456	100%	0.0	99%	KX842449.1
Select seq gb|KX838905.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM2-7719 polyprotein gene, complete cds	18453	18453	100%	0.0	99%	KX838905.1
Select seq gb|KX838904.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM1-7501 polyprotein gene, complete cds	18447	18447	100%	0.0	99%	KX838904.1
Select seq gb|KX832731.1|	Zika virus isolate ZIKV/Human/USA/2016/ZL2.SA-Hu0015 polyprotein gene, complete cds	18447	18447	100%	0.0	99%	KX832731.1
Select seq gb|KX838906.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM3-7729 polyprotein gene, complete cds	18444	18444	100%	0.0	99%	KX838906.1
Select seq gb|KX673530.1|	Zika virus isolate PHE_semen_Guadeloupe, complete genome	18444	18444	100%	0.0	99%	KX673530.1
Select seq gb|KX447510.1|	Zika virus isolate 1_0049_PF polyprotein gene, complete cds	18393	18393	100%	0.0	99%	KX447510.1
Select seq gb|KX280026.1|	Zika virus isolate Paraiba_01, complete genome	18390	18390	100%	0.0	99%	KX280026.1
Select seq gb|KX447512.1|	Zika virus isolate 1_0181_PF polyprotein gene, complete cds	18384	18384	100%	0.0	99%	KX447512.1
Select seq gb|KX369547.1|	Zika virus strain PF13/251013-18, complete genome	18384	18384	100%	0.0	99%	KX369547.1
Select seq gb|KU509998.3|	Zika virus strain Haiti/1225/2014, complete genome	18384	18384	100%	0.0	99%	KU509998.3
Select seq gb|KJ776791.2|	Zika virus strain H/PF/2013, complete genome	18381	18381	100%	0.0	99%	KJ776791.2
Select seq gb|KX447509.1|	Zika virus isolate 1_0087_PF polyprotein gene, complete cds	18381	18381	100%	0.0	99%	KX447509.1
Select seq gb|KU991811.1|	Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds	18381	18381	100%	0.0	99%	KU991811.1
Select seq gb|KU729217.2|	Zika virus isolate BeH823339 polyprotein gene, complete cds	18381	18381	100%	0.0	99%	KU729217.2
Select seq gb|KX447513.1|	Zika virus isolate 1_0134_PF polyprotein gene, complete cds	18375	18375	100%	0.0	99%	KX447513.1
Select seq gb|KX811222.1|	Zika virus isolate Brazil_2015_MG, complete genome	18372	18372	100%	0.0	99%	KX811222.1
Select seq gb|KX197205.1|	Zika virus isolate 9, complete genome	18372	18372	100%	0.0	99%	KX197205.1
Select seq gb|KX447515.1|	Zika virus isolate 1_0030_PF polyprotein gene, complete cds	18372	18372	100%	0.0	99%	KX447515.1
Select seq gb|KX447511.1|	Zika virus isolate 1_0015_PF polyprotein gene, complete cds	18372	18372	100%	0.0	99%	KX447511.1
Select seq gb|KU321639.1|	Zika virus strain ZikaSPH2015, complete genome	18372	18372	100%	0.0	99%	KU321639.1
Select seq gb|KX879604.1|	Zika virus isolate SN089, complete genome	18366	18366	100%	0.0	99%	KX879604.1
Select seq gb|KX447514.1|	Zika virus isolate 1_0035_PF polyprotein gene, complete cds	18366	18366	100%	0.0	99%	KX447514.1
Select seq gb|KX051563.1|	Zika virus isolate Haiti/1/2016, complete genome	18366	18366	100%	0.0	99%	KX051563.1
Select seq gb|KX447516.1|	Zika virus isolate 1_0111_PF polyprotein gene, complete cds	18363	18363	100%	0.0	99%	KX447516.1
Select seq gb|KU729218.1|	Zika virus isolate BeH828305 polyprotein gene, complete cds	18363	18363	100%	0.0	99%	KU729218.1
Select seq gb|KU707826.1|	Zika virus isolate SSABR1, complete genome	18363	18363	100%	0.0	99%	KU707826.1
Select seq gb|KU527068.1|	Zika virus strain Natal RGN, complete genome	18363	18363	100%	0.0	99%	KU527068.1
Select seq gb|KU365779.1|	Zika virus strain BeH819966 polyprotein gene, complete cds	18363	18363	100%	0.0	99%	KU365779.1
Select seq gb|KX879603.1|	Zika virus isolate SN062, complete genome	18357	18357	100%	0.0	99%	KX879603.1
Select seq gb|KX262887.1|	Zika virus isolate 103451, complete genome	18357	18357	100%	0.0	99%	KX262887.1
Select seq gb|KX197192.1|	Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome	18357	18357	100%	0.0	99%	KX197192.1
Select seq gb|KU926310.1|	Zika virus isolate Rio-S1, complete genome	18357	18357	100%	0.0	99%	KU926310.1
Select seq gb|KU926309.1|	Zika virus isolate Rio-U1, complete genome	18357	18357	100%	0.0	99%	KU926309.1
Select seq gb|KU940228.1|	Zika virus isolate Bahia07, partial genome	18354	18354	100%	0.0	99%	KU940228.1
Select seq gb|KX694534.1|	Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome	18348	18348	100%	0.0	99%	KX694534.1
Select seq gb|KX198135.1|	Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome	18348	18348	100%	0.0	99%	KX198135.1
Select seq gb|KU501217.1|	Zika virus strain 8375 polyprotein gene, complete cds	18348	18348	100%	0.0	99%	KU501217.1
Select seq gb|KU365780.1|	Zika virus strain BeH815744 polyprotein gene, complete cds	18348	18348	100%	0.0	99%	KU365780.1
Select seq gb|KU647676.1|	Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds	18345	18345	100%	0.0	99%	KU647676.1
Select seq gb|KU501216.1|	Zika virus strain 103344 polyprotein gene, complete cds	18345	18345	100%	0.0	99%	KU501216.1
Select seq gb|KU365777.1|	Zika virus strain BeH818995 polyprotein gene, complete cds	18345	18345	100%	0.0	99%	KU365777.1
Select seq gb|KX447517.1|	Zika virus isolate 1_0038_PF polyprotein gene, complete cds	18339	18339	100%	0.0	99%	KX447517.1
Select seq gb|KU758877.1|	Zika virus isolate 17271 polyprotein gene, complete cds	18339	18339	100%	0.0	99%	KU758877.1
Select seq gb|KX247646.1|	Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome	18339	18339	100%	0.0	99%	KX247646.1
Select seq gb|KX156776.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome	18339	18339	100%	0.0	99%	KX156776.1
Select seq gb|KX520666.1|	Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds	18336	18336	100%	0.0	99%	KX520666.1
Select seq gb|KX156774.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome	18336	18336	100%	0.0	99%	KX156774.1
Select seq gb|KU497555.1|	Zika virus isolate Brazil-ZKV2015, complete genome	18336	18336	99%	0.0	99%	KU497555.1
Select seq gb|KU820897.5|	Zika virus isolate FLR polyprotein gene, complete cds	18330	18330	100%	0.0	99%	KU820897.5
Select seq gb|KX247632.1|	Zika virus isolate MEX_I_7 polyprotein gene, complete cds	18330	18330	100%	0.0	99%	KX247632.1
Select seq gb|KX156775.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome	18330	18330	100%	0.0	99%	KX156775.1
Select seq gb|KX087102.1|	Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome	18330	18330	100%	0.0	99%	KX087102.1
Select seq gb|KU365778.1|	Zika virus strain BeH819015 polyprotein gene, complete cds	18330	18330	100%	0.0	99%	KU365778.1
Select seq gb|KU312312.1|	Zika virus isolate Z1106033 polyprotein gene, complete cds	18330	18330	100%	0.0	99%	KU312312.1
Select seq gb|KU922960.1|	Zika virus isolate MEX/InDRE/Sm/2016, complete genome	18327	18327	100%	0.0	99%	KU922960.1
Select seq gb|KX856011.1|	Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome	18321	18321	100%	0.0	99%	KX856011.1
Select seq gb|KX806557.1|	Zika virus isolate TS17-2016, complete genome	18321	18321	100%	0.0	99%	KX806557.1
Select seq gb|KX548902.1|	Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds	18321	18321	100%	0.0	99%	KX548902.1
Select seq gb|KX446951.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome	18321	18321	100%	0.0	99%	KX446951.1
Select seq gb|KU937936.1|	Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds	18321	18321	100%	0.0	99%	KU937936.1
Select seq gb|KU922923.1|	Zika virus isolate MEX/InDRE/Lm/2016, complete genome	18321	18321	100%	0.0	99%	KU922923.1
Select seq gb|KU501215.1|	Zika virus strain PRVABC59, complete genome	18321	18321	100%	0.0	99%	KU501215.1
Select seq gb|KX601168.1|	Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome	18318	18318	100%	0.0	99%	KX601168.1
Select seq gb|KX446950.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome	18318	18318	100%	0.0	99%	KX446950.1
Select seq gb|KX087101.2|	Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome	18318	18318	100%	0.0	99%	KX087101.2
Select seq gb|KU870645.1|	Zika virus isolate FB-GWUH-2016, complete genome	18318	18318	100%	0.0	99%	KU870645.1
Select seq gb|KX702400.1|	Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome	18312	18312	100%	0.0	99%	KX702400.1
Select seq gb|KX377337.1|	Zika virus strain PRVABC-59, complete genome	18312	18312	100%	0.0	99%	KX377337.1
Select seq gb|KX766029.1|	Zika virus isolate R116265, complete genome	18303	18303	100%	0.0	99%	KX766029.1
Select seq gb|KU820898.1|	Zika virus isolate GZ01 polyprotein gene, complete cds	18303	18303	100%	0.0	99%	KU820898.1
Select seq gb|KX056898.1|	Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds	18300	18300	100%	0.0	99%	KX056898.1
Select seq gb|KU955590.1|	Zika virus isolate Z16019 polyprotein gene, complete cds	18300	18300	100%	0.0	99%	KU955590.1
Select seq gb|KX766028.1|	Zika virus isolate R114916, complete genome	18296	18296	100%	0.0	99%	KX766028.1
Select seq gb|KU740184.2|	Zika virus isolate GD01 polyprotein gene, complete cds	18294	18294	100%	0.0	99%	KU740184.2
Select seq gb|KU761564.1|	Zika virus isolate GDZ16001 polyprotein gene, complete cds	18294	18294	100%	0.0	99%	KU761564.1
Select seq gb|KX117076.1|	Zika virus isolate Zhejiang04, complete genome	18291	18291	100%	0.0	99%	KX117076.1
Select seq gb|KX185891.1|	Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds	18282	18282	100%	0.0	99%	KX185891.1
Select seq gb|KU963796.1|	Zika virus isolate SZ-WIV01 polyprotein gene, complete cds	18282	18282	100%	0.0	99%	KU963796.1
Select seq gb|KX253996.1|	Zika virus isolate ZKC2/2016, complete genome	18276	18276	100%	0.0	99%	KX253996.1
Select seq gb|KU955589.1|	Zika virus isolate Z16006 polyprotein gene, complete cds	18276	18276	100%	0.0	99%	KU955589.1
Select seq gb|KU820899.2|	Zika virus isolate ZJ03, complete genome	18276	18276	100%	0.0	99%	KU820899.2
Select seq gb|KX266255.1|	Zika virus isolate ZIKV_SMGC-1, complete genome	18273	18273	100%	0.0	99%	KX266255.1
Select seq gb|KU866423.2|	Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds	18273	18273	100%	0.0	99%	KU866423.2
Select seq gb|KU940224.1|	Zika virus isolate Bahia09, partial genome	18258	18258	99%	0.0	99%	KU940224.1
Select seq gb|KU744693.1|	Zika virus isolate VE_Ganxian, complete genome	18137	18137	100%	0.0	99%	KU744693.1
Select seq gb|KX827309.1|	Zika virus isolate ZKA-16-291 polyprotein gene, complete cds	18114	18114	100%	0.0	99%	KX827309.1
Select seq gb|KX813683.1|	Zika virus isolate ZKA-16-097 polyprotein gene, complete cds	18101	18101	100%	0.0	99%	KX813683.1
Select seq gb|KU681081.3|	Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome	18047	18047	100%	0.0	99%	KU681081.3
Select seq gb|KX694532.1|	Zika virus strain ZIKV/Homo sapiens/THA/PLCal_ZV/2013, complete genome	17933	17933	100%	0.0	99%	KX694532.1
Select seq gb|KU955593.1|	Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome	17750	17750	100%	0.0	98%	KU955593.1
Select seq gb|JN860885.1|	Zika virus isolate FSS13025 polyprotein gene, partial cds	17748	17748	99%	0.0	98%	JN860885.1
Select seq gb|KF993678.1|	Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds	17703	17703	98%	0.0	99%	KF993678.1
Select seq gb|EU545988.1|	Zika virus polyprotein gene, complete cds	17594	17594	100%	0.0	98%	EU545988.1
Select seq gb|KU681082.3|	Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome	17447	17447	100%	0.0	98%	KU681082.3
Select seq gb|KX601167.1|	Zika virus strain ZIKV/Aedes sp./MYS/P6-740/1966, complete genome	16419	16419	100%	0.0	95%	KX601167.1
Select seq gb|HQ234499.1|	Zika virus isolate P6-740 polyprotein gene, partial cds	16411	16411	99%	0.0	95%	HQ234499.1
Select seq gb|KX694533.1|	Zika virus strain ZIKV/Aedes aegypti/MYS/P6-740/1966, complete genome	16410	16410	100%	0.0	95%	KX694533.1

[niman]

DOM_2016_BB-0115_SER

matches

Sequences producing significant alignments:

Select:AllNone Selected:0

AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments

Sequences producing significant alignments:

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
Select seq gb|KU853013.1|	Zika virus isolate Dominican Republic/2016/PD2, complete genome	18462	18462	100%	0.0	99%	KU853013.1
Select seq gb|KU853012.1|	Zika virus isolate Dominican Republic/2016/PD1, complete genome	18460	18460	100%	0.0	99%	KU853012.1
Select seq gb|KX842449.1|	Zika virus isolate ZIKV/Human/USA/2016/ZF10.UR-010 polyprotein gene, complete cds	18444	18444	100%	0.0	99%	KX842449.1
Select seq gb|KX838905.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM2-7719 polyprotein gene, complete cds	18438	18438	100%	0.0	99%	KX838905.1
Select seq gb|KX838904.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM1-7501 polyprotein gene, complete cds	18435	18435	100%	0.0	99%	KX838904.1
Select seq gb|KX832731.1|	Zika virus isolate ZIKV/Human/USA/2016/ZL2.SA-Hu0015 polyprotein gene, complete cds	18435	18435	100%	0.0	99%	KX832731.1
Select seq gb|KX673530.1|	Zika virus isolate PHE_semen_Guadeloupe, complete genome	18429	18429	100%	0.0	99%	KX673530.1
Select seq gb|KX838906.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM3-7729 polyprotein gene, complete cds	18420	18420	100%	0.0	99%	KX838906.1
Select seq gb|KX447510.1|	Zika virus isolate 1_0049_PF polyprotein gene, complete cds	18372	18372	100%	0.0	99%	KX447510.1
Select seq gb|KX280026.1|	Zika virus isolate Paraiba_01, complete genome	18366	18366	100%	0.0	99%	KX280026.1
Select seq gb|KX447512.1|	Zika virus isolate 1_0181_PF polyprotein gene, complete cds	18363	18363	100%	0.0	99%	KX447512.1
Select seq gb|KX369547.1|	Zika virus strain PF13/251013-18, complete genome	18363	18363	100%	0.0	99%	KX369547.1
Select seq gb|KU509998.3|	Zika virus strain Haiti/1225/2014, complete genome	18363	18363	100%	0.0	99%	KU509998.3
Select seq gb|KJ776791.2|	Zika virus strain H/PF/2013, complete genome	18357	18357	100%	0.0	99%	KJ776791.2
Select seq gb|KX447509.1|	Zika virus isolate 1_0087_PF polyprotein gene, complete cds	18357	18357	100%	0.0	99%	KX447509.1
Select seq gb|KU991811.1|	Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds	18357	18357	100%	0.0	99%	KU991811.1
Select seq gb|KU729217.2|	Zika virus isolate BeH823339 polyprotein gene, complete cds	18357	18357	100%	0.0	99%	KU729217.2
Select seq gb|KX447513.1|	Zika virus isolate 1_0134_PF polyprotein gene, complete cds	18354	18354	100%	0.0	99%	KX447513.1
Select seq gb|KX811222.1|	Zika virus isolate Brazil_2015_MG, complete genome	18348	18348	100%	0.0	99%	KX811222.1
Select seq gb|KX197205.1|	Zika virus isolate 9, complete genome	18348	18348	100%	0.0	99%	KX197205.1
Select seq gb|KX447515.1|	Zika virus isolate 1_0030_PF polyprotein gene, complete cds	18348	18348	100%	0.0	99%	KX447515.1
Select seq gb|KX447511.1|	Zika virus isolate 1_0015_PF polyprotein gene, complete cds	18348	18348	100%	0.0	99%	KX447511.1
Select seq gb|KU321639.1|	Zika virus strain ZikaSPH2015, complete genome	18348	18348	100%	0.0	99%	KU321639.1
Select seq gb|KX879604.1|	Zika virus isolate SN089, complete genome	18345	18345	100%	0.0	99%	KX879604.1
Select seq gb|KX447514.1|	Zika virus isolate 1_0035_PF polyprotein gene, complete cds	18345	18345	100%	0.0	99%	KX447514.1
Select seq gb|KX051563.1|	Zika virus isolate Haiti/1/2016, complete genome	18345	18345	100%	0.0	99%	KX051563.1
Select seq gb|KX447516.1|	Zika virus isolate 1_0111_PF polyprotein gene, complete cds	18339	18339	100%	0.0	99%	KX447516.1
Select seq gb|KU729218.1|	Zika virus isolate BeH828305 polyprotein gene, complete cds	18339	18339	100%	0.0	99%	KU729218.1
Select seq gb|KU707826.1|	Zika virus isolate SSABR1, complete genome	18339	18339	100%	0.0	99%	KU707826.1
Select seq gb|KU527068.1|	Zika virus strain Natal RGN, complete genome	18339	18339	100%	0.0	99%	KU527068.1
Select seq gb|KU365779.1|	Zika virus strain BeH819966 polyprotein gene, complete cds	18339	18339	100%	0.0	99%	KU365779.1
Select seq gb|KX879603.1|	Zika virus isolate SN062, complete genome	18336	18336	100%	0.0	99%	KX879603.1
Select seq gb|KX262887.1|	Zika virus isolate 103451, complete genome	18336	18336	100%	0.0	99%	KX262887.1
Select seq gb|KX197192.1|	Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome	18336	18336	100%	0.0	99%	KX197192.1
Select seq gb|KU926310.1|	Zika virus isolate Rio-S1, complete genome	18336	18336	100%	0.0	99%	KU926310.1
Select seq gb|KU926309.1|	Zika virus isolate Rio-U1, complete genome	18336	18336	100%	0.0	99%	KU926309.1
Select seq gb|KU940228.1|	Zika virus isolate Bahia07, partial genome	18330	18330	100%	0.0	99%	KU940228.1
Select seq gb|KX694534.1|	Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome	18327	18327	100%	0.0	99%	KX694534.1
Select seq gb|KX198135.1|	Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome	18327	18327	100%	0.0	99%	KX198135.1
Select seq gb|KU501217.1|	Zika virus strain 8375 polyprotein gene, complete cds	18327	18327	100%	0.0	99%	KU501217.1
Select seq gb|KU365780.1|	Zika virus strain BeH815744 polyprotein gene, complete cds	18327	18327	100%	0.0	99%	KU365780.1
Select seq gb|KU647676.1|	Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds	18321	18321	100%	0.0	99%	KU647676.1
Select seq gb|KU501216.1|	Zika virus strain 103344 polyprotein gene, complete cds	18321	18321	100%	0.0	99%	KU501216.1
Select seq gb|KU365777.1|	Zika virus strain BeH818995 polyprotein gene, complete cds	18321	18321	100%	0.0	99%	KU365777.1
Select seq gb|KX447517.1|	Zika virus isolate 1_0038_PF polyprotein gene, complete cds	18318	18318	100%	0.0	99%	KX447517.1
Select seq gb|KU758877.1|	Zika virus isolate 17271 polyprotein gene, complete cds	18318	18318	100%	0.0	99%	KU758877.1
Select seq gb|KX247646.1|	Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome	18318	18318	100%	0.0	99%	KX247646.1
Select seq gb|KX156776.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome	18318	18318	100%	0.0	99%	KX156776.1
Select seq gb|KU497555.1|	Zika virus isolate Brazil-ZKV2015, complete genome	18314	18314	99%	0.0	99%	KU497555.1
Select seq gb|KX520666.1|	Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds	18312	18312	100%	0.0	99%	KX520666.1
Select seq gb|KX156774.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome	18312	18312	100%	0.0	99%	KX156774.1
Select seq gb|KU820897.5|	Zika virus isolate FLR polyprotein gene, complete cds	18309	18309	100%	0.0	99%	KU820897.5
Select seq gb|KX247632.1|	Zika virus isolate MEX_I_7 polyprotein gene, complete cds	18309	18309	100%	0.0	99%	KX247632.1
Select seq gb|KX156775.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome	18309	18309	100%	0.0	99%	KX156775.1
Select seq gb|KX087102.1|	Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome	18309	18309	100%	0.0	99%	KX087102.1
Select seq gb|KU365778.1|	Zika virus strain BeH819015 polyprotein gene, complete cds	18309	18309	100%	0.0	99%	KU365778.1
Select seq gb|KU312312.1|	Zika virus isolate Z1106033 polyprotein gene, complete cds	18309	18309	100%	0.0	99%	KU312312.1
Select seq gb|KU922960.1|	Zika virus isolate MEX/InDRE/Sm/2016, complete genome	18303	18303	100%	0.0	99%	KU922960.1
Select seq gb|KX856011.1|	Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome	18300	18300	100%	0.0	99%	KX856011.1
Select seq gb|KX806557.1|	Zika virus isolate TS17-2016, complete genome	18300	18300	100%	0.0	99%	KX806557.1
Select seq gb|KX548902.1|	Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds	18300	18300	100%	0.0	99%	KX548902.1
Select seq gb|KX446951.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome	18300	18300	100%	0.0	99%	KX446951.1
Select seq gb|KU937936.1|	Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds	18300	18300	100%	0.0	99%	KU937936.1
Select seq gb|KU922923.1|	Zika virus isolate MEX/InDRE/Lm/2016, complete genome	18300	18300	100%	0.0	99%	KU922923.1
Select seq gb|KU501215.1|	Zika virus strain PRVABC59, complete genome	18300	18300	100%	0.0	99%	KU501215.1
Select seq gb|KX601168.1|	Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome	18294	18294	100%	0.0	99%	KX601168.1
Select seq gb|KX446950.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome	18294	18294	100%	0.0	99%	KX446950.1
Select seq gb|KX087101.2|	Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome	18294	18294	100%	0.0	99%	KX087101.2
Select seq gb|KU870645.1|	Zika virus isolate FB-GWUH-2016, complete genome	18294	18294	100%	0.0	99%	KU870645.1
Select seq gb|KX702400.1|	Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome	18291	18291	100%	0.0	99%	KX702400.1
Select seq gb|KX377337.1|	Zika virus strain PRVABC-59, complete genome	18291	18291	100%	0.0	99%	KX377337.1
Select seq gb|KX056898.1|	Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds	18285	18285	100%	0.0	99%	KX056898.1
Select seq gb|KU955590.1|	Zika virus isolate Z16019 polyprotein gene, complete cds	18285	18285	100%	0.0	99%	KU955590.1
Select seq gb|KX766029.1|	Zika virus isolate R116265, complete genome	18282	18282	100%	0.0	99%	KX766029.1
Select seq gb|KU820898.1|	Zika virus isolate GZ01 polyprotein gene, complete cds	18282	18282	100%	0.0	99%	KU820898.1
Select seq gb|KX766028.1|	Zika virus isolate R114916, complete genome	18274	18274	100%	0.0	99%	KX766028.1
Select seq gb|KU740184.2|	Zika virus isolate GD01 polyprotein gene, complete cds	18273	18273	100%	0.0	99%	KU740184.2
Select seq gb|KU761564.1|	Zika virus isolate GDZ16001 polyprotein gene, complete cds	18273	18273	100%	0.0	99%	KU761564.1
Select seq gb|KX117076.1|	Zika virus isolate Zhejiang04, complete genome	18267	18267	100%	0.0	99%	KX117076.1
Select seq gb|KX185891.1|	Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds	18258	18258	100%	0.0	99%	KX185891.1
Select seq gb|KU963796.1|	Zika virus isolate SZ-WIV01 polyprotein gene, complete cds	18258	18258	100%	0.0	99%	KU963796.1
Select seq gb|KX253996.1|	Zika virus isolate ZKC2/2016, complete genome	18254	18254	100%	0.0	99%	KX253996.1
Select seq gb|KU955589.1|	Zika virus isolate Z16006 polyprotein gene, complete cds	18254	18254	100%	0.0	99%	KU955589.1
Select seq gb|KU820899.2|	Zika virus isolate ZJ03, complete genome	18254	18254	100%	0.0	99%	KU820899.2
Select seq gb|KX266255.1|	Zika virus isolate ZIKV_SMGC-1, complete genome	18251	18251	100%	0.0	99%	KX266255.1
Select seq gb|KU866423.2|	Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds	18249	18249	100%	0.0	99%	KU866423.2
Select seq gb|KU940224.1|	Zika virus isolate Bahia09, partial genome	18236	18236	99%	0.0	99%	KU940224.1
Select seq gb|KU744693.1|	Zika virus isolate VE_Ganxian, complete genome	18123	18123	100%	0.0	99%	KU744693.1
Select seq gb|KX827309.1|	Zika virus isolate ZKA-16-291 polyprotein gene, complete cds	18101	18101	100%	0.0	99%	KX827309.1
Select seq gb|KX813683.1|	Zika virus isolate ZKA-16-097 polyprotein gene, complete cds	18096	18096	100%	0.0	99%	KX813683.1
Select seq gb|KU681081.3|	Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome	18024	18024	100%	0.0	99%	KU681081.3
Select seq gb|KX694532.1|	Zika virus strain ZIKV/Homo sapiens/THA/PLCal_ZV/2013, complete genome	17903	17903	100%	0.0	99%	KX694532.1
Select seq gb|KU955593.1|	Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome	17726	17726	100%	0.0	98%	KU955593.1
Select seq gb|JN860885.1|	Zika virus isolate FSS13025 polyprotein gene, partial cds	17726	17726	99%	0.0	98%	JN860885.1
Select seq gb|KF993678.1|	Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds	17670	17670	98%	0.0	99%	KF993678.1
Select seq gb|EU545988.1|	Zika virus polyprotein gene, complete cds	17562	17562	100%	0.0	98%	EU545988.1
Select seq gb|KU681082.3|	Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome	17416	17416	100%	0.0	98%	KU681082.3
Select seq gb|KX601167.1|	Zika virus strain ZIKV/Aedes sp./MYS/P6-740/1966, complete genome	16388	16388	100%	0.0	95%	KX601167.1
Select seq gb|KX694533.1|	Zika virus strain ZIKV/Aedes aegypti/MYS/P6-740/1966, complete genome	16379	16379	100%	0.0	95%	KX694533.1
Select seq gb|HQ234499.1|	Zika virus isolate P6-740 polyprotein gene, partial cds	16379	16379	99%	0.0	95%	HQ234499.1

[niman]

[niman]

1.

Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds

10,365 bp linear RNA

Accession:

 

KX922703.1

 

GI:

 

1071930510

GenBankFASTAGraphics

Select item 10719305122.

Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds

10,609 bp linear RNA

Accession:

 

KX922704.1

 

GI:

 

1071930512

GenBankFASTAGraphics

Select item 10719305143.

Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds

10,609 bp linear RNA

Accession:

 

KX922705.1

 

GI:

 

1071930514

GenBankFASTAGraphics

Select item 10719305164.

Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds

10,610 bp linear RNA

Accession:

 

KX922706.1

 

GI:

 

1071930516

GenBankFASTAGraphics

Select item 10719305185.

Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds

10,609 bp linear RNA

Accession:

 

KX922707.1

 

GI:

 

1071930518

GenBankFASTAGraphics

Select item 10719305206.

Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds

10,606 bp linear RNA

Accession:

 

KX922708.1

 

GI:

 

1071930520

GenBankFASTAGraphics

[niman]

DOM_2016_BB-0076_SER matches

Sequences producing significant alignments:

Select:AllNone Selected:0

AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments

Sequences producing significant alignments:

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
Select seq gb|KX922703.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds	4543	14628	79%	0.0	99%	KX922703.1
Select seq gb|KX842449.2|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds	4543	14642	79%	0.0	99%	KX842449.2
Select seq gb|KX838906.2|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds	4538	14633	79%	0.0	99%	KX838906.2
Select seq gb|KX838905.2|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds	4538	14628	79%	0.0	99%	KX838905.2
Select seq gb|KX838904.2|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds	4538	14626	79%	0.0	99%	KX838904.2
Select seq gb|KX832731.1|	Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds	4538	14630	79%	0.0	99%	KX832731.1
Select seq gb|KU853012.1|	Zika virus isolate Dominican Republic/2016/PD1, complete genome	4538	14653	79%	0.0	99%	KU853012.1
Select seq gb|KX922707.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds	4534	14632	79%	0.0	99%	KX922707.1
Select seq gb|KX922704.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds	4534	14630	79%	0.0	99%	KX922704.1
Select seq gb|KX673530.1|	Zika virus isolate PHE_semen_Guadeloupe, complete genome	4534	14624	79%	0.0	99%	KX673530.1
Select seq gb|KU853013.1|	Zika virus isolate Dominican Republic/2016/PD2, complete genome	4534	14651	79%	0.0	99%	KU853013.1
Select seq gb|KX922708.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds	4529	14615	79%	0.0	99%	KX922708.1
Select seq gb|KX922706.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds	4529	14624	79%	0.0	99%	KX922706.1
Select seq gb|KX922705.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds	4527	14619	79%	0.0	99%	KX922705.1
Select seq gb|KU991811.1|	Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds	4520	14599	79%	0.0	99%	KU991811.1
Select seq gb|KJ776791.2|	Zika virus strain H/PF/2013, complete genome	4516	14597	79%	0.0	99%	KJ776791.2
Select seq gb|KX447519.1|	Zika virus isolate 1_0199_PF polyprotein gene, partial cds	4516	12440	67%	0.0	99%	KX447519.1
Select seq gb|KX447517.1|	Zika virus isolate 1_0038_PF polyprotein gene, complete cds	4516	14556	79%	0.0	99%	KX447517.1
Select seq gb|KX447516.1|	Zika virus isolate 1_0111_PF polyprotein gene, complete cds	4516	14574	79%	0.0	99%	KX447516.1
Select seq gb|KX447512.1|	Zika virus isolate 1_0181_PF polyprotein gene, complete cds	4516	14594	79%	0.0	99%	KX447512.1
Select seq gb|KX447509.1|	Zika virus isolate 1_0087_PF polyprotein gene, complete cds	4516	14588	79%	0.0	99%	KX447509.1
Select seq gb|KX369547.1|	Zika virus strain PF13/251013-18, complete genome	4516	14594	79%	0.0	99%	KX369547.1
Select seq gb|KU729217.2|	Zika virus isolate BeH823339 polyprotein gene, complete cds	4516	14574	79%	0.0	99%	KU729217.2
Select seq gb|KX893855.1|	Zika virus strain Zika virus/Homo sapiens/VEN/UF-2/2016, complete genome	4511	14518	79%	0.0	99%	KX893855.1
Select seq gb|KU820897.5|	Zika virus isolate FLR polyprotein gene, complete cds	4511	14532	79%	0.0	99%	KU820897.5
Select seq gb|KX702400.1|	Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome	4511	14514	79%	0.0	99%	KX702400.1
Select seq gb|KX447518.1|	Zika virus isolate 1_0117_PF polyprotein gene, partial cds	4511	12431	67%	0.0	99%	KX447518.1
Select seq gb|KX447515.1|	Zika virus isolate 1_0030_PF polyprotein gene, complete cds	4511	14579	79%	0.0	99%	KX447515.1
Select seq gb|KX447514.1|	Zika virus isolate 1_0035_PF polyprotein gene, complete cds	4511	14579	79%	0.0	99%	KX447514.1
Select seq gb|KX447513.1|	Zika virus isolate 1_0134_PF polyprotein gene, complete cds	4511	14592	79%	0.0	99%	KX447513.1
Select seq gb|KX447511.1|	Zika virus isolate 1_0015_PF polyprotein gene, complete cds	4511	14581	79%	0.0	99%	KX447511.1
Select seq gb|KX447510.1|	Zika virus isolate 1_0049_PF polyprotein gene, complete cds	4511	14588	79%	0.0	99%	KX447510.1
Select seq gb|KX247646.1|	Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome	4511	14541	79%	0.0	99%	KX247646.1
Select seq gb|KX198135.1|	Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome	4511	14545	79%	0.0	99%	KX198135.1
Select seq gb|KX156776.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome	4511	14540	79%	0.0	99%	KX156776.1
Select seq gb|KX156774.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome	4511	14534	79%	0.0	99%	KX156774.1
Select seq gb|KX087102.1|	Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome	4511	14532	79%	0.0	99%	KX087102.1
Select seq gb|KU922960.1|	Zika virus isolate MEX/InDRE/Sm/2016, complete genome	4511	14529	79%	0.0	99%	KU922960.1
Select seq gb|KU922923.1|	Zika virus isolate MEX/InDRE/Lm/2016, complete genome	4511	14525	79%	0.0	99%	KU922923.1
Select seq gb|KU497555.1|	Zika virus isolate Brazil-ZKV2015, complete genome	4511	14552	79%	0.0	99%	KU497555.1
Select seq gb|KU527068.1|	Zika virus strain Natal RGN, complete genome	4511	14563	79%	0.0	99%	KU527068.1
Select seq gb|KU647676.1|	Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds	4511	14541	79%	0.0	99%	KU647676.1
Select seq gb|KX879603.1|	Zika virus isolate SN062, complete genome	4507	14565	79%	0.0	99%	KX879603.1
Select seq gb|KX548902.1|	Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds	4507	14534	79%	0.0	99%	KX548902.1
Select seq gb|KX280026.1|	Zika virus isolate Paraiba_01, complete genome	4507	14579	79%	0.0	99%	KX280026.1
Select seq gb|KX156775.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome	4507	14536	79%	0.0	99%	KX156775.1
Select seq gb|KU926309.1|	Zika virus isolate Rio-U1, complete genome	4507	14567	79%	0.0	99%	KU926309.1
Select seq gb|KU729218.1|	Zika virus isolate BeH828305 polyprotein gene, complete cds	4507	14570	79%	0.0	99%	KU729218.1
Select seq gb|KU707826.1|	Zika virus isolate SSABR1, complete genome	4507	14563	79%	0.0	99%	KU707826.1
Select seq gb|KU365779.1|	Zika virus strain BeH819966 polyprotein gene, complete cds	4507	14563	79%	0.0	99%	KU365779.1
Select seq gb|KX051563.1|	Zika virus isolate Haiti/1/2016, complete genome	4504	14574	79%	0.0	99%	KX051563.1
Select seq gb|KU509998.3|	Zika virus strain Haiti/1225/2014, complete genome	4504	14586	79%	0.0	99%	KU509998.3
Select seq gb|KX879604.1|	Zika virus isolate SN089, complete genome	4502	14568	79%	0.0	99%	KX879604.1
Select seq gb|KX811222.1|	Zika virus isolate Brazil_2015_MG, complete genome	4502	14565	79%	0.0	99%	KX811222.1
Select seq gb|KX197205.1|	Zika virus isolate 9, complete genome	4502	14574	79%	0.0	99%	KX197205.1
Select seq gb|KX576684.1|	Zika virus vector pZIKV-ICD, complete sequence	4502	14575	79%	0.0	99%	KX576684.1
Select seq gb|KU321639.1|	Zika virus strain ZikaSPH2015, complete genome	4502	14576	79%	0.0	99%	KU321639.1
Select seq gb|KX694534.1|	Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome	4500	14570	79%	0.0	99%	KX694534.1
Select seq gb|KX262887.1|	Zika virus isolate 103451, complete genome	4500	14565	79%	0.0	99%	KX262887.1
Select seq gb|KX197192.1|	Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome	4500	14567	79%	0.0	99%	KX197192.1
Select seq gb|KU501217.1|	Zika virus strain 8375 polyprotein gene, complete cds	4498	14567	79%	0.0	99%	KU501217.1
Select seq gb|KU365780.1|	Zika virus strain BeH815744 polyprotein gene, complete cds	4498	14550	79%	0.0	99%	KU365780.1
Select seq gb|KU365777.1|	Zika virus strain BeH818995 polyprotein gene, complete cds	4498	14545	79%	0.0	99%	KU365777.1
Select seq gb|KX856011.1|	Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome	4495	14547	79%	0.0	99%	KX856011.1
Select seq gb|KX446950.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome	4495	14541	79%	0.0	99%	KX446950.1
Select seq gb|KU758877.1|	Zika virus isolate 17271 polyprotein gene, complete cds	4495	14563	79%	0.0	99%	KU758877.1
Select seq gb|KU870645.1|	Zika virus isolate FB-GWUH-2016, complete genome	4495	14536	79%	0.0	99%	KU870645.1
Select seq gb|KU926310.1|	Zika virus isolate Rio-S1, complete genome	4495	14558	79%	0.0	99%	KU926310.1
Select seq gb|KU312312.1|	Zika virus isolate Z1106033 polyprotein gene, complete cds	4495	14552	79%	0.0	99%	KU312312.1
Select seq gb|KX520666.1|	Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds	4493	14541	79%	0.0	99%	KX520666.1
Select seq gb|KU940228.1|	Zika virus isolate Bahia07, partial genome	4493	14556	79%	0.0	99%	KU940228.1
Select seq gb|KU940224.1|	Zika virus isolate Bahia09, partial genome	4493	14466	78%	0.0	99%	KU940224.1
Select seq gb|KU820898.1|	Zika virus isolate GZ01 polyprotein gene, complete cds	4493	14525	79%	0.0	99%	KU820898.1
Select seq gb|KU740184.2|	Zika virus isolate GD01 polyprotein gene, complete cds	4493	14516	79%	0.0	99%	KU740184.2
Select seq gb|KU761564.1|	Zika virus isolate GDZ16001 polyprotein gene, complete cds	4493	14516	79%	0.0	99%	KU761564.1
Select seq gb|KU501216.1|	Zika virus strain 103344 polyprotein gene, complete cds	4493	14561	79%	0.0	99%	KU501216.1
Select seq gb|KU365778.1|	Zika virus strain BeH819015 polyprotein gene, complete cds	4493	14547	79%	0.0	99%	KU365778.1
Select seq gb|KX766029.1|	Zika virus isolate R116265, complete genome	4491	14527	79%	0.0	99%	KX766029.1
Select seq gb|KX806557.1|	Zika virus isolate TS17-2016, complete genome	4489	14529	79%	0.0	99%	KX806557.1
Select seq gb|KX766028.1|	Zika virus isolate R114916, complete genome	4489	14518	79%	0.0	99%	KX766028.1
Select seq gb|KX266255.1|	Zika virus isolate ZIKV_SMGC-1, complete genome	4489	14500	79%	0.0	99%	KX266255.1
Select seq gb|KX601168.1|	Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome	4489	14534	79%	0.0	99%	KX601168.1
Select seq gb|KX446951.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome	4489	14543	79%	0.0	99%	KX446951.1
Select seq gb|KX377337.1|	Zika virus strain PRVABC-59, complete genome	4489	14536	79%	0.0	99%	KX377337.1
Select seq gb|KU866423.2|	Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds	4489	14494	79%	0.0	99%	KU866423.2
Select seq gb|KX253996.1|	Zika virus isolate ZKC2/2016, complete genome	4489	14500	79%	0.0	99%	KX253996.1
Select seq gb|KX247632.1|	Zika virus isolate MEX_I_7 polyprotein gene, complete cds	4489	14550	79%	0.0	99%	KX247632.1
Select seq gb|KX087101.2|	Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome	4489	14534	79%	0.0	99%	KX087101.2
Select seq gb|KX185891.1|	Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds	4489	14505	79%	0.0	99%	KX185891.1
Select seq gb|KU937936.1|	Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds	4489	14541	79%	0.0	99%	KU937936.1
Select seq gb|KX117076.1|	Zika virus isolate Zhejiang04, complete genome	4489	14509	79%	0.0	99%	KX117076.1
Select seq gb|KU963796.1|	Zika virus isolate SZ-WIV01 polyprotein gene, complete cds	4489	14505	79%	0.0	99%	KU963796.1
Select seq gb|KU955589.1|	Zika virus isolate Z16006 polyprotein gene, complete cds	4489	14500	79%	0.0	99%	KU955589.1
Select seq gb|KU820899.2|	Zika virus isolate ZJ03, complete genome	4489	14500	79%	0.0	99%	KU820899.2
Select seq gb|KU501215.1|	Zika virus strain PRVABC59, complete genome	4489	14540	79%	0.0	99%	KU501215.1
Select seq gb|KX056898.1|	Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds	4484	14512	79%	0.0	99%	KX056898.1
Select seq gb|KU955590.1|	Zika virus isolate Z16019 polyprotein gene, complete cds	4484	14507	79%	0.0	99%	KU955590.1
Select seq gb|KU744693.1|	Zika virus isolate VE_Ganxian, complete genome	4448	14379	79%	0.0	99%	KU744693.1
Select seq gb|KX827309.1|	Zika virus isolate ZKA-16-291 polyprotein gene, complete cds	4446	14379	79%	0.0	99%	KX827309.1
Select seq gb|KX813683.1|	Zika virus isolate ZKA-16-097 polyprotein gene, complete cds	4439	14365	79%	0.0	99%	KX813683.1

[niman]

DOM_2016_BB-0115_SER matches

Sequences producing significant alignments:

Select:AllNone Selected:0

AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments

Sequences producing significant alignments:

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
Select seq gb|KU853013.1|	Zika virus isolate Dominican Republic/2016/PD2, complete genome	18462	18462	100%	0.0	99%	KU853013.1
Select seq gb|KU853012.1|	Zika virus isolate Dominican Republic/2016/PD1, complete genome	18460	18460	100%	0.0	99%	KU853012.1
Select seq gb|KX842449.2|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds	18447	18447	100%	0.0	99%	KX842449.2
Select seq gb|KX922707.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds	18438	18438	100%	0.0	99%	KX922707.1
Select seq gb|KX922703.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds	18435	18435	100%	0.0	99%	KX922703.1
Select seq gb|KX838905.2|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds	18435	18435	100%	0.0	99%	KX838905.2
Select seq gb|KX832731.1|	Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds	18435	18435	100%	0.0	99%	KX832731.1
Select seq gb|KX922706.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds	18431	18431	100%	0.0	99%	KX922706.1
Select seq gb|KX922704.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds	18429	18429	100%	0.0	99%	KX922704.1
Select seq gb|KX673530.1|	Zika virus isolate PHE_semen_Guadeloupe, complete genome	18429	18429	100%	0.0	99%	KX673530.1
Select seq gb|KX838906.2|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds	18426	18426	100%	0.0	99%	KX838906.2
Select seq gb|KX838904.2|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds	18424	18424	100%	0.0	99%	KX838904.2
Select seq gb|KX922705.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds	18413	18413	100%	0.0	99%	KX922705.1
Select seq gb|KX922708.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds	18408	18408	100%	0.0	99%	KX922708.1
Select seq gb|KX447510.1|	Zika virus isolate 1_0049_PF polyprotein gene, complete cds	18372	18372	100%	0.0	99%	KX447510.1
Select seq gb|KX280026.1|	Zika virus isolate Paraiba_01, complete genome	18366	18366	100%	0.0	99%	KX280026.1
Select seq gb|KX447512.1|	Zika virus isolate 1_0181_PF polyprotein gene, complete cds	18363	18363	100%	0.0	99%	KX447512.1
Select seq gb|KX369547.1|	Zika virus strain PF13/251013-18, complete genome	18363	18363	100%	0.0	99%	KX369547.1
Select seq gb|KU509998.3|	Zika virus strain Haiti/1225/2014, complete genome	18363	18363	100%	0.0	99%	KU509998.3
Select seq gb|KJ776791.2|	Zika virus strain H/PF/2013, complete genome	18357	18357	100%	0.0	99%	KJ776791.2
Select seq gb|KX447509.1|	Zika virus isolate 1_0087_PF polyprotein gene, complete cds	18357	18357	100%	0.0	99%	KX447509.1
Select seq gb|KU991811.1|	Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds	18357	18357	100%	0.0	99%	KU991811.1
Select seq gb|KU729217.2|	Zika virus isolate BeH823339 polyprotein gene, complete cds	18357	18357	100%	0.0	99%	KU729217.2
Select seq gb|KX447513.1|	Zika virus isolate 1_0134_PF polyprotein gene, complete cds	18354	18354	100%	0.0	99%	KX447513.1
Select seq gb|KX811222.1|	Zika virus isolate Brazil_2015_MG, complete genome	18348	18348	100%	0.0	99%	KX811222.1
Select seq gb|KX197205.1|	Zika virus isolate 9, complete genome	18348	18348	100%	0.0	99%	KX197205.1
Select seq gb|KX447515.1|	Zika virus isolate 1_0030_PF polyprotein gene, complete cds	18348	18348	100%	0.0	99%	KX447515.1
Select seq gb|KX447511.1|	Zika virus isolate 1_0015_PF polyprotein gene, complete cds	18348	18348	100%	0.0	99%	KX447511.1
Select seq gb|KU321639.1|	Zika virus strain ZikaSPH2015, complete genome	18348	18348	100%	0.0	99%	KU321639.1
Select seq gb|KX879604.1|	Zika virus isolate SN089, complete genome	18345	18345	100%	0.0	99%	KX879604.1
Select seq gb|KX447514.1|	Zika virus isolate 1_0035_PF polyprotein gene, complete cds	18345	18345	100%	0.0	99%	KX447514.1
Select seq gb|KX051563.1|	Zika virus isolate Haiti/1/2016, complete genome	18345	18345	100%	0.0	99%	KX051563.1
Select seq gb|KX447516.1|	Zika virus isolate 1_0111_PF polyprotein gene, complete cds	18339	18339	100%	0.0	99%	KX447516.1
Select seq gb|KU729218.1|	Zika virus isolate BeH828305 polyprotein gene, complete cds	18339	18339	100%	0.0	99%	KU729218.1
Select seq gb|KU707826.1|	Zika virus isolate SSABR1, complete genome	18339	18339	100%	0.0	99%	KU707826.1
Select seq gb|KU527068.1|	Zika virus strain Natal RGN, complete genome	18339	18339	100%	0.0	99%	KU527068.1
Select seq gb|KU365779.1|	Zika virus strain BeH819966 polyprotein gene, complete cds	18339	18339	100%	0.0	99%	KU365779.1
Select seq gb|KX879603.1|	Zika virus isolate SN062, complete genome	18336	18336	100%	0.0	99%	KX879603.1
Select seq gb|KX262887.1|	Zika virus isolate 103451, complete genome	18336	18336	100%	0.0	99%	KX262887.1
Select seq gb|KX197192.1|	Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome	18336	18336	100%	0.0	99%	KX197192.1
Select seq gb|KU926310.1|	Zika virus isolate Rio-S1, complete genome	18336	18336	100%	0.0	99%	KU926310.1
Select seq gb|KU926309.1|	Zika virus isolate Rio-U1, complete genome	18336	18336	100%	0.0	99%	KU926309.1
Select seq gb|KU940228.1|	Zika virus isolate Bahia07, partial genome	18330	18330	100%	0.0	99%	KU940228.1
Select seq gb|KX694534.1|	Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome	18327	18327	100%	0.0	99%	KX694534.1
Select seq gb|KX198135.1|	Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome	18327	18327	100%	0.0	99%	KX198135.1
Select seq gb|KU501217.1|	Zika virus strain 8375 polyprotein gene, complete cds	18327	18327	100%	0.0	99%	KU501217.1
Select seq gb|KU365780.1|	Zika virus strain BeH815744 polyprotein gene, complete cds	18327	18327	100%	0.0	99%	KU365780.1
Select seq gb|KU647676.1|	Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds	18321	18321	100%	0.0	99%	KU647676.1
Select seq gb|KU501216.1|	Zika virus strain 103344 polyprotein gene, complete cds	18321	18321	100%	0.0	99%	KU501216.1
Select seq gb|KU365777.1|	Zika virus strain BeH818995 polyprotein gene, complete cds	18321	18321	100%	0.0	99%	KU365777.1
Select seq gb|KX447517.1|	Zika virus isolate 1_0038_PF polyprotein gene, complete cds	18318	18318	100%	0.0	99%	KX447517.1
Select seq gb|KU758877.1|	Zika virus isolate 17271 polyprotein gene, complete cds	18318	18318	100%	0.0	99%	KU758877.1
Select seq gb|KX247646.1|	Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome	18318	18318	100%	0.0	99%	KX247646.1
Select seq gb|KX156776.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome	18318	18318	100%	0.0	99%	KX156776.1
Select seq gb|KU497555.1|	Zika virus isolate Brazil-ZKV2015, complete genome	18314	18314	99%	0.0	99%	KU497555.1
Select seq gb|KX520666.1|	Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds	18312	18312	100%	0.0	99%	KX520666.1
Select seq gb|KX156774.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome	18312	18312	100%	0.0	99%	KX156774.1
Select seq gb|KU820897.5|	Zika virus isolate FLR polyprotein gene, complete cds	18309	18309	100%	0.0	99%	KU820897.5
Select seq gb|KX247632.1|	Zika virus isolate MEX_I_7 polyprotein gene, complete cds	18309	18309	100%	0.0	99%	KX247632.1
Select seq gb|KX156775.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome	18309	18309	100%	0.0	99%	KX156775.1
Select seq gb|KX087102.1|	Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome	18309	18309	100%	0.0	99%	KX087102.1
Select seq gb|KU365778.1|	Zika virus strain BeH819015 polyprotein gene, complete cds	18309	18309	100%	0.0	99%	KU365778.1
Select seq gb|KU312312.1|	Zika virus isolate Z1106033 polyprotein gene, complete cds	18309	18309	100%	0.0	99%	KU312312.1
Select seq gb|KU922960.1|	Zika virus isolate MEX/InDRE/Sm/2016, complete genome	18303	18303	100%	0.0	99%	KU922960.1
Select seq gb|KX856011.1|	Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome	18300	18300	100%	0.0	99%	KX856011.1
Select seq gb|KX806557.1|	Zika virus isolate TS17-2016, complete genome	18300	18300	100%	0.0	99%	KX806557.1
Select seq gb|KX548902.1|	Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds	18300	18300	100%	0.0	99%	KX548902.1
Select seq gb|KX446951.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome	18300	18300	100%	0.0	99%	KX446951.1
Select seq gb|KU937936.1|	Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds	18300	18300	100%	0.0	99%	KU937936.1
Select seq gb|KU922923.1|	Zika virus isolate MEX/InDRE/Lm/2016, complete genome	18300	18300	100%	0.0	99%	KU922923.1
Select seq gb|KU501215.1|	Zika virus strain PRVABC59, complete genome	18300	18300	100%	0.0	99%	KU501215.1
Select seq gb|KX893855.1|	Zika virus strain Zika virus/Homo sapiens/VEN/UF-2/2016, complete genome	18294	18294	100%	0.0	99%	KX893855.1
Select seq gb|KX601168.1|	Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome	18294	18294	100%	0.0	99%	KX601168.1
Select seq gb|KX446950.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome	18294	18294	100%	0.0	99%	KX446950.1
Select seq gb|KX087101.2|	Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome	18294	18294	100%	0.0	99%	KX087101.2
Select seq gb|KU870645.1|	Zika virus isolate FB-GWUH-2016, complete genome	18294	18294	100%	0.0	99%	KU870645.1
Select seq gb|KX702400.1|	Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome	18291	18291	100%	0.0	99%	KX702400.1
Select seq gb|KX377337.1|	Zika virus strain PRVABC-59, complete genome	18291	18291	100%	0.0	99%	KX377337.1
Select seq gb|KX056898.1|	Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds	18285	18285	100%	0.0	99%	KX056898.1
Select seq gb|KU955590.1|	Zika virus isolate Z16019 polyprotein gene, complete cds	18285	18285	100%	0.0	99%	KU955590.1
Select seq gb|KX766029.1|	Zika virus isolate R116265, complete genome	18282	18282	100%	0.0	99%	KX766029.1
Select seq gb|KU820898.1|	Zika virus isolate GZ01 polyprotein gene, complete cds	18282	18282	100%	0.0	99%	KU820898.1
Select seq gb|KX766028.1|	Zika virus isolate R114916, complete genome	18274	18274	100%	0.0	99%	KX766028.1
Select seq gb|KU740184.2|	Zika virus isolate GD01 polyprotein gene, complete cds	18273	18273	100%	0.0	99%	KU740184.2
Select seq gb|KU761564.1|	Zika virus isolate GDZ16001 polyprotein gene, complete cds	18273	18273	100%	0.0	99%	KU761564.1
Select seq gb|KX117076.1|	Zika virus isolate Zhejiang04, complete genome	18267	18267	100%	0.0	99%	KX117076.1
Select seq gb|KX185891.1|	Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds	18258	18258	100%	0.0	99%	KX185891.1
Select seq gb|KU963796.1|	Zika virus isolate SZ-WIV01 polyprotein gene, complete cds	18258	18258	100%	0.0	99%	KU963796.1
Select seq gb|KX253996.1|	Zika virus isolate ZKC2/2016, complete genome	18254	18254	100%	0.0	99%	KX253996.1
Select seq gb|KU955589.1|	Zika virus isolate Z16006 polyprotein gene, complete cds	18254	18254	100%	0.0	99%	KU955589.1
Select seq gb|KU820899.2|	Zika virus isolate ZJ03, complete genome	18254	18254	100%	0.0	99%	KU820899.2
Select seq gb|KX266255.1|	Zika virus isolate ZIKV_SMGC-1, complete genome	18251	18251	100%	0.0	99%	KX266255.1
Select seq gb|KU866423.2|	Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds	18249	18249	100%	0.0	99%	KU866423.2
Select seq gb|KU940224.1|	Zika virus isolate Bahia09, partial genome	18236	18236	99%	0.0	99%	KU940224.1
Select seq gb|KU744693.1|	Zika virus isolate VE_Ganxian, complete genome	18123	18123	100%	0.0	99%	KU744693.1
Select seq gb|KX827309.1|	Zika virus isolate ZKA-16-291 polyprotein gene, complete cds	18101	18101	100%	0.0	99%	KX827309.1
Select seq gb|KX813683.1|	Zika virus isolate ZKA-16-097 polyprotein gene, complete cds	18096	18096	100%	0.0	99%	KX813683.1
Select seq gb|KU681081.3|	Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome	18024	18024	100%	0.0	99%	KU681081.3
Select seq gb|KX694532.1|	Zika virus strain ZIKV/Homo sapiens/THA/PLCal_ZV/2013, complete genome	17903	17903	100%	0.0	99%	KX694532.1
Select seq gb|JN860885.1|	Zika virus isolate FSS13025 polyprotein gene, partial cds	17726	17726	99%	0.0	98%	JN860885.1

[niman]

DOM_2016_BB-0180_SER match

Sequences producing significant alignments:

Select:AllNone Selected:0

AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments

Sequences producing significant alignments:

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
Select seq gb|KU853013.1|	Zika virus isolate Dominican Republic/2016/PD2, complete genome	18474	18474	100%	0.0	99%	KU853013.1
Select seq gb|KU853012.1|	Zika virus isolate Dominican Republic/2016/PD1, complete genome	18474	18474	100%	0.0	99%	KU853012.1
Select seq gb|KX842449.2|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds	18462	18462	100%	0.0	99%	KX842449.2
Select seq gb|KX922707.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds	18453	18453	100%	0.0	99%	KX922707.1
Select seq gb|KX922703.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds	18447	18447	100%	0.0	99%	KX922703.1
Select seq gb|KX838906.2|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds	18447	18447	100%	0.0	99%	KX838906.2
Select seq gb|KX838905.2|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds	18447	18447	100%	0.0	99%	KX838905.2
Select seq gb|KX832731.1|	Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds	18447	18447	100%	0.0	99%	KX832731.1
Select seq gb|KX922706.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds	18446	18446	100%	0.0	99%	KX922706.1
Select seq gb|KX922704.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds	18444	18444	100%	0.0	99%	KX922704.1
Select seq gb|KX673530.1|	Zika virus isolate PHE_semen_Guadeloupe, complete genome	18444	18444	100%	0.0	99%	KX673530.1
Select seq gb|KX838904.2|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds	18438	18438	100%	0.0	99%	KX838904.2
Select seq gb|KX922705.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds	18437	18437	100%	0.0	99%	KX922705.1
Select seq gb|KX922708.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds	18429	18429	100%	0.0	99%	KX922708.1
Select seq gb|KX447510.1|	Zika virus isolate 1_0049_PF polyprotein gene, complete cds	18393	18393	100%	0.0	99%	KX447510.1
Select seq gb|KX280026.1|	Zika virus isolate Paraiba_01, complete genome	18390	18390	100%	0.0	99%	KX280026.1
Select seq gb|KX447512.1|	Zika virus isolate 1_0181_PF polyprotein gene, complete cds	18384	18384	100%	0.0	99%	KX447512.1
Select seq gb|KX369547.1|	Zika virus strain PF13/251013-18, complete genome	18384	18384	100%	0.0	99%	KX369547.1
Select seq gb|KU509998.3|	Zika virus strain Haiti/1225/2014, complete genome	18384	18384	100%	0.0	99%	KU509998.3
Select seq gb|KJ776791.2|	Zika virus strain H/PF/2013, complete genome	18381	18381	100%	0.0	99%	KJ776791.2
Select seq gb|KX447509.1|	Zika virus isolate 1_0087_PF polyprotein gene, complete cds	18381	18381	100%	0.0	99%	KX447509.1
Select seq gb|KU991811.1|	Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds	18381	18381	100%	0.0	99%	KU991811.1
Select seq gb|KU729217.2|	Zika virus isolate BeH823339 polyprotein gene, complete cds	18381	18381	100%	0.0	99%	KU729217.2
Select seq gb|KX447513.1|	Zika virus isolate 1_0134_PF polyprotein gene, complete cds	18375	18375	100%	0.0	99%	KX447513.1
Select seq gb|KX811222.1|	Zika virus isolate Brazil_2015_MG, complete genome	18372	18372	100%	0.0	99%	KX811222.1
Select seq gb|KX197205.1|	Zika virus isolate 9, complete genome	18372	18372	100%	0.0	99%	KX197205.1
Select seq gb|KX447515.1|	Zika virus isolate 1_0030_PF polyprotein gene, complete cds	18372	18372	100%	0.0	99%	KX447515.1
Select seq gb|KX447511.1|	Zika virus isolate 1_0015_PF polyprotein gene, complete cds	18372	18372	100%	0.0	99%	KX447511.1
Select seq gb|KU321639.1|	Zika virus strain ZikaSPH2015, complete genome	18372	18372	100%	0.0	99%	KU321639.1
Select seq gb|KX879604.1|	Zika virus isolate SN089, complete genome	18366	18366	100%	0.0	99%	KX879604.1
Select seq gb|KX447514.1|	Zika virus isolate 1_0035_PF polyprotein gene, complete cds	18366	18366	100%	0.0	99%	KX447514.1
Select seq gb|KX051563.1|	Zika virus isolate Haiti/1/2016, complete genome	18366	18366	100%	0.0	99%	KX051563.1
Select seq gb|KX447516.1|	Zika virus isolate 1_0111_PF polyprotein gene, complete cds	18363	18363	100%	0.0	99%	KX447516.1
Select seq gb|KU729218.1|	Zika virus isolate BeH828305 polyprotein gene, complete cds	18363	18363	100%	0.0	99%	KU729218.1
Select seq gb|KU707826.1|	Zika virus isolate SSABR1, complete genome	18363	18363	100%	0.0	99%	KU707826.1
Select seq gb|KU527068.1|	Zika virus strain Natal RGN, complete genome	18363	18363	100%	0.0	99%	KU527068.1
Select seq gb|KU365779.1|	Zika virus strain BeH819966 polyprotein gene, complete cds	18363	18363	100%	0.0	99%	KU365779.1
Select seq gb|KX879603.1|	Zika virus isolate SN062, complete genome	18357	18357	100%	0.0	99%	KX879603.1
Select seq gb|KX262887.1|	Zika virus isolate 103451, complete genome	18357	18357	100%	0.0	99%	KX262887.1
Select seq gb|KX197192.1|	Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome	18357	18357	100%	0.0	99%	KX197192.1
Select seq gb|KU926310.1|	Zika virus isolate Rio-S1, complete genome	18357	18357	100%	0.0	99%	KU926310.1
Select seq gb|KU926309.1|	Zika virus isolate Rio-U1, complete genome	18357	18357	100%	0.0	99%	KU926309.1
Select seq gb|KU940228.1|	Zika virus isolate Bahia07, partial genome	18354	18354	100%	0.0	99%	KU940228.1
Select seq gb|KX694534.1|	Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome	18348	18348	100%	0.0	99%	KX694534.1
Select seq gb|KX198135.1|	Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome	18348	18348	100%	0.0	99%	KX198135.1
Select seq gb|KU501217.1|	Zika virus strain 8375 polyprotein gene, complete cds	18348	18348	100%	0.0	99%	KU501217.1
Select seq gb|KU365780.1|	Zika virus strain BeH815744 polyprotein gene, complete cds	18348	18348	100%	0.0	99%	KU365780.1
Select seq gb|KU647676.1|	Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds	18345	18345	100%	0.0	99%	KU647676.1
Select seq gb|KU501216.1|	Zika virus strain 103344 polyprotein gene, complete cds	18345	18345	100%	0.0	99%	KU501216.1
Select seq gb|KU365777.1|	Zika virus strain BeH818995 polyprotein gene, complete cds	18345	18345	100%	0.0	99%	KU365777.1
Select seq gb|KX447517.1|	Zika virus isolate 1_0038_PF polyprotein gene, complete cds	18339	18339	100%	0.0	99%	KX447517.1
Select seq gb|KU758877.1|	Zika virus isolate 17271 polyprotein gene, complete cds	18339	18339	100%	0.0	99%	KU758877.1
Select seq gb|KX247646.1|	Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome	18339	18339	100%	0.0	99%	KX247646.1
Select seq gb|KX156776.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome	18339	18339	100%	0.0	99%	KX156776.1
Select seq gb|KX520666.1|	Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds	18336	18336	100%	0.0	99%	KX520666.1
Select seq gb|KX156774.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome	18336	18336	100%	0.0	99%	KX156774.1
Select seq gb|KU497555.1|	Zika virus isolate Brazil-ZKV2015, complete genome	18336	18336	99%	0.0	99%	KU497555.1
Select seq gb|KU820897.5|	Zika virus isolate FLR polyprotein gene, complete cds	18330	18330	100%	0.0	99%	KU820897.5
Select seq gb|KX247632.1|	Zika virus isolate MEX_I_7 polyprotein gene, complete cds	18330	18330	100%	0.0	99%	KX247632.1
Select seq gb|KX156775.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome	18330	18330	100%	0.0	99%	KX156775.1
Select seq gb|KX087102.1|	Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome	18330	18330	100%	0.0	99%	KX087102.1
Select seq gb|KU365778.1|	Zika virus strain BeH819015 polyprotein gene, complete cds	18330	18330	100%	0.0	99%	KU365778.1
Select seq gb|KU312312.1|	Zika virus isolate Z1106033 polyprotein gene, complete cds	18330	18330	100%	0.0	99%	KU312312.1
Select seq gb|KU922960.1|	Zika virus isolate MEX/InDRE/Sm/2016, complete genome	18327	18327	100%	0.0	99%	KU922960.1
Select seq gb|KX856011.1|	Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome	18321	18321	100%	0.0	99%	KX856011.1
Select seq gb|KX806557.1|	Zika virus isolate TS17-2016, complete genome	18321	18321	100%	0.0	99%	KX806557.1
Select seq gb|KX548902.1|	Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds	18321	18321	100%	0.0	99%	KX548902.1
Select seq gb|KX446951.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome	18321	18321	100%	0.0	99%	KX446951.1
Select seq gb|KU937936.1|	Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds	18321	18321	100%	0.0	99%	KU937936.1
Select seq gb|KU922923.1|	Zika virus isolate MEX/InDRE/Lm/2016, complete genome	18321	18321	100%	0.0	99%	KU922923.1
Select seq gb|KU501215.1|	Zika virus strain PRVABC59, complete genome	18321	18321	100%	0.0	99%	KU501215.1
Select seq gb|KX601168.1|	Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome	18318	18318	100%	0.0	99%	KX601168.1
Select seq gb|KX446950.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome	18318	18318	100%	0.0	99%	KX446950.1
Select seq gb|KX087101.2|	Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome	18318	18318	100%	0.0	99%	KX087101.2
Select seq gb|KU870645.1|	Zika virus isolate FB-GWUH-2016, complete genome	18318	18318	100%	0.0	99%	KU870645.1
Select seq gb|KX893855.1|	Zika virus strain Zika virus/Homo sapiens/VEN/UF-2/2016, complete genome	18316	18316	100%	0.0	99%	KX893855.1
Select seq gb|KX702400.1|	Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome	18312	18312	100%	0.0	99%	KX702400.1
Select seq gb|KX377337.1|	Zika virus strain PRVABC-59, complete genome	18312	18312	100%	0.0	99%	KX377337.1
Select seq gb|KX766029.1|	Zika virus isolate R116265, complete genome	18303	18303	100%	0.0	99%	KX766029.1
Select seq gb|KU820898.1|	Zika virus isolate GZ01 polyprotein gene, complete cds	18303	18303	100%	0.0	99%	KU820898.1
Select seq gb|KX056898.1|	Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds	18300	18300	100%	0.0	99%	KX056898.1
Select seq gb|KU955590.1|	Zika virus isolate Z16019 polyprotein gene, complete cds	18300	18300	100%	0.0	99%	KU955590.1
Select seq gb|KX766028.1|	Zika virus isolate R114916, complete genome	18296	18296	100%	0.0	99%	KX766028.1
Select seq gb|KU740184.2|	Zika virus isolate GD01 polyprotein gene, complete cds	18294	18294	100%	0.0	99%	KU740184.2
Select seq gb|KU761564.1|	Zika virus isolate GDZ16001 polyprotein gene, complete cds	18294	18294	100%	0.0	99%	KU761564.1
Select seq gb|KX117076.1|	Zika virus isolate Zhejiang04, complete genome	18291	18291	100%	0.0	99%	KX117076.1
Select seq gb|KX185891.1|	Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds	18282	18282	100%	0.0	99%	KX185891.1
Select seq gb|KU963796.1|	Zika virus isolate SZ-WIV01 polyprotein gene, complete cds	18282	18282	100%	0.0	99%	KU963796.1
Select seq gb|KX253996.1|	Zika virus isolate ZKC2/2016, complete genome	18276	18276	100%	0.0	99%	KX253996.1
Select seq gb|KU955589.1|	Zika virus isolate Z16006 polyprotein gene, complete cds	18276	18276	100%	0.0	99%	KU955589.1
Select seq gb|KU820899.2|	Zika virus isolate ZJ03, complete genome	18276	18276	100%	0.0	99%	KU820899.2
Select seq gb|KX266255.1|	Zika virus isolate ZIKV_SMGC-1, complete genome	18273	18273	100%	0.0	99%	KX266255.1
Select seq gb|KU866423.2|	Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds	18273	18273	100%	0.0	99%	KU866423.2
Select seq gb|KU940224.1|	Zika virus isolate Bahia09, partial genome	18258	18258	99%	0.0	99%	KU940224.1
Select seq gb|KU744693.1|	Zika virus isolate VE_Ganxian, complete genome	18137	18137	100%	0.0	99%	KU744693.1
Select seq gb|KX827309.1|	Zika virus isolate ZKA-16-291 polyprotein gene, complete cds	18114	18114	100%	0.0	99%	KX827309.1
Select seq gb|KX813683.1|	Zika virus isolate ZKA-16-097 polyprotein gene, complete cds	18101	18101	100%	0.0	99%	KX813683.1
Select seq gb|KU681081.3|	Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome	18047	18047	100%	0.0	99%	KU681081.3
Select seq gb|KX694532.1|	Zika virus strain ZIKV/Homo sapiens/THA/PLCal_ZV/2013, complete genome	17933	17933	100%	0.0	99%	KX694532.1
Select seq gb|JN860885.1|	Zika virus isolate FSS13025 polyprotein gene, partial cds	17748	17748	99%	0.0	98%	JN860885.1

[niman]

DOM_2016_BB-0127_SER

matches

Sequences producing significant alignments:

Select:AllNone Selected:0

AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments

Sequences producing significant alignments:

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
Select seq gb|KX198135.1|	Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome	18474	18474	100%	0.0	99%	KX198135.1
Select seq gb|KX156776.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome	18465	18465	100%	0.0	99%	KX156776.1
Select seq gb|KX156774.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome	18462	18462	100%	0.0	99%	KX156774.1
Select seq gb|KU647676.1|	Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds	18462	18462	100%	0.0	99%	KU647676.1
Select seq gb|KU820897.5|	Zika virus isolate FLR polyprotein gene, complete cds	18456	18456	100%	0.0	99%	KU820897.5
Select seq gb|KX247646.1|	Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome	18456	18456	100%	0.0	99%	KX247646.1
Select seq gb|KX156775.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome	18456	18456	100%	0.0	99%	KX156775.1
Select seq gb|KX087102.1|	Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome	18456	18456	100%	0.0	99%	KX087102.1
Select seq gb|KU922960.1|	Zika virus isolate MEX/InDRE/Sm/2016, complete genome	18444	18444	100%	0.0	99%	KU922960.1
Select seq gb|KU922923.1|	Zika virus isolate MEX/InDRE/Lm/2016, complete genome	18438	18438	100%	0.0	99%	KU922923.1
Select seq gb|KX893855.1|	Zika virus strain Zika virus/Homo sapiens/VEN/UF-2/2016, complete genome	18433	18433	100%	0.0	99%	KX893855.1
Select seq gb|KX702400.1|	Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome	18429	18429	100%	0.0	99%	KX702400.1
Select seq gb|KX548902.1|	Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds	18429	18429	100%	0.0	99%	KX548902.1
Select seq gb|KX447510.1|	Zika virus isolate 1_0049_PF polyprotein gene, complete cds	18411	18411	100%	0.0	99%	KX447510.1
Select seq gb|KU991811.1|	Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds	18408	18408	100%	0.0	99%	KU991811.1
Select seq gb|KX447512.1|	Zika virus isolate 1_0181_PF polyprotein gene, complete cds	18402	18402	100%	0.0	99%	KX447512.1
Select seq gb|KX369547.1|	Zika virus strain PF13/251013-18, complete genome	18402	18402	100%	0.0	99%	KX369547.1
Select seq gb|KU509998.3|	Zika virus strain Haiti/1225/2014, complete genome	18402	18402	100%	0.0	99%	KU509998.3
Select seq gb|KJ776791.2|	Zika virus strain H/PF/2013, complete genome	18399	18399	100%	0.0	99%	KJ776791.2
Select seq gb|KX447509.1|	Zika virus isolate 1_0087_PF polyprotein gene, complete cds	18399	18399	100%	0.0	99%	KX447509.1
Select seq gb|KX447513.1|	Zika virus isolate 1_0134_PF polyprotein gene, complete cds	18393	18393	100%	0.0	99%	KX447513.1
Select seq gb|KX197205.1|	Zika virus isolate 9, complete genome	18390	18390	100%	0.0	99%	KX197205.1
Select seq gb|KX447515.1|	Zika virus isolate 1_0030_PF polyprotein gene, complete cds	18390	18390	100%	0.0	99%	KX447515.1
Select seq gb|KX447511.1|	Zika virus isolate 1_0015_PF polyprotein gene, complete cds	18390	18390	100%	0.0	99%	KX447511.1
Select seq gb|KX280026.1|	Zika virus isolate Paraiba_01, complete genome	18390	18390	100%	0.0	99%	KX280026.1
Select seq gb|KU321639.1|	Zika virus strain ZikaSPH2015, complete genome	18390	18390	100%	0.0	99%	KU321639.1
Select seq gb|KX447514.1|	Zika virus isolate 1_0035_PF polyprotein gene, complete cds	18384	18384	100%	0.0	99%	KX447514.1
Select seq gb|KX051563.1|	Zika virus isolate Haiti/1/2016, complete genome	18384	18384	100%	0.0	99%	KX051563.1
Select seq gb|KX447516.1|	Zika virus isolate 1_0111_PF polyprotein gene, complete cds	18381	18381	100%	0.0	99%	KX447516.1
Select seq gb|KU729218.1|	Zika virus isolate BeH828305 polyprotein gene, complete cds	18381	18381	100%	0.0	99%	KU729218.1
Select seq gb|KU707826.1|	Zika virus isolate SSABR1, complete genome	18381	18381	100%	0.0	99%	KU707826.1
Select seq gb|KU365779.1|	Zika virus strain BeH819966 polyprotein gene, complete cds	18381	18381	100%	0.0	99%	KU365779.1
Select seq gb|KX262887.1|	Zika virus isolate 103451, complete genome	18375	18375	100%	0.0	99%	KX262887.1
Select seq gb|KX197192.1|	Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome	18375	18375	100%	0.0	99%	KX197192.1
Select seq gb|KX811222.1|	Zika virus isolate Brazil_2015_MG, complete genome	18372	18372	100%	0.0	99%	KX811222.1
Select seq gb|KU497555.1|	Zika virus isolate Brazil-ZKV2015, complete genome	18372	18372	99%	0.0	99%	KU497555.1
Select seq gb|KX879604.1|	Zika virus isolate SN089, complete genome	18366	18366	100%	0.0	99%	KX879604.1
Select seq gb|KX694534.1|	Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome	18366	18366	100%	0.0	99%	KX694534.1
Select seq gb|KU758877.1|	Zika virus isolate 17271 polyprotein gene, complete cds	18366	18366	100%	0.0	99%	KU758877.1
Select seq gb|KU926309.1|	Zika virus isolate Rio-U1, complete genome	18366	18366	100%	0.0	99%	KU926309.1
Select seq gb|KU365780.1|	Zika virus strain BeH815744 polyprotein gene, complete cds	18366	18366	100%	0.0	99%	KU365780.1
Select seq gb|KU940228.1|	Zika virus isolate Bahia07, partial genome	18363	18363	100%	0.0	99%	KU940228.1
Select seq gb|KU365777.1|	Zika virus strain BeH818995 polyprotein gene, complete cds	18363	18363	100%	0.0	99%	KU365777.1
Select seq gb|KX879603.1|	Zika virus isolate SN062, complete genome	18357	18357	100%	0.0	99%	KX879603.1
Select seq gb|KU501217.1|	Zika virus strain 8375 polyprotein gene, complete cds	18357	18357	100%	0.0	99%	KU501217.1
Select seq gb|KU365778.1|	Zika virus strain BeH819015 polyprotein gene, complete cds	18357	18357	100%	0.0	99%	KU365778.1
Select seq gb|KU312312.1|	Zika virus isolate Z1106033 polyprotein gene, complete cds	18357	18357	100%	0.0	99%	KU312312.1
Select seq gb|KU729217.2|	Zika virus isolate BeH823339 polyprotein gene, complete cds	18354	18354	100%	0.0	99%	KU729217.2
Select seq gb|KU527068.1|	Zika virus strain Natal RGN, complete genome	18354	18354	100%	0.0	99%	KU527068.1
Select seq gb|KU501216.1|	Zika virus strain 103344 polyprotein gene, complete cds	18354	18354	100%	0.0	99%	KU501216.1
Select seq gb|KX447517.1|	Zika virus isolate 1_0038_PF polyprotein gene, complete cds	18348	18348	100%	0.0	99%	KX447517.1
Select seq gb|KX247632.1|	Zika virus isolate MEX_I_7 polyprotein gene, complete cds	18348	18348	100%	0.0	99%	KX247632.1
Select seq gb|KU937936.1|	Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds	18348	18348	100%	0.0	99%	KU937936.1
Select seq gb|KU501215.1|	Zika virus strain PRVABC59, complete genome	18348	18348	100%	0.0	99%	KU501215.1
Select seq gb|KX601168.1|	Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome	18345	18345	100%	0.0	99%	KX601168.1
Select seq gb|KX520666.1|	Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds	18345	18345	100%	0.0	99%	KX520666.1
Select seq gb|KX087101.2|	Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome	18345	18345	100%	0.0	99%	KX087101.2
Select seq gb|KX856011.1|	Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome	18339	18339	100%	0.0	99%	KX856011.1
Select seq gb|KX806557.1|	Zika virus isolate TS17-2016, complete genome	18339	18339	100%	0.0	99%	KX806557.1
Select seq gb|KX446951.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome	18339	18339	100%	0.0	99%	KX446951.1
Select seq gb|KX377337.1|	Zika virus strain PRVABC-59, complete genome	18339	18339	100%	0.0	99%	KX377337.1
Select seq gb|KU926310.1|	Zika virus isolate Rio-S1, complete genome	18339	18339	100%	0.0	99%	KU926310.1
Select seq gb|KU820898.1|	Zika virus isolate GZ01 polyprotein gene, complete cds	18339	18339	100%	0.0	99%	KU820898.1
Select seq gb|KX446950.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome	18336	18336	100%	0.0	99%	KX446950.1
Select seq gb|KU870645.1|	Zika virus isolate FB-GWUH-2016, complete genome	18336	18336	100%	0.0	99%	KU870645.1
Select seq gb|KU853013.1|	Zika virus isolate Dominican Republic/2016/PD2, complete genome	18330	18330	100%	0.0	99%	KU853013.1
Select seq gb|KU853012.1|	Zika virus isolate Dominican Republic/2016/PD1, complete genome	18330	18330	100%	0.0	99%	KU853012.1
Select seq gb|KX056898.1|	Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds	18327	18327	100%	0.0	99%	KX056898.1
Select seq gb|KU955590.1|	Zika virus isolate Z16019 polyprotein gene, complete cds	18327	18327	100%	0.0	99%	KU955590.1
Select seq gb|KX766028.1|	Zika virus isolate R114916, complete genome	18323	18323	100%	0.0	99%	KX766028.1
Select seq gb|KU740184.2|	Zika virus isolate GD01 polyprotein gene, complete cds	18321	18321	100%	0.0	99%	KU740184.2
Select seq gb|KU761564.1|	Zika virus isolate GDZ16001 polyprotein gene, complete cds	18321	18321	100%	0.0	99%	KU761564.1
Select seq gb|KX842449.2|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds	18318	18318	100%	0.0	99%	KX842449.2
Select seq gb|KX766029.1|	Zika virus isolate R116265, complete genome	18312	18312	100%	0.0	99%	KX766029.1
Select seq gb|KX922707.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds	18309	18309	100%	0.0	99%	KX922707.1
Select seq gb|KX673530.1|	Zika virus isolate PHE_semen_Guadeloupe, complete genome	18309	18309	100%	0.0	99%	KX673530.1
Select seq gb|KX117076.1|	Zika virus isolate Zhejiang04, complete genome	18309	18309	100%	0.0	99%	KX117076.1
Select seq gb|KX922706.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds	18305	18305	100%	0.0	99%	KX922706.1
Select seq gb|KX922703.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds	18303	18303	100%	0.0	99%	KX922703.1
Select seq gb|KX838906.2|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds	18303	18303	100%	0.0	99%	KX838906.2
Select seq gb|KX838905.2|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds	18303	18303	100%	0.0	99%	KX838905.2
Select seq gb|KX832731.1|	Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds	18303	18303	100%	0.0	99%	KX832731.1
Select seq gb|KX922704.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds	18300	18300	100%	0.0	99%	KX922704.1
Select seq gb|KX185891.1|	Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds	18300	18300	100%	0.0	99%	KX185891.1
Select seq gb|KU963796.1|	Zika virus isolate SZ-WIV01 polyprotein gene, complete cds	18300	18300	100%	0.0	99%	KU963796.1
Select seq gb|KX838904.2|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds	18294	18294	100%	0.0	99%	KX838904.2
Select seq gb|KX253996.1|	Zika virus isolate ZKC2/2016, complete genome	18294	18294	100%	0.0	99%	KX253996.1
Select seq gb|KU955589.1|	Zika virus isolate Z16006 polyprotein gene, complete cds	18294	18294	100%	0.0	99%	KU955589.1
Select seq gb|KU820899.2|	Zika virus isolate ZJ03, complete genome	18294	18294	100%	0.0	99%	KU820899.2
Select seq gb|KX922705.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds	18292	18292	100%	0.0	99%	KX922705.1
Select seq gb|KX266255.1|	Zika virus isolate ZIKV_SMGC-1, complete genome	18291	18291	100%	0.0	99%	KX266255.1
Select seq gb|KU866423.2|	Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds	18291	18291	100%	0.0	99%	KU866423.2
Select seq gb|KX922708.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds	18285	18285	100%	0.0	99%	KX922708.1
Select seq gb|KU940224.1|	Zika virus isolate Bahia09, partial genome	18273	18273	99%	0.0	99%	KU940224.1
Select seq gb|KU744693.1|	Zika virus isolate VE_Ganxian, complete genome	18155	18155	100%	0.0	99%	KU744693.1
Select seq gb|KX827309.1|	Zika virus isolate ZKA-16-291 polyprotein gene, complete cds	18141	18141	100%	0.0	99%	KX827309.1
Select seq gb|KX813683.1|	Zika virus isolate ZKA-16-097 polyprotein gene, complete cds	18128	18128	100%	0.0	99%	KX813683.1
Select seq gb|KU681081.3|	Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome	18065	18065	100%	0.0	99%	KU681081.3
Select seq gb|KX694532.1|	Zika virus strain ZIKV/Homo sapiens/THA/PLCal_ZV/2013, complete genome	17957	17957	100%	0.0	99%	KX694532.1
Select seq gb|JN860885.1|	Zika virus isolate FSS13025 polyprotein gene, partial cds	17757	17757	99%	0.0	98%	JN860885.1

Edited October 12, 2016 by niman

[niman]

DOM_2016_BB-0208_SER

matches

Sequences producing significant alignments:

Select:AllNone Selected:0

AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments

Sequences producing significant alignments:

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
Select seq gb|KU853013.1|	Zika virus isolate Dominican Republic/2016/PD2, complete genome	18465	18465	100%	0.0	99%	KU853013.1
Select seq gb|KU853012.1|	Zika virus isolate Dominican Republic/2016/PD1, complete genome	18465	18465	100%	0.0	99%	KU853012.1
Select seq gb|KX842449.2|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds	18462	18462	100%	0.0	99%	KX842449.2
Select seq gb|KX673530.1|	Zika virus isolate PHE_semen_Guadeloupe, complete genome	18453	18453	100%	0.0	99%	KX673530.1
Select seq gb|KX922703.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds	18447	18447	100%	0.0	99%	KX922703.1
Select seq gb|KX838905.2|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds	18447	18447	100%	0.0	99%	KX838905.2
Select seq gb|KX832731.1|	Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds	18447	18447	100%	0.0	99%	KX832731.1
Select seq gb|KX922706.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds	18446	18446	100%	0.0	99%	KX922706.1
Select seq gb|KX922707.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds	18444	18444	100%	0.0	99%	KX922707.1
Select seq gb|KX922704.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds	18444	18444	100%	0.0	99%	KX922704.1
Select seq gb|KX838906.2|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds	18438	18438	100%	0.0	99%	KX838906.2
Select seq gb|KX838904.2|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds	18438	18438	100%	0.0	99%	KX838904.2
Select seq gb|KX922705.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds	18428	18428	100%	0.0	99%	KX922705.1
Select seq gb|KX922708.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds	18420	18420	100%	0.0	99%	KX922708.1
Select seq gb|KX447510.1|	Zika virus isolate 1_0049_PF polyprotein gene, complete cds	18375	18375	100%	0.0	99%	KX447510.1
Select seq gb|KX280026.1|	Zika virus isolate Paraiba_01, complete genome	18372	18372	100%	0.0	99%	KX280026.1
Select seq gb|KX447512.1|	Zika virus isolate 1_0181_PF polyprotein gene, complete cds	18366	18366	100%	0.0	99%	KX447512.1
Select seq gb|KX369547.1|	Zika virus strain PF13/251013-18, complete genome	18366	18366	100%	0.0	99%	KX369547.1
Select seq gb|KU509998.3|	Zika virus strain Haiti/1225/2014, complete genome	18366	18366	100%	0.0	99%	KU509998.3
Select seq gb|KJ776791.2|	Zika virus strain H/PF/2013, complete genome	18363	18363	100%	0.0	99%	KJ776791.2
Select seq gb|KX447509.1|	Zika virus isolate 1_0087_PF polyprotein gene, complete cds	18363	18363	100%	0.0	99%	KX447509.1
Select seq gb|KU991811.1|	Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds	18363	18363	100%	0.0	99%	KU991811.1
Select seq gb|KU729217.2|	Zika virus isolate BeH823339 polyprotein gene, complete cds	18363	18363	100%	0.0	99%	KU729217.2
Select seq gb|KX447513.1|	Zika virus isolate 1_0134_PF polyprotein gene, complete cds	18357	18357	100%	0.0	99%	KX447513.1
Select seq gb|KX051563.1|	Zika virus isolate Haiti/1/2016, complete genome	18357	18357	100%	0.0	99%	KX051563.1
Select seq gb|KX811222.1|	Zika virus isolate Brazil_2015_MG, complete genome	18354	18354	100%	0.0	99%	KX811222.1
Select seq gb|KX197205.1|	Zika virus isolate 9, complete genome	18354	18354	100%	0.0	99%	KX197205.1
Select seq gb|KX447515.1|	Zika virus isolate 1_0030_PF polyprotein gene, complete cds	18354	18354	100%	0.0	99%	KX447515.1
Select seq gb|KX447511.1|	Zika virus isolate 1_0015_PF polyprotein gene, complete cds	18354	18354	100%	0.0	99%	KX447511.1
Select seq gb|KU527068.1|	Zika virus strain Natal RGN, complete genome	18354	18354	100%	0.0	99%	KU527068.1
Select seq gb|KU321639.1|	Zika virus strain ZikaSPH2015, complete genome	18354	18354	100%	0.0	99%	KU321639.1
Select seq gb|KX879604.1|	Zika virus isolate SN089, complete genome	18348	18348	100%	0.0	99%	KX879604.1
Select seq gb|KX447514.1|	Zika virus isolate 1_0035_PF polyprotein gene, complete cds	18348	18348	100%	0.0	99%	KX447514.1
Select seq gb|KX447516.1|	Zika virus isolate 1_0111_PF polyprotein gene, complete cds	18345	18345	100%	0.0	99%	KX447516.1
Select seq gb|KU729218.1|	Zika virus isolate BeH828305 polyprotein gene, complete cds	18345	18345	100%	0.0	99%	KU729218.1
Select seq gb|KU707826.1|	Zika virus isolate SSABR1, complete genome	18345	18345	100%	0.0	99%	KU707826.1
Select seq gb|KU365779.1|	Zika virus strain BeH819966 polyprotein gene, complete cds	18345	18345	100%	0.0	99%	KU365779.1
Select seq gb|KX879603.1|	Zika virus isolate SN062, complete genome	18339	18339	100%	0.0	99%	KX879603.1
Select seq gb|KX262887.1|	Zika virus isolate 103451, complete genome	18339	18339	100%	0.0	99%	KX262887.1
Select seq gb|KX197192.1|	Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome	18339	18339	100%	0.0	99%	KX197192.1
Select seq gb|KU926310.1|	Zika virus isolate Rio-S1, complete genome	18339	18339	100%	0.0	99%	KU926310.1
Select seq gb|KU926309.1|	Zika virus isolate Rio-U1, complete genome	18339	18339	100%	0.0	99%	KU926309.1
Select seq gb|KU940228.1|	Zika virus isolate Bahia07, partial genome	18336	18336	100%	0.0	99%	KU940228.1
Select seq gb|KX694534.1|	Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome	18330	18330	100%	0.0	99%	KX694534.1
Select seq gb|KX198135.1|	Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome	18330	18330	100%	0.0	99%	KX198135.1
Select seq gb|KU501217.1|	Zika virus strain 8375 polyprotein gene, complete cds	18330	18330	100%	0.0	99%	KU501217.1
Select seq gb|KU365780.1|	Zika virus strain BeH815744 polyprotein gene, complete cds	18330	18330	100%	0.0	99%	KU365780.1
Select seq gb|KU647676.1|	Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds	18327	18327	100%	0.0	99%	KU647676.1
Select seq gb|KU501216.1|	Zika virus strain 103344 polyprotein gene, complete cds	18327	18327	100%	0.0	99%	KU501216.1
Select seq gb|KU365777.1|	Zika virus strain BeH818995 polyprotein gene, complete cds	18327	18327	100%	0.0	99%	KU365777.1
Select seq gb|KX447517.1|	Zika virus isolate 1_0038_PF polyprotein gene, complete cds	18321	18321	100%	0.0	99%	KX447517.1
Select seq gb|KU758877.1|	Zika virus isolate 17271 polyprotein gene, complete cds	18321	18321	100%	0.0	99%	KU758877.1
Select seq gb|KX247646.1|	Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome	18321	18321	100%	0.0	99%	KX247646.1
Select seq gb|KX156776.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome	18321	18321	100%	0.0	99%	KX156776.1
Select seq gb|KX520666.1|	Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds	18318	18318	100%	0.0	99%	KX520666.1
Select seq gb|KX156774.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome	18318	18318	100%	0.0	99%	KX156774.1
Select seq gb|KU497555.1|	Zika virus isolate Brazil-ZKV2015, complete genome	18318	18318	99%	0.0	99%	KU497555.1
Select seq gb|KU820897.5|	Zika virus isolate FLR polyprotein gene, complete cds	18312	18312	100%	0.0	99%	KU820897.5
Select seq gb|KX247632.1|	Zika virus isolate MEX_I_7 polyprotein gene, complete cds	18312	18312	100%	0.0	99%	KX247632.1
Select seq gb|KX156775.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome	18312	18312	100%	0.0	99%	KX156775.1
Select seq gb|KX087102.1|	Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome	18312	18312	100%	0.0	99%	KX087102.1
Select seq gb|KU365778.1|	Zika virus strain BeH819015 polyprotein gene, complete cds	18312	18312	100%	0.0	99%	KU365778.1
Select seq gb|KU312312.1|	Zika virus isolate Z1106033 polyprotein gene, complete cds	18312	18312	100%	0.0	99%	KU312312.1
Select seq gb|KU922960.1|	Zika virus isolate MEX/InDRE/Sm/2016, complete genome	18309	18309	100%	0.0	99%	KU922960.1
Select seq gb|KX856011.1|	Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome	18303	18303	100%	0.0	99%	KX856011.1
Select seq gb|KX806557.1|	Zika virus isolate TS17-2016, complete genome	18303	18303	100%	0.0	99%	KX806557.1
Select seq gb|KX548902.1|	Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds	18303	18303	100%	0.0	99%	KX548902.1
Select seq gb|KX446951.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome	18303	18303	100%	0.0	99%	KX446951.1
Select seq gb|KU937936.1|	Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds	18303	18303	100%	0.0	99%	KU937936.1
Select seq gb|KU922923.1|	Zika virus isolate MEX/InDRE/Lm/2016, complete genome	18303	18303	100%	0.0	99%	KU922923.1
Select seq gb|KU501215.1|	Zika virus strain PRVABC59, complete genome	18303	18303	100%	0.0	99%	KU501215.1
Select seq gb|KX601168.1|	Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome	18300	18300	100%	0.0	99%	KX601168.1
Select seq gb|KX446950.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome	18300	18300	100%	0.0	99%	KX446950.1
Select seq gb|KX087101.2|	Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome	18300	18300	100%	0.0	99%	KX087101.2
Select seq gb|KU870645.1|	Zika virus isolate FB-GWUH-2016, complete genome	18300	18300	100%	0.0	99%	KU870645.1
Select seq gb|KX893855.1|	Zika virus strain Zika virus/Homo sapiens/VEN/UF-2/2016, complete genome	18298	18298	100%	0.0	99%	KX893855.1
Select seq gb|KX702400.1|	Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome	18294	18294	100%	0.0	99%	KX702400.1
Select seq gb|KX377337.1|	Zika virus strain PRVABC-59, complete genome	18294	18294	100%	0.0	99%	KX377337.1
Select seq gb|KX766029.1|	Zika virus isolate R116265, complete genome	18285	18285	100%	0.0	99%	KX766029.1
Select seq gb|KU820898.1|	Zika virus isolate GZ01 polyprotein gene, complete cds	18285	18285	100%	0.0	99%	KU820898.1
Select seq gb|KX056898.1|	Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds	18282	18282	100%	0.0	99%	KX056898.1
Select seq gb|KU955590.1|	Zika virus isolate Z16019 polyprotein gene, complete cds	18282	18282	100%	0.0	99%	KU955590.1
Select seq gb|KX766028.1|	Zika virus isolate R114916, complete genome	18278	18278	100%	0.0	99%	KX766028.1
Select seq gb|KU740184.2|	Zika virus isolate GD01 polyprotein gene, complete cds	18276	18276	100%	0.0	99%	KU740184.2
Select seq gb|KU761564.1|	Zika virus isolate GDZ16001 polyprotein gene, complete cds	18276	18276	100%	0.0	99%	KU761564.1
Select seq gb|KX117076.1|	Zika virus isolate Zhejiang04, complete genome	18273	18273	100%	0.0	99%	KX117076.1
Select seq gb|KX185891.1|	Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds	18264	18264	100%	0.0	99%	KX185891.1
Select seq gb|KU963796.1|	Zika virus isolate SZ-WIV01 polyprotein gene, complete cds	18264	18264	100%	0.0	99%	KU963796.1
Select seq gb|KX253996.1|	Zika virus isolate ZKC2/2016, complete genome	18258	18258	100%	0.0	99%	KX253996.1
Select seq gb|KU955589.1|	Zika virus isolate Z16006 polyprotein gene, complete cds	18258	18258	100%	0.0	99%	KU955589.1
Select seq gb|KU820899.2|	Zika virus isolate ZJ03, complete genome	18258	18258	100%	0.0	99%	KU820899.2
Select seq gb|KX266255.1|	Zika virus isolate ZIKV_SMGC-1, complete genome	18254	18254	100%	0.0	99%	KX266255.1
Select seq gb|KU866423.2|	Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds	18254	18254	100%	0.0	99%	KU866423.2
Select seq gb|KU940224.1|	Zika virus isolate Bahia09, partial genome	18240	18240	99%	0.0	99%	KU940224.1
Select seq gb|KU744693.1|	Zika virus isolate VE_Ganxian, complete genome	18119	18119	100%	0.0	99%	KU744693.1
Select seq gb|KX827309.1|	Zika virus isolate ZKA-16-291 polyprotein gene, complete cds	18096	18096	100%	0.0	99%	KX827309.1
Select seq gb|KX813683.1|	Zika virus isolate ZKA-16-097 polyprotein gene, complete cds	18083	18083	100%	0.0	99%	KX813683.1
Select seq gb|KU681081.3|	Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome	18029	18029	100%	0.0	99%	KU681081.3
Select seq gb|KX694532.1|	Zika virus strain ZIKV/Homo sapiens/THA/PLCal_ZV/2013, complete genome	17915	17915	100%	0.0	99%	KX694532.1
Select seq gb|KU955593.1|	Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome	17732	17732	100%	0.0	98%	KU955593.1
Select seq gb|JN860885.1|	Zika virus isolate FSS13025 polyprotein gene, partial cds	17730	17730	99%	0.0	98%	JN860885.1
Select seq gb|KF993678.1|	Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds	17685	17685	98%	0.0	99%	KF993678.1
Select seq gb|EU545988.1|	Zika virus polyprotein gene, complete cds	17576	17576	100%	0.0	98%	EU545988.1
Select seq gb|KU681082.3|	Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome	17429	17429	100%	0.0	98%	KU681082.3
Select seq gb|KX601167.1|	Zika virus strain ZIKV/Aedes sp./MYS/P6-740/1966, complete genome	16401	16401	100%	0.0	95%	KX601167.1
Select seq gb|HQ234499.1|	Zika virus isolate P6-740 polyprotein gene, partial cds	16393	16393	99%	0.0	95%	HQ234499.1
Select seq gb|KX694533.1|	Zika virus strain ZIKV/Aedes aegypti/MYS/P6-740/1966, complete genome	16392	16392	100%	0.0	95%	KX694533.1
Select seq gb|KX377336.1|	Zika virus strain P6-740, complete genome	16388	16388	100%	0.0	95%	KX377336.1
Select seq gb|KX447518.1|	Zika virus isolate 1_0117_PF polyprotein gene, partial cds	16220	16220	88%	0.0	99%	KX447518.1
Select seq gb|KX830960.1|	Zika virus culture ATCC:VR-84 isolate MR776, complete genome	13322	13322	100%	0.0	89%	KX830960.1
Select seq gb|KU720415.1|	Zika virus strain MR 766 polyprotein gene, complete cds	13322	13322	100%	0.0	89%	KU720415.1
Select seq gb|HQ234498.1|	Zika virus isolate MR_766 polyprotein gene, partial cds	13317	13317	99%	0.0	89%	HQ234498.1
Select seq gb|DQ859059.1|	Zika virus strain MR 766 polyprotein gene, complete cds	13315	13315	100%	0.0	89%	DQ859059.1
Select seq gb|KX377335.1|	Zika virus strain MR-766, complete genome	13308	13308	100%	0.0	89%	KX377335.1
Select seq gb|KF383115.1|	Zika virus strain ArB1362 polyprotein gene, complete cds	13306	13306	100%	0.0	89%	KF383115.1
Select seq gb|KF383119.1|	Zika virus strain ArD158084 polyprotein gene, complete cds	13304	13304	100%	0.0	89%	KF383119.1
Select seq dbj|LC002520.1|	Zika virus genomic RNA, complete genome, strain: MR766-NIID	13299	13299	100%	0.0	89%	LC002520.1
Select seq gb|KF268949.1|	Zika virus isolate ARB15076 polyprotein gene, complete cds	13293	13293	100%	0.0	89%	KF268949.1
Select seq gb|KF268948.1|	Zika virus isolate ARB13565 polyprotein gene, complete cds	13293	13293	100%	0.0	89%	KF268948.1
Select seq gb|KF268950.1|	Zika virus isolate ARB7701 polyprotein gene, complete cds	13286	13286	100%	0.0	89%	KF268950.1
Select seq gb|KX601169.1|	Zika virus strain ZIKV/Macaca mulatta/UGA/MR-766/1947, complete genome	13283	13283	100%	0.0	89%	KX601169.1
Select seq gb|KU963573.1|	Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds	13283	13283	100%	0.0	89%	KU963573.1
Select seq gb|KU955594.1|	Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome	13283	13283	100%	0.0	89%	KU955594.1
Select seq gb|KU955595.1|	Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome	13281	13281	100%	0.0	89%	KU955595.1
Select seq gb|KU955592.1|	Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome	13272	13272	100%	0.0	89%	KU955592.1
Select seq gb|KX198134.1|	Zika virus strain ZIKV/Aedes africanus/SEN/DAK-AR-41524_A1C1-V2/1984, complete genome	13259	13742	100%	0.0	89%	KX198134.1
Select seq gb|KU955591.1|	Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome	13254	13254	100%	0.0	89%	KU955591.1
Select seq gb|KF383116.1|	Zika virus strain ArD7117 polyprotein gene, complete cds	13248	13248	100%	0.0	89%	KF383116.1
Select seq gb|AY632535.2|	Zika virus strain MR 766, complete genome	13241	13241	100%	0.0	89%	AY632535.2
Select seq gb|HQ234501.1|	Zika virus isolate ArD_41519 polyprotein gene, partial cds	13223	13223	99%	0.0	89%	HQ234501.1
Select seq gb|KX601166.1|	Zika virus strain ZIKV/Aedes africanus/SEN/DakAr41524/1984, complete genome	13198	13198	100%	0.0	88%	KX601166.1
Select seq gb|KU963574.1|	Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds	13176	13278	100%	0.0	88%	KU963574.1
Select seq gb|HQ234500.1|	Zika virus isolate IbH_30656 polyprotein gene, partial cds	13174	13174	99%	0.0	88%	HQ234500.1
Select seq gb|KF383117.1|	Zika virus strain ArD128000 polyprotein gene, complete cds	13169	13169	100%	0.0	88%	KF383117.1
Select seq gb|KF383118.1|	Zika virus strain ArD157995 polyprotein gene, complete cds	12981	13049	100%	0.0	88%	KF383118.1
Select seq gb|KF383121.1|	Zika virus strain ArD158095 polyprotein gene, partial cds	12909	12909	97%	0.0	89%	KF383121.1
Select seq gb|KX447520.1|	Zika virus isolate 1_0016_PF polyprotein gene, partial cds	11517	15828	86%	0.0	99%	KX447520.1
Select seq gb|KX576684.1|	Zika virus vector pZIKV-ICD, complete sequence	10926	18371	100%	0.0	99%	KX576684.1
Select seq gb|KF383120.1|	Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence	10846	10846	97%	0.0	84%	KF383120.1
Select seq gb|KX447519.1|	Zika virus isolate 1_0199_PF polyprotein gene, partial cds	10006	16097	87%	0.0	99%	KX447519.1
Select seq gb|KX447521.1|	Zika virus isolate 1_0080_PF polyprotein gene, partial cds	9858	14979	81%	0.0	99%	KX447521.1
Select seq gb|KX830961.1|	Synthetic construct, complete sequence	9393	13329	100%	0.0	89%	KX830961.1
Select seq gb|KU940227.1|	Zika virus isolate Bahia08, partial genome	5034	14400	87%	0.0	95%	KU940227.1
Select seq gb|KX212103.1|	Zika virus isolate BRZIKV_AB_ES polyprotein gene, partial cds	5012	5012	27%	0.0	99%	KX212103.1
Select seq gb|KU758869.1|	Zika virus isolate 05211 polyprotein gene, partial cds	4985	4985	26%	0.0	99%	KU758869.1
Select seq gb|KU758875.1|	Zika virus isolate 15042 polyprotein gene, partial cds	4978	4978	27%	0.0	99%	KU758875.1
Select seq gb|KU758871.1|	Zika virus isolate 17170 polyprotein gene, partial cds	4974	4974	27%	0.0	99%	KU758871.1
Select seq gb|KU758870.1|	Zika virus isolate 17160 polyprotein gene, partial cds	4967	4967	27%	0.0	99%	KU758870.1
Select seq gb|KU312314.1|	Zika virus isolate Z1106031 polyprotein gene, partial cds	4967	4967	27%	0.0	99%	KU312314.1
Select seq gb|KU758873.1|	Zika virus isolate 18246 polyprotein gene, partial cds	4965	4965	27%	0.0	99%	KU758873.1
Select seq gb|KU758868.1|	Zika virus isolate 27229 polyprotein gene, partial cds	4956	4956	26%	0.0	99%	KU758868.1
Select seq gb|KU758872.1|	Zika virus isolate 01170 polyprotein gene, partial cds	4953	4953	27%	0.0	99%	KU758872.1
Select seq gb|KU758874.1|	Zika virus isolate 20114 polyprotein gene, partial cds	4951	4951	26%	0.0	99%	KU758874.1
Select seq gb|KU758876.1|	Zika virus isolate 21068 polyprotein gene, partial cds	4942	4942	27%	0.0	99%	KU758876.1
Select seq gb|KU312313.1|	Zika virus isolate Z1106032 polyprotein gene, partial cds	4940	4940	27%	0.0	99%	KU312313.1
Select seq gb|KU646828.1|	Zika virus isolate Si322 polyprotein gene, partial cds	4641	4641	25%	0.0	99%	KU646828.1
Select seq gb|KU646827.1|	Zika virus isolate Si323 polyprotein gene, partial cds	4632	4632	25%	0.0	99%	KU646827.1
Select seq gb|KX101060.1|	Zika virus isolate Bahia02, partial genome	4208	13276	75%	0.0	95%	KX101060.1
Select seq gb|KU312315.1|	Zika virus isolate Z1106027 polyprotein gene, partial cds	3425	3425	18%	0.0	99%	KU312315.1
Select seq gb|KU740199.1|	Zika virus isolate VE_Ganxian2016 polyprotein gene, partial cds	3214	3214	17%	0.0	99%	KU740199.1
Select seq gb|KX101066.1|	Zika virus isolate Bahia01, partial genome	3112	13074	74%	0.0	99%	KX101066.1
Select seq gb|DQ859064.1|	Spondweni virus strain SM-6 V-1 polyprotein gene, complete cds	2874	4206	95%	0.0	71%	DQ859064.1
Select seq gb|KX216638.1|	Zika virus isolate ESS23-2015 envelope protein gene, partial cds	2704	2704	14%	0.0	99%	KX216638.1
Select seq gb|KX216637.1|	Zika virus isolate GS29-2016 envelope protein gene, partial cds	2704	2704	14%	0.0	99%	KX216637.1
Select seq gb|KX216635.1|	Zika virus isolate TS17-2016 envelope protein gene, partial cds	2700	2700	14%	0.0	99%	KX216635.1
Select seq gb|KX216634.1|	Zika virus isolate TS14-2016 envelope protein gene, partial cds	2700	2700	14%	0.0	99%	KX216634.1
Select seq gb|KX380262.1|	Zika virus isolate MS10-2016 envelope protein gene, partial cds	2695	2695	14%	0.0	99%	KX380262.1
Select seq gb|KX216632.1|	Zika virus isolate SIS58-2015 envelope protein gene, partial cds	2695	2695	14%	0.0	99%	KX216632.1
Select seq gb|KX380263.1|	Zika virus isolate FS92-2016 envelope protein gene, partial cds	2691	2691	14%	0.0	99%	KX380263.1
Select seq gb|KX216640.1|	Zika virus isolate CKS63-2014 envelope protein gene, partial cds	2691	2691	14%	0.0	99%	KX216640.1
Select seq gb|KX216636.1|	Zika virus isolate SS27-2016 envelope protein gene, partial cds	2691	2691	14%	0.0	99%	KX216636.1
Select seq gb|KX216633.1|	Zika virus isolate VS51-2016 envelope protein gene, partial cds	2686	2686	14%	0.0	99%	KX216633.1
Select seq gb|KJ634273.1|	Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds	2686	2686	14%	0.0	99%	KJ634273.1
Select seq gb|KX928077.1|	Zika virus isolate HN16 polyprotein gene, partial cds	2682	2682	14%	0.0	99%	KX928077.1
Select seq dbj|LC171327.1|	Zika virus gene for polyprotein, partial cds, strain: ZIKV/Hu/Chiba/S36/2016	2682	2682	14%	0.0	99%	LC171327.1
Select seq gb|KX216639.1|	Zika virus isolate SS57-2016 envelope protein gene, partial cds	2673	2673	14%	0.0	99%	KX216639.1
Select seq gb|KX101064.1|	Zika virus isolate Bahia11, partial genome	2268	10757	65%	0.0	92%	KX101064.1
Select seq gb|KX867786.1|	Zika virus isolate D304 polyprotein gene, partial cds	2192	2192	12%	0.0	97%	KX867786.1
Select seq gb|KU686218.1|	Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds	2051	2051	11%	0.0	99%	KU686218.1
Select seq gb|KU179098.1|	Zika virus isolate JMB-185 nonstructural protein 5 gene, partial cds	2017	2017	11%	0.0	99%	KU179098.1
Select seq gb|KU886298.1|	Zika virus isolate MN NS5 gene, partial cds	1862	1862	10%	0.0	99%	KU886298.1
Select seq gb|KX101061.1|	Zika virus isolate Bahia03, partial genome	1840	13887	78%	0.0	99%	KX101061.1
Select seq gb|KX059014.1|	Zika virus isolate Haiti/1230/2014 NS5 gene, partial cds	1833	1833	9%	0.0	99%	KX059014.1
Select seq gb|KX059013.1|	Zika virus isolate Haiti/1227/2014 NS5 gene, partial cds	1833	1833	9%	0.0	99%	KX059013.1
Select seq gb|KM078936.1|	Zika virus strain CHI1410214 NS5 protein gene, partial cds	1746	1746	9%	0.0	99%	KM078936.1
Select seq gb|KM078961.1|	Zika virus strain CHI2612114 NS5 protein gene, partial cds	1745	1745	9%	0.0	99%	KM078961.1
Select seq gb|KM078930.1|	Zika virus strain CHI2283714 NS5 protein gene, partial cds	1743	1743	9%	0.0	99%	KM078930.1
Select seq gb|KM078971.1|	Zika virus strain CHI2613014 NS5 protein gene, partial cds	1739	1739	9%	0.0	99%	KM078971.1
Select seq gb|KM078970.1|	Zika virus strain CHI2490414 NS5 protein gene, partial cds	1739	1739	9%	0.0	99%	KM078970.1
Select seq gb|KM078933.1|	Zika virus strain CHI1058514 NS5 protein gene, partial cds	1739	1739	9%	0.0	99%	KM078933.1
Select seq gb|KM078929.1|	Zika virus strain CHI1805214 NS5 protein gene, partial cds	1737	1737	9%	0.0	99%	KM078929.1
Select seq gb|KX377120.1|	Zika virus isolate SP54-2016 nonstructural protein 5 gene, partial cds	1694	1694	9%	0.0	99%	KX377120.1
Select seq gb|KX173841.1|	Zika virus isolate 16Z11 envelope protein gene, partial cds	1658	1658	9%	0.0	99%	KX173841.1
Select seq gb|KX173840.1|	Zika virus isolate 16Z10 envelope protein gene, partial cds	1658	1658	9%	0.0	99%	KX173840.1
Select seq gb|KJ873160.1|	Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds	1597	1597	8%	0.0	99%	KJ873160.1
Select seq gb|KX173843.1|	Zika virus isolate 16Z62 envelope protein gene, partial cds	1526	1526	8%	0.0	99%	KX173843.1
Select seq gb|KX173844.1|	Zika virus isolate 16Z62 envelope protein gene, partial cds	1516	1516	8%	0.0	99%	KX173844.1
Select seq gb|KJ873161.1|	Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds	1415	1415	7%	0.0	99%	KJ873161.1
Select seq gb|KM851039.1|	Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds	1382	1382	7%	0.0	99%	KM851039.1
Select seq gb|KU985087.1|	Zika virus isolate MEX/InDRE/Zika-2/2015 nonstructural protein 5 gene, partial cds	1348	1348	7%	0.0	99%	KU985087.1
Select seq gb|KM851038.1|	Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds	1346	1346	7%	0.0	98%	KM851038.1
Select seq gb|KU556802.1|	Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds	1342	1342	7%	0.0	99%	KU556802.1
Select seq gb|KU724096.1|	Zika virus isolate 259249_2015_Panama NS5B gene, partial cds	1301	1301	7%	0.0	99%	KU724096.1
Select seq gb|AF013415.1|	Zika virus strain MR-766 NS5 protein (NS5) gene, partial cds	1301	1301	10%	0.0	88%	AF013415.1
Select seq gb|KT200609.1|	Zika virus isolate BR/949/15 NS5 gene, partial cds	1245	1245	6%	0.0	99%	KT200609.1
Select seq gb|KU232300.1|	Zika virus isolate 067ZV_PEBR15 NS5 protein gene, partial cds	1234	1234	6%	0.0	99%	KU232300.1
Select seq gb|KU232290.1|	Zika virus isolate 036ZV_PEBR15 NS5 protein gene, partial cds	1225	1225	6%	0.0	99%	KU232290.1
Select seq gb|KU232297.1|	Zika virus isolate 049ZV_PEBR15 NS5 protein gene, partial cds	1223	1223	6%	0.0	99%	KU232297.1
Select seq gb|KU232294.1|	Zika virus isolate 061ZV_PEBR15 NS5 protein gene, partial cds	1216	1216	6%	0.0	99%	KU232294.1
Select seq gb|KU232292.1|	Zika virus isolate 054ZV_PEBR15 NS5 protein gene, partial cds	1213	1213	6%	0.0	99%	KU232292.1
Select seq gb|KU232298.1|	Zika virus isolate 050ZV_PEBR15 NS5 protein gene, partial cds	1209	1209	6%	0.0	99%	KU232298.1
Select seq gb|KU232293.1|	Zika virus isolate 057ZV_PEBR15 NS5 protein gene, partial cds	1207	1207	6%	0.0	99%	KU232293.1
Select seq gb|KU232296.1|	Zika virus isolate 045ZV_PEBR15 NS5 protein gene, partial cds	1205	1205	6%	0.0	99%	KU232296.1
Select seq gb|KU232295.1|	Zika virus isolate 068ZV_PEBR15 NS5 protein gene, partial cds	1202	1202	6%	0.0	99%	KU232295.1
Select seq gb|KU232288.1|	Zika virus isolate 001ZV_PEBR15 NS5 protein gene, partial cds	1191	1191	6%	0.0	99%	KU232288.1
Select seq gb|KU232289.1|	Zika virus isolate 020ZV_PEBR15 NS5 protein gene, partial cds	1187	1187	6%	0.0	99%	KU232289.1
Select seq gb|KX101063.1|	Zika virus isolate Bahia05, partial genome	1186	7409	42%	0.0	99%	KX101063.1
Select seq gb|KU232299.1|	Zika virus isolate 015ZV_PEBR15 NS5 protein gene, partial cds	1184	1184	6%	0.0	99%	KU232299.1
Select seq gb|KU232291.1|	Zika virus isolate 051ZV_PEBR15 NS5 protein gene, partial cds	1180	1180	6%	0.0	99%	KU232291.1
Select seq gb|KU724097.1|	Zika virus isolate 259250_2015_Panama NS5B gene, partial cds	1178	1178	6%	0.0	100%	KU724097.1
Select seq gb|KX101065.1|	Zika virus isolate Bahia15, partial genome	1171	7762	46%	0.0	99%	KX101065.1
Select seq gb|KU724098.1|	Zika virus isolate 259060_2015_Panama NS5B gene, partial cds	1166	1166	6%	0.0	99%	KU724098.1
Select seq gb|KU758878.1|	Zika virus polyprotein gene, partial cds	1133	1133	6%	0.0	99%	KU758878.1
Select seq gb|KU724099.1|	Zika virus isolate 259032_2015_Panama NS5B gene, partial cds	1101	1101	5%	0.0	99%	KU724099.1
Select seq gb|KF270886.1|	Zika virus strain CCB-870 envelope glycoprotein gene, partial cds	1081	1081	8%	0.0	89%	KF270886.1
Select seq gb|KX101062.1|	Zika virus isolate Bahia04, partial genome	1054	7321	41%	0.0	97%	KX101062.1
Select seq gb|AF372422.1|AF372422	Zika virus envelope protein (E) gene, partial cds	1023	1023	8%	0.0	87%	AF372422.1
Select seq gb|KU867812.1|	Zika virus isolate Jiangxi.CHN/01/2016 nonstructural protein 5 gene, partial cds	1012	1012	5%	0.0	99%	KU867812.1

 

[niman]

DOM_2016_BB-0216_SER

match

Sequences producing significant alignments:

Select:AllNone Selected:0

AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments

Sequences producing significant alignments:

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
Select seq gb|KX842449.2|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds	5434	16687	93%	0.0	99%	KX842449.2
Select seq gb|KX838905.2|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds	5434	16678	93%	0.0	99%	KX838905.2
Select seq gb|KX832731.1|	Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds	5434	16672	93%	0.0	99%	KX832731.1
Select seq gb|KX922706.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds	5433	16670	93%	0.0	99%	KX922706.1
Select seq gb|KX922703.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds	5431	16678	93%	0.0	99%	KX922703.1
Select seq gb|KX838904.2|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds	5427	16663	93%	0.0	99%	KX838904.2
Select seq gb|KX922704.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds	5425	16674	93%	0.0	99%	KX922704.1
Select seq gb|KU853013.1|	Zika virus isolate Dominican Republic/2016/PD2, complete genome	5425	16687	93%	0.0	99%	KU853013.1
Select seq gb|KU853012.1|	Zika virus isolate Dominican Republic/2016/PD1, complete genome	5424	16685	93%	0.0	99%	KU853012.1
Select seq gb|KX922707.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds	5416	16663	93%	0.0	99%	KX922707.1
Select seq gb|KX673530.1|	Zika virus isolate PHE_semen_Guadeloupe, complete genome	5416	16660	93%	0.0	99%	KX673530.1
Select seq gb|KX838906.2|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds	5413	16661	93%	0.0	99%	KX838906.2
Select seq gb|KX922708.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds	5407	16645	93%	0.0	98%	KX922708.1
Select seq gb|KX922705.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds	5405	16649	93%	0.0	98%	KX922705.1
Select seq gb|KX447518.1|	Zika virus isolate 1_0117_PF polyprotein gene, partial cds	5404	14660	82%	0.0	98%	KX447518.1
Select seq gb|KX447510.1|	Zika virus isolate 1_0049_PF polyprotein gene, complete cds	5404	16609	93%	0.0	98%	KX447510.1
Select seq gb|KX280026.1|	Zika virus isolate Paraiba_01, complete genome	5404	16607	93%	0.0	98%	KX280026.1
Select seq gb|KX879604.1|	Zika virus isolate SN089, complete genome	5398	16587	93%	0.0	98%	KX879604.1
Select seq gb|KX811222.1|	Zika virus isolate Brazil_2015_MG, complete genome	5398	16589	93%	0.0	98%	KX811222.1
Select seq gb|KX447512.1|	Zika virus isolate 1_0181_PF polyprotein gene, complete cds	5398	16607	93%	0.0	98%	KX447512.1
Select seq gb|KU509998.3|	Zika virus strain Haiti/1225/2014, complete genome	5398	16609	93%	0.0	98%	KU509998.3
Select seq gb|KU926310.1|	Zika virus isolate Rio-S1, complete genome	5398	16575	93%	0.0	98%	KU926310.1
Select seq gb|KU729218.1|	Zika virus isolate BeH828305 polyprotein gene, complete cds	5398	16584	93%	0.0	98%	KU729218.1
Select seq gb|KU707826.1|	Zika virus isolate SSABR1, complete genome	5398	16578	93%	0.0	98%	KU707826.1
Select seq gb|KU365779.1|	Zika virus strain BeH819966 polyprotein gene, complete cds	5398	16578	93%	0.0	98%	KU365779.1
Select seq gb|KU321639.1|	Zika virus strain ZikaSPH2015, complete genome	5398	16596	93%	0.0	98%	KU321639.1
Select seq gb|KX879603.1|	Zika virus isolate SN062, complete genome	5395	16580	93%	0.0	98%	KX879603.1
Select seq gb|KX197205.1|	Zika virus isolate 9, complete genome	5395	16593	93%	0.0	98%	KX197205.1
Select seq gb|KJ776791.2|	Zika virus strain H/PF/2013, complete genome	5395	16604	93%	0.0	98%	KJ776791.2
Select seq gb|KX447515.1|	Zika virus isolate 1_0030_PF polyprotein gene, complete cds	5395	16587	93%	0.0	98%	KX447515.1
Select seq gb|KX369547.1|	Zika virus strain PF13/251013-18, complete genome	5395	16604	93%	0.0	98%	KX369547.1
Select seq gb|KU940228.1|	Zika virus isolate Bahia07, partial genome	5395	16569	93%	0.0	98%	KU940228.1
Select seq gb|KU729217.2|	Zika virus isolate BeH823339 polyprotein gene, complete cds	5395	16593	93%	0.0	98%	KU729217.2
Select seq gb|KX806557.1|	Zika virus isolate TS17-2016, complete genome	5389	16539	93%	0.0	98%	KX806557.1
Select seq gb|KX447521.1|	Zika virus isolate 1_0080_PF polyprotein gene, partial cds	5389	13607	76%	0.0	98%	KX447521.1
Select seq gb|KX447514.1|	Zika virus isolate 1_0035_PF polyprotein gene, complete cds	5389	16587	93%	0.0	98%	KX447514.1
Select seq gb|KX447513.1|	Zika virus isolate 1_0134_PF polyprotein gene, complete cds	5389	16593	93%	0.0	98%	KX447513.1
Select seq gb|KX447509.1|	Zika virus isolate 1_0087_PF polyprotein gene, complete cds	5389	16596	93%	0.0	98%	KX447509.1
Select seq gb|KX197192.1|	Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome	5389	16582	93%	0.0	98%	KX197192.1
Select seq gb|KU940224.1|	Zika virus isolate Bahia09, partial genome	5389	16474	93%	0.0	98%	KU940224.1
Select seq gb|KU365780.1|	Zika virus strain BeH815744 polyprotein gene, complete cds	5389	16566	93%	0.0	98%	KU365780.1
Select seq gb|KU365777.1|	Zika virus strain BeH818995 polyprotein gene, complete cds	5389	16560	93%	0.0	98%	KU365777.1
Select seq gb|KX447517.1|	Zika virus isolate 1_0038_PF polyprotein gene, complete cds	5386	16560	93%	0.0	98%	KX447517.1
Select seq gb|KX447516.1|	Zika virus isolate 1_0111_PF polyprotein gene, complete cds	5386	16580	93%	0.0	98%	KX447516.1
Select seq gb|KX198135.1|	Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome	5386	16569	93%	0.0	98%	KX198135.1
Select seq gb|KX447511.1|	Zika virus isolate 1_0015_PF polyprotein gene, complete cds	5380	16587	93%	0.0	98%	KX447511.1
Select seq gb|KX520666.1|	Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds	5380	16551	93%	0.0	98%	KX520666.1
Select seq gb|KX051563.1|	Zika virus isolate Haiti/1/2016, complete genome	5380	16591	93%	0.0	98%	KX051563.1
Select seq gb|KU501217.1|	Zika virus strain 8375 polyprotein gene, complete cds	5380	16569	93%	0.0	98%	KU501217.1
Select seq gb|KU501216.1|	Zika virus strain 103344 polyprotein gene, complete cds	5380	16566	93%	0.0	98%	KU501216.1
Select seq gb|KX601168.1|	Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome	5377	16535	93%	0.0	98%	KX601168.1
Select seq gb|KX262887.1|	Zika virus isolate 103451, complete genome	5377	16575	93%	0.0	98%	KX262887.1
Select seq gb|KX087101.2|	Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome	5377	16535	93%	0.0	98%	KX087101.2
Select seq gb|KU991811.1|	Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds	5377	16602	93%	0.0	98%	KU991811.1
Select seq gb|KU955590.1|	Zika virus isolate Z16019 polyprotein gene, complete cds	5377	16526	93%	0.0	98%	KU955590.1
Select seq gb|KU926309.1|	Zika virus isolate Rio-U1, complete genome	5377	16575	93%	0.0	98%	KU926309.1
Select seq gb|KU497555.1|	Zika virus isolate Brazil-ZKV2015, complete genome	5377	16557	93%	0.0	98%	KU497555.1
Select seq gb|KU501215.1|	Zika virus strain PRVABC59, complete genome	5377	16541	93%	0.0	98%	KU501215.1
Select seq gb|KU312312.1|	Zika virus isolate Z1106033 polyprotein gene, complete cds	5377	16557	93%	0.0	98%	KU312312.1
Select seq gb|KX377337.1|	Zika virus strain PRVABC-59, complete genome	5371	16530	93%	0.0	98%	KX377337.1
Select seq gb|KU758877.1|	Zika virus isolate 17271 polyprotein gene, complete cds	5371	16555	93%	0.0	98%	KU758877.1
Select seq gb|KX156776.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome	5371	16557	93%	0.0	98%	KX156776.1
Select seq gb|KX156775.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome	5371	16546	93%	0.0	98%	KX156775.1
Select seq gb|KX117076.1|	Zika virus isolate Zhejiang04, complete genome	5371	16515	93%	0.0	98%	KX117076.1
Select seq gb|KX056898.1|	Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds	5371	16524	93%	0.0	98%	KX056898.1
Select seq gb|KU870645.1|	Zika virus isolate FB-GWUH-2016, complete genome	5371	16535	93%	0.0	98%	KU870645.1
Select seq gb|KU527068.1|	Zika virus strain Natal RGN, complete genome	5371	16587	93%	0.0	98%	KU527068.1
Select seq gb|KU647676.1|	Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds	5371	16560	93%	0.0	98%	KU647676.1
Select seq gb|KU365778.1|	Zika virus strain BeH819015 polyprotein gene, complete cds	5371	16546	93%	0.0	98%	KU365778.1
Select seq gb|KU820897.5|	Zika virus isolate FLR polyprotein gene, complete cds	5368	16548	93%	0.0	98%	KU820897.5
Select seq gb|KX694534.1|	Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome	5368	16571	93%	0.0	98%	KX694534.1
Select seq gb|KX447520.1|	Zika virus isolate 1_0016_PF polyprotein gene, partial cds	5368	14254	80%	0.0	98%	KX447520.1
Select seq gb|KX253996.1|	Zika virus isolate ZKC2/2016, complete genome	5368	16503	93%	0.0	98%	KX253996.1
Select seq gb|KX247646.1|	Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome	5368	16559	93%	0.0	98%	KX247646.1
Select seq gb|KX185891.1|	Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds	5368	16506	93%	0.0	98%	KX185891.1
Select seq gb|KX156774.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome	5368	16553	93%	0.0	98%	KX156774.1
Select seq gb|KX087102.1|	Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome	5368	16548	93%	0.0	98%	KX087102.1
Select seq gb|KU963796.1|	Zika virus isolate SZ-WIV01 polyprotein gene, complete cds	5368	16506	93%	0.0	98%	KU963796.1
Select seq gb|KU955589.1|	Zika virus isolate Z16006 polyprotein gene, complete cds	5368	16503	93%	0.0	98%	KU955589.1
Select seq gb|KU922960.1|	Zika virus isolate MEX/InDRE/Sm/2016, complete genome	5368	16542	93%	0.0	98%	KU922960.1
Select seq gb|KU922923.1|	Zika virus isolate MEX/InDRE/Lm/2016, complete genome	5368	16539	93%	0.0	98%	KU922923.1
Select seq gb|KU820899.2|	Zika virus isolate ZJ03, complete genome	5368	16503	93%	0.0	98%	KU820899.2
Select seq gb|KX266255.1|	Zika virus isolate ZIKV_SMGC-1, complete genome	5364	16499	93%	0.0	98%	KX266255.1
Select seq gb|KX893855.1|	Zika virus strain Zika virus/Homo sapiens/VEN/UF-2/2016, complete genome	5362	16533	93%	0.0	98%	KX893855.1
Select seq gb|KX702400.1|	Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome	5362	16530	93%	0.0	98%	KX702400.1
Select seq gb|KU866423.2|	Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds	5362	16497	93%	0.0	98%	KU866423.2
Select seq gb|KX247632.1|	Zika virus isolate MEX_I_7 polyprotein gene, complete cds	5362	16551	93%	0.0	98%	KX247632.1
Select seq gb|KU937936.1|	Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds	5362	16548	93%	0.0	98%	KU937936.1
Select seq gb|KU820898.1|	Zika virus isolate GZ01 polyprotein gene, complete cds	5362	16524	93%	0.0	98%	KU820898.1
Select seq gb|KU740184.2|	Zika virus isolate GD01 polyprotein gene, complete cds	5362	16521	93%	0.0	98%	KU740184.2
Select seq gb|KU761564.1|	Zika virus isolate GDZ16001 polyprotein gene, complete cds	5362	16521	93%	0.0	98%	KU761564.1
Select seq gb|KX446951.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome	5359	16544	93%	0.0	98%	KX446951.1
Select seq gb|KX446950.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome	5359	16535	93%	0.0	98%	KX446950.1
Select seq gb|KX766029.1|	Zika virus isolate R116265, complete genome	5353	16521	93%	0.0	98%	KX766029.1
Select seq gb|KX766028.1|	Zika virus isolate R114916, complete genome	5353	16521	93%	0.0	98%	KX766028.1
Select seq gb|KX548902.1|	Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds	5353	16546	93%	0.0	98%	KX548902.1
Select seq gb|KX856011.1|	Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome	5350	16539	93%	0.0	98%	KX856011.1
Select seq gb|KU744693.1|	Zika virus isolate VE_Ganxian, complete genome	5335	16389	93%	0.0	98%	KU744693.1
Select seq gb|KX813683.1|	Zika virus isolate ZKA-16-097 polyprotein gene, complete cds	5290	16339	93%	0.0	98%	KX813683.1
Select seq gb|KX827309.1|	Zika virus isolate ZKA-16-291 polyprotein gene, complete cds	5286	16349	93%	0.0	98%	KX827309.1

[niman]

DOM_2016_BB-0269_SER

match

Sequences producing significant alignments:

Select:AllNone Selected:0

AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments

Sequences producing significant alignments:

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
Select seq gb|KU853013.1|	Zika virus isolate Dominican Republic/2016/PD2, complete genome	4841	15797	90%	0.0	97%	KU853013.1
Select seq gb|KU853012.1|	Zika virus isolate Dominican Republic/2016/PD1, complete genome	4841	15799	90%	0.0	97%	KU853012.1
Select seq gb|KX842449.2|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds	4832	15790	90%	0.0	97%	KX842449.2
Select seq gb|KX922707.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds	4828	15775	90%	0.0	97%	KX922707.1
Select seq gb|KX922706.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds	4828	15775	90%	0.0	97%	KX922706.1
Select seq gb|KX922704.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds	4828	15772	90%	0.0	97%	KX922704.1
Select seq gb|KX832731.1|	Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds	4828	15781	90%	0.0	97%	KX832731.1
Select seq gb|KX838904.2|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds	4825	15765	90%	0.0	97%	KX838904.2
Select seq gb|KX922703.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds	4823	15777	90%	0.0	97%	KX922703.1
Select seq gb|KX838905.2|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds	4823	15775	90%	0.0	97%	KX838905.2
Select seq gb|KX673530.1|	Zika virus isolate PHE_semen_Guadeloupe, complete genome	4823	15765	90%	0.0	97%	KX673530.1
Select seq gb|KU991811.1|	Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds	4819	15700	90%	0.0	97%	KU991811.1
Select seq gb|KX051563.1|	Zika virus isolate Haiti/1/2016, complete genome	4814	15687	90%	0.0	97%	KX051563.1
Select seq gb|KU509998.3|	Zika virus strain Haiti/1225/2014, complete genome	4814	15700	90%	0.0	97%	KU509998.3
Select seq gb|KU647676.1|	Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds	4814	15673	90%	0.0	97%	KU647676.1
Select seq gb|KX838906.2|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds	4810	15757	90%	0.0	97%	KX838906.2
Select seq gb|KX811222.1|	Zika virus isolate Brazil_2015_MG, complete genome	4810	15709	90%	0.0	97%	KX811222.1
Select seq gb|KX197205.1|	Zika virus isolate 9, complete genome	4810	15696	90%	0.0	97%	KX197205.1
Select seq gb|KX694534.1|	Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome	4810	15664	90%	0.0	97%	KX694534.1
Select seq gb|KX280026.1|	Zika virus isolate Paraiba_01, complete genome	4810	15723	90%	0.0	97%	KX280026.1
Select seq gb|KX247646.1|	Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome	4810	15664	90%	0.0	97%	KX247646.1
Select seq gb|KU926310.1|	Zika virus isolate Rio-S1, complete genome	4810	15687	90%	0.0	97%	KU926310.1
Select seq gb|KU321639.1|	Zika virus strain ZikaSPH2015, complete genome	4810	15687	90%	0.0	97%	KU321639.1
Select seq gb|KX922708.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds	4805	15739	90%	0.0	97%	KX922708.1
Select seq gb|KX922705.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds	4805	15745	90%	0.0	97%	KX922705.1
Select seq gb|KX893855.1|	Zika virus strain Zika virus/Homo sapiens/VEN/UF-2/2016, complete genome	4805	15644	90%	0.0	97%	KX893855.1
Select seq gb|KX856011.1|	Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome	4805	15636	90%	0.0	97%	KX856011.1
Select seq gb|KJ776791.2|	Zika virus strain H/PF/2013, complete genome	4805	15694	90%	0.0	97%	KJ776791.2
Select seq gb|KU820897.5|	Zika virus isolate FLR polyprotein gene, complete cds	4805	15655	90%	0.0	97%	KU820897.5
Select seq gb|KX702400.1|	Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome	4805	15640	90%	0.0	97%	KX702400.1
Select seq gb|KX447512.1|	Zika virus isolate 1_0181_PF polyprotein gene, complete cds	4805	15698	90%	0.0	97%	KX447512.1
Select seq gb|KX447511.1|	Zika virus isolate 1_0015_PF polyprotein gene, complete cds	4805	15692	90%	0.0	97%	KX447511.1
Select seq gb|KX447510.1|	Zika virus isolate 1_0049_PF polyprotein gene, complete cds	4805	15703	90%	0.0	97%	KX447510.1
Select seq gb|KX548902.1|	Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds	4805	15678	90%	0.0	97%	KX548902.1
Select seq gb|KX369547.1|	Zika virus strain PF13/251013-18, complete genome	4805	15703	90%	0.0	97%	KX369547.1
Select seq gb|KU758877.1|	Zika virus isolate 17271 polyprotein gene, complete cds	4805	15658	90%	0.0	97%	KU758877.1
Select seq gb|KX262887.1|	Zika virus isolate 103451, complete genome	4805	15669	90%	0.0	97%	KX262887.1
Select seq gb|KX198135.1|	Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome	4805	15671	90%	0.0	97%	KX198135.1
Select seq gb|KX197192.1|	Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome	4805	15673	90%	0.0	97%	KX197192.1
Select seq gb|KX156776.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome	4805	15664	90%	0.0	97%	KX156776.1
Select seq gb|KX156775.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome	4805	15655	90%	0.0	97%	KX156775.1
Select seq gb|KX156774.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome	4805	15662	90%	0.0	97%	KX156774.1
Select seq gb|KX087102.1|	Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome	4805	15655	90%	0.0	97%	KX087102.1
Select seq gb|KU312312.1|	Zika virus isolate Z1106033 polyprotein gene, complete cds	4805	15658	90%	0.0	97%	KU312312.1
Select seq gb|KX766029.1|	Zika virus isolate R116265, complete genome	4801	15618	90%	0.0	97%	KX766029.1
Select seq gb|KX447517.1|	Zika virus isolate 1_0038_PF polyprotein gene, complete cds	4801	15664	90%	0.0	97%	KX447517.1
Select seq gb|KX447515.1|	Zika virus isolate 1_0030_PF polyprotein gene, complete cds	4801	15696	90%	0.0	97%	KX447515.1
Select seq gb|KX447514.1|	Zika virus isolate 1_0035_PF polyprotein gene, complete cds	4801	15683	90%	0.0	97%	KX447514.1
Select seq gb|KX447509.1|	Zika virus isolate 1_0087_PF polyprotein gene, complete cds	4801	15696	90%	0.0	97%	KX447509.1
Select seq gb|KX446950.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome	4801	15638	90%	0.0	97%	KX446950.1
Select seq gb|KU870645.1|	Zika virus isolate FB-GWUH-2016, complete genome	4801	15642	90%	0.0	97%	KU870645.1
Select seq gb|KU926309.1|	Zika virus isolate Rio-U1, complete genome	4801	15671	90%	0.0	97%	KU926309.1
Select seq gb|KU922960.1|	Zika virus isolate MEX/InDRE/Sm/2016, complete genome	4801	15655	90%	0.0	97%	KU922960.1
Select seq gb|KU922923.1|	Zika virus isolate MEX/InDRE/Lm/2016, complete genome	4801	15655	90%	0.0	97%	KU922923.1
Select seq gb|KU527068.1|	Zika virus strain Natal RGN, complete genome	4801	15682	90%	0.0	97%	KU527068.1
Select seq gb|KU729217.2|	Zika virus isolate BeH823339 polyprotein gene, complete cds	4800	15698	90%	0.0	97%	KU729217.2
Select seq gb|KX879604.1|	Zika virus isolate SN089, complete genome	4796	15682	90%	0.0	97%	KX879604.1
Select seq gb|KX447516.1|	Zika virus isolate 1_0111_PF polyprotein gene, complete cds	4796	15687	90%	0.0	97%	KX447516.1
Select seq gb|KX601168.1|	Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome	4796	15636	90%	0.0	97%	KX601168.1
Select seq gb|KX520666.1|	Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds	4796	15667	90%	0.0	97%	KX520666.1
Select seq gb|KX446951.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome	4796	15640	90%	0.0	97%	KX446951.1
Select seq gb|KX247632.1|	Zika virus isolate MEX_I_7 polyprotein gene, complete cds	4796	15646	90%	0.0	97%	KX247632.1
Select seq gb|KX087101.2|	Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome	4796	15636	90%	0.0	97%	KX087101.2
Select seq gb|KU937936.1|	Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds	4796	15647	90%	0.0	97%	KU937936.1
Select seq gb|KU940228.1|	Zika virus isolate Bahia07, partial genome	4796	15676	90%	0.0	97%	KU940228.1
Select seq gb|KU940224.1|	Zika virus isolate Bahia09, partial genome	4796	15650	89%	0.0	97%	KU940224.1
Select seq gb|KU497555.1|	Zika virus isolate Brazil-ZKV2015, complete genome	4796	15665	90%	0.0	97%	KU497555.1
Select seq gb|KU501217.1|	Zika virus strain 8375 polyprotein gene, complete cds	4796	15658	90%	0.0	97%	KU501217.1
Select seq gb|KU501215.1|	Zika virus strain PRVABC59, complete genome	4796	15642	90%	0.0	97%	KU501215.1
Select seq gb|KU365778.1|	Zika virus strain BeH819015 polyprotein gene, complete cds	4796	15647	90%	0.0	97%	KU365778.1
Select seq gb|KX447513.1|	Zika virus isolate 1_0134_PF polyprotein gene, complete cds	4792	15692	90%	0.0	97%	KX447513.1
Select seq gb|KX377337.1|	Zika virus strain PRVABC-59, complete genome	4792	15633	90%	0.0	97%	KX377337.1
Select seq gb|KU820898.1|	Zika virus isolate GZ01 polyprotein gene, complete cds	4792	15633	90%	0.0	97%	KU820898.1
Select seq gb|KU707826.1|	Zika virus isolate SSABR1, complete genome	4792	15680	90%	0.0	97%	KU707826.1
Select seq gb|KU501216.1|	Zika virus strain 103344 polyprotein gene, complete cds	4792	15655	90%	0.0	97%	KU501216.1
Select seq gb|KU365780.1|	Zika virus strain BeH815744 polyprotein gene, complete cds	4792	15671	90%	0.0	97%	KU365780.1
Select seq gb|KU365779.1|	Zika virus strain BeH819966 polyprotein gene, complete cds	4792	15680	90%	0.0	97%	KU365779.1
Select seq gb|KX879603.1|	Zika virus isolate SN062, complete genome	4787	15671	90%	0.0	97%	KX879603.1
Select seq gb|KX806557.1|	Zika virus isolate TS17-2016, complete genome	4787	15655	90%	0.0	97%	KX806557.1
Select seq gb|KX766028.1|	Zika virus isolate R114916, complete genome	4787	15620	90%	0.0	97%	KX766028.1
Select seq gb|KU729218.1|	Zika virus isolate BeH828305 polyprotein gene, complete cds	4787	15676	90%	0.0	97%	KU729218.1
Select seq gb|KU365777.1|	Zika virus strain BeH818995 polyprotein gene, complete cds	4787	15665	90%	0.0	97%	KU365777.1
Select seq gb|KX056898.1|	Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds	4783	15627	90%	0.0	97%	KX056898.1
Select seq gb|KU740184.2|	Zika virus isolate GD01 polyprotein gene, complete cds	4783	15624	90%	0.0	97%	KU740184.2
Select seq gb|KU761564.1|	Zika virus isolate GDZ16001 polyprotein gene, complete cds	4783	15624	90%	0.0	97%	KU761564.1
Select seq gb|KX117076.1|	Zika virus isolate Zhejiang04, complete genome	4778	15627	90%	0.0	97%	KX117076.1
Select seq gb|KU955590.1|	Zika virus isolate Z16019 polyprotein gene, complete cds	4778	15626	90%	0.0	97%	KU955590.1
Select seq gb|KX185891.1|	Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds	4774	15618	90%	0.0	96%	KX185891.1
Select seq gb|KU963796.1|	Zika virus isolate SZ-WIV01 polyprotein gene, complete cds	4774	15618	90%	0.0	96%	KU963796.1
Select seq gb|KX266255.1|	Zika virus isolate ZIKV_SMGC-1, complete genome	4769	15609	90%	0.0	96%	KX266255.1
Select seq gb|KU866423.2|	Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds	4769	15613	90%	0.0	96%	KU866423.2
Select seq gb|KX253996.1|	Zika virus isolate ZKC2/2016, complete genome	4769	15613	90%	0.0	96%	KX253996.1
Select seq gb|KU955589.1|	Zika virus isolate Z16006 polyprotein gene, complete cds	4769	15613	90%	0.0	96%	KU955589.1
Select seq gb|KU820899.2|	Zika virus isolate ZJ03, complete genome	4769	15613	90%	0.0	96%	KU820899.2
Select seq gb|KX813683.1|	Zika virus isolate ZKA-16-097 polyprotein gene, complete cds	4747	15445	90%	0.0	96%	KX813683.1
Select seq gb|KU744693.1|	Zika virus isolate VE_Ganxian, complete genome	4738	15471	90%	0.0	96%	KU744693.1
Select seq gb|KX447520.1|	Zika virus isolate 1_0016_PF polyprotein gene, partial cds	3748	13387	76%	0.0	97%	KX447520.1
Select seq gb|KX576684.1|	Zika virus vector pZIKV-ICD, complete sequence	3510	15722	90%	0.0	99%	KX576684.1
Select seq gb|KX447518.1|	Zika virus isolate 1_0117_PF polyprotein gene, partial cds	3507	13633	78%	0.0	99%	KX447518.1
Select seq gb|KX447521.1|	Zika virus isolate 1_0080_PF polyprotein gene, partial cds	3492	12390	71%	0.0	99%	KX447521.1

 

[niman]

DOM_2016_BB-0436_SER

match

Sequences producing significant alignments:

Select:AllNone Selected:0

AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments

Sequences producing significant alignments:

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
Select seq gb|KU853013.1|	Zika virus isolate Dominican Republic/2016/PD2, complete genome	18444	18444	100%	0.0	99%	KU853013.1
Select seq gb|KU853012.1|	Zika virus isolate Dominican Republic/2016/PD1, complete genome	18442	18442	100%	0.0	99%	KU853012.1
Select seq gb|KX842449.2|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds	18429	18429	100%	0.0	99%	KX842449.2
Select seq gb|KX922703.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds	18426	18426	100%	0.0	99%	KX922703.1
Select seq gb|KX922707.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds	18420	18420	100%	0.0	99%	KX922707.1
Select seq gb|KX838905.2|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds	18417	18417	100%	0.0	99%	KX838905.2
Select seq gb|KX832731.1|	Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds	18417	18417	100%	0.0	99%	KX832731.1
Select seq gb|KX922706.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds	18413	18413	100%	0.0	99%	KX922706.1
Select seq gb|KX922704.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds	18411	18411	100%	0.0	99%	KX922704.1
Select seq gb|KX673530.1|	Zika virus isolate PHE_semen_Guadeloupe, complete genome	18411	18411	100%	0.0	99%	KX673530.1
Select seq gb|KX838906.2|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds	18408	18408	100%	0.0	99%	KX838906.2
Select seq gb|KX838904.2|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds	18406	18406	100%	0.0	99%	KX838904.2
Select seq gb|KX922705.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds	18395	18395	100%	0.0	99%	KX922705.1
Select seq gb|KX922708.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds	18390	18390	100%	0.0	99%	KX922708.1
Select seq gb|KX447510.1|	Zika virus isolate 1_0049_PF polyprotein gene, complete cds	18354	18354	100%	0.0	99%	KX447510.1
Select seq gb|KX280026.1|	Zika virus isolate Paraiba_01, complete genome	18348	18348	100%	0.0	99%	KX280026.1
Select seq gb|KX447512.1|	Zika virus isolate 1_0181_PF polyprotein gene, complete cds	18345	18345	100%	0.0	99%	KX447512.1
Select seq gb|KX369547.1|	Zika virus strain PF13/251013-18, complete genome	18345	18345	100%	0.0	99%	KX369547.1
Select seq gb|KU509998.3|	Zika virus strain Haiti/1225/2014, complete genome	18345	18345	100%	0.0	99%	KU509998.3
Select seq gb|KJ776791.2|	Zika virus strain H/PF/2013, complete genome	18339	18339	100%	0.0	99%	KJ776791.2
Select seq gb|KX447509.1|	Zika virus isolate 1_0087_PF polyprotein gene, complete cds	18339	18339	100%	0.0	99%	KX447509.1
Select seq gb|KU991811.1|	Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds	18339	18339	100%	0.0	99%	KU991811.1
Select seq gb|KU729217.2|	Zika virus isolate BeH823339 polyprotein gene, complete cds	18339	18339	100%	0.0	99%	KU729217.2
Select seq gb|KX447513.1|	Zika virus isolate 1_0134_PF polyprotein gene, complete cds	18336	18336	100%	0.0	99%	KX447513.1
Select seq gb|KX811222.1|	Zika virus isolate Brazil_2015_MG, complete genome	18330	18330	100%	0.0	99%	KX811222.1
Select seq gb|KX197205.1|	Zika virus isolate 9, complete genome	18330	18330	100%	0.0	99%	KX197205.1
Select seq gb|KX447515.1|	Zika virus isolate 1_0030_PF polyprotein gene, complete cds	18330	18330	100%	0.0	99%	KX447515.1
Select seq gb|KX447511.1|	Zika virus isolate 1_0015_PF polyprotein gene, complete cds	18330	18330	100%	0.0	99%	KX447511.1
Select seq gb|KU321639.1|	Zika virus strain ZikaSPH2015, complete genome	18330	18330	100%	0.0	99%	KU321639.1
Select seq gb|KX879604.1|	Zika virus isolate SN089, complete genome	18327	18327	100%	0.0	99%	KX879604.1
Select seq gb|KX447514.1|	Zika virus isolate 1_0035_PF polyprotein gene, complete cds	18327	18327	100%	0.0	99%	KX447514.1
Select seq gb|KX051563.1|	Zika virus isolate Haiti/1/2016, complete genome	18327	18327	100%	0.0	99%	KX051563.1
Select seq gb|KX447516.1|	Zika virus isolate 1_0111_PF polyprotein gene, complete cds	18321	18321	100%	0.0	99%	KX447516.1
Select seq gb|KU729218.1|	Zika virus isolate BeH828305 polyprotein gene, complete cds	18321	18321	100%	0.0	99%	KU729218.1
Select seq gb|KU707826.1|	Zika virus isolate SSABR1, complete genome	18321	18321	100%	0.0	99%	KU707826.1
Select seq gb|KU527068.1|	Zika virus strain Natal RGN, complete genome	18321	18321	100%	0.0	99%	KU527068.1
Select seq gb|KU365779.1|	Zika virus strain BeH819966 polyprotein gene, complete cds	18321	18321	100%	0.0	99%	KU365779.1
Select seq gb|KX879603.1|	Zika virus isolate SN062, complete genome	18318	18318	100%	0.0	99%	KX879603.1
Select seq gb|KX262887.1|	Zika virus isolate 103451, complete genome	18318	18318	100%	0.0	99%	KX262887.1
Select seq gb|KX197192.1|	Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome	18318	18318	100%	0.0	99%	KX197192.1
Select seq gb|KU926310.1|	Zika virus isolate Rio-S1, complete genome	18318	18318	100%	0.0	99%	KU926310.1
Select seq gb|KU926309.1|	Zika virus isolate Rio-U1, complete genome	18318	18318	100%	0.0	99%	KU926309.1
Select seq gb|KU940228.1|	Zika virus isolate Bahia07, partial genome	18312	18312	100%	0.0	99%	KU940228.1
Select seq gb|KX694534.1|	Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome	18309	18309	100%	0.0	99%	KX694534.1
Select seq gb|KX198135.1|	Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome	18309	18309	100%	0.0	99%	KX198135.1
Select seq gb|KU501217.1|	Zika virus strain 8375 polyprotein gene, complete cds	18309	18309	100%	0.0	99%	KU501217.1
Select seq gb|KU365780.1|	Zika virus strain BeH815744 polyprotein gene, complete cds	18309	18309	100%	0.0	99%	KU365780.1
Select seq gb|KU497555.1|	Zika virus isolate Brazil-ZKV2015, complete genome	18305	18305	99%	0.0	99%	KU497555.1
Select seq gb|KU647676.1|	Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds	18303	18303	100%	0.0	99%	KU647676.1
Select seq gb|KU501216.1|	Zika virus strain 103344 polyprotein gene, complete cds	18303	18303	100%	0.0	99%	KU501216.1
Select seq gb|KU365777.1|	Zika virus strain BeH818995 polyprotein gene, complete cds	18303	18303	100%	0.0	99%	KU365777.1
Select seq gb|KX447517.1|	Zika virus isolate 1_0038_PF polyprotein gene, complete cds	18300	18300	100%	0.0	99%	KX447517.1
Select seq gb|KU758877.1|	Zika virus isolate 17271 polyprotein gene, complete cds	18300	18300	100%	0.0	99%	KU758877.1
Select seq gb|KX247646.1|	Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome	18300	18300	100%	0.0	99%	KX247646.1
Select seq gb|KX156776.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome	18300	18300	100%	0.0	99%	KX156776.1
Select seq gb|KX520666.1|	Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds	18294	18294	100%	0.0	99%	KX520666.1
Select seq gb|KX156774.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome	18294	18294	100%	0.0	99%	KX156774.1
Select seq gb|KU820897.5|	Zika virus isolate FLR polyprotein gene, complete cds	18291	18291	100%	0.0	99%	KU820897.5
Select seq gb|KX247632.1|	Zika virus isolate MEX_I_7 polyprotein gene, complete cds	18291	18291	100%	0.0	99%	KX247632.1
Select seq gb|KX156775.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome	18291	18291	100%	0.0	99%	KX156775.1
Select seq gb|KX087102.1|	Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome	18291	18291	100%	0.0	99%	KX087102.1
Select seq gb|KU365778.1|	Zika virus strain BeH819015 polyprotein gene, complete cds	18291	18291	100%	0.0	99%	KU365778.1
Select seq gb|KU312312.1|	Zika virus isolate Z1106033 polyprotein gene, complete cds	18291	18291	100%	0.0	99%	KU312312.1
Select seq gb|KU922960.1|	Zika virus isolate MEX/InDRE/Sm/2016, complete genome	18285	18285	100%	0.0	99%	KU922960.1
Select seq gb|KX856011.1|	Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome	18282	18282	100%	0.0	99%	KX856011.1
Select seq gb|KX806557.1|	Zika virus isolate TS17-2016, complete genome	18282	18282	100%	0.0	99%	KX806557.1
Select seq gb|KX548902.1|	Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds	18282	18282	100%	0.0	99%	KX548902.1
Select seq gb|KX446951.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome	18282	18282	100%	0.0	99%	KX446951.1
Select seq gb|KU937936.1|	Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds	18282	18282	100%	0.0	99%	KU937936.1
Select seq gb|KU922923.1|	Zika virus isolate MEX/InDRE/Lm/2016, complete genome	18282	18282	100%	0.0	99%	KU922923.1
Select seq gb|KU501215.1|	Zika virus strain PRVABC59, complete genome	18282	18282	100%	0.0	99%	KU501215.1
Select seq gb|KX893855.1|	Zika virus strain Zika virus/Homo sapiens/VEN/UF-2/2016, complete genome	18276	18276	100%	0.0	99%	KX893855.1
Select seq gb|KX601168.1|	Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome	18276	18276	100%	0.0	99%	KX601168.1
Select seq gb|KX446950.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome	18276	18276	100%	0.0	99%	KX446950.1
Select seq gb|KX087101.2|	Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome	18276	18276	100%	0.0	99%	KX087101.2
Select seq gb|KU870645.1|	Zika virus isolate FB-GWUH-2016, complete genome	18276	18276	100%	0.0	99%	KU870645.1
Select seq gb|KX702400.1|	Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome	18273	18273	100%	0.0	99%	KX702400.1
Select seq gb|KX377337.1|	Zika virus strain PRVABC-59, complete genome	18273	18273	100%	0.0	99%	KX377337.1
Select seq gb|KX056898.1|	Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds	18267	18267	100%	0.0	99%	KX056898.1
Select seq gb|KU955590.1|	Zika virus isolate Z16019 polyprotein gene, complete cds	18267	18267	100%	0.0	99%	KU955590.1
Select seq gb|KX766029.1|	Zika virus isolate R116265, complete genome	18264	18264	100%	0.0	99%	KX766029.1
Select seq gb|KU820898.1|	Zika virus isolate GZ01 polyprotein gene, complete cds	18264	18264	100%	0.0	99%	KU820898.1
Select seq gb|KX766028.1|	Zika virus isolate R114916, complete genome	18256	18256	100%	0.0	99%	KX766028.1
Select seq gb|KU740184.2|	Zika virus isolate GD01 polyprotein gene, complete cds	18254	18254	100%	0.0	99%	KU740184.2
Select seq gb|KU761564.1|	Zika virus isolate GDZ16001 polyprotein gene, complete cds	18254	18254	100%	0.0	99%	KU761564.1
Select seq gb|KX117076.1|	Zika virus isolate Zhejiang04, complete genome	18249	18249	100%	0.0	99%	KX117076.1
Select seq gb|KX185891.1|	Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds	18240	18240	100%	0.0	99%	KX185891.1
Select seq gb|KU963796.1|	Zika virus isolate SZ-WIV01 polyprotein gene, complete cds	18240	18240	100%	0.0	99%	KU963796.1
Select seq gb|KX253996.1|	Zika virus isolate ZKC2/2016, complete genome	18236	18236	100%	0.0	99%	KX253996.1
Select seq gb|KU955589.1|	Zika virus isolate Z16006 polyprotein gene, complete cds	18236	18236	100%	0.0	99%	KU955589.1
Select seq gb|KU820899.2|	Zika virus isolate ZJ03, complete genome	18236	18236	100%	0.0	99%	KU820899.2
Select seq gb|KX266255.1|	Zika virus isolate ZIKV_SMGC-1, complete genome	18233	18233	100%	0.0	99%	KX266255.1
Select seq gb|KU866423.2|	Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds	18231	18231	100%	0.0	99%	KU866423.2
Select seq gb|KU940224.1|	Zika virus isolate Bahia09, partial genome	18218	18218	99%	0.0	99%	KU940224.1
Select seq gb|KU744693.1|	Zika virus isolate VE_Ganxian, complete genome	18096	18096	100%	0.0	99%	KU744693.1
Select seq gb|KX827309.1|	Zika virus isolate ZKA-16-291 polyprotein gene, complete cds	18083	18083	100%	0.0	99%	KX827309.1
Select seq gb|KX813683.1|	Zika virus isolate ZKA-16-097 polyprotein gene, complete cds	18069	18069	100%	0.0	99%	KX813683.1
Select seq gb|KU681081.3|	Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome	18006	18006	100%	0.0	99%	KU681081.3
Select seq gb|KX694532.1|	Zika virus strain ZIKV/Homo sapiens/THA/PLCal_ZV/2013, complete genome	17897	17897	100%	0.0	99%	KX694532.1
Select seq gb|KU955593.1|	Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome	17717	17717	100%	0.0	98%	KU955593.1
Select seq gb|JN860885.1|	Zika virus isolate FSS13025 polyprotein gene, partial cds	17717	17717	99%	0.0	98%	JN860885.1
Select seq gb|KF993678.1|	Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds	17667	17667	98%	0.0	99%	KF993678.1
Select seq gb|EU545988.1|	Zika virus polyprotein gene, complete cds	17562	17562	100%	0.0	98%	EU545988.1
Select seq gb|KU681082.3|	Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome	17411	17411	100%	0.0	98%	KU681082.3
Select seq gb|KX601167.1|	Zika virus strain ZIKV/Aedes sp./MYS/P6-740/1966, complete genome	16379	16379	100%	0.0	95%	KX601167.1
Select seq gb|KX694533.1|	Zika virus strain ZIKV/Aedes aegypti/MYS/P6-740/1966, complete genome	16370	16370	100%	0.0	95%	KX694533.1
Select seq gb|HQ234499.1|	Zika virus isolate P6-740 polyprotein gene, partial cds	16370	16370	99%	0.0	95%	HQ234499.1
Select seq gb|KX377336.1|	Zika virus strain P6-740, complete genome	16365	16365	100%	0.0	95%	KX377336.1
Select seq gb|KX447518.1|	Zika virus isolate 1_0117_PF polyprotein gene, partial cds	16193	16193	88%	0.0	99%	KX447518.1
Select seq gb|KF383115.1|	Zika virus strain ArB1362 polyprotein gene, complete cds	13329	13329	100%	0.0	89%	KF383115.1
Select seq gb|KF268949.1|	Zika virus isolate ARB15076 polyprotein gene, complete cds	13324	13324	100%	0.0	89%	KF268949.1
Select seq gb|KX830960.1|	Zika virus culture ATCC:VR-84 isolate MR776, complete genome	13317	13317	100%	0.0	89%	KX830960.1
Select seq gb|KU720415.1|	Zika virus strain MR 766 polyprotein gene, complete cds	13317	13317	100%	0.0	89%	KU720415.1
Select seq gb|HQ234498.1|	Zika virus isolate MR_766 polyprotein gene, partial cds	13311	13311	99%	0.0	89%	HQ234498.1
Select seq gb|DQ859059.1|	Zika virus strain MR 766 polyprotein gene, complete cds	13311	13311	100%	0.0	89%	DQ859059.1
Select seq gb|KF268950.1|	Zika virus isolate ARB7701 polyprotein gene, complete cds	13308	13308	100%	0.0	89%	KF268950.1
Select seq gb|KF268948.1|	Zika virus isolate ARB13565 polyprotein gene, complete cds	13306	13306	100%	0.0	89%	KF268948.1
Select seq gb|KX377335.1|	Zika virus strain MR-766, complete genome	13304	13304	100%	0.0	89%	KX377335.1
Select seq gb|KF383119.1|	Zika virus strain ArD158084 polyprotein gene, complete cds	13299	13299	100%	0.0	89%	KF383119.1
Select seq dbj|LC002520.1|	Zika virus genomic RNA, complete genome, strain: MR766-NIID	13295	13295	100%	0.0	89%	LC002520.1
Select seq gb|KU955595.1|	Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome	13290	13290	100%	0.0	89%	KU955595.1
Select seq gb|KU955592.1|	Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome	13281	13281	100%	0.0	89%	KU955592.1
Select seq gb|KX601169.1|	Zika virus strain ZIKV/Macaca mulatta/UGA/MR-766/1947, complete genome	13279	13279	100%	0.0	89%	KX601169.1
Select seq gb|KU963573.1|	Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds	13279	13279	100%	0.0	89%	KU963573.1
Select seq gb|KU955594.1|	Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome	13279	13279	100%	0.0	89%	KU955594.1
Select seq gb|KX198134.1|	Zika virus strain ZIKV/Aedes africanus/SEN/DAK-AR-41524_A1C1-V2/1984, complete genome	13268	13751	100%	0.0	89%	KX198134.1
Select seq gb|KU955591.1|	Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome	13263	13263	100%	0.0	89%	KU955591.1
Select seq gb|KF383116.1|	Zika virus strain ArD7117 polyprotein gene, complete cds	13257	13257	100%	0.0	89%	KF383116.1
Select seq gb|AY632535.2|	Zika virus strain MR 766, complete genome	13236	13236	100%	0.0	89%	AY632535.2
Select seq gb|HQ234501.1|	Zika virus isolate ArD_41519 polyprotein gene, partial cds	13232	13232	99%	0.0	89%	HQ234501.1
Select seq gb|KX601166.1|	Zika virus strain ZIKV/Aedes africanus/SEN/DakAr41524/1984, complete genome	13207	13207	100%	0.0	88%	KX601166.1
Select seq gb|KF383117.1|	Zika virus strain ArD128000 polyprotein gene, complete cds	13178	13178	100%	0.0	88%	KF383117.1
Select seq gb|KU963574.1|	Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds	13171	13273	100%	0.0	88%	KU963574.1
Select seq gb|HQ234500.1|	Zika virus isolate IbH_30656 polyprotein gene, partial cds	13171	13171	99%	0.0	88%	HQ234500.1
Select seq gb|KF383118.1|	Zika virus strain ArD157995 polyprotein gene, complete cds	12972	13040	100%	0.0	88%	KF383118.1
Select seq gb|KF383121.1|	Zika virus strain ArD158095 polyprotein gene, partial cds	12900	12900	97%	0.0	89%	KF383121.1
Select seq gb|KX447520.1|	Zika virus isolate 1_0016_PF polyprotein gene, partial cds	11499	15792	86%	0.0	99%	KX447520.1
Select seq gb|KX576684.1|	Zika virus vector pZIKV-ICD, complete sequence	10922	18351	100%	0.0	99%	KX576684.1
Select seq gb|KF383120.1|	Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence	10846	10846	97%	0.0	84%	KF383120.1
Select seq gb|KX447519.1|	Zika virus isolate 1_0199_PF polyprotein gene, partial cds	9997	16070	87%	0.0	99%	KX447519.1
Select seq gb|KX447521.1|	Zika virus isolate 1_0080_PF polyprotein gene, partial cds	9836	14948	81%	0.0	99%	KX447521.1
Select seq gb|KX830961.1|	Synthetic construct, complete sequence	9387	13324	100%	0.0	89%	KX830961.1
Select seq gb|KU940227.1|	Zika virus isolate Bahia08, partial genome	5020	14384	87%	0.0	95%	KU940227.1
Select seq gb|KX212103.1|	Zika virus isolate BRZIKV_AB_ES polyprotein gene, partial cds	5003	5003	27%	0.0	99%	KX212103.1
Select seq gb|KU758869.1|	Zika virus isolate 05211 polyprotein gene, partial cds	4973	4973	26%	0.0	99%	KU758869.1
Select seq gb|KU758875.1|	Zika virus isolate 15042 polyprotein gene, partial cds	4964	4964	27%	0.0	99%	KU758875.1
Select seq gb|KU758871.1|	Zika virus isolate 17170 polyprotein gene, partial cds	4962	4962	27%	0.0	99%	KU758871.1
Select seq gb|KU758870.1|	Zika virus isolate 17160 polyprotein gene, partial cds	4955	4955	27%	0.0	99%	KU758870.1
Select seq gb|KU758873.1|	Zika virus isolate 18246 polyprotein gene, partial cds	4953	4953	27%	0.0	99%	KU758873.1
Select seq gb|KU312314.1|	Zika virus isolate Z1106031 polyprotein gene, partial cds	4953	4953	27%	0.0	99%	KU312314.1
Select seq gb|KU758868.1|	Zika virus isolate 27229 polyprotein gene, partial cds	4942	4942	26%	0.0	99%	KU758868.1
Select seq gb|KU758872.1|	Zika virus isolate 01170 polyprotein gene, partial cds	4940	4940	27%	0.0	99%	KU758872.1
Select seq gb|KU758874.1|	Zika virus isolate 20114 polyprotein gene, partial cds	4938	4938	26%	0.0	99%	KU758874.1
Select seq gb|KU758876.1|	Zika virus isolate 21068 polyprotein gene, partial cds	4929	4929	27%	0.0	99%	KU758876.1
Select seq gb|KU312313.1|	Zika virus isolate Z1106032 polyprotein gene, partial cds	4926	4926	27%	0.0	99%	KU312313.1
Select seq gb|KU646828.1|	Zika virus isolate Si322 polyprotein gene, partial cds	4623	4623	25%	0.0	99%	KU646828.1
Select seq gb|KU646827.1|	Zika virus isolate Si323 polyprotein gene, partial cds	4614	4614	25%	0.0	99%	KU646827.1
Select seq gb|KX101060.1|	Zika virus isolate Bahia02, partial genome	4195	13267	75%	0.0	95%	KX101060.1
Select seq gb|KU312315.1|	Zika virus isolate Z1106027 polyprotein gene, partial cds	3413	3413	18%	0.0	99%	KU312315.1
Select seq gb|KU740199.1|	Zika virus isolate VE_Ganxian2016 polyprotein gene, partial cds	3202	3202	17%	0.0	99%	KU740199.1
Select seq gb|KX101066.1|	Zika virus isolate Bahia01, partial genome	3094	13068	74%	0.0	99%	KX101066.1
Select seq gb|DQ859064.1|	Spondweni virus strain SM-6 V-1 polyprotein gene, complete cds	2870	4211	95%	0.0	71%	DQ859064.1
Select seq gb|KX216638.1|	Zika virus isolate ESS23-2015 envelope protein gene, partial cds	2695	2695	14%	0.0	99%	KX216638.1
Select seq gb|KX216637.1|	Zika virus isolate GS29-2016 envelope protein gene, partial cds	2695	2695	14%	0.0	99%	KX216637.1
Select seq gb|KX216635.1|	Zika virus isolate TS17-2016 envelope protein gene, partial cds	2691	2691	14%	0.0	99%	KX216635.1
Select seq gb|KX216634.1|	Zika virus isolate TS14-2016 envelope protein gene, partial cds	2691	2691	14%	0.0	99%	KX216634.1
Select seq gb|KX380262.1|	Zika virus isolate MS10-2016 envelope protein gene, partial cds	2686	2686	14%	0.0	99%	KX380262.1
Select seq gb|KX216632.1|	Zika virus isolate SIS58-2015 envelope protein gene, partial cds	2686	2686	14%	0.0	99%	KX216632.1
Select seq gb|KX380263.1|	Zika virus isolate FS92-2016 envelope protein gene, partial cds	2682	2682	14%	0.0	99%	KX380263.1
Select seq gb|KX216640.1|	Zika virus isolate CKS63-2014 envelope protein gene, partial cds	2682	2682	14%	0.0	99%	KX216640.1
Select seq gb|KX216636.1|	Zika virus isolate SS27-2016 envelope protein gene, partial cds	2682	2682	14%	0.0	99%	KX216636.1
Select seq gb|KX216633.1|	Zika virus isolate VS51-2016 envelope protein gene, partial cds	2677	2677	14%	0.0	99%	KX216633.1
Select seq gb|KJ634273.1|	Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds	2677	2677	14%	0.0	99%	KJ634273.1
Select seq gb|KX928077.1|	Zika virus isolate HN16 polyprotein gene, partial cds	2673	2673	14%	0.0	99%	KX928077.1
Select seq dbj|LC171327.1|	Zika virus gene for polyprotein, partial cds, strain: ZIKV/Hu/Chiba/S36/2016	2673	2673	14%	0.0	99%	LC171327.1
Select seq gb|KX216639.1|	Zika virus isolate SS57-2016 envelope protein gene, partial cds	2664	2664	14%	0.0	99%	KX216639.1
Select seq gb|KX101064.1|	Zika virus isolate Bahia11, partial genome	2268	10757	65%	0.0	92%	KX101064.1
Select seq gb|KX867786.1|	Zika virus isolate D304 polyprotein gene, partial cds	2183	2183	12%	0.0	97%	KX867786.1
Select seq gb|KU686218.1|	Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds	2057	2057	11%	0.0	99%	KU686218.1
Select seq gb|KU179098.1|	Zika virus isolate JMB-185 nonstructural protein 5 gene, partial cds	2012	2012	11%	0.0	99%	KU179098.1
Select seq gb|KU886298.1|	Zika virus isolate MN NS5 gene, partial cds	1862	1862	10%	0.0	99%	KU886298.1
Select seq gb|KX059014.1|	Zika virus isolate Haiti/1230/2014 NS5 gene, partial cds	1833	1833	9%	0.0	99%	KX059014.1
Select seq gb|KX059013.1|	Zika virus isolate Haiti/1227/2014 NS5 gene, partial cds	1833	1833	9%	0.0	99%	KX059013.1
Select seq gb|KX101061.1|	Zika virus isolate Bahia03, partial genome	1831	13855	78%	0.0	99%	KX101061.1
Select seq gb|KM078936.1|	Zika virus strain CHI1410214 NS5 protein gene, partial cds	1746	1746	9%	0.0	99%	KM078936.1
Select seq gb|KM078961.1|	Zika virus strain CHI2612114 NS5 protein gene, partial cds	1745	1745	9%	0.0	99%	KM078961.1
Select seq gb|KM078930.1|	Zika virus strain CHI2283714 NS5 protein gene, partial cds	1743	1743	9%	0.0	99%	KM078930.1
Select seq gb|KM078971.1|	Zika virus strain CHI2613014 NS5 protein gene, partial cds	1739	1739	9%	0.0	99%	KM078971.1
Select seq gb|KM078970.1|	Zika virus strain CHI2490414 NS5 protein gene, partial cds	1739	1739	9%	0.0	99%	KM078970.1
Select seq gb|KM078933.1|	Zika virus strain CHI1058514 NS5 protein gene, partial cds	1739	1739	9%	0.0	99%	KM078933.1
Select seq gb|KM078929.1|	Zika virus strain CHI1805214 NS5 protein gene, partial cds	1737	1737	9%	0.0	99%	KM078929.1
Select seq gb|KX377120.1|	Zika virus isolate SP54-2016 nonstructural protein 5 gene, partial cds	1694	1694	9%	0.0	99%	KX377120.1
Select seq gb|KX173841.1|	Zika virus isolate 16Z11 envelope protein gene, partial cds	1649	1649	9%	0.0	99%	KX173841.1
Select seq gb|KX173840.1|	Zika virus isolate 16Z10 envelope protein gene, partial cds	1649	1649	9%	0.0	99%	KX173840.1
Select seq gb|KJ873160.1|	Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds	1597	1597	8%	0.0	99%	KJ873160.1
Select seq gb|KX173843.1|	Zika virus isolate 16Z62 envelope protein gene, partial cds	1517	1517	8%	0.0	99%	KX173843.1
Select seq gb|KX173844.1|	Zika virus isolate 16Z62 envelope protein gene, partial cds	1507	1507	8%	0.0	99%	KX173844.1
Select seq gb|KJ873161.1|	Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds	1415	1415	7%	0.0	99%	KJ873161.1
Select seq gb|KM851039.1|	Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds	1382	1382	7%	0.0	99%	KM851039.1
Select seq gb|KU985087.1|	Zika virus isolate MEX/InDRE/Zika-2/2015 nonstructural protein 5 gene, partial cds	1348	1348	7%	0.0	99%	KU985087.1
Select seq gb|KM851038.1|	Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds	1346	1346	7%	0.0	98%	KM851038.1
Select seq gb|KU556802.1|	Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds	1342	1342	7%	0.0	99%	KU556802.1
Select seq gb|KU724096.1|	Zika virus isolate 259249_2015_Panama NS5B gene, partial cds	1301	1301	7%	0.0	99%	KU724096.1
Select seq gb|AF013415.1|	Zika virus strain MR-766 NS5 protein (NS5) gene, partial cds	1301	1301	10%	0.0	88%	AF013415.1
Select seq gb|KU232300.1|	Zika virus isolate 067ZV_PEBR15 NS5 protein gene, partial cds	1234	1234	6%	0.0	99%	KU232300.1
Select seq gb|KT200609.1|	Zika virus isolate BR/949/15 NS5 gene, partial cds	1231	1231	6%	0.0	99%	KT200609.1
Select seq gb|KU232290.1|	Zika virus isolate 036ZV_PEBR15 NS5 protein gene, partial cds	1225	1225	6%	0.0	99%	KU232290.1
Select seq gb|KU232297.1|	Zika virus isolate 049ZV_PEBR15 NS5 protein gene, partial cds	1223	1223	6%	0.0	99%	KU232297.1
Select seq gb|KU232294.1|	Zika virus isolate 061ZV_PEBR15 NS5 protein gene, partial cds	1216	1216	6%	0.0	99%	KU232294.1
Select seq gb|KU232292.1|	Zika virus isolate 054ZV_PEBR15 NS5 protein gene, partial cds	1213	1213	6%	0.0	99%	KU232292.1
Select seq gb|KU232298.1|	Zika virus isolate 050ZV_PEBR15 NS5 protein gene, partial cds	1209	1209	6%	0.0	99%	KU232298.1
Select seq gb|KU232293.1|	Zika virus isolate 057ZV_PEBR15 NS5 protein gene, partial cds	1207	1207	6%	0.0	99%	KU232293.1
Select seq gb|KU232296.1|	Zika virus isolate 045ZV_PEBR15 NS5 protein gene, partial cds	1205	1205	6%	0.0	99%	KU232296.1
Select seq gb|KU232295.1|	Zika virus isolate 068ZV_PEBR15 NS5 protein gene, partial cds	1202	1202	6%	0.0	99%	KU232295.1
Select seq gb|KU232288.1|	Zika virus isolate 001ZV_PEBR15 NS5 protein gene, partial cds	1191	1191	6%	0.0	99%	KU232288.1
Select seq gb|KU232289.1|	Zika virus isolate 020ZV_PEBR15 NS5 protein gene, partial cds	1187	1187	6%	0.0	99%	KU232289.1
Select seq gb|KU232299.1|	Zika virus isolate 015ZV_PEBR15 NS5 protein gene, partial cds	1184	1184	6%	0.0	99%	KU232299.1
Select seq gb|KX101063.1|	Zika virus isolate Bahia05, partial genome	1180	7407	42%	0.0	99%	KX101063.1
Select seq gb|KU232291.1|	Zika virus isolate 051ZV_PEBR15 NS5 protein gene, partial cds	1180	1180	6%	0.0	99%	KU232291.1
Select seq gb|KU724097.1|	Zika virus isolate 259250_2015_Panama NS5B gene, partial cds	1178	1178	6%	0.0	100%	KU724097.1
Select seq gb|KX101065.1|	Zika virus isolate Bahia15, partial genome	1171	7766	46%	0.0	99%	KX101065.1
Select seq gb|KU724098.1|	Zika virus isolate 259060_2015_Panama NS5B gene, partial cds	1166	1166	6%	0.0	99%	KU724098.1
Select seq gb|KU758878.1|	Zika virus polyprotein gene, partial cds	1133	1133	6%	0.0	99%	KU758878.1
Select seq gb|KU724099.1|	Zika virus isolate 259032_2015_Panama NS5B gene, partial cds	1101	1101	5%	0.0	99%	KU724099.1
Select seq gb|KF270886.1|	Zika virus strain CCB-870 envelope glycoprotein gene, partial cds	1086	1086	8%	0.0	89%	KF270886.1
Select seq gb|KX101062.1|	Zika virus isolate Bahia04, partial genome	1045	7321	41%	0.0	97%	KX101062.1
Select seq gb|AF372422.1|AF372422	Zika virus envelope protein (E) gene, partial cds	1020	1020	8%	0.0	87%	AF372422.1
Select seq gb|KU867812.1|	Zika virus isolate Jiangxi.CHN/01/2016 nonstructural protein 5 gene, partial cds	1018	1018	5%	0.0	100%	KU867812.1