2016 Low Path H5N1 In Scotland

niman · January 15, 2016

APHA has released a full set of sequences from 2016 low path H5N1 in Scotland.

niman · January 15, 2016

Isolate name:

A/chicken/Scotland/532/2016

Isolate ID:

EPI_ISL_205833

Passage details/history:

clinical material

Type:

A / H5N1

Lineage:

Sample information

Collection date:

2016-01-09

Host	Gallus gallus

Additional host information:

Domestic status:

Domestic

Is vaccinated:

Location:

United Kingdom / Fife

Additional location information:

Health status:

Specimen source:

Cloacal swab

Strain or commercial product name used for vaccination:

Institute information

Originating lab:

Animal and Plant Health Agency (APHA)

Sample ID given by the sample provider:

AV-16-000532

Address:

Animal and Plant Health Agency (APHA)
 Woodham Lane
Surrey,  KT15 3NB
United Kingdom

Submitting lab:

Animal and Plant Health Agency (APHA)

Sample ID given by the submitting laboratory:

AV-16-000532

Authors:

Seekings, A;
Ellis, R;
McGinn, N;
Mynn, J;
Coward, V;
Reid, S;
Banks, J;
Brookes, S;
Brown, I

Address:

Animal and Plant Health Agency (APHA) 
Virology Department
 Woodham Lane
New Haw, Addlestone, Surrey KT15 3NB
United Kingdom

Publication

In vivo antiviral resistance

Antiviral resistance tested by experimental procedures

Adamantanes:

Unknown

Oseltamivir:

Unknown

Zanamivir:

Unknown

Peramivir:

Unknown

Other:

Unknown

Additional information

Antigenic characterization:

Note:

Sequence

segment	identifier	length	accession #
PB2	A/chicken/Scotland/532/2016	2270	EPI687184
PB1	A/chicken/Scotland/532/2016	2212	EPI687185
PA	A/chicken/Scotland/532/2016	2151	EPI687186
HA	A/chicken/Scotland/532/2016	1698	EPI687187
NP	A/chicken/Scotland/532/2016	1551	EPI687188
NA	A/chicken/Scotland/532/2016	1410	EPI687189
MP	A/chicken/Scotland/532/2016	989	EPI687190
NS	A/chicken/Scotland/532/2016	852	EPI687191

Submitter information

Submitter:

Seekings, Amanda

Submission Date:

2016-01-14

Last modifier:

Seekings, Amanda

Last modified:

2016-01-15

Address:

Animal and Plant Health Agency (APHA) 
Virology Department
 Woodham Lane
New Haw, Addlestone, Surrey KT15 3NB
United Kingdom

niman · January 15, 2016

Descriptions

Segment-ID	Name	Score	E-Value	Identity
EPI687187	A/chicken/Scotland/532/2016 (A/H5N1) segment 4 (HA)	3133.0	0.000000e+00	1698/1698 (100%)
EPI401800	A/little grebe/Xianghai/429/2011 (A/H5N2) segment 4 (HA)	2861.6	0.000000e+00	1651/1700 (97%)
EPI401775	A/baikal teal/Xianghai/426/2011 (A/H5N2) segment 4 (HA)	2861.6	0.000000e+00	1651/1700 (97%)
EPI401776	A/spot-billed duck/Xianghai/427/2011 (A/H5N2) segment 4 (HA)	2856.0	0.000000e+00	1650/1700 (97%)
EPI401801	A/green-winged teal/Xianghai/430/2011 (A/H5N2) segment 4 (HA)	2839.4	0.000000e+00	1648/1701 (96%)
EPI515479	A/razorbill/Scotland/7343/14 (A/H5) segment 4 (HA)	2833.9	0.000000e+00	1646/1700 (96%)
EPI401777	A/canvasback/Xianghai/428/2011 (A/H5N2) segment 4 (HA)	2789.6	0.000000e+00	1639/1701 (96%)
EPI463587	A/tundra swan/Shimane/3211A001/2011 (A/H5N2) segment 4 (HA)	2780.3	0.000000e+00	1637/1701 (96%)
EPI346524	A/whooper swan/Germany-HE/R535/2009 (A/H5N2) segment 4 (HA)	2774.8	0.000000e+00	1635/1700 (96%)
EPI513954	A/mallard/Sweden/79167/2008 (A/H0) segment 4 (HA)	2772.9	0.000000e+00	1635/1700 (96%)
EPI463189	A/mallard/Sweden/101226/2009 (A/H5N3) segment 4 (HA)	2772.9	0.000000e+00	1636/1701 (96%)
EPI463188	A/mallard/Sweden/101224/2009 (A/H5N9) segment 4 (HA)	2772.9	0.000000e+00	1636/1701 (96%)
EPI514999	A/wild duck/Korea/PSC18-20/2010 (A/H5N8) segment 4 (HA)	2769.2	0.000000e+00	1633/1698 (96%)
EPI341765	A/duck/Mongolia/194/2011 (A/H5N3) segment 4 (HA)	2767.4	0.000000e+00	1635/1701 (96%)
EPI341764	A/duck/Mongolia/195/2011 (A/H5N3) segment 4 (HA)	2767.4	0.000000e+00	1635/1701 (96%)
EPI257228	A/Anas platyrhynchos/09-884/2008 (A/H5N3) segment 4 (HA)	2767.4	0.000000e+00	1634/1700 (96%)
EPI257220	A/Anas platyrhynchos/Belgium/09-762-P1/2008 (A/H5N1) segment 4 (HA)	2767.4	0.000000e+00	1634/1700 (96%)
EPI102615	A/mallard/Bavaria/1/2005 (A/H5N2) segment 4 (HA)	2767.4	0.000000e+00	1634/1700 (96%)
EPI514998	A/wild duck/Korea/PSC18-15/2010 (A/H5N8) segment 4 (HA)	2763.7	0.000000e+00	1629/1693 (96%)
EPI237594	A/mallard/Bavaria/35/2006 (A/H5) segment 4 (HA)	2761.9	0.000000e+00	1633/1700 (96%)
EPI356413	A/wild duck/Germany-BY/R2892/2009 (A/H5N3) segment 4 (HA)	2756.3	0.000000e+00	1632/1700 (96%)
EPI309084	A/spur-winged goose/Nigeria/226/2008 (A/H5N2) segment 4 (HA)	2756.3	0.000000e+00	1633/1701 (96%)
EPI309082	A/spur-winged goose/Nigeria/2/2008 (A/H5N2) segment 4 (HA)	2756.3	0.000000e+00	1632/1700 (96%)
EPI246379	A/wild duck/Germany/R2892/09 (A/H5N3) segment 4 (HA)	2756.3	0.000000e+00	1632/1700 (96%)
EPI237602	A/mallard/Bavaria/40/2006 (A/H5) segment 4 (HA)	2756.3	0.000000e+00	1633/1701 (96%)
EPI237598	A/mallard/Bavaria/38/2006 (A/H5N3) segment 4 (HA)	2756.3	0.000000e+00	1632/1700 (96%)
EPI506049	A/duck/Moscow/4182/2010 (A/H5N3) segment 4 (HA)	2750.8	0.000000e+00	1632/1701 (95%)
EPI372267	A/shoveler/Egypt/20313-NAMRU3/2003 (A/H5N2) segment 4 (HA)	2750.8	0.000000e+00	1631/1700 (95%)
EPI272807	A/mallard/PT/28003/2007 (A/H5N3) segment 4 (HA)	2745.2	0.000000e+00	1630/1700 (95%)
EPI463190	A/mallard/Sweden/101288/2009 (A/H5N3) segment 4 (HA)	2739.7	0.000000e+00	1620/1686 (96%)
EPI272805	A/mallard/PT/37369/2007 (A/H5N3) segment 4 (HA)	2739.7	0.000000e+00	1628/1699 (95%)
EPI63239	A/teal/Italy/3812/2005 (A/H5N3) segment 4 (HA)	2736.0	0.000000e+00	1629/1701 (95%)
EPI272809	A/mallard/PT/28006/2007 (A/H5N3) segment 4 (HA)	2734.2	0.000000e+00	1627/1699 (95%)
EPI164818	A/mallard/Italy/4223-2/2006 (A/H5N2) segment 4 (HA)	2734.2	0.000000e+00	1629/1701 (95%)
EPI63220	A/teal/Italy/3931-38/2005 (A/H5N2) segment 4 (HA)	2728.6	0.000000e+00	1627/1700 (95%)
EPI367589	A/mallard/Czech Republic/15008-11K/2009 (A/H5N3) segment 4 (HA)	2726.8	0.000000e+00	1630/1704 (95%)
EPI68161	A/duck/Italy/775/2004 (A/H5N3) segment 4 (HA)	2723.1	0.000000e+00	1626/1700 (95%)
EPI463185	A/mallard/Sweden/101020/2009 (A/H5N9) segment 4 (HA)	2721.2	0.000000e+00	1607/1672 (96%)
EPI237597	A/mallard/Bavaria/37/2006 (A/H5) segment 4 (HA)	2721.2	0.000000e+00	1626/1701 (95%)
EPI463187	A/mallard/Sweden/101142/2009 (A/H5N2) segment 4 (HA)	2719.4	0.000000e+00	1607/1672 (96%)
EPI463180	A/mallard/Sweden/100628/2009 (A/H5N3) segment 4 (HA)	2719.4	0.000000e+00	1606/1671 (96%)
EPI475939	A/great black-backed gull/Iceland/1110/2011 (A/H5N2) segment 4 (HA)	2717.5	0.000000e+00	1626/1701 (95%)
EPI296505	A/mallard/Sweden/74/2003 (A/H5N2) segment 4 (HA)	2717.5	0.000000e+00	1626/1701 (95%)
EPI210107	A/mallard/Italy/5582-21/2007 (A/H5N2) segment 4 (HA)	2717.5	0.000000e+00	1626/1701 (95%)
EPI463206	A/mallard/Sweden/102063/2009 (A/H5N3) segment 4 (HA)	2713.8	0.000000e+00	1606/1672 (96%)
EPI210108	A/mallard/Italy/5582-31/2007 (A/H5N2) segment 4 (HA)	2713.8	0.000000e+00	1624/1700 (95%)
EPI353349	A/duck/Germany/R1789/2008 (A/H5N3) segment 4 (HA)	2712.0	0.000000e+00	1622/1697 (95%)
EPI222868	A/teal/Crimea/97/2008 (A/H5N2) segment 4 (HA)	2710.2	0.000000e+00	1613/1683 (95%)
EPI506530	A/duck/Thailand/CU-12205C/2012 (A/H5N8) segment 4 (HA)	2706.5	0.000000e+00	1624/1701 (95%)
EPI106314	A/teal/Italy/3931/2005 (A/H5N2) segment 4 (HA)	2704.6	0.000000e+00	1614/1688 (95%)
EPI237600	A/mallard/Bavaria/39/2006 (A/H5N3) segment 4 (HA)	2700.9	0.000000e+00	1623/1701 (95%)
EPI210109	A/duck/Italy/4445/2007 (A/H5N2) segment 4 (HA)	2700.9	0.000000e+00	1623/1701 (95%)
EPI467790	A/European teal/Novosibirsk/203/2011 (A/H5N1) segment 4 (HA)	2695.4	0.000000e+00	1623/1702 (95%)
EPI237642	A/swan/Bavaria/15/2007 (A/H5N2) segment 4 (HA)	2695.4	0.000000e+00	1621/1700 (95%)
EPI227120	A/duck/France/05054a/2005 (A/H5N3) segment 4 (HA)	2695.4	0.000000e+00	1622/1701 (95%)
EPI367581	A/mallard/Czech Republic/14602-37K/2011 (A/H5N2) segment 4 (HA)	2689.8	0.000000e+00	1621/1701 (95%)
EPI447388	A/mallard/Italy/3401/2005 (A/H5N1) segment 4 (HA)	2684.3	0.000000e+00	1620/1701 (95%)
EPI447374	A/mallard/Italy/3401/2005 (A/H5N1) segment 4 (HA)	2684.3	0.000000e+00	1620/1701 (95%)
EPI244110	A/goose/Germany/R3160/09 (A/H5N2) segment 4 (HA)	2684.3	0.000000e+00	1620/1701 (95%)
EPI60367	A/mallard/Italy/3401/2005 (A/H5N1) segment 4 (HA)	2684.3	0.000000e+00	1620/1701 (95%)
EPI467794	A/European teal/Novosibirsk/261/2011 (A/H5N1) segment 4 (HA)	2678.8	0.000000e+00	1620/1702 (95%)
EPI447402	A/mallard/Italy/3401/2005 (A/H5N1) segment 4 (HA)	2678.8	0.000000e+00	1619/1701 (95%)
EPI447381	A/mallard/Italy/3401/2005 (A/H5N1) segment 4 (HA)	2678.8	0.000000e+00	1619/1701 (95%)
EPI309083	A/spur-winged goose/Nigeria/210/2008 (A/H5N2) segment 4 (HA)	2667.7	0.000000e+00	1580/1646 (95%)
EPI26823	A/mallard/Sweden/7/02 (A/H5N2) segment 4 (HA)	2667.7	0.000000e+00	1618/1702 (95%)
EPI26821	A/mallard/Sweden/2/02 (A/H5N2) segment 4 (HA)	2667.7	0.000000e+00	1618/1702 (95%)
EPI214909	A/duck/Tulcea/RO-AI-LPAI/2009 (A/H5N3) segment 4 (HA)	2664.0	0.000000e+00	1578/1644 (95%)
EPI237595	A/mallard/Bavaria/36/2006 (A/H5N3) segment 4 (HA)	2662.1	0.000000e+00	1615/1700 (95%)
EPI235186	A/mallard/Denmark/64650/03 (A/H5N7) segment 4 (HA)	2662.1	0.000000e+00	1617/1702 (95%)
EPI227126	A/duck/France/05057b/2005 (A/H5N2) segment 4 (HA)	2662.1	0.000000e+00	1616/1701 (95%)
EPI24741	A/mallard/Netherlands/3/99 (A/H5N2) segment 4 (HA)	2662.1	0.000000e+00	1616/1701 (95%)
EPI590265	A/duck/Hokkaido/W240/2014 (A/H5N3) segment 4 (HA)	2658.4	0.000000e+00	1615/1701 (94%)
EPI574244	A/mule duck/Bulgaria/25/2011 (A/H5N2) segment 4 (HA)	2656.6	0.000000e+00	1614/1700 (94%)
EPI574174	A/mule duck/Bulgaria/237/2011 (A/H5N2) segment 4 (HA)	2656.6	0.000000e+00	1614/1700 (94%)
EPI548419	A/wild bird/Mongolia/2066/2011 (A/H5N3) segment 4 (HA)	2656.6	0.000000e+00	1616/1702 (94%)
EPI538471	A/common shelduck/Mongolia/2187/2011 (A/H5N3) segment 4 (HA)	2656.6	0.000000e+00	1616/1702 (94%)
EPI354764	A/duck/Bulgaria/Shishmanzi-26/11 (A/H5N2) segment 4 (HA)	2656.6	0.000000e+00	1614/1700 (94%)
EPI354762	A/duck/Bulgaria/Shishmanzi-23/11 (A/H5N2) segment 4 (HA)	2656.6	0.000000e+00	1615/1701 (94%)
EPI590264	A/duck/Hokkaido/W280/2014 (A/H5N3) segment 4 (HA)	2652.9	0.000000e+00	1614/1701 (94%)
EPI464922	A/guinea fowl/Italy/10VIR-218-134/2010 (A/H5N2) segment 4 (HA)	2652.9	0.000000e+00	1591/1667 (95%)
EPI394683	A/mallard/Denmark/64650/2003 (A/H5N7) segment 4 (HA)	2651.1	0.000000e+00	1615/1702 (94%)
EPI354763	A/duck/Bulgaria/Shishmanzi-25/11 (A/H5N2) segment 4 (HA)	2651.1	0.000000e+00	1613/1700 (94%)
EPI26837	A/mallard/Sweden/39/02 (A/H5N3) segment 4 (HA)	2651.1	0.000000e+00	1614/1701 (94%)
EPI574269	A/mule duck/Bulgaria/209/2011 (A/H5N2) segment 4 (HA)	2640.0	0.000000e+00	1608/1695 (94%)
EPI574248	A/mule duck/Bulgaria/328/2011 (A/H5N8) segment 4 (HA)	2640.0	0.000000e+00	1610/1700 (94%)
EPI560295	A/duck/Mongolia/107/2014 (A/H5N7) segment 4 (HA)	2640.0	0.000000e+00	1612/1701 (94%)
EPI534746	A/mallard/Finland/13748/2007 (A/H5N2) segment 4 (HA)	2640.0	0.000000e+00	1611/1700 (94%)
EPI485695	A/mallard/Sweden/7/2002 (A/H5N2) segment 4 (HA)	2640.0	0.000000e+00	1603/1687 (95%)
EPI413881	A/ostrich/South Africa/AI2114/2011 (A/H5N2) segment 4 (HA)	2640.0	0.000000e+00	1612/1702 (94%)
EPI375595	A/pheasant/Ireland/PV12-010728/12 (A/H5N2) segment 4 (HA)	2640.0	0.000000e+00	1615/1704 (94%)
EPI99870	A/duck/Denmark/65047/04 (A/H5N2) segment 4 (HA)	2640.0	0.000000e+00	1612/1701 (94%)
EPI567104	A/duck/Mongolia/256/2014 (A/H5N2) segment 4 (HA)	2634.4	0.000000e+00	1611/1701 (94%)
EPI567103	A/duck/Mongolia/211/2014 (A/H5N7) segment 4 (HA)	2634.4	0.000000e+00	1611/1701 (94%)
EPI467792	A/European teal/Novosibirsk/239/2011 (A/H5N1) segment 4 (HA)	2634.4	0.000000e+00	1614/1704 (94%)
EPI413888	A/ostrich/South Africa/AI2214/2011 (A/H5N2) segment 4 (HA)	2634.4	0.000000e+00	1611/1702 (94%)
EPI267601	A/mallard/Netherlands/3/1999 (A/H5N2) segment 4 (HA)	2634.4	0.000000e+00	1601/1686 (94%)
EPI513421	A/mallard/Sweden/101782/2009 (A/H0) segment 4 (HA)	2628.9	0.000000e+00	1609/1700 (94%)
EPI590281	A/duck/Hokkaido/166/2014 (A/H5N2) segment 4 (HA)	2625.2	0.000000e+00	1611/1703 (94%)
EPI590249	A/duck/Hokkaido/WZ20/2014 (A/H5N2) segment 4 (HA)	2625.2	0.000000e+00	1610/1702 (94%)
EPI560294	A/duck/Hokkaido/WZ20/2014 (A/H5N2) segment 4 (HA)	2625.2	0.000000e+00	1610/1702 (94%)

niman · January 15, 2016

Descriptions

Segment-ID	Name	Score	E-Value	Identity
EPI687189	A/chicken/Scotland/532/2016 (A/H5N1) segment 6 (NA)	2597.5	0.000000e+00	1410/1410 (100%)
EPI617857	A/mallard/Republic of Georgia/4/2012 (A/H1N1) segment 6 (NA)	2436.9	0.000000e+00	1379/1410 (97%)
EPI682989	A/wild bird/Wuhan/WHHN16/2014 (A/H1N1) segment 6 (NA)	2414.7	0.000000e+00	1376/1411 (97%)
EPI682990	A/wild bird/Wuhan/WHHN58/2014 (A/H1N1) segment 6 (NA)	2409.2	0.000000e+00	1375/1411 (97%)
EPI617892	A/mallard/Republic of Georgia/1/2012 (A/H1N1) segment 6 (NA)	2375.9	0.000000e+00	1368/1410 (97%)
EPI485316	A/common goldeneye/Mongolia/1216/2010 (A/H1N1) segment 6 (NA)	2348.2	0.000000e+00	1364/1411 (96%)
EPI485327	A/tufted duck/Mongolia/1409/2010 (A/H1N1) segment 6 (NA)	2342.7	0.000000e+00	1363/1411 (96%)
EPI485314	A/common goldeneye/Mongolia/1238/2010 (A/H1N1) segment 6 (NA)	2337.1	0.000000e+00	1362/1411 (96%)
EPI354438	A/chicken/Pakistan/NARC-16945/2010 (A/H3N1) segment 6 (NA)	2331.6	0.000000e+00	1360/1410 (96%)
EPI485350	A/ruddy shelduck/Mongolia/921C2/2009 (A/H7N1) segment 6 (NA)	2315.0	0.000000e+00	1357/1410 (96%)
EPI270064	A/aquatic bird/India/NIV-17095/2007 (A/H11N1) segment 6 (NA)	2303.9	0.000000e+00	1355/1410 (96%)
EPI618822	A/mallard/Sweden/104746/2009 (A/H10N1) segment 6 (NA)	2298.4	0.000000e+00	1355/1411 (96%)
EPI618811	A/mallard/Sweden/102260/2009 (A/H10N1) segment 6 (NA)	2298.4	0.000000e+00	1355/1411 (96%)
EPI618797	A/mallard/Sweden/102087/2009 (A/H10N1) segment 6 (NA)	2298.4	0.000000e+00	1355/1411 (96%)
EPI618724	A/mallard/Sweden/105486/2009 (A/H10N1) segment 6 (NA)	2298.4	0.000000e+00	1355/1411 (96%)
EPI618698	A/mallard/Sweden/105404/2009 (A/H10N1) segment 6 (NA)	2298.4	0.000000e+00	1355/1411 (96%)
EPI618584	A/mallard/Sweden/105565/2009 (A/H10N1) segment 6 (NA)	2298.4	0.000000e+00	1355/1411 (96%)
EPI617126	A/mallard/Sweden/102214/2009 (A/H10N1) segment 6 (NA)	2298.4	0.000000e+00	1355/1411 (96%)
EPI463435	A/mallard/Sweden/105522/2009 (A/H10N1) segment 6 (NA)	2298.4	0.000000e+00	1355/1411 (96%)
EPI618837	A/mallard/Sweden/105254/2009 (A/H10N1) segment 6 (NA)	2292.8	0.000000e+00	1354/1411 (95%)
EPI618830	A/mallard/Sweden/105186/2009 (A/H10N1) segment 6 (NA)	2292.8	0.000000e+00	1354/1411 (95%)
EPI618752	A/mallard/Sweden/105364/2009 (A/H10N1) segment 6 (NA)	2292.8	0.000000e+00	1354/1411 (95%)
EPI618745	A/mallard/Sweden/105536/2009 (A/H10N1) segment 6 (NA)	2292.8	0.000000e+00	1354/1411 (95%)
EPI618731	A/mallard/Sweden/105501/2009 (A/H10N1) segment 6 (NA)	2292.8	0.000000e+00	1354/1411 (95%)
EPI618717	A/mallard/Sweden/105474/2009 (A/H10N1) segment 6 (NA)	2292.8	0.000000e+00	1354/1411 (95%)
EPI618711	A/mallard/Sweden/105465/2009 (A/H10N1) segment 6 (NA)	2292.8	0.000000e+00	1354/1411 (95%)
EPI618686	A/mallard/Sweden/105402/2009 (A/H10N1) segment 6 (NA)	2292.8	0.000000e+00	1354/1411 (95%)
EPI618684	A/mallard/Sweden/105259/2009 (A/H10N1) segment 6 (NA)	2292.8	0.000000e+00	1354/1411 (95%)
EPI618673	A/mallard/Sweden/105365/2009 (A/H10N1) segment 6 (NA)	2292.8	0.000000e+00	1354/1411 (95%)
EPI618597	A/mallard/Sweden/107688/2009 (A/H10N1) segment 6 (NA)	2292.8	0.000000e+00	1354/1411 (95%)
EPI463395	A/mallard/Sweden/104803/2009 (A/H1N1) segment 6 (NA)	2292.8	0.000000e+00	1354/1411 (95%)
EPI618699	A/mallard/Sweden/105323/2009 (A/H10N1) segment 6 (NA)	2287.3	0.000000e+00	1353/1411 (95%)
EPI485321	A/mallard /Mongolia/1551/2010 (A/H3N1) segment 6 (NA)	2281.7	0.000000e+00	1351/1410 (95%)
EPI485358	A/ruddy shelduck/Mongolia/1209/2010 (A/H7N1) segment 6 (NA)	2276.2	0.000000e+00	1351/1411 (95%)
EPI485317	A/ruddy shelduck/Mongolia/1189/2010 (A/H7N1) segment 6 (NA)	2276.2	0.000000e+00	1351/1411 (95%)
EPI485313	A/common goldeneye/Mongolia/1271/2010 (A/H7N1) segment 6 (NA)	2276.2	0.000000e+00	1351/1411 (95%)
EPI361731	A/lesser whistling-duck/Thailand/CU-W3941/2010 (A/H12N1) segment 6 (NA)	2268.8	0.000000e+00	1343/1401 (95%)
EPI361723	A/watercock/Thailand/CU-W3699/2009 (A/H12N1) segment 6 (NA)	2263.3	0.000000e+00	1346/1407 (95%)
EPI339177	A/domestic goose/Germany-MV/R3298/2009 (A/H6N1) segment 6 (NA)	2263.3	0.000000e+00	1349/1411 (95%)
EPI244099	A/goose/Germany/R3298/09 (A/H6N1) segment 6 (NA)	2263.3	0.000000e+00	1349/1411 (95%)
EPI337015	A/duck/Zhejiang/2245/2011 (A/H5N1) segment 6 (NA)	2259.6	0.000000e+00	1347/1410 (95%)
EPI168546	A/duck/Mongolia/540/2001 (A/H1N1) segment 6 (NA)	2254.0	0.000000e+00	1346/1410 (95%)
EPI168544	A/duck/Mongolia/116/2002 (A/H1N1) segment 6 (NA)	2254.0	0.000000e+00	1347/1411 (95%)
EPI372465	A/teal/Egypt/01351-NAMRU3/2007 (A/H1N1) segment 6 (NA)	2252.2	0.000000e+00	1347/1411 (95%)
EPI316304	A/chicken/Netherlands/11004875/11 (A/H7N1) segment 6 (NA)	2252.2	0.000000e+00	1328/1383 (96%)
EPI168545	A/duck/Mongolia/253/2003 (A/H1N1) segment 6 (NA)	2248.5	0.000000e+00	1346/1411 (95%)
EPI361751	A/lesser whistling-duck/Thailand/CU-W3947/2010 (A/H12N1) segment 6 (NA)	2246.6	0.000000e+00	1337/1398 (95%)
EPI361743	A/lesser whistling-duck/Thailand/CU-W3946/2010 (A/H12N1) segment 6 (NA)	2246.6	0.000000e+00	1339/1401 (95%)
EPI268145	A/mallard/Jiangxi/227/2003 (A/H6N1) segment 6 (NA)	2243.0	0.000000e+00	1345/1411 (95%)
EPI243275	A/R(duck/Mongolia/54/01-duck/Mongolia/47/01) (A/H5N1) segment 6 (NA)	2243.0	0.000000e+00	1344/1410 (95%)
EPI3419	A/duck/Mongolia/47/01 (A/H7N1) segment 6 (NA)	2243.0	0.000000e+00	1344/1410 (95%)
EPI1654	A/duck/Hokkaido/Vac-1/04 (A/H5N1) segment 6 (NA)	2243.0	0.000000e+00	1344/1410 (95%)
EPI268141	A/duck/Hunan/177/2005 (A/H6N1) segment 6 (NA)	2231.9	0.000000e+00	1343/1411 (95%)
EPI132374	A/duck/Eastern China/253/2003 (A/H3N1) segment 6 (NA)	2231.9	0.000000e+00	1344/1412 (95%)
EPI132364	A/duck/Eastern China/103/2003 (A/H1N1) segment 6 (NA)	2231.9	0.000000e+00	1343/1411 (95%)
EPI618108	A/black-headed gull/Republic of Georgia/1/2010 (A/H11N1) segment 6 (NA)	2226.3	0.000000e+00	1342/1411 (95%)
EPI364203	A/duck/Guizhou/879/2006 (A/H6N1) segment 6 (NA)	2226.3	0.000000e+00	1341/1410 (95%)
EPI168547	A/duck/Mongolia/610/2002 (A/H1N1) segment 6 (NA)	2226.3	0.000000e+00	1341/1410 (95%)
EPI132370	A/duck/Eastern China/243/2003 (A/H3N1) segment 6 (NA)	2226.3	0.000000e+00	1343/1412 (95%)
EPI132312	A/duck/Eastern China/213/2003 (A/H3N1) segment 6 (NA)	2226.3	0.000000e+00	1343/1412 (95%)
EPI132302	A/duck/Eastern China/01/2002 (A/H3N1) segment 6 (NA)	2226.3	0.000000e+00	1343/1412 (95%)
EPI360056	A/duck/Suphanburi/AI157/2005 (A/H6N1) segment 6 (NA)	2224.5	0.000000e+00	1342/1411 (95%)
EPI363529	A/duck/Guizhou/1426/2006 (A/H6N1) segment 6 (NA)	2220.8	0.000000e+00	1340/1410 (95%)
EPI181652	A/duck/Chiba/884/2004 (A/H3N1) segment 6 (NA)	2220.8	0.000000e+00	1341/1411 (95%)
EPI169705	A/duck/Mongolia/867/2002 (A/H7N1) segment 6 (NA)	2220.8	0.000000e+00	1340/1410 (95%)
EPI102197	A/duck/Taiwan/A68/03 (A/H6N1) segment 6 (NA)	2220.8	0.000000e+00	1341/1411 (95%)
EPI132398	A/duck/Eastern China/231/2003 (A/H3N1) segment 6 (NA)	2215.3	0.000000e+00	1341/1412 (94%)
EPI132376	A/duck/Eastern China/267/2003 (A/H3N1) segment 6 (NA)	2215.3	0.000000e+00	1341/1412 (94%)
EPI132334	A/duck/Eastern China/262/2003 (A/H3N1) segment 6 (NA)	2215.3	0.000000e+00	1341/1412 (94%)
EPI467795	A/European teal/Novosibirsk/261/2011 (A/H5N1) segment 6 (NA)	2213.4	0.000000e+00	1341/1412 (94%)
EPI467791	A/European teal/Novosibirsk/203/2011 (A/H5N1) segment 6 (NA)	2213.4	0.000000e+00	1341/1412 (94%)
EPI356839	A/chicken/England/1415-51184/2010 (A/H9N1) segment 6 (NA)	2209.7	0.000000e+00	1339/1411 (94%)
EPI268143	A/mallard/Jiangxi/7787/2003 (A/H6N1) segment 6 (NA)	2209.7	0.000000e+00	1339/1411 (94%)
EPI467793	A/European teal/Novosibirsk/239/2011 (A/H5N1) segment 6 (NA)	2207.9	0.000000e+00	1340/1412 (94%)
EPI417949	A/duck/Hokkaido/W26/2012 (A/H12N1) segment 6 (NA)	2204.2	0.000000e+00	1339/1412 (94%)
EPI268140	A/mallard/Jiangxi/10071/2005 (A/H6N1) segment 6 (NA)	2204.2	0.000000e+00	1338/1411 (94%)
EPI181651	A/duck/Tsukuba/718/2005 (A/H1N1) segment 6 (NA)	2204.2	0.000000e+00	1338/1411 (94%)
EPI132372	A/duck/Eastern China/252/2003 (A/H3N1) segment 6 (NA)	2204.2	0.000000e+00	1340/1413 (94%)
EPI132332	A/duck/Eastern China/233/2003 (A/H3N1) segment 6 (NA)	2204.2	0.000000e+00	1339/1412 (94%)
EPI268144	A/mallard/Jiangxi/6845/2003 (A/H6N1) segment 6 (NA)	2202.3	0.000000e+00	1339/1412 (94%)
EPI132368	A/duck/Eastern China/152/2003 (A/H1N1) segment 6 (NA)	2200.5	0.000000e+00	1340/1414 (94%)
EPI645333	A/duck/Thailand/CU-13011C/2013 (A/H0) segment 6 (NA)	2198.6	0.000000e+00	1337/1411 (94%)
EPI181650	A/duck/Tsukuba/67/2005 (A/H1N1) segment 6 (NA)	2198.6	0.000000e+00	1337/1411 (94%)
EPI168540	A/duck/Hokkaido/W73/2007 (A/H1N1) segment 6 (NA)	2198.6	0.000000e+00	1337/1411 (94%)
EPI132304	A/duck/Eastern China/341/2003 (A/H3N1) segment 6 (NA)	2198.6	0.000000e+00	1339/1413 (94%)
EPI161648	A/duck/Hokkaido/143/03 (A/H7N1) segment 6 (NA)	2196.8	0.000000e+00	1338/1412 (94%)
EPI345776	A/duck/Eastern China/34/2005 (A/H6N1) segment 6 (NA)	2191.2	0.000000e+00	1337/1412 (94%)
EPI268139	A/mallard/Jiangxi/10668/2005 (A/H6N1) segment 6 (NA)	2182.0	0.000000e+00	1334/1411 (94%)
EPI268138	A/mallard/Jiangxi/13228/2005 (A/H6N1) segment 6 (NA)	2176.5	0.000000e+00	1333/1411 (94%)
EPI276115	A/pintail/Miyagi/1472/2008 (A/H1N1) segment 6 (NA)	2174.6	0.000000e+00	1333/1411 (94%)
EPI439196	A/mallard/Republic of Georgia/1/2010 (A/H10N1) segment 6 (NA)	2170.9	0.000000e+00	1283/1337 (95%)
EPI13887	A/duck/France/05066b/2005 (A/H5N1) segment 6 (NA)	2170.9	0.000000e+00	1332/1411 (94%)
EPI326931	A/duck/Korea/GJ74/2007 (A/H3N1) segment 6 (NA)	2169.1	0.000000e+00	1332/1411 (94%)
EPI231219	A/spot-billed duck/Korea/625/2008 (A/H6N1) segment 6 (NA)	2169.1	0.000000e+00	1332/1411 (94%)
EPI617943	A/black-headed gull/Republic of Georgia/2/2011 (A/H9N1) segment 6 (NA)	2165.4	0.000000e+00	1332/1412 (94%)
EPI372362	A/shoveler/Egypt/14879-NAMRU3/2006 (A/H7N1) segment 6 (NA)	2165.4	0.000000e+00	1330/1410 (94%)
EPI276111	A/pintail/Aomori/794/2008 (A/H1N1) segment 6 (NA)	2163.5	0.000000e+00	1331/1411 (94%)
EPI168538	A/duck/Hokkaido/83/2004 (A/H1N1) segment 6 (NA)	2161.7	0.000000e+00	1330/1411 (94%)
EPI276107	A/pintail/Aomori/422/2007 (A/H1N1) segment 6 (NA)	2159.9	0.000000e+00	1330/1411 (94%)
EPI168525	A/mute swan/Aktau/1460/2006 (A/H5N1) segment 6 (NA)	2159.9	0.000000e+00	1329/1410 (94%)

niman · January 15, 2016

Descriptions

Segment-ID	Name	Score	E-Value	Identity
EPI687190	A/chicken/Scotland/532/2016 (A/H5N1) segment 7 (MP)	1814.5	0.000000e+00	982/982 (100%)
EPI513559	A/mallard/Sweden/101180/2009 (A/H4N6) segment 7 (MP)	1775.8	0.000000e+00	975/982 (99%)
EPI513552	A/mallard/Sweden/101081/2009 (A/H4N6) segment 7 (MP)	1775.8	0.000000e+00	975/982 (99%)
EPI513538	A/mallard/Sweden/100881/2009 (A/H4N6) segment 7 (MP)	1775.8	0.000000e+00	975/982 (99%)
EPI513499	A/mallard/Sweden/101431/2009 (A/H4N6) segment 7 (MP)	1775.8	0.000000e+00	975/982 (99%)
EPI513485	A/mallard/Sweden/101298/2009 (A/H4N6) segment 7 (MP)	1775.8	0.000000e+00	975/982 (99%)
EPI248496	A/mallard/Germany-RP/R193/09 (A/H1N1) segment 7 (MP)	1775.8	0.000000e+00	975/982 (99%)
EPI439562	A/avian/Israel/824/2005 (A/H10N2) segment 7 (MP)	1770.2	0.000000e+00	974/982 (99%)
EPI367576	A/mallard/Czech Republic/14333-1K/2011 (A/H3N8) segment 7 (MP)	1768.4	0.000000e+00	973/981 (99%)
EPI619262	A/mallard/Sweden/60041/2007 (A/H8N2) segment 7 (MP)	1764.7	0.000000e+00	973/982 (99%)
EPI377995	A/common teal/Netherlands/2/2008 (A/H2N3) segment 7 (MP)	1764.7	0.000000e+00	973/982 (99%)
EPI372421	A/teal/Egypt/01207-NAMRU3/2007 (A/H10N7) segment 7 (MP)	1764.7	0.000000e+00	973/982 (99%)
EPI372413	A/shoveler/Egypt/00241-NAMRU3/2007 (A/H7N3) segment 7 (MP)	1764.7	0.000000e+00	973/982 (99%)
EPI372397	A/shoveler/Egypt/01198-NAMRU3/2007 (A/H10N7) segment 7 (MP)	1764.7	0.000000e+00	973/982 (99%)
EPI372350	A/teal/Egypt/09888-NAMRU3/2005 (A/H4N6) segment 7 (MP)	1764.7	0.000000e+00	973/982 (99%)
EPI398925	A/common gull/Norway/10_1602/2009 (A/H6N8) segment 7 (MP)	1762.8	0.000000e+00	972/981 (99%)
EPI220565	A/mallard/Czech Republic/15307-17/2008 (A/H0) segment 7 (MP)	1762.8	0.000000e+00	972/981 (99%)
EPI619097	A/mallard/Sweden/68537/2007 (A/H0) segment 7 (MP)	1759.1	0.000000e+00	972/982 (98%)
EPI618488	A/mallard/Sweden/101589/2009 (A/H11N9) segment 7 (MP)	1759.1	0.000000e+00	972/982 (98%)
EPI514674	A/mallard/Sweden/7925/2005 (A/H4N6) segment 7 (MP)	1759.1	0.000000e+00	972/982 (98%)
EPI514029	A/mallard/Sweden/68575/2007 (A/H4N6) segment 7 (MP)	1759.1	0.000000e+00	972/982 (98%)
EPI513814	A/mallard/Sweden/79445/2008 (A/H4N6) segment 7 (MP)	1759.1	0.000000e+00	972/982 (98%)
EPI513583	A/mallard/Sweden/80415/2008 (A/H0) segment 7 (MP)	1759.1	0.000000e+00	972/982 (98%)
EPI513567	A/mallard/Sweden/80348/2008 (A/H0) segment 7 (MP)	1759.1	0.000000e+00	972/982 (98%)
EPI476117	A/pink-footed goose/Iceland/0987/2011 (A/H6N8) segment 7 (MP)	1759.1	0.000000e+00	972/982 (98%)
EPI476111	A/greylag goose/Iceland/0980/2011 (A/H6N8) segment 7 (MP)	1759.1	0.000000e+00	972/982 (98%)
EPI476097	A/greylag goose/Iceland/0961/2011 (A/H6N8) segment 7 (MP)	1759.1	0.000000e+00	972/982 (98%)
EPI476067	A/greylag goose/Iceland/0926/2011 (A/H6N8) segment 7 (MP)	1759.1	0.000000e+00	972/982 (98%)
EPI476051	A/greylag goose/Iceland/0921/2011 (A/H6N8) segment 7 (MP)	1759.1	0.000000e+00	972/982 (98%)
EPI476044	A/greylag goose/Iceland/0911/2011 (A/H6N8) segment 7 (MP)	1759.1	0.000000e+00	972/982 (98%)
EPI476031	A/greylag goose/Iceland/1474/2011 (A/H6N8) segment 7 (MP)	1759.1	0.000000e+00	972/982 (98%)
EPI378011	A/mallard/Netherlands/12/2008 (A/H2N3) segment 7 (MP)	1759.1	0.000000e+00	972/982 (98%)
EPI372461	A/teal/Egypt/01351-NAMRU3/2007 (A/H1N1) segment 7 (MP)	1759.1	0.000000e+00	972/982 (98%)
EPI363933	A/duck/Guizhou/1560/2007 (A/H6N8) segment 7 (MP)	1759.1	0.000000e+00	972/982 (98%)
EPI296553	A/dunlin/Sweden/1/2005 (A/H4N6) segment 7 (MP)	1759.1	0.000000e+00	972/982 (98%)
EPI190341	A/mallard/Netherlands/1/2006 (A/H8N4) segment 7 (MP)	1759.1	0.000000e+00	972/982 (98%)
EPI182146	A/Bewick's swan/Netherlands/5/2007 (A/H9N2) segment 7 (MP)	1759.1	0.000000e+00	972/982 (98%)
EPI182106	A/mallard/Netherlands/11/2007 (A/H6N5) segment 7 (MP)	1759.1	0.000000e+00	972/982 (98%)
EPI284616	A/swan/Slovenia/53/2009 (A/H7N7) segment 7 (MP)	1757.3	0.000000e+00	971/981 (98%)
EPI682981	A/duck/Wuhan/WHYF05/2014 (A/H9N2) segment 7 (MP)	1753.6	0.000000e+00	971/982 (98%)
EPI629352	A/chicken/NL-Barneveld/15004745-006-010/2015 (A/H7N7) segment 7 (MP)	1753.6	0.000000e+00	971/982 (98%)
EPI629342	A/Chicken/NL-Barneveld/15004745-001-005/2015 (A/H7N7) segment 7 (MP)	1753.6	0.000000e+00	971/982 (98%)
EPI476104	A/greylag goose/Iceland/0976/2011 (A/H6N8) segment 7 (MP)	1753.6	0.000000e+00	971/982 (98%)
EPI476037	A/greylag goose/Iceland/1482/2011 (A/H6N8) segment 7 (MP)	1753.6	0.000000e+00	971/982 (98%)
EPI377987	A/mallard/Netherlands/58/2008 (A/H2N3) segment 7 (MP)	1753.6	0.000000e+00	971/982 (98%)
EPI377979	A/mallard/Netherlands/37/2008 (A/H2N3) segment 7 (MP)	1753.6	0.000000e+00	971/982 (98%)
EPI372437	A/shoveler/Egypt/00006-NAMRU3/2007 (A/H10N1) segment 7 (MP)	1753.6	0.000000e+00	971/982 (98%)
EPI372429	A/shoveler/Egypt/00004-NAMRU3/2007 (A/H10N9) segment 7 (MP)	1753.6	0.000000e+00	971/982 (98%)
EPI372405	A/shoveler/Egypt/00215-NAMRU3/2007 (A/H7N9) segment 7 (MP)	1753.6	0.000000e+00	971/982 (98%)
EPI296609	A/mallard/Sweden/90/2005 (A/H11N9) segment 7 (MP)	1753.6	0.000000e+00	971/982 (98%)
EPI182050	A/turnstone/Netherlands/1/2007 (A/H3N8) segment 7 (MP)	1753.6	0.000000e+00	971/982 (98%)
EPI181962	A/mallard/Netherlands/2/2005 (A/H4N2) segment 7 (MP)	1753.6	0.000000e+00	971/982 (98%)
EPI168526	A/mute swan/Aktau/1460/2006 (A/H5N1) segment 7 (MP)	1753.6	0.000000e+00	971/982 (98%)
EPI367592	A/mallard/Czech Republic/15008-11K/2009 (A/H5N3) segment 7 (MP)	1751.7	0.000000e+00	970/981 (98%)
EPI619206	A/mallard/Sweden/4486/2004 (A/H8N4) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI619147	A/mallard/Sweden/50055/2006 (A/H8N4) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI618781	A/mallard/Sweden/93475/2009 (A/H10N6) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI618547	A/mallard/Sweden/58705/2006 (A/H5N2) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI617979	A/mallard/Republic of Georgia/2/2010 (A/H7N7) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI617769	A/mallard/Republic of Georgia/15/2011 (A/H10N7) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI617749	A/mallard/Republic of Georgia/2/2012 (A/H2N3) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI586235	A/muskrat/Russia/63/2014 (A/H2N2) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI514272	A/mallard/Sweden/52334/2006 (A/H4N6) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI514177	A/mallard/Sweden/58463/2006 (A/H0) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI513821	A/mallard/Sweden/79956/2008 (A/H0) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI513531	A/mallard/Sweden/100049/2009 (A/H4N6) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI513524	A/mallard/Sweden/99967/2009 (A/H4N6) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI484290	A/chicken/Italy/13VIR4527-11/2013 (A/H7N7) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI464925	A/chicken/Italy/11VIR-7548/2011 (A/H5N2) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI439568	A/avian/Israel/320/2001 (A/H6N2) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI372334	A/shoveler/Egypt/09781-NAMRU3/2004 (A/H10N7) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI372318	A/shoveler/Egypt/09864-NAMRU3/2004 (A/H7N7) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI372310	A/shoveler/Egypt/09782-NAMRU3/2004 (A/H10N7) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI296633	A/northern shoveler/Netherlands/1/2006 (A/H8N4) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI224484	A/mallard/Netherlands/2/2005 (A/H5N2) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI398949	A/mallard/Norway/10_779/2009 (A/H3N8) segment 7 (MP)	1746.2	0.000000e+00	969/981 (98%)
EPI387835	A/wild bird/Korea/A323/2009 (A/H10N1) segment 7 (MP)	1746.2	0.000000e+00	969/981 (98%)
EPI316771	A/mallard/Czech Republic/13579-84K/2010 (A/H4N6) segment 7 (MP)	1746.2	0.000000e+00	969/981 (98%)
EPI222177	A/mallard/Czech Republic/14884-34/2007 (A/H9N2) segment 7 (MP)	1746.2	0.000000e+00	969/981 (98%)
EPI222176	A/mallard/Czech Republic/14760-3/2007 (A/H4) segment 7 (MP)	1746.2	0.000000e+00	969/981 (98%)
EPI439566	A/avian/Israel/289/2001 (A/H6N2) segment 7 (MP)	1744.4	0.000000e+00	969/982 (98%)
EPI619241	A/mallard/Sweden/5932/2005 (A/H10N7) segment 7 (MP)	1742.5	0.000000e+00	969/982 (98%)
EPI619214	A/mallard/Sweden/4737/2004 (A/H0) segment 7 (MP)	1742.5	0.000000e+00	969/982 (98%)
EPI618899	A/mallard/Sweden/6148/2005 (A/H10N7) segment 7 (MP)	1742.5	0.000000e+00	969/982 (98%)
EPI618886	A/mallard/Sweden/5933/2005 (A/H0) segment 7 (MP)	1742.5	0.000000e+00	969/982 (98%)
EPI618870	A/mallard/Sweden/5824/2005 (A/H10N7) segment 7 (MP)	1742.5	0.000000e+00	969/982 (98%)
EPI560343	A/Italy/3/2013 (A/H7N7) segment 7 (MP)	1742.5	0.000000e+00	969/982 (98%)
EPI559668	A/harbour seal/Germany/1/2014 (A/H10N7) segment 7 (MP)	1742.5	0.000000e+00	969/982 (98%)
EPI544354	A/harbour seal/Germany/1/2014 (A/H10N7) segment 7 (MP)	1742.5	0.000000e+00	969/982 (98%)
EPI533779	A/Caspian seal/Russia/T1/2012 (A/H4N6) segment 7 (MP)	1742.5	0.000000e+00	969/982 (98%)
EPI533773	A/Caspian seal/Russia/1884/2002 (A/H4N6) segment 7 (MP)	1742.5	0.000000e+00	969/982 (98%)
EPI514991	A/mallard/Sweden/51880/2006 (A/H0) segment 7 (MP)	1742.5	0.000000e+00	969/982 (98%)
EPI514946	A/mallard/Sweden/52405/2006 (A/H0) segment 7 (MP)	1742.5	0.000000e+00	969/982 (98%)
EPI514621	A/mallard/Sweden/51284/2006 (A/H4N6) segment 7 (MP)	1742.5	0.000000e+00	969/982 (98%)
EPI514613	A/mallard/Sweden/51198/2006 (A/H4N6) segment 7 (MP)	1742.5	0.000000e+00	969/982 (98%)
EPI514578	A/mallard/Sweden/51586/2006 (A/H4N6) segment 7 (MP)	1742.5	0.000000e+00	969/982 (98%)
EPI514570	A/mallard/Sweden/51576/2006 (A/H4N6) segment 7 (MP)	1742.5	0.000000e+00	969/982 (98%)
EPI514563	A/mallard/Sweden/51541/2006 (A/H4N6) segment 7 (MP)	1742.5	0.000000e+00	969/982 (98%)
EPI514556	A/mallard/Sweden/51539/2006 (A/H4N6) segment 7 (MP)	1742.5	0.000000e+00	969/982 (98%)
EPI514549	A/mallard/Sweden/51532/2006 (A/H4N6) segment 7 (MP)	1742.5	0.000000e+00	969/982 (98%)

niman · January 15, 2016

Descriptions

Segment-ID	Name	Score	E-Value	Identity
EPI687184	A/chicken/Scotland/532/2016 (A/H5N1) segment 1 (PB2)	4189.3	0.000000e+00	2270/2270 (100%)
EPI560338	A/Italy/3/2013 (A/H7N7) segment 1 (PB2)	3995.4	0.000000e+00	2234/2270 (98%)
EPI618045	A/mallard/Republic of Georgia/12/2011 (A/H10N4) segment 1 (PB2)	3940.0	0.000000e+00	2224/2270 (97%)
EPI617974	A/common Teal/Republic of Georgia/1/2011 (A/H3N8) segment 1 (PB2)	3923.4	0.000000e+00	2222/2271 (97%)
EPI341793	A/mallard/France/090360/2009 (A/H9N2) segment 1 (PB2)	3912.3	0.000000e+00	2219/2270 (97%)
EPI617882	A/mallard/Republic of Georgia/13/2011 (A/H6N2) segment 1 (PB2)	3906.8	0.000000e+00	2218/2270 (97%)
EPI484292	A/chicken/Italy/13VIR4527-11/2013 (A/H7N7) segment 1 (PB2)	3868.0	0.000000e+00	2167/2204 (98%)
EPI174669	A/chicken/Hubei/3002/2007 (A/H5N1) segment 1 (PB2)	3862.5	0.000000e+00	2210/2270 (97%)
EPI174667	A/chicken/Hubei/2856/2007 (A/H5N1) segment 1 (PB2)	3862.5	0.000000e+00	2210/2270 (97%)
EPI174670	A/chicken/Hunan/3157/2006 (A/H5N1) segment 1 (PB2)	3856.9	0.000000e+00	2209/2270 (97%)
EPI174657	A/duck/Hunan/689/2006 (A/H5N1) segment 1 (PB2)	3856.9	0.000000e+00	2210/2271 (97%)
EPI221999	A/environment/Hunan/1-8/2007 (A/H5N1) segment 1 (PB2)	3851.4	0.000000e+00	2209/2271 (97%)
EPI174668	A/duck/Hubei/2911/2007 (A/H5N1) segment 1 (PB2)	3851.4	0.000000e+00	2208/2270 (97%)
EPI174665	A/duck/Hunan/1964/2007 (A/H5N1) segment 1 (PB2)	3851.4	0.000000e+00	2208/2270 (97%)
EPI222147	A/lesser kestrel/Heilongjiang/194/2007 (A/H5N1) segment 1 (PB2)	3845.8	0.000000e+00	2207/2270 (97%)
EPI174660	A/duck/Henan/1647/2006 (A/H5N1) segment 1 (PB2)	3840.3	0.000000e+00	2206/2270 (97%)
EPI262682	A/aquatic bird/Korea/w120/2006 (A/H5N2) segment 1 (PB2)	3834.8	0.000000e+00	2205/2270 (97%)
EPI262680	A/aquatic bird/Korea/w113/2006 (A/H5N2) segment 1 (PB2)	3834.8	0.000000e+00	2205/2270 (97%)
EPI222581	A/scaly-breasted munia/Hong Kong/45/2007 (A/H5N1) segment 1 (PB2)	3831.1	0.000000e+00	2201/2265 (97%)
EPI262683	A/aquatic bird/Korea/w121/2006 (A/H5N2) segment 1 (PB2)	3829.2	0.000000e+00	2204/2270 (97%)
EPI174662	A/duck/Henan/1652/2006 (A/H5N1) segment 1 (PB2)	3829.2	0.000000e+00	2204/2270 (97%)
EPI173585	A/swine/Korea/C12/2008 (A/H5N2) segment 1 (PB2)	3829.2	0.000000e+00	2204/2270 (97%)
EPI262681	A/aquatic bird/Korea/w114/2006 (A/H5N2) segment 1 (PB2)	3823.7	0.000000e+00	2203/2270 (97%)
EPI167950	A/long-tailed shrike/Hong Kong/2762/2007 (A/H5N1) segment 1 (PB2)	3821.8	0.000000e+00	2194/2257 (97%)
EPI220527	A/environment/Hunan/6-69/2008 (A/H5N1) segment 1 (PB2)	3818.1	0.000000e+00	2203/2271 (97%)
EPI167855	A/crested goshawk/Hong Kong/458/2007 (A/H5N1) segment 1 (PB2)	3760.9	0.000000e+00	2160/2222 (97%)
EPI316548	A/spot-billed duck/Korea/KNU SYG06/2006 (A/H5N3) segment 1 (PB2)	3729.5	0.000000e+00	2186/2270 (96%)
EPI401812	A/green-winged teal/Xianghai/430/2011 (A/H5N2) segment 1 (PB2)	3724.0	0.000000e+00	2185/2270 (96%)
EPI534805	A/duck/Zhejiang/D18/2013 (A/H3N3) segment 1 (PB2)	3707.3	0.000000e+00	2182/2270 (96%)
EPI534804	A/duck/Zhejiang/D17/2013 (A/H3N3) segment 1 (PB2)	3707.3	0.000000e+00	2182/2270 (96%)
EPI534803	A/duck/Zhejiang/D16/2013 (A/H3N3) segment 1 (PB2)	3707.3	0.000000e+00	2182/2270 (96%)
EPI534800	A/duck/Zhejiang/D13/2013 (A/H3N2) segment 1 (PB2)	3707.3	0.000000e+00	2182/2270 (96%)
EPI534799	A/duck/Zhejiang/D11/2013 (A/H3N2) segment 1 (PB2)	3707.3	0.000000e+00	2182/2270 (96%)
EPI469171	A/wild duck/Guangdong/520/2001 (A/H1N9) segment 1 (PB2)	3707.3	0.000000e+00	2182/2270 (96%)
EPI99874	A/duck/Denmark/65047/04 (A/H5N2) segment 1 (PB2)	3707.3	0.000000e+00	2182/2270 (96%)
EPI619190	A/mallard/Sweden/2990/2003 (A/H8N4) segment 1 (PB2)	3701.8	0.000000e+00	2181/2270 (96%)
EPI485923	A/mallard/Sweden/39/2002 (A/H5N3) segment 1 (PB2)	3701.8	0.000000e+00	2181/2270 (96%)
EPI469163	A/common teal/Hong Kong/MPD322/2007 (A/H11N9) segment 1 (PB2)	3701.8	0.000000e+00	2181/2270 (96%)
EPI401365	A/wild bird/Korea/YS109/2007 (A/H4N6) segment 1 (PB2)	3701.8	0.000000e+00	2181/2270 (96%)
EPI182409	A/duck/Primorie/2633/01 (A/H5N3) segment 1 (PB2)	3701.8	0.000000e+00	2181/2270 (96%)
EPI619284	A/mallard/Sweden/2834/2003 (A/H8N4) segment 1 (PB2)	3696.3	0.000000e+00	2180/2270 (96%)
EPI485633	A/mallard/Sweden/7/2002 (A/H5N2) segment 1 (PB2)	3696.3	0.000000e+00	2180/2270 (96%)
EPI469164	A/northern pintail/Hong Kong/MPC2085/2007 (A/H11N9) segment 1 (PB2)	3696.3	0.000000e+00	2180/2270 (96%)
EPI469162	A/wild waterfowl/Hong Kong/MPC729/2006 (A/H11N9) segment 1 (PB2)	3696.3	0.000000e+00	2180/2270 (96%)
EPI251798	A/mallard/Sweden/8/2003 (A/H8N4) segment 1 (PB2)	3696.3	0.000000e+00	2180/2270 (96%)
EPI251723	A/mallard/Sweden/48/2002 (A/H11N9) segment 1 (PB2)	3696.3	0.000000e+00	2180/2270 (96%)
EPI68178	A/duck/Italy/775/2004 (A/H5N3) segment 1 (PB2)	3696.3	0.000000e+00	2181/2271 (96%)
EPI387373	A/whooper swan/Mongolia/1-21/2007 (A/H3N1) segment 1 (PB2)	3694.4	0.000000e+00	2179/2269 (96%)
EPI514880	A/mallard/Sweden/1195/2002 (A/H4N2) segment 1 (PB2)	3690.7	0.000000e+00	2179/2270 (95%)
EPI514859	A/mallard/Sweden/814/2002 (A/H4N9) segment 1 (PB2)	3690.7	0.000000e+00	2179/2270 (95%)
EPI485710	A/mallard/Sweden/49/2002 (A/H5N9) segment 1 (PB2)	3690.7	0.000000e+00	2179/2270 (95%)
EPI406913	A/great black-headed gull/Qinghai/2/2007 (A/H5N1) segment 1 (PB2)	3690.7	0.000000e+00	2118/2178 (97%)
EPI406912	A/bar-headed goose/Qinghai/F/2007 (A/H5N1) segment 1 (PB2)	3690.7	0.000000e+00	2118/2178 (97%)
EPI377744	A/mallard/Sweden/111/2002 (A/H2N7) segment 1 (PB2)	3690.7	0.000000e+00	2179/2270 (95%)
EPI290280	A/chicken/Netherlands/03006724/03(H7N7) (A/H7N7) segment 1 (PB2)	3690.7	0.000000e+00	2179/2270 (95%)
EPI290193	A/chicken/Netherlands/03003096/03(H7N7) (A/H7N7) segment 1 (PB2)	3690.7	0.000000e+00	2179/2270 (95%)
EPI237756	A/chicken/Netherlands/03009274/03 (A/H7N7) segment 1 (PB2)	3690.7	0.000000e+00	2179/2270 (95%)
EPI237747	A/chicken/Netherlands/03008060/03 (A/H7N7) segment 1 (PB2)	3690.7	0.000000e+00	2179/2270 (95%)
EPI618203	A/mallard/Sweden/1645/2002 (A/H7N7) segment 1 (PB2)	3685.2	0.000000e+00	2178/2270 (95%)
EPI617060	A/mallard/Sweden/1671/2002 (A/H7N7) segment 1 (PB2)	3685.2	0.000000e+00	2178/2270 (95%)
EPI514918	A/mallard/Sweden/274/2002 (A/H4N2) segment 1 (PB2)	3685.2	0.000000e+00	2178/2270 (95%)
EPI446494	A/wild goose/Dongting/PC0360/2012 (A/H7N7) segment 1 (PB2)	3685.2	0.000000e+00	2179/2271 (95%)
EPI377756	A/mallard/Sweden/112/2002 (A/H2N7) segment 1 (PB2)	3685.2	0.000000e+00	2178/2270 (95%)
EPI295046	A/chicken/Netherlands/03013833/03(H7N7) (A/H7N7) segment 1 (PB2)	3685.2	0.000000e+00	2178/2270 (95%)
EPI294992	A/chicken/Netherlands/03009124/03(H7N7) (A/H7N7) segment 1 (PB2)	3685.2	0.000000e+00	2178/2270 (95%)
EPI294968	A/chicken/Netherlands/03008489/03(H7N7) (A/H7N7) segment 1 (PB2)	3685.2	0.000000e+00	2178/2270 (95%)
EPI294959	A/chicken/Netherlands/03008110/03(H7N7) (A/H7N7) segment 1 (PB2)	3685.2	0.000000e+00	2178/2270 (95%)
EPI294938	A/chicken/Netherlands/03008233/03(H7N7) (A/H7N7) segment 1 (PB2)	3685.2	0.000000e+00	2178/2270 (95%)
EPI294923	A/chicken/Netherlands/621629/03(H7N7) (A/H7N7) segment 1 (PB2)	3685.2	0.000000e+00	2178/2270 (95%)
EPI294914	A/chicken/Netherlands/03003214/03(H7N7)/strain2 (A/H7N7) segment 1 (PB2)	3685.2	0.000000e+00	2178/2270 (95%)
EPI294911	A/chicken/Netherlands/03003214/03(H7N7)/strain1 (A/H7N7) segment 1 (PB2)	3685.2	0.000000e+00	2178/2270 (95%)
EPI294905	A/chicken/Netherlands/03002973/03(H7N7) (A/H7N7) segment 1 (PB2)	3685.2	0.000000e+00	2178/2270 (95%)
EPI290475	A/chicken/Netherlands/03008926/03 (A/H7N7) segment 1 (PB2)	3685.2	0.000000e+00	2178/2270 (95%)
EPI290468	A/chicken/Netherlands/03008926/03 (A/H7N7) segment 1 (PB2)	3685.2	0.000000e+00	2178/2270 (95%)
EPI290465	A/chicken/Netherlands/03009656/03(H7N7) (A/H7N7) segment 1 (PB2)	3685.2	0.000000e+00	2178/2270 (95%)
EPI290462	A/domestic duck/Netherlands/621627/03(H7N7) (A/H7N7) segment 1 (PB2)	3685.2	0.000000e+00	2178/2270 (95%)
EPI290409	A/chicken/Netherlands/03009892/03(H7N7) (A/H7N7) segment 1 (PB2)	3685.2	0.000000e+00	2178/2270 (95%)
EPI290340	A/chicken/Netherlands/03009126/03(H7N7) (A/H7N7) segment 1 (PB2)	3685.2	0.000000e+00	2178/2270 (95%)
EPI290316	A/chicken/Netherlands/03008199/03(H7N7) (A/H7N7) segment 1 (PB2)	3685.2	0.000000e+00	2178/2270 (95%)
EPI290313	A/chicken/Netherlands/03009007/03(H7N7) (A/H7N7) segment 1 (PB2)	3685.2	0.000000e+00	2178/2270 (95%)
EPI290295	A/chicken/Netherlands/03008451/03(H7N7) (A/H7N7) segment 1 (PB2)	3685.2	0.000000e+00	2178/2270 (95%)
EPI290253	A/chicken/Netherlands/03006725/03(H7N7) (A/H7N7) segment 1 (PB2)	3685.2	0.000000e+00	2178/2270 (95%)
EPI290235	A/chicken/Netherlands/03003401/03(H7N7) (A/H7N7) segment 1 (PB2)	3685.2	0.000000e+00	2178/2270 (95%)
EPI290229	A/chicken/Netherlands/03003255/03(H7N7) (A/H7N7) segment 1 (PB2)	3685.2	0.000000e+00	2178/2270 (95%)
EPI290220	A/chicken/Netherlands/03003402/03(H7N7) (A/H7N7) segment 1 (PB2)	3685.2	0.000000e+00	2178/2270 (95%)
EPI290214	A/chicken/Netherlands/03003243/03(H7N7) (A/H7N7) segment 1 (PB2)	3685.2	0.000000e+00	2178/2270 (95%)
EPI290208	A/chicken/Netherlands/03003111/03(H7N7) (A/H7N7) segment 1 (PB2)	3685.2	0.000000e+00	2178/2270 (95%)
EPI290205	A/chicken/Netherlands/03003113/03(H7N7) (A/H7N7) segment 1 (PB2)	3685.2	0.000000e+00	2178/2270 (95%)
EPI290202	A/chicken/Netherlands/03003106/03(H7N7) (A/H7N7) segment 1 (PB2)	3685.2	0.000000e+00	2178/2270 (95%)
EPI290190	A/chicken/Netherlands/03002971/03(H7N7) (A/H7N7) segment 1 (PB2)	3685.2	0.000000e+00	2178/2270 (95%)
EPI290181	A/chicken/Netherlands/03003010/03(H7N7) (A/H7N7) segment 1 (PB2)	3685.2	0.000000e+00	2178/2270 (95%)
EPI237835	A/turkey/Netherlands/03009333/03 (A/H7N7) segment 1 (PB2)	3685.2	0.000000e+00	2178/2270 (95%)
EPI237832	A/chicken/Netherlands/03008128/03 (A/H7N7) segment 1 (PB2)	3685.2	0.000000e+00	2178/2270 (95%)
EPI237823	A/chicken/Netherlands/03011422/03 (A/H7N7) segment 1 (PB2)	3685.2	0.000000e+00	2178/2270 (95%)
EPI237805	A/chicken/Netherlands/03013010/03 (A/H7N7) segment 1 (PB2)	3685.2	0.000000e+00	2178/2270 (95%)
EPI237802	A/turkey/Netherlands/03012387/03 (A/H7N7) segment 1 (PB2)	3685.2	0.000000e+00	2178/2270 (95%)
EPI237753	A/chicken/Netherlands/03008377/03 (A/H7N7) segment 1 (PB2)	3685.2	0.000000e+00	2178/2270 (95%)
EPI237750	A/chicken/Netherlands/03008113/03 (A/H7N7) segment 1 (PB2)	3685.2	0.000000e+00	2178/2270 (95%)
EPI237744	A/chicken/Netherlands/03003531/03 (A/H7N7) segment 1 (PB2)	3685.2	0.000000e+00	2178/2270 (95%)
EPI237656	A/chicken/Netherlands/03003092/03 (A/H7N7) segment 1 (PB2)	3685.2	0.000000e+00	2178/2270 (95%)

niman · January 15, 2016

Descriptions

Segment-ID	Name	Score	E-Value	Identity
EPI687185	A/chicken/Scotland/532/2016 (A/H5N1) segment 2 (PB1)	4085.9	0.000000e+00	2212/2212 (100%)
EPI618617	A/mallard/Sweden/133546/2011 (A/H10N4) segment 2 (PB1)	3880.9	0.000000e+00	2173/2209 (98%)
EPI629347	A/chicken/NL-Barneveld/15004745-006-010/2015 (A/H7N7) segment 2 (PB1)	3836.6	0.000000e+00	2165/2209 (98%)
EPI629339	A/Chicken/NL-Barneveld/15004745-001-005/2015 (A/H7N7) segment 2 (PB1)	3836.6	0.000000e+00	2165/2209 (98%)
EPI623944	A/chicken/England/26352/2015 (A/H7N7) segment 2 (PB1)	3836.6	0.000000e+00	2165/2209 (98%)
EPI618043	A/mallard/Republic of Georgia/12/2011 (A/H10N4) segment 2 (PB1)	3820.0	0.000000e+00	2162/2209 (97%)
EPI617899	A/mallard/Republic of Georgia/1/2012 (A/H1N1) segment 2 (PB1)	3814.5	0.000000e+00	2161/2209 (97%)
EPI617760	A/mallard/Republic of Georgia/14/2011 (A/H10N7) segment 2 (PB1)	3792.3	0.000000e+00	2157/2209 (97%)
EPI514974	A/mallard/Sweden/80261/2008 (A/H4N9) segment 2 (PB1)	3792.3	0.000000e+00	2157/2209 (97%)
EPI617988	A/mallard/Republic of Georgia/3/2011 (A/H3N8) segment 2 (PB1)	3786.8	0.000000e+00	2156/2209 (97%)
EPI464920	A/guinea fowl/Italy/10VIR-218-134/2010 (A/H5N2) segment 2 (PB1)	3779.4	0.000000e+00	2153/2206 (97%)
EPI560057	A/mallard/Novomychalivka/2-23-12/2010 (A/H15N7) segment 2 (PB1)	3770.1	0.000000e+00	2153/2209 (97%)
EPI617954	A/Mediterranean gull/Republic of Georgia/1/2011 (A/H9N3) segment 2 (PB1)	3742.4	0.000000e+00	2148/2209 (97%)
EPI372361	A/shoveler/Egypt/14879-NAMRU3/2006 (A/H7N1) segment 2 (PB1)	3742.4	0.000000e+00	2148/2209 (97%)
EPI182047	A/common eider/Netherlands/1/2006 (A/H3N8) segment 2 (PB1)	3740.6	0.000000e+00	2149/2211 (97%)
EPI617793	A/yellow-legged gull/Republic of Georgia/1/2012 (A/H0) segment 2 (PB1)	3720.3	0.000000e+00	2144/2209 (97%)
EPI617820	A/tufted duck/Republic of Georgia/1/2012 (A/H2N3) segment 2 (PB1)	3698.1	0.000000e+00	2140/2209 (96%)
EPI464928	A/chicken/Italy/11VIR-7548/2011 (A/H5N2) segment 2 (PB1)	3692.6	0.000000e+00	2140/2210 (96%)
EPI345434	A/Larus argentatus/Belgium/02936cls9/2010 (A/H5N2) segment 2 (PB1)	3653.8	0.000000e+00	2128/2203 (96%)
EPI211183	A/mallard/Poland/16/09 (A/H7N7) segment 2 (PB1)	3653.8	0.000000e+00	2132/2209 (96%)
EPI618651	A/mallard/Sweden/69794/2007 (A/H12N5) segment 2 (PB1)	3648.3	0.000000e+00	2131/2209 (96%)
EPI618636	A/mallard/Sweden/68529/2007 (A/H12N5) segment 2 (PB1)	3648.3	0.000000e+00	2131/2209 (96%)
EPI618622	A/mallard/Sweden/60069/2007 (A/H12N5) segment 2 (PB1)	3648.3	0.000000e+00	2131/2209 (96%)
EPI618407	A/mallard/Sweden/101589/2009 (A/H11N9) segment 2 (PB1)	3642.7	0.000000e+00	2130/2209 (96%)
EPI464944	A/chicken/Italy/12VIR-7785-67/2012 (A/H5N2) segment 2 (PB1)	3642.7	0.000000e+00	2131/2210 (96%)
EPI464936	A/turkey/Italy/12VIR-6607-5/2012 (A/H5N2) segment 2 (PB1)	3642.7	0.000000e+00	2131/2210 (96%)
EPI618605	A/mallard/Sweden/107688/2009 (A/H10N1) segment 2 (PB1)	3637.2	0.000000e+00	2130/2210 (96%)
EPI464952	A/turkey/Italy/12VIR-8036-2/2012 (A/H5N2) segment 2 (PB1)	3637.2	0.000000e+00	2130/2210 (96%)
EPI618937	A/mallard/Sweden/101165/2009 (A/H8N4) segment 2 (PB1)	3631.6	0.000000e+00	2129/2210 (96%)
EPI618014	A/mallard/Republic of Georgia/4/2010 (A/H1N1) segment 2 (PB1)	3626.1	0.000000e+00	2128/2210 (96%)
EPI387542	A/white-fronted goose/Mongolia/1-125/2008 (A/H3N8) segment 2 (PB1)	3626.1	0.000000e+00	2128/2210 (96%)
EPI378008	A/mallard/Netherlands/29/2010 (A/H2N3) segment 2 (PB1)	3620.6	0.000000e+00	2129/2212 (96%)
EPI457917	A/duck/Guangxi/GXd-4/2011 (A/H1N2) segment 2 (PB1)	3615.0	0.000000e+00	2125/2209 (96%)
EPI618448	A/mallard/Sweden/101993/2009 (A/H2N9) segment 2 (PB1)	3609.5	0.000000e+00	2126/2211 (96%)
EPI475930	A/mallard/Iceland/1007/2011 (A/H3N6) segment 2 (PB1)	3609.5	0.000000e+00	2125/2210 (96%)
EPI367587	A/mallard/Czech Republic/15008-11K/2009 (A/H5N3) segment 2 (PB1)	3603.9	0.000000e+00	2123/2209 (96%)
EPI475944	A/great black-backed gull/Iceland/1110/2011 (A/H5N2) segment 2 (PB1)	3592.9	0.000000e+00	2123/2211 (96%)
EPI457909	A/duck/Guangxi/GXd-1/2011 (A/H1N2) segment 2 (PB1)	3592.9	0.000000e+00	2121/2209 (96%)
EPI336987	A/duck/Zhejiang/2245/2011 (A/H5N1) segment 2 (PB1)	3592.9	0.000000e+00	2121/2209 (96%)
EPI527622	A/mallard/Mongolia/1581/2010 (A/H3N8) segment 2 (PB1)	3587.3	0.000000e+00	2120/2209 (95%)
EPI527631	A/mallard /Mongolia/1551/2010 (A/H3N1) segment 2 (PB1)	3581.8	0.000000e+00	2120/2210 (95%)
EPI439584	A/avian/Israel/289/2001 (A/H6N2) segment 2 (PB1)	3581.8	0.000000e+00	2119/2209 (95%)
EPI433380	A/mallard/Czech Republic/15902-18K/2009 (A/H6N9) segment 2 (PB1)	3581.8	0.000000e+00	2120/2210 (95%)
EPI367595	A/mallard/Czech Republic/15962-1T/2010 (A/H6N9) segment 2 (PB1)	3581.8	0.000000e+00	2120/2210 (95%)
EPI284355	A/mallard/Czech Republic/15902-17K/2009 (A/H6N2) segment 2 (PB1)	3581.8	0.000000e+00	2120/2210 (95%)
EPI618214	A/mallard/Sweden/1689/2002 (A/H7N7) segment 2 (PB1)	3572.5	0.000000e+00	2117/2208 (95%)
EPI618201	A/mallard/Sweden/1645/2002 (A/H7N7) segment 2 (PB1)	3572.5	0.000000e+00	2117/2208 (95%)
EPI618139	A/mallard/Sweden/1690/2002 (A/H7N7) segment 2 (PB1)	3572.5	0.000000e+00	2117/2208 (95%)
EPI617059	A/mallard/Sweden/1671/2002 (A/H7N7) segment 2 (PB1)	3572.5	0.000000e+00	2117/2208 (95%)
EPI335410	A/aquatic bird/Korea/CN17/2009 (A/H6N2) segment 2 (PB1)	3570.7	0.000000e+00	2118/2210 (95%)
EPI439586	A/avian/Israel/320/2001 (A/H6N2) segment 2 (PB1)	3567.0	0.000000e+00	2116/2209 (95%)
EPI618913	A/mallard/Sweden/51726/2006 (A/H10N4) segment 2 (PB1)	3565.2	0.000000e+00	2117/2210 (95%)
EPI618885	A/mallard/Sweden/51619/2006 (A/H10N4) segment 2 (PB1)	3565.2	0.000000e+00	2117/2210 (95%)
EPI485721	A/mallard/Sweden/49/2002 (A/H5N9) segment 2 (PB1)	3559.6	0.000000e+00	2115/2209 (95%)
EPI236192	A/mallard/Sweden/49/2002 (A/H5N9) segment 2 (PB1)	3559.6	0.000000e+00	2115/2209 (95%)
EPI173879	A/goose/Italy/296426/2003 (A/H1N1) segment 2 (PB1)	3559.6	0.000000e+00	2116/2210 (95%)
EPI167837	A/goose/Italy/296426/2003 (A/H1N1) segment 2 (PB1)	3559.6	0.000000e+00	2116/2210 (95%)
EPI618135	A/mallard/Sweden/6039/2005 (A/H10N4) segment 2 (PB1)	3554.1	0.000000e+00	2116/2211 (95%)
EPI439580	A/avian/Israel/824/2005 (A/H10N2) segment 2 (PB1)	3554.1	0.000000e+00	2114/2209 (95%)
EPI229961	A/duck/France/05057b/2005 (A/H5N2) segment 2 (PB1)	3554.1	0.000000e+00	2116/2211 (95%)
EPI169291	A/duck/France/05057b/2005 (A/H5N2) segment 2 (PB1)	3554.1	0.000000e+00	2116/2211 (95%)
EPI618848	A/mallard/Sweden/8023/2005 (A/H10N4) segment 2 (PB1)	3548.5	0.000000e+00	2116/2212 (95%)
EPI514709	A/mallard/Sweden/5755/2005 (A/H4N6) segment 2 (PB1)	3548.5	0.000000e+00	2115/2211 (95%)
EPI514334	A/mallard/Sweden/52249/2006 (A/H4N6) segment 2 (PB1)	3548.5	0.000000e+00	2115/2211 (95%)
EPI514276	A/mallard/Sweden/52334/2006 (A/H4N6) segment 2 (PB1)	3548.5	0.000000e+00	2115/2211 (95%)
EPI514050	A/mallard/Sweden/68504/2007 (A/H4N2) segment 2 (PB1)	3548.5	0.000000e+00	2114/2210 (95%)
EPI372273	A/teal/Egypt/20431-NAMRU3/2003 (A/H1N2) segment 2 (PB1)	3548.5	0.000000e+00	2115/2211 (95%)
EPI514671	A/mallard/Sweden/7582/2003 (A/H4N6) segment 2 (PB1)	3544.8	0.000000e+00	2114/2210 (95%)
EPI618644	A/mallard/Sweden/366/2002 (A/H11N9) segment 2 (PB1)	3543.0	0.000000e+00	2113/2210 (95%)
EPI514716	A/mallard/Sweden/5763/2005 (A/H4N6) segment 2 (PB1)	3543.0	0.000000e+00	2113/2210 (95%)
EPI514681	A/mallard/Sweden/5714/2005 (A/H4N6) segment 2 (PB1)	3543.0	0.000000e+00	2113/2210 (95%)
EPI514650	A/mallard/Sweden/5814/2005 (A/H4N6) segment 2 (PB1)	3543.0	0.000000e+00	2113/2210 (95%)
EPI514643	A/mallard/Sweden/5811/2005 (A/H4N6) segment 2 (PB1)	3543.0	0.000000e+00	2114/2211 (95%)
EPI514636	A/mallard/Sweden/5803/2005 (A/H4N6) segment 2 (PB1)	3543.0	0.000000e+00	2114/2211 (95%)
EPI514012	A/mallard/Sweden/68551/2007 (A/H4N2) segment 2 (PB1)	3543.0	0.000000e+00	2113/2210 (95%)
EPI513968	A/mallard/Sweden/68677/2007 (A/H0) segment 2 (PB1)	3543.0	0.000000e+00	2113/2210 (95%)
EPI513588	A/mallard/Sweden/80415/2008 (A/H0) segment 2 (PB1)	3543.0	0.000000e+00	2114/2211 (95%)
EPI485608	A/mallard/Sweden/16/2002 (A/H12N9) segment 2 (PB1)	3543.0	0.000000e+00	2113/2210 (95%)
EPI377795	A/mallard/Sweden/57/2002 (A/H2N3) segment 2 (PB1)	3543.0	0.000000e+00	2114/2211 (95%)
EPI372472	A/teal/Ukraine/12177-NAMRU3/2005 (A/H7N9) segment 2 (PB1)	3543.0	0.000000e+00	2113/2210 (95%)
EPI372384	A/teal/Egypt/13203-NAMRU3/2006 (A/H6N2) segment 2 (PB1)	3543.0	0.000000e+00	2113/2210 (95%)
EPI336010	A/teal/Chany/444/2009 (A/H8N8) segment 2 (PB1)	3543.0	0.000000e+00	2113/2210 (95%)
EPI285821	A/avian/Egypt/920431/2006 (A/H9N2) segment 2 (PB1)	3543.0	0.000000e+00	2112/2208 (95%)
EPI618966	A/mallard/Sweden/1417/2002 (A/H10N7) segment 2 (PB1)	3539.3	0.000000e+00	2112/2209 (95%)
EPI618541	A/mallard/Sweden/50980/2006 (A/H11N9) segment 2 (PB1)	3537.5	0.000000e+00	2112/2210 (95%)
EPI618496	A/mallard/Sweden/2321/2004 (A/H0) segment 2 (PB1)	3537.5	0.000000e+00	2112/2210 (95%)
EPI618486	A/mallard/Sweden/100832/2009 (A/H11N9) segment 2 (PB1)	3537.5	0.000000e+00	2112/2210 (95%)
EPI618472	A/mallard/Sweden/101120/2009 (A/H2N9) segment 2 (PB1)	3537.5	0.000000e+00	2112/2210 (95%)
EPI618465	A/mallard/Sweden/101082/2009 (A/H11N9) segment 2 (PB1)	3537.5	0.000000e+00	2112/2210 (95%)
EPI618360	A/mallard/Sweden/100760/2009 (A/H11N9) segment 2 (PB1)	3537.5	0.000000e+00	2112/2210 (95%)
EPI618352	A/mallard/Sweden/100687/2009 (A/H11N9) segment 2 (PB1)	3537.5	0.000000e+00	2112/2210 (95%)
EPI618344	A/mallard/Sweden/100879/2009 (A/H11N9) segment 2 (PB1)	3537.5	0.000000e+00	2112/2210 (95%)
EPI618340	A/mallard/Sweden/100740/2009 (A/H11N9) segment 2 (PB1)	3537.5	0.000000e+00	2112/2210 (95%)
EPI618327	A/mallard/Sweden/100791/2009 (A/H11N9) segment 2 (PB1)	3537.5	0.000000e+00	2112/2210 (95%)
EPI618068	A/mallard/Sweden/8004/2005 (A/H10N4) segment 2 (PB1)	3537.5	0.000000e+00	2113/2211 (95%)
EPI617025	A/mallard/Sweden/80329/2008 (A/H11N5) segment 2 (PB1)	3537.5	0.000000e+00	2112/2210 (95%)
EPI514743	A/mallard/Sweden/4508/2004 (A/H4N6) segment 2 (PB1)	3537.5	0.000000e+00	2112/2210 (95%)
EPI514003	A/mallard/Sweden/68940/2007 (A/H4N2) segment 2 (PB1)	3537.5	0.000000e+00	2112/2210 (95%)
EPI513482	A/mallard/Sweden/101294/2009 (A/H4N9) segment 2 (PB1)	3537.5	0.000000e+00	2112/2210 (95%)
EPI377678	A/mallard/Sweden/99/2002 (A/H2N3) segment 2 (PB1)	3537.5	0.000000e+00	2112/2210 (95%)

niman · January 15, 2016

Descriptions

Segment-ID	Name	Score	E-Value	Identity
EPI687186	A/chicken/Scotland/532/2016 (A/H5N1) segment 3 (PA)	3973.3	0.000000e+00	2151/2151 (100%)
EPI614284	A/mallard/Republic of Georgia/1/2010 (A/H10N7) segment 3 (PA)	3724.0	0.000000e+00	2106/2151 (97%)
EPI377637	A/northern shoveler/Georgia/1/2010 (A/H2N3) segment 3 (PA)	3724.0	0.000000e+00	2106/2151 (97%)
EPI363454	A/duck/Guangxi/1074/2006 (A/H6N2) segment 3 (PA)	3718.4	0.000000e+00	2105/2151 (97%)
EPI363462	A/duck/Guangxi/1157/2006 (A/H6N2) segment 3 (PA)	3712.9	0.000000e+00	2104/2151 (97%)
EPI296255	A/wild duck/Korea/SH60/2004 (A/H1N1) segment 3 (PA)	3712.9	0.000000e+00	2104/2151 (97%)
EPI345928	A/whistling swan/Shimane/580/2002 (A/H5N3) segment 3 (PA)	3707.3	0.000000e+00	2104/2152 (97%)
EPI296257	A/wild duck/Korea/CSM38/2004 (A/H1N1) segment 3 (PA)	3707.3	0.000000e+00	2103/2151 (97%)
EPI268817	A/duck/Hunan/177/2005 (A/H6N1) segment 3 (PA)	3707.3	0.000000e+00	2103/2151 (97%)
EPI118289	A/duck/Jiang Xi/1286/2005 (A/H5N2) segment 3 (PA)	3707.3	0.000000e+00	2103/2151 (97%)
EPI614286	A/mallard/Republic of Georgia/3/2010 (A/H7N3) segment 3 (PA)	3701.8	0.000000e+00	2102/2151 (97%)
EPI493025	A/wild waterfowl/Dongting/C2383/2012 (A/H1N2) segment 3 (PA)	3701.8	0.000000e+00	2102/2151 (97%)
EPI363470	A/duck/Guangxi/1248/2006 (A/H6N2) segment 3 (PA)	3701.8	0.000000e+00	2102/2151 (97%)
EPI262642	A/aquatic bird/Korea/w74/2005 (A/H5N2) segment 3 (PA)	3701.8	0.000000e+00	2103/2152 (97%)
EPI140261	A/migratory duck/Jiang Xi/6568/2004 (A/H4N6) segment 3 (PA)	3701.8	0.000000e+00	2102/2151 (97%)
EPI118295	A/duck/Jiang Xi/2374/2005 (A/H3N6) segment 3 (PA)	3701.8	0.000000e+00	2102/2151 (97%)
EPI614298	A/common coot/Republic of Georgia/1/2010 (A/H6N2) segment 3 (PA)	3696.3	0.000000e+00	2102/2152 (97%)
EPI387502	A/canvasback/Mongolia/2-69/2007 (A/H10) segment 3 (PA)	3696.3	0.000000e+00	2100/2149 (97%)
EPI262643	A/aquatic bird/Korea/w79/2005 (A/H5N2) segment 3 (PA)	3696.3	0.000000e+00	2102/2152 (97%)
EPI262641	A/aquatic bird/Korea/w54/2005 (A/H5N2) segment 3 (PA)	3696.3	0.000000e+00	2102/2152 (97%)
EPI118337	A/duck/Jiang Xi/3345/2005 (A/H5N2) segment 3 (PA)	3696.3	0.000000e+00	2101/2151 (97%)
EPI118321	A/duck/Jiang Xi/1850/2005 (A/H5N2) segment 3 (PA)	3696.3	0.000000e+00	2101/2151 (97%)
EPI487590	A/wild duck/Jiangxi/10179/2005 (A/H7N3) segment 3 (PA)	3690.7	0.000000e+00	2100/2151 (97%)
EPI387412	A/ruddy shelduck/Mongolia/1-26/2007 (A/H3N8) segment 3 (PA)	3690.7	0.000000e+00	2101/2152 (97%)
EPI363534	A/duck/Guizhou/2773/2006 (A/H6N2) segment 3 (PA)	3690.7	0.000000e+00	2101/2152 (97%)
EPI326817	A/environment/Korea/CSM05/2004 (A/H3N1) segment 3 (PA)	3690.7	0.000000e+00	2100/2151 (97%)
EPI296253	A/wild duck/Korea/CW09/2005 (A/H1N1) segment 3 (PA)	3690.7	0.000000e+00	2100/2151 (97%)
EPI268977	A/mallard/Jiangxi/4408/2005 (A/H6N8) segment 3 (PA)	3690.7	0.000000e+00	2100/2151 (97%)
EPI268960	A/mallard/Jiangxi/8346/2004 (A/H6N5) segment 3 (PA)	3690.7	0.000000e+00	2100/2151 (97%)
EPI262644	A/aquatic bird/Korea/w81/2005 (A/H5N2) segment 3 (PA)	3690.7	0.000000e+00	2101/2152 (97%)
EPI360053	A/duck/Suphanburi/AI157/2005 (A/H6N1) segment 3 (PA)	3685.2	0.000000e+00	2099/2151 (97%)
EPI307313	A/aquatic bird/Korea/MA81/2007 (A/H5N2) segment 3 (PA)	3685.2	0.000000e+00	2100/2152 (97%)
EPI307311	A/mallard duck/Korea/6L/2007 (A/H7N6) segment 3 (PA)	3685.2	0.000000e+00	2100/2152 (97%)
EPI262663	A/aquatic bird/Korea/w222/2007 (A/H5N2) segment 3 (PA)	3685.2	0.000000e+00	2099/2151 (97%)
EPI258967	A/aquatic bird/Korea/w164/2007 (A/H5N2) segment 3 (PA)	3685.2	0.000000e+00	2099/2151 (97%)
EPI258966	A/aquatic bird/Korea/w163/2007 (A/H5N2) segment 3 (PA)	3685.2	0.000000e+00	2099/2151 (97%)
EPI131894	A/sharp-tailed sandpiper/Australia/10/2004 (A/H11N9) segment 3 (PA)	3685.2	0.000000e+00	2099/2151 (97%)
EPI69246	A/sharp-tailed sandpiper/Australia/6/2004 (A/H11N9) segment 3 (PA)	3685.2	0.000000e+00	2099/2151 (97%)
EPI335409	A/aquatic bird/Korea/CN17/2009 (A/H6N2) segment 3 (PA)	3679.6	0.000000e+00	2098/2151 (97%)
EPI316751	A/mallard/Czech Republic/13438-29K/2010 (A/H11N9) segment 3 (PA)	3679.6	0.000000e+00	2098/2151 (97%)
EPI268979	A/duck/Hunan/3748/2004 (A/H6N8) segment 3 (PA)	3679.6	0.000000e+00	2098/2151 (97%)
EPI614278	A/mallard/Republic of Georgia/2/2012 (A/H2N3) segment 3 (PA)	3674.1	0.000000e+00	2097/2151 (97%)
EPI538470	A/common shelduck/Mongolia/2187/2011 (A/H5N3) segment 3 (PA)	3674.1	0.000000e+00	2097/2151 (97%)
EPI538433	A/wild bird/Mongolia/2066/2011 (A/H5N3) segment 3 (PA)	3674.1	0.000000e+00	2097/2151 (97%)
EPI401299	A/wild duck/Korea/CSM20-5/2009 (A/H4N6) segment 3 (PA)	3674.1	0.000000e+00	2097/2151 (97%)
EPI363890	A/duck/Guangxi/1330/2007 (A/H6N8) segment 3 (PA)	3674.1	0.000000e+00	2097/2151 (97%)
EPI363882	A/duck/Guangxi/890/2007 (A/H6N8) segment 3 (PA)	3674.1	0.000000e+00	2097/2151 (97%)
EPI307308	A/aquatic bird/Korea/w44/2005 (A/H7N3) segment 3 (PA)	3674.1	0.000000e+00	2098/2152 (97%)
EPI268961	A/mallard/Jiangxi/8341/2004 (A/H6N5) segment 3 (PA)	3674.1	0.000000e+00	2097/2151 (97%)
EPI262667	A/aquatic bird/Korea/w234/2007 (A/H5N2) segment 3 (PA)	3674.1	0.000000e+00	2097/2151 (97%)
EPI262666	A/aquatic bird/Korea/w231/2007 (A/H5N2) segment 3 (PA)	3674.1	0.000000e+00	2097/2151 (97%)
EPI258965	A/aquatic bird/Korea/w161/2007 (A/H5N2) segment 3 (PA)	3674.1	0.000000e+00	2097/2151 (97%)
EPI244497	A/mallard/Korea/GH170/2007 (A/H7N7) segment 3 (PA)	3674.1	0.000000e+00	2098/2152 (97%)
EPI387406	A/whooper swan/Mongolia/1-25/2007 (A/H3N8) segment 3 (PA)	3672.3	0.000000e+00	2095/2148 (97%)
EPI599169	A/migratory duck/Jiangxi/593/2005 (A/H10N8) segment 3 (PA)	3668.6	0.000000e+00	2096/2151 (97%)
EPI568314	A/duck/Jiangxi/501/2006 (A/H10N3) segment 3 (PA)	3668.6	0.000000e+00	2096/2151 (97%)
EPI568311	A/duck/Jiangxi/468/2006 (A/H10N3) segment 3 (PA)	3668.6	0.000000e+00	2096/2151 (97%)
EPI568308	A/duck/Jiangxi/422/2006 (A/H10N3) segment 3 (PA)	3668.6	0.000000e+00	2096/2151 (97%)
EPI568305	A/duck/Jiangxi/386/2006 (A/H10N3) segment 3 (PA)	3668.6	0.000000e+00	2096/2151 (97%)
EPI568267	A/duck/Jiangxi/302/2006 (A/H10N3) segment 3 (PA)	3668.6	0.000000e+00	2096/2151 (97%)
EPI568264	A/duck/Jiangxi/13946/2005 (A/H10N3) segment 3 (PA)	3668.6	0.000000e+00	2096/2151 (97%)
EPI307312	A/aquatic bird/Korea/MA44/2007 (A/H7N3) segment 3 (PA)	3668.6	0.000000e+00	2097/2152 (97%)
EPI268981	A/duck/Hunan/1469/2002 (A/H6N8) segment 3 (PA)	3668.6	0.000000e+00	2096/2151 (97%)
EPI268962	A/duck/Guangxi/1455/2004 (A/H6N5) segment 3 (PA)	3668.6	0.000000e+00	2096/2151 (97%)
EPI262658	A/aquatic bird/Korea/w211/2007 (A/H5N2) segment 3 (PA)	3668.6	0.000000e+00	2096/2151 (97%)
EPI262657	A/aquatic bird/Korea/w208/2007 (A/H5N2) segment 3 (PA)	3668.6	0.000000e+00	2096/2151 (97%)
EPI182382	A/Baikal Teal/Hongze/14/2005 (A/H11N9) segment 3 (PA)	3668.6	0.000000e+00	2096/2151 (97%)
EPI614294	A/tufted duck/Republic of Georgia/1/2012 (A/H2N3) segment 3 (PA)	3663.0	0.000000e+00	2095/2151 (97%)
EPI599172	A/migratory duck/Jiangxi/21248/2009 (A/H10N8) segment 3 (PA)	3663.0	0.000000e+00	2095/2151 (97%)
EPI599168	A/duck/Jiangxi/2039/2005 (A/H10N8) segment 3 (PA)	3663.0	0.000000e+00	2095/2151 (97%)
EPI599153	A/duck/Jiangxi/13875/2005 (A/H10N3) segment 3 (PA)	3663.0	0.000000e+00	2095/2151 (97%)
EPI568317	A/duck/Jiangxi/860/2006 (A/H10N3) segment 3 (PA)	3663.0	0.000000e+00	2095/2151 (97%)
EPI401283	A/duck/Korea/DY97/2007 (A/H4N3) segment 3 (PA)	3663.0	0.000000e+00	2095/2151 (97%)
EPI275178	A/thick-billed murre/Alaska/44145-199/2006 (A/H2N6) segment 3 (PA)	3663.0	0.000000e+00	2096/2152 (97%)
EPI268978	A/mallard/Jiangxi/6285/2004 (A/H6N8) segment 3 (PA)	3663.0	0.000000e+00	2095/2151 (97%)
EPI262660	A/aquatic bird/Korea/w217/2007 (A/H5N2) segment 3 (PA)	3663.0	0.000000e+00	2095/2151 (97%)
EPI262656	A/aquatic bird/Korea/w206/2007 (A/H5N2) segment 3 (PA)	3663.0	0.000000e+00	2095/2151 (97%)
EPI244544	A/mallard/Korea/GH171/2007 (A/H7N7) segment 3 (PA)	3663.0	0.000000e+00	2096/2152 (97%)
EPI244507	A/magpie/Korea/YJD174/2007 (A/H7N7) segment 3 (PA)	3663.0	0.000000e+00	2096/2152 (97%)
EPI3391	A/duck/Hokkaido/84/2002 (A/H5N3) segment 3 (PA)	3663.0	0.000000e+00	2095/2151 (97%)
EPI262654	A/aquatic bird/Korea/w204/2007 (A/H5N2) segment 3 (PA)	3659.3	0.000000e+00	2095/2152 (97%)
EPI599149	A/migratory duck/Jiangxi/9334/2005 (A/H10N6) segment 3 (PA)	3657.5	0.000000e+00	2094/2151 (97%)
EPI584261	A/duck/Hunan/S3137/2009 (A/H10N8) segment 3 (PA)	3657.5	0.000000e+00	2094/2151 (97%)
EPI538411	A/common teal/Mongolia/2273/2011 (A/H6N6) segment 3 (PA)	3657.5	0.000000e+00	2088/2142 (97%)
EPI363898	A/duck/Guangxi/1533/2007 (A/H6N2) segment 3 (PA)	3657.5	0.000000e+00	2095/2152 (97%)
EPI363694	A/duck/Taiwan/DV30-2/2005 (A/H5N2) segment 3 (PA)	3657.5	0.000000e+00	2094/2151 (97%)
EPI363486	A/duck/Guangxi/2736/2006 (A/H6N8) segment 3 (PA)	3657.5	0.000000e+00	2096/2153 (97%)
EPI361728	A/lesser whistling-duck/Thailand/CU-W3941/2010 (A/H12N1) segment 3 (PA)	3657.5	0.000000e+00	2092/2148 (97%)
EPI296248	A/wild duck/Korea/ESD48/2006 (A/H1N1) segment 3 (PA)	3657.5	0.000000e+00	2095/2152 (97%)
EPI599133	A/duck/Jiangxi/24570/2009 (A/H0) segment 3 (PA)	3651.9	0.000000e+00	2093/2151 (97%)
EPI598308	A/migratory duck/Jiangxi/9492/2005 (A/H10N6) segment 3 (PA)	3651.9	0.000000e+00	2093/2151 (97%)
EPI533885	A/duck/Guangxi/125D17/2012 (A/H4N2) segment 3 (PA)	3651.9	0.000000e+00	2093/2151 (97%)
EPI461828	A/duck/Hunan/S4474/2011 (A/H11N9) segment 3 (PA)	3651.9	0.000000e+00	2093/2151 (97%)
EPI461824	A/duck/Hunan/S4137/2011 (A/H11N9) segment 3 (PA)	3651.9	0.000000e+00	2093/2151 (97%)
EPI461686	A/duck/Hunan/S4013/2011 (A/H11N9) segment 3 (PA)	3651.9	0.000000e+00	2093/2151 (97%)
EPI439067	A/domestic green-winged teal/Hunan/3450/2006 (A/H5N1) segment 3 (PA)	3651.9	0.000000e+00	2095/2153 (97%)
EPI268958	A/duck/Hunan/748/2005 (A/H6N5) segment 3 (PA)	3651.9	0.000000e+00	2093/2151 (97%)
EPI182387	A/spotbill duck/Xuyi/6/2005 (A/H11N2) segment 3 (PA)	3651.9	0.000000e+00	2093/2151 (97%)
EPI599150	A/migratory duck/Jiangxi/10974/2005 (A/H10N6) segment 3 (PA)	3646.4	0.000000e+00	2092/2151 (97%)
EPI598310	A/migratory duck/Jiangxi/7231/2003 (A/H10N5) segment 3 (PA)	3646.4	0.000000e+00	2092/2151 (97%)

niman · January 15, 2016

Descriptions

Segment-ID	Name	Score	E-Value	Identity
EPI687188	A/chicken/Scotland/532/2016 (A/H5N1) segment 5 (NP)	2765.6	0.000000e+00	1497/1497 (100%)
EPI617869	A/mallard/Republic of Georgia/4/2012 (A/H1N1) segment 5 (NP)	2665.8	0.000000e+00	1479/1497 (98%)
EPI493029	A/wild waterfowl/Dongting/C2383/2012 (A/H1N2) segment 5 (NP)	2616.0	0.000000e+00	1470/1497 (98%)
EPI683033	A/wild bird/Wuhan/WHHN58/2014 (A/H1N1) segment 5 (NP)	2599.4	0.000000e+00	1467/1497 (97%)
EPI683032	A/wild bird/Wuhan/WHHN16/2014 (A/H1N1) segment 5 (NP)	2599.4	0.000000e+00	1467/1497 (97%)
EPI438282	A/duck/Vietnam/LBM300/2012 (A/H10N2) segment 5 (NP)	2599.4	0.000000e+00	1467/1497 (97%)
EPI618038	A/domestic duck/Republic of Georgia/2/2010 (A/H10N7) segment 5 (NP)	2593.8	0.000000e+00	1467/1498 (97%)
EPI618025	A/domestic duck/Republic of Georgia/1/2010 (A/H10N7) segment 5 (NP)	2593.8	0.000000e+00	1467/1498 (97%)
EPI601644	A/duck/Jiangxi/5581/2013 (A/H0) segment 5 (NP)	2593.8	0.000000e+00	1466/1497 (97%)
EPI601635	A/duck/Jiangxi/5576/2013 (A/H0) segment 5 (NP)	2593.8	0.000000e+00	1466/1497 (97%)
EPI461630	A/duck/Hunan/S1256/2012 (A/H3N8) segment 5 (NP)	2593.8	0.000000e+00	1466/1497 (97%)
EPI446508	A/wild goose/Dongting/C1037/2011 (A/H12N8) segment 5 (NP)	2590.1	0.000000e+00	1465/1497 (97%)
EPI601705	A/duck/Jiangxi/285/2013 (A/H0) segment 5 (NP)	2588.3	0.000000e+00	1465/1497 (97%)
EPI617996	A/mallard/Republic of Georgia/3/2010 (A/H7N3) segment 5 (NP)	2582.7	0.000000e+00	1464/1497 (97%)
EPI617758	A/mallard/Republic of Georgia/14/2011 (A/H10N7) segment 5 (NP)	2582.7	0.000000e+00	1464/1497 (97%)
EPI470398	A/wild waterfowl/Hong Kong/MPP1311/2013 (A/H2N9) segment 5 (NP)	2582.7	0.000000e+00	1464/1497 (97%)
EPI407865	A/Khaki Campbell duck/Karachi/NARC-23963/2010 (A/H4N6) segment 5 (NP)	2579.0	0.000000e+00	1463/1497 (97%)
EPI617968	A/mallard/Republic of Georgia/1/2010 (A/H10N7) segment 5 (NP)	2577.2	0.000000e+00	1463/1497 (97%)
EPI601836	A/duck/Jiangxi/17142/2013 (A/H0) segment 5 (NP)	2577.2	0.000000e+00	1464/1498 (97%)
EPI596635	A/duck/Quang Ninh/14/2013 (A/H3N6) segment 5 (NP)	2577.2	0.000000e+00	1463/1497 (97%)
EPI591918	A/wild bird/Jiangxi/34503/2013 (A/H7N7) segment 5 (NP)	2577.2	0.000000e+00	1463/1497 (97%)
EPI683042	A/chicken/Wuhan/WHJF/2014 (A/H5N2) segment 5 (NP)	2571.7	0.000000e+00	1462/1497 (97%)
EPI599810	A/duck/Jiangxi/15867/2013 (A/H10N3) segment 5 (NP)	2571.7	0.000000e+00	1463/1498 (97%)
EPI591924	A/wild bird/Jiangxi/35982/2013 (A/H7N7) segment 5 (NP)	2571.7	0.000000e+00	1462/1497 (97%)
EPI591912	A/wild bird/Jiangxi/34458/2013 (A/H7N7) segment 5 (NP)	2571.7	0.000000e+00	1462/1497 (97%)
EPI590035	A/duck/Quang Ninh/220/2014 (A/H3N2) segment 5 (NP)	2571.7	0.000000e+00	1462/1497 (97%)
EPI683035	A/wild bird/Wuhan/CDHN01/2015 (A/H11N9) segment 5 (NP)	2566.1	0.000000e+00	1461/1497 (97%)
EPI617770	A/mallard/Republic of Georgia/15/2011 (A/H10N7) segment 5 (NP)	2566.1	0.000000e+00	1461/1497 (97%)
EPI596424	A/duck/Vietnam/LBM439/2013 (A/H6N6) segment 5 (NP)	2566.1	0.000000e+00	1461/1497 (97%)
EPI583947	A/chicken/Jiangxi/10784/2014 (A/H7N7) segment 5 (NP)	2566.1	0.000000e+00	1461/1497 (97%)
EPI470377	A/wild duck/Jiangxi/19831/2009 (A/H7N7) segment 5 (NP)	2566.1	0.000000e+00	1461/1497 (97%)
EPI683037	A/wild bird/Wuhan/CDHN173/2015 (A/H11N9) segment 5 (NP)	2560.6	0.000000e+00	1460/1497 (97%)
EPI683036	A/wild bird/Wuhan/CDHN22/2015 (A/H11N9) segment 5 (NP)	2560.6	0.000000e+00	1460/1497 (97%)
EPI600185	A/migratory duck/Jiangxi/33520/2013 (A/H10N7) segment 5 (NP)	2560.6	0.000000e+00	1460/1497 (97%)
EPI600179	A/migratory duck/Jiangxi/33238/2013 (A/H10N7) segment 5 (NP)	2560.6	0.000000e+00	1460/1497 (97%)
EPI600173	A/migratory duck/Jiangxi/33195/2013 (A/H10N7) segment 5 (NP)	2560.6	0.000000e+00	1460/1497 (97%)
EPI600167	A/migratory duck/Jiangxi/33158/2013 (A/H10N7) segment 5 (NP)	2560.6	0.000000e+00	1460/1497 (97%)
EPI600159	A/migratory duck/Jiangxi/33038/2013 (A/H10N7) segment 5 (NP)	2560.6	0.000000e+00	1460/1497 (97%)
EPI590230	A/duck/Hokkaido/W280/2014 (A/H5N3) segment 5 (NP)	2560.6	0.000000e+00	1460/1497 (97%)
EPI590216	A/duck/Hokkaido/W240/2014 (A/H5N3) segment 5 (NP)	2560.6	0.000000e+00	1460/1497 (97%)
EPI470437	A/common teal/Hong Kong/MPM1670/2011 (A/H7N7) segment 5 (NP)	2560.6	0.000000e+00	1461/1498 (97%)
EPI392508	A/pintail/Korea/1173/09 (A/H7N7) segment 5 (NP)	2560.6	0.000000e+00	1460/1497 (97%)
EPI315101	A/mallard/PT/27972-B139/2007 (A/H9N2) segment 5 (NP)	2560.6	0.000000e+00	1460/1497 (97%)
EPI270063	A/aquatic bird/India/NIV-17095/2007 (A/H11N1) segment 5 (NP)	2560.6	0.000000e+00	1460/1497 (97%)
EPI618599	A/mallard/Sweden/107688/2009 (A/H10N1) segment 5 (NP)	2555.0	0.000000e+00	1459/1497 (97%)
EPI602410	A/duck/Jiangxi/33763/2013 (A/H10N3) segment 5 (NP)	2555.0	0.000000e+00	1459/1497 (97%)
EPI602350	A/duck/Jiangxi/33777/2013 (A/H10N3) segment 5 (NP)	2555.0	0.000000e+00	1459/1497 (97%)
EPI470443	A/wild waterfowl/Hong Kong/MPM3375/2011 (A/H7N6) segment 5 (NP)	2555.0	0.000000e+00	1459/1497 (97%)
EPI470442	A/wild waterfowl/Hong Kong/MPL1006/2011 (A/H7N7) segment 5 (NP)	2555.0	0.000000e+00	1459/1497 (97%)
EPI470441	A/wild waterfowl/Hong Kong/MPM2121/2011 (A/H7N7) segment 5 (NP)	2555.0	0.000000e+00	1459/1497 (97%)
EPI470440	A/wild waterfowl/Hong Kong/MPL705/2011 (A/H7N7) segment 5 (NP)	2555.0	0.000000e+00	1459/1497 (97%)
EPI470438	A/common teal/Hong Kong/MPL634/2011 (A/H7N7) segment 5 (NP)	2555.0	0.000000e+00	1459/1497 (97%)
EPI470436	A/common teal/Hong Kong/MPM1645/2011 (A/H7N1) segment 5 (NP)	2555.0	0.000000e+00	1459/1497 (97%)
EPI470411	A/northern shoveler/Hong Kong/MPK276/2009 (A/H11N9) segment 5 (NP)	2555.0	0.000000e+00	1459/1497 (97%)
EPI363536	A/duck/Guizhou/2773/2006 (A/H6N2) segment 5 (NP)	2555.0	0.000000e+00	1460/1498 (97%)
EPI602448	A/duck/Jiangxi/33665/2013 (A/H10N3) segment 5 (NP)	2549.5	0.000000e+00	1458/1497 (97%)
EPI602441	A/duck/Jiangxi/33663/2013 (A/H10N3) segment 5 (NP)	2549.5	0.000000e+00	1458/1497 (97%)
EPI602403	A/duck/Jiangxi/33759/2013 (A/H10N3) segment 5 (NP)	2549.5	0.000000e+00	1458/1497 (97%)
EPI602396	A/duck/Jiangxi/33757/2013 (A/H10N3) segment 5 (NP)	2549.5	0.000000e+00	1458/1497 (97%)
EPI602389	A/duck/Jiangxi/33753/2013 (A/H10N3) segment 5 (NP)	2549.5	0.000000e+00	1458/1497 (97%)
EPI602382	A/duck/Jiangxi/33713/2013 (A/H10N3) segment 5 (NP)	2549.5	0.000000e+00	1458/1497 (97%)
EPI602375	A/duck/Jiangxi/33699/2013 (A/H10N3) segment 5 (NP)	2549.5	0.000000e+00	1458/1497 (97%)
EPI602368	A/duck/Jiangxi/33695/2013 (A/H10N3) segment 5 (NP)	2549.5	0.000000e+00	1458/1497 (97%)
EPI602343	A/duck/Jiangxi/33775/2013 (A/H10N3) segment 5 (NP)	2549.5	0.000000e+00	1458/1497 (97%)
EPI602336	A/duck/Jiangxi/33769/2013 (A/H10N3) segment 5 (NP)	2549.5	0.000000e+00	1458/1497 (97%)
EPI602329	A/duck/Jiangxi/33765/2013 (A/H10N3) segment 5 (NP)	2549.5	0.000000e+00	1458/1497 (97%)
EPI599873	A/duck/Jiangxi/33778/2013 (A/H10N3) segment 5 (NP)	2549.5	0.000000e+00	1458/1497 (97%)
EPI599866	A/duck/Jiangxi/33747/2013 (A/H10N3) segment 5 (NP)	2549.5	0.000000e+00	1458/1497 (97%)
EPI599859	A/duck/Jiangxi/33744/2013 (A/H10N3) segment 5 (NP)	2549.5	0.000000e+00	1458/1497 (97%)
EPI599852	A/duck/Jiangxi/33701/2013 (A/H10N3) segment 5 (NP)	2549.5	0.000000e+00	1458/1497 (97%)
EPI599845	A/duck/Jiangxi/33653/2013 (A/H10N3) segment 5 (NP)	2549.5	0.000000e+00	1458/1497 (97%)
EPI599838	A/duck/Jiangxi/33641/2013 (A/H10N3) segment 5 (NP)	2549.5	0.000000e+00	1458/1497 (97%)
EPI599831	A/duck/Jiangxi/33629/2013 (A/H10N3) segment 5 (NP)	2549.5	0.000000e+00	1458/1497 (97%)
EPI510826	A/duck/Taiwan/11254/2013 (A/H5N2) segment 5 (NP)	2549.5	0.000000e+00	1458/1497 (97%)
EPI510819	A/duck/Taiwan/11213/2013 (A/H5N2) segment 5 (NP)	2549.5	0.000000e+00	1458/1497 (97%)
EPI470439	A/common teal/Hong Kong/MPM1740/2011 (A/H7N7) segment 5 (NP)	2549.5	0.000000e+00	1458/1497 (97%)
EPI470415	A/duck/Yunnan/87/2007 (A/H7N6) segment 5 (NP)	2549.5	0.000000e+00	1458/1497 (97%)
EPI602434	A/duck/Jiangxi/33651/2013 (A/H10N3) segment 5 (NP)	2547.7	0.000000e+00	1457/1497 (97%)
EPI602427	A/duck/Jiangxi/33637/2013 (A/H10N3) segment 5 (NP)	2544.0	0.000000e+00	1457/1497 (97%)
EPI588953	A/goose/Taiwan/a015/2015 (A/H5N8) segment 5 (NP)	2544.0	0.000000e+00	1457/1497 (97%)
EPI584059	A/environment/Kagoshima/KU-ngr-F/2012(H4N8) (A/H4N8) segment 5 (NP)	2544.0	0.000000e+00	1457/1497 (97%)
EPI470431	A/wild waterfowl/Hong Kong/MPL696/2011 (A/H2N9) segment 5 (NP)	2544.0	0.000000e+00	1457/1497 (97%)
EPI470378	A/duck/Jiangxi/21669/2009 (A/H7N7) segment 5 (NP)	2544.0	0.000000e+00	1457/1497 (97%)
EPI601684	A/duck/Jiangxi/3961/2013 (A/H0) segment 5 (NP)	2542.1	0.000000e+00	1442/1475 (97%)
EPI316769	A/mallard/Czech Republic/13579-84K/2010 (A/H4N6) segment 5 (NP)	2540.3	0.000000e+00	1456/1497 (97%)
EPI599880	A/duck/Jiangxi/33779/2013 (A/H10N3) segment 5 (NP)	2538.4	0.000000e+00	1456/1497 (97%)
EPI584047	A/environment/Kagoshima/KU-ngr-C/2012(H3N8) (A/H3N8) segment 5 (NP)	2538.4	0.000000e+00	1456/1497 (97%)
EPI470380	A/duck/Jiangxi/23008/2009 (A/H7N7) segment 5 (NP)	2538.4	0.000000e+00	1456/1497 (97%)
EPI268706	A/mallard/Jiangxi/7376/2003 (A/H6N2) segment 5 (NP)	2538.4	0.000000e+00	1457/1498 (97%)
EPI222088	A/garganey/Altai/1213/2007 (A/H5N2) segment 5 (NP)	2538.4	0.000000e+00	1457/1498 (97%)
EPI222048	A/gadwall/Altai/1202/2007 (A/H5N2) segment 5 (NP)	2538.4	0.000000e+00	1457/1498 (97%)
EPI600153	A/migratory duck/Jiangxi/31577/2013 (A/H10N5) segment 5 (NP)	2532.9	0.000000e+00	1455/1497 (97%)
EPI617983	A/mallard/Republic of Georgia/3/2011 (A/H3N8) segment 5 (NP)	2527.3	0.000000e+00	1454/1497 (97%)
EPI506050	A/duck/Moscow/4182/2010 (A/H5N3) segment 5 (NP)	2527.3	0.000000e+00	1454/1497 (97%)
EPI372497	A/mallard/Ukraine/05842-NAMRU3/2006 (A/H3N8) segment 5 (NP)	2527.3	0.000000e+00	1455/1498 (97%)
EPI168528	A/mute swan/Aktau/1460/2006 (A/H5N1) segment 5 (NP)	2527.3	0.000000e+00	1430/1461 (97%)
EPI316865	A/mallard/Czech Republic/14924-1/2007 (A/H6N5) segment 5 (NP)	2523.6	0.000000e+00	1453/1497 (97%)
EPI387852	A/wild bird/Korea/A02/2011 (A/H10N4) segment 5 (NP)	2521.8	0.000000e+00	1454/1498 (97%)
EPI441047	A/duck/Vietnam/LBM185/2012 (A/H6N6) segment 5 (NP)	2516.3	0.000000e+00	1452/1497 (96%)
EPI387853	A/wild bird/Korea/A01/2011 (A/H10N4) segment 5 (NP)	2516.3	0.000000e+00	1453/1498 (96%)

niman · January 15, 2016

Descriptions

Segment-ID	Name	Score	E-Value	Identity
EPI687191	A/chicken/Scotland/532/2016 (A/H5N1) segment 8 (NS)	1544.9	0.000000e+00	838/838 (100%)
EPI623942	A/chicken/England/26352/2015 (A/H7N7) segment 8 (NS)	1484.0	0.000000e+00	826/838 (98%)
EPI514602	A/mallard/Sweden/50108/2006 (A/H4N6) segment 8 (NS)	1478.4	0.000000e+00	825/838 (98%)
EPI372498	A/mallard/Ukraine/05842-NAMRU3/2006 (A/H3N8) segment 8 (NS)	1478.4	0.000000e+00	825/838 (98%)
EPI367577	A/mallard/Czech Republic/14333-1K/2011 (A/H3N8) segment 8 (NS)	1478.4	0.000000e+00	825/838 (98%)
EPI514948	A/mallard/Sweden/52405/2006 (A/H0) segment 8 (NS)	1467.4	0.000000e+00	824/839 (98%)
EPI475943	A/great black-backed gull/Iceland/1110/2011 (A/H5N2) segment 8 (NS)	1467.4	0.000000e+00	823/838 (98%)
EPI513751	A/mallard/Sweden/79978/2008 (A/H4N6) segment 8 (NS)	1461.8	0.000000e+00	823/839 (98%)
EPI485625	A/Eurasian wigeon/Netherlands/4/2000 (A/H6N2) segment 8 (NS)	1456.3	0.000000e+00	822/839 (97%)
EPI624440	A/chicken/Italy/473/1999 (A/H7N1) segment 8 (NS)	1450.7	0.000000e+00	821/839 (97%)
EPI618642	A/mallard/Sweden/366/2002 (A/H11N9) segment 8 (NS)	1450.7	0.000000e+00	821/839 (97%)
EPI499903	A/turkey/Italy/472/1999 (A/H7N1) segment 8 (NS)	1450.7	0.000000e+00	821/839 (97%)
EPI485622	A/mallard/Sweden/16/2002 (A/H12N9) segment 8 (NS)	1450.7	0.000000e+00	821/839 (97%)
EPI464812	A/turkey/Italy/472/1999 (A/H7N1) segment 8 (NS)	1450.7	0.000000e+00	821/839 (97%)
EPI284361	A/mallard/Czech Republic/15902-17K/2009 (A/H6N2) segment 8 (NS)	1450.7	0.000000e+00	821/839 (97%)
EPI238668	A/turkey/Italy/977/1999 (A/H7N1) segment 8 (NS)	1450.7	0.000000e+00	821/839 (97%)
EPI89829	A/turkey/Italy/3620/1999 (A/H7N1) segment 8 (NS)	1450.7	0.000000e+00	821/839 (97%)
EPI69224	A/turkey/Italy/1265/99 (A/H7N1) segment 8 (NS)	1450.7	0.000000e+00	821/839 (97%)
EPI68189	A/turkey/Italy/977/99 (A/H7N1) segment 8 (NS)	1450.7	0.000000e+00	821/839 (97%)
EPI505522	A/chicken/Italy/1081/1999 (A/H7N1) segment 8 (NS)	1447.0	0.000000e+00	820/839 (97%)
EPI525965	A/eurasian wigeon/Mongolia/340V/2009 (A/H4N6) segment 8 (NS)	1445.2	0.000000e+00	820/839 (97%)
EPI505571	A/turkey/Italy/1555/1999 (A/H7N1) segment 8 (NS)	1445.2	0.000000e+00	820/839 (97%)
EPI505542	A/turkey/Italy/1085/1999 (A/H7N1) segment 8 (NS)	1445.2	0.000000e+00	820/839 (97%)
EPI505529	A/turkey/Italy/1083/1999 (A/H7N1) segment 8 (NS)	1445.2	0.000000e+00	820/839 (97%)
EPI387548	A/white-fronted goose/Mongolia/1-125/2008 (A/H3N8) segment 8 (NS)	1445.2	0.000000e+00	820/839 (97%)
EPI327348	A/turkey/Italy/1067/1999 (A/H7N1) segment 8 (NS)	1445.2	0.000000e+00	820/839 (97%)
EPI309095	A/spur-winged goose/Nigeria/210/2008 (A/H5N2) segment 8 (NS)	1445.2	0.000000e+00	817/834 (97%)
EPI306425	A/shoveler/Koymor/118/2009 (A/H3) segment 8 (NS)	1445.2	0.000000e+00	820/839 (97%)
EPI238411	A/chicken/Italy/1067/1999 (A/H7N1) segment 8 (NS)	1445.2	0.000000e+00	820/839 (97%)
EPI89841	A/turkey/Italy/4169/99 (A/H7N1) segment 8 (NS)	1445.2	0.000000e+00	820/839 (97%)
EPI63324	A/chicken/Italy/1082/1999 (A/H7N1) segment 8 (NS)	1445.2	0.000000e+00	820/839 (97%)
EPI505579	A/turkey/Italy/2716/1999 (A/H7N1) segment 8 (NS)	1441.5	0.000000e+00	819/839 (97%)
EPI617999	A/garganey/Republic of Georgia/1/2011 (A/H4N2) segment 8 (NS)	1439.7	0.000000e+00	819/839 (97%)
EPI514670	A/mallard/Sweden/7582/2003 (A/H4N6) segment 8 (NS)	1439.7	0.000000e+00	818/838 (97%)
EPI438359	A/chicken/Italy/1279/1999 (A/H7N1) segment 8 (NS)	1439.7	0.000000e+00	819/839 (97%)
EPI377890	A/mallard/Sweden/72/2005 (A/H2N9) segment 8 (NS)	1439.7	0.000000e+00	818/838 (97%)
EPI372514	A/garganey/Ukraine/05839-NAMRU3/2006 (A/H14N6) segment 8 (NS)	1439.7	0.000000e+00	818/838 (97%)
EPI327341	A/chicken/Italy/1391/1999 (A/H7N1) segment 8 (NS)	1439.7	0.000000e+00	819/839 (97%)
EPI251609	A/common teal/Netherlands/9/2000 (A/H11N9) segment 8 (NS)	1439.7	0.000000e+00	819/839 (97%)
EPI244104	A/goose/Germany/R3160/09 (A/H5N2) segment 8 (NS)	1439.7	0.000000e+00	819/839 (97%)
EPI238621	A/turkey/Italy/2732/1999 (A/H7N1) segment 8 (NS)	1439.7	0.000000e+00	819/839 (97%)
EPI238300	A/turkey/Italy/2379/2000 (A/H7N1) segment 8 (NS)	1439.7	0.000000e+00	819/839 (97%)
EPI235568	A/Anas angustirostris/Astrakhan/3088/2002 (A/H4N8) segment 8 (NS)	1439.7	0.000000e+00	820/840 (97%)
EPI69205	A/turkey/Italy/2732/1999 (A/H7N1) segment 8 (NS)	1439.7	0.000000e+00	819/839 (97%)
EPI69186	A/turkey/Italy/2715/99 (A/H7N1) segment 8 (NS)	1439.7	0.000000e+00	819/839 (97%)
EPI69148	A/turkey/Italy/3489/99 (A/H7N1) segment 8 (NS)	1439.7	0.000000e+00	819/839 (97%)
EPI68512	A/turkey/Italy/3488/1999 (A/H7N1) segment 8 (NS)	1439.7	0.000000e+00	819/839 (97%)
EPI68493	A/turkey/Italy/3185/99 (A/H7N1) segment 8 (NS)	1439.7	0.000000e+00	819/839 (97%)
EPI505543	A/turkey/Italy/1086/1999 (A/H7N1) segment 8 (NS)	1436.0	0.000000e+00	818/839 (97%)
EPI619108	A/mallard/Sweden/99377/2009 (A/H8N4) segment 8 (NS)	1434.1	0.000000e+00	818/839 (97%)
EPI619006	A/mallard/Sweden/770/2002 (A/H10N6) segment 8 (NS)	1434.1	0.000000e+00	818/839 (97%)
EPI618993	A/mallard/Sweden/768/2002 (A/H10N6) segment 8 (NS)	1434.1	0.000000e+00	818/839 (97%)
EPI618977	A/mallard/Sweden/766/2002 (A/H0) segment 8 (NS)	1434.1	0.000000e+00	818/839 (97%)
EPI618491	A/mallard/Sweden/101589/2009 (A/H11N9) segment 8 (NS)	1434.1	0.000000e+00	818/839 (97%)
EPI525913	A/ruddy shelduck/Mongolia/590C2/2009 (A/H11N2) segment 8 (NS)	1434.1	0.000000e+00	818/839 (97%)
EPI514687	A/mallard/Sweden/5724/2005 (A/H4N2) segment 8 (NS)	1434.1	0.000000e+00	817/838 (97%)
EPI507722	A/turkey/Italy/4749/1999 (A/H7N1) segment 8 (NS)	1434.1	0.000000e+00	817/838 (97%)
EPI485680	A/mallard/Sweden/21/2002 (A/H5N2) segment 8 (NS)	1434.1	0.000000e+00	818/839 (97%)
EPI485537	A/mallard/Sweden/43/2002 (A/H10N5) segment 8 (NS)	1434.1	0.000000e+00	818/839 (97%)
EPI433416	A/mallard/Czech Republic/15962-4T/2010 (A/H6N9) segment 8 (NS)	1434.1	0.000000e+00	818/839 (97%)
EPI433409	A/mallard/Czech Republic/15902-25K/2009 (A/H11N9) segment 8 (NS)	1434.1	0.000000e+00	818/839 (97%)
EPI433390	A/mallard/Czech Republic/15902-18K/2009 (A/H6N9) segment 8 (NS)	1434.1	0.000000e+00	818/839 (97%)
EPI367601	A/mallard/Czech Republic/15962-1T/2010 (A/H6N9) segment 8 (NS)	1434.1	0.000000e+00	818/839 (97%)
EPI314712	A/mallard/Czech Republic/15902-18K/2009 (A/H11N9) segment 8 (NS)	1434.1	0.000000e+00	818/839 (97%)
EPI309096	A/spur-winged goose/Nigeria/226/2008 (A/H5N2) segment 8 (NS)	1434.1	0.000000e+00	819/840 (97%)
EPI309094	A/spur-winged goose/Nigeria/2/2008 (A/H5N2) segment 8 (NS)	1434.1	0.000000e+00	815/834 (97%)
EPI251709	A/mallard/Sweden/41/2002 (A/H10N6) segment 8 (NS)	1434.1	0.000000e+00	818/839 (97%)
EPI238637	A/turkey/Italy/3675/1999 (A/H7N1) segment 8 (NS)	1434.1	0.000000e+00	818/839 (97%)
EPI238629	A/turkey/Italy/3283/1999 (A/H7N1) segment 8 (NS)	1434.1	0.000000e+00	818/839 (97%)
EPI236182	A/mallard/Sweden/21/2002 (A/H5N2) segment 8 (NS)	1434.1	0.000000e+00	818/839 (97%)
EPI182077	A/common teal/Netherlands/2/2005 (A/H6N8) segment 8 (NS)	1434.1	0.000000e+00	817/838 (97%)
EPI69129	A/turkey/Italy/4301/1999 (A/H7N1) segment 8 (NS)	1434.1	0.000000e+00	818/839 (97%)
EPI68474	A/turkey/Italy/4295/1999 (A/H7N1) segment 8 (NS)	1434.1	0.000000e+00	818/839 (97%)
EPI63305	A/quail/Italy/396/2000 (A/H7N1) segment 8 (NS)	1434.1	0.000000e+00	817/838 (97%)
EPI63267	A/chicken/Italy/4746/1999 (A/H7N1) segment 8 (NS)	1434.1	0.000000e+00	818/839 (97%)
EPI60414	A/turkey/Italy/3675/99 (A/H7N1) segment 8 (NS)	1434.1	0.000000e+00	818/839 (97%)
EPI619115	A/mallard/Sweden/101165/2009 (A/H8N4) segment 8 (NS)	1428.6	0.000000e+00	817/839 (97%)
EPI618604	A/mallard/Sweden/50968/2006 (A/H12N5) segment 8 (NS)	1428.6	0.000000e+00	818/840 (97%)
EPI514864	A/mallard/Sweden/906/2002 (A/H4N2) segment 8 (NS)	1428.6	0.000000e+00	818/840 (97%)
EPI507730	A/turkey/Italy/4756/1999 (A/H7N1) segment 8 (NS)	1428.6	0.000000e+00	817/839 (97%)
EPI507714	A/turkey/Italy/4827/1999 (A/H7N1) segment 8 (NS)	1428.6	0.000000e+00	817/839 (97%)
EPI507698	A/turkey/Italy/4618/1999 (A/H7N1) segment 8 (NS)	1428.6	0.000000e+00	817/839 (97%)
EPI485840	A/mallard/Netherlands/1/2001 (A/H6N1) segment 8 (NS)	1428.6	0.000000e+00	817/839 (97%)
EPI364119	A/duck/Fujian/3264/2007 (A/H6N6) segment 8 (NS)	1428.6	0.000000e+00	818/840 (97%)
EPI238660	A/turkey/Italy/4580/1999 (A/H7N1) segment 8 (NS)	1428.6	0.000000e+00	817/839 (97%)
EPI69110	A/turkey/Italy/4617/1999 (A/H7N1) segment 8 (NS)	1428.6	0.000000e+00	817/839 (97%)
EPI69072	A/chicken/Italy/4789/1999 (A/H7N1) segment 8 (NS)	1428.6	0.000000e+00	817/839 (97%)
EPI69053	A/quail/Italy/4992/1999 (A/H7N1) segment 8 (NS)	1428.6	0.000000e+00	817/839 (97%)
EPI68436	A/turkey/Italy/4708/1999 (A/H7N1) segment 8 (NS)	1428.6	0.000000e+00	817/839 (97%)
EPI68227	A/turkey/Italy/1084/2000 (A/H7N1) segment 8 (NS)	1428.6	0.000000e+00	817/839 (97%)
EPI60756	A/duck/Italy/551/2000 (A/H7N1) segment 8 (NS)	1428.6	0.000000e+00	817/839 (97%)
EPI60395	A/turkey/Italy/4580/99 (A/H7N1) segment 8 (NS)	1428.6	0.000000e+00	817/839 (97%)
EPI505690	A/chicken/Italy/161/2000 (A/H7N1) segment 8 (NS)	1424.9	0.000000e+00	815/838 (97%)
EPI505631	A/turkey/Italy/5005/1999 (A/H7N1) segment 8 (NS)	1424.9	0.000000e+00	812/833 (97%)
EPI118226	A/mallard/Italy/36/2002 (A/H5N3) segment 8 (NS)	1424.9	0.000000e+00	811/831 (97%)
EPI618655	A/mallard/Sweden/418/2002 (A/H11N9) segment 8 (NS)	1423.0	0.000000e+00	816/839 (97%)
EPI514847	A/mallard/Sweden/1883/2003 (A/H4N3) segment 8 (NS)	1423.0	0.000000e+00	816/839 (97%)
EPI514677	A/mallard/Sweden/7925/2005 (A/H4N6) segment 8 (NS)	1423.0	0.000000e+00	816/839 (97%)
EPI507706	A/turkey/Italy/4828/1999 (A/H7N1) segment 8 (NS)	1423.0	0.000000e+00	816/839 (97%)
EPI505919	A/chicken/Italy/2021/2000 (A/H7N1) segment 8 (NS)	1423.0	0.000000e+00	816/839 (97%)

niman · January 15, 2016

Information received on 13/01/2016 from Dr Nigel Gibbens, Chief Veterinary Officer, Department for Environment, Food and Rural Affairs, Department for Environment, Food and Rural Affairs, LONDON, United Kingdom

Summary

Report type	Immediate notification
Date of start of the event	08/01/2016
Date of confirmation of the event	13/01/2016
Report date	13/01/2016
Date submitted to OIE	13/01/2016
Reason for notification	Reoccurrence of a listed disease
Date of previous occurrence	06/02/2015
Manifestation of disease	Clinical disease
Causal agent	Low pathogenic avian influenza virus
Serotype	H5N1
Nature of diagnosis	Clinical, Laboratory (advanced)
This event pertains to	a defined zone within the country

New outbreaks (1)

Outbreak 1 (AIV 2016/01)

Townhill, Parish of Dunfermline, Fife, SCOTLAND

Date of start of the outbreak

08/01/2016

Outbreak status

Continuing (or date resolved not provided)

Epidemiological unit

Farm

Affected animals

Species	Susceptible	Cases	Deaths	Destroyed	Slaughtered
Birds	40000				0

Affected population

Flock of approximately 40,000 57-week-old housed broiler breeder hens.

Summary of outbreaks

Total outbreaks: 1

Total animals affected

Species	Susceptible	Cases	Deaths	Destroyed	Slaughtered
Birds	40000	**			0

Outbreak statistics

Species	Apparent morbidity rate	Apparent mortality rate	Apparent case fatality rate	Proportion susceptible animals lost*
Birds	**	**	**	**

*Removed from the susceptible population through death, destruction and/or slaughter

**Not calculated because of missing information

Epidemiology

Source of the outbreak(s) or origin of infection	Unknown or inconclusive
Epidemiological comments	The epidemiological investigation has started and disease control measures applied. Updates will be provided in the weekly reports as further information becomes available.

Control measures

Measures applied	Movement control inside the country Screening Traceability Quarantine Surveillance outside containment and/or protection zone Surveillance within containment and/or protection zone Zoning Vaccination prohibited No treatment of affected animals
Measures to be applied	Disinfection / Disinfestation Stamping out Official destruction of animal products Official disposal of carcasses, by-products and waste

Diagnostic test results

Laboratory name and type	Species	Test	Test date	Result
Animal and Plant Health Agency (APHA), Weybridge (OIE Reference Laboratory)	Birds	haemagglutination inhibition test (HIT)	10/01/2016	Positive
Animal and Plant Health Agency (APHA), Weybridge (OIE Reference Laboratory)	Birds	intravenous pathogenicity index (IVPI) test		Pending
Animal and Plant Health Agency (APHA), Weybridge (OIE Reference Laboratory)	Birds	neuraminidase inhibition assay		Pending
Animal and Plant Health Agency (APHA), Weybridge (OIE Reference Laboratory)	Birds	nucleotide sequencing	11/01/2016	Positive
Animal and Plant Health Agency (APHA), Weybridge (OIE Reference Laboratory)	Birds	real-time reverse transcriptase/polymerase chain reaction (RRT-PCR)	10/01/2016	Positive
Animal and Plant Health Agency (APHA), Weybridge (OIE Reference Laboratory)	Birds	virus isolation	13/01/2016	Positive

Future Reporting

The event is continuing. Weekly follow-up reports will be submitted.

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2016 Low Path H5N1 In Scotland

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