niman Posted January 15, 2016 Report Share Posted January 15, 2016 Institut Pasteur de la Guyane in French Guiana has released a full 2015 Zika sequence from Suriname. Link to comment Share on other sites More sharing options...
niman Posted January 15, 2016 Author Report Share Posted January 15, 2016 LOCUS KU312312 10374 bp RNA linear VRL 13-JAN-2016 DEFINITION Zika virus isolate Z1106033 polyprotein gene, complete cds. ACCESSION KU312312 VERSION KU312312.1 GI:973447404 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus; Spondweni virus group. REFERENCE 1 (bases 1 to 10374) AUTHORS Enfissi,A., Codrington,J., Roosblad,J., Kazanji,M. and Rousset,D. TITLE Zika virus genome from the Americas JOURNAL Lancet (2016) In press REMARK Publication Status: Available-Online prior to print REFERENCE 2 (bases 1 to 10374) AUTHORS Enfissi,A. and Rousset,D. TITLE Direct Submission JOURNAL Submitted (16-DEC-2015) Laboratoire de Virologie, Centre National de Reference des Arbovirus, Laboratoire associe, Institut Pasteur de la Guyane, Avenue Pasteur, Cayenne 97300, French Guiana COMMENT ##Assembly-Data-START## Assembly Method :: CLC Main Workbench v. 6.9 Beta 4 Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10374 /organism="Zika virus" /mol_type="genomic RNA" /isolate="Z1106033" /isolation_source="serum" /host="Homo sapiens" /db_xref="taxon:64320" /country="Suriname" /collection_date="02-Oct-2015" CDS 41..10312 /codon_start=1 /product="polyprotein" /protein_id="ALX35659.1" /db_xref="GI:973447405" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHTCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNAKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSMVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST QVRYLGEEGSTPGVL" ORIGIN 1 acaggtttta ttttggattt ggaaacgaga gtttctggtc atgaaaaacc caaaaaagaa 61 atccggagga ttccggattg tcaatatgct aaaacgcgga gtagcccgtg tgagcccctt 121 tgggggcttg aagaggctgc cagccggact tctgctgggt catgggccca tcaggatggt 181 cttggcgatt ctagcctttt tgagattcac ggcaatcaag ccatcactgg gtctcatcaa 241 tagatggggt tcagtgggga aaaaagaggc tatggaaata ataaagaagt tcaagaaaga 301 tctggctgcc atgctgagaa taatcaatgc taggaaggag aagaagagac gaggcgcaga 361 tactagtgtc ggaattgttg gcctcctgct gaccacagct atggcagcgg aggtcactag 421 acgtgggagt gcatactata tgtacttgga cagaaacgat gctggggagg ccatatcttt 481 tccaaccaca ttggggatga ataagtgtta tatacagatc atggatcttg gacacacgtg 541 tgatgccacc atgagctatg aatgccctat gctggatgag ggggtggaac cagatgacgt 601 cgattgttgg tgcaacacga cgtcaacttg ggttgtgtac ggaacctgcc atcacaaaaa 661 aggtgaagca cggagatcta gaagagctgt gacgctcccc tcccattcca ctaggaagct 721 gcaaacgcgg tcgcaaacct ggttggaatc aagagaatac acaaagcact tgattagagt 781 cgaaaattgg atattcagga accctggctt cgcgttagca gcagctgcca tcgcttggct 841 tttgggaagc tcaacgagcc aaaaagtcat atacttggtc atgatactgc tgattgcccc 901 ggcatacagc atcaggtgca taggagtcag caatagggac tttgtggaag gtatgtcagg 961 tgggacttgg gttgatgttg tcttggaaca tggaggttgt gtcactgtaa tggcacagga 1021 caaaccgact gtcgacatag agctggttac aacaacagtc agcaacatgg cggaggtaag 1081 atcctactgc tatgaggcat caatatcaga catggcttcg gacagccgct gcccaacaca 1141 aggtgaagcc taccttgaca agcaatcaga cactcaatat gtctgcaaaa gaacgttagt 1201 ggacagaggc tggggaaatg gatgtggact ttttggcaaa gggagcctgg tgacatgcgc 1261 taagtttgca tgctccaaga aaatgaccgg gaagagcatc cagccagaga atctggagta 1321 ccggataatg ctgtcagttc atggctccca gcacagtggg atgatcgtta atgacacagg 1381 acatgaaact gatgagaata gagcgaaagt tgagataacg cccaattcac caagagccga 1441 agccaccctg ggggggtttg gaagcctagg acttgattgt gaaccgagga caggccttga 1501 cttttcagat ttgtattact tgactatgaa taacaagcac tggctggttc acaaggagtg 1561 gttccacgac attccattac cttggcacgc tggggcagac accggaactc cacactggaa 1621 caacaaagaa gcactggtag agttcaagga cgcacatgcc aaaaggcaaa ctgtcgtggt 1681 tctagggagt caagaaggag cagttcacac ggcccttgct ggagctctgg aggctgagat 1741 ggatggtgca aagggaaggc tgtcctctgg ccacttgaaa tgtcgcctga aaatggataa 1801 acttagattg aagggcgtgt catactcctt gtgtactgca gcgttcacat tcaccaagat 1861 cccggctgaa acactgcacg ggacagtcac agtggaggta cagtacgcag ggacagatgg 1921 accttgcaag gttccagctc agatggcggt ggacatgcaa actctgaccc cagttgggag 1981 gttgataacc gctaaccccg taatcactga aagcactgag aactctaaga tgatgctgga 2041 acttgatcca ccatttgggg actcttacat tgtcatagga gtcggggaga agaagatcac 2101 ccaccactgg cacaggagtg gcagcaccat tggaaaagca tttgaagcca ctgtgagagg 2161 tgccaagaga atggcagtct tgggagacac agcctgggac tttggatcag ttggaggcgc 2221 tctcaactca ttgggcaagg gcatccatca aatctttgga gcagctttca aatcattgtt 2281 tggaggaatg tcctggttct cacaaattct cattggaacg ttgctgatgt ggttgggtct 2341 gaacgcaaag aatggatcta tttcccttat gtgcttggcc ttagggggag tgttgatctt 2401 cttatccaca gccgtctctg ctgatgtggg gtgctcggtg gacttctcaa agaaggagac 2461 gagatgcggt acaggggtgt tcgtctataa cgacgttgaa gcctggaggg acaggtacaa 2521 gtaccatcct gactcccccc gtagattggc agcagcagtc aagcaagcct gggaagatgg 2581 tatctgcggg atctcctctg tttcaagaat ggaaaacatc atgtggagat cagtagaagg 2641 ggagctcaac gcaatcctgg aagagaatgg agttcaactg acggtcgttg tgggatctgt 2701 aaaaaacccc atgtggagag gtccacagag attgcccgtg cctgtgaacg agctgcccca 2761 cggctggaag gcttggggga aatcgtactt cgtcagagca gcaaagacaa ataacagctt 2821 tgtcgtggat ggtgacacac tgaaggaatg cccactcaaa catagagcat ggaacagctt 2881 tcttgtggag gatcatgggt tcggggtatt tcacactagt gtctggctca aggttagaga 2941 agattattca ttagagtgtg atccagccgt tattggaaca gctgttaagg gaaaggaggc 3001 tgtacacagt gatctaggct actggattga gagtgagaag aatgacacat ggaggctgaa 3061 gagggcccat ctgatcgaga tgaaaacatg tgaatggcca aagtcccaca cattgtggac 3121 agatggaata gaagagagtg atctgatcat acccaagtct ttagctgggc cactcagcca 3181 tcacaatacc agagagggct acaggaccca aatgaaaggg ccatggcaca gtgaagagct 3241 tgaaattcgg tttgaggaat gcccaggcac taaggtccac gtggaggaaa catgtggaac 3301 gagaggacca tctctgagat caaccactgc aagcggaagg gtgatcgagg aatggtgctg 3361 cagggagtgc acaatgcccc cactgtcgtt ccgggctaaa gatggctgtt ggtatggaat 3421 ggagataagg cccaggaaag aaccagaaag caacttagta aggtcaatgg tgactgcagg 3481 atcaactgat cacatggacc acttctccct tggagtgctt gtgattctgc tcatggtgca 3541 ggaagggttg aagaagagaa tgaccacaaa gatcatcata agcacatcaa tggcagtgct 3601 ggtagctatg atcctgggag gattttcaat gagtgacctg gctaagcttg caattttgat 3661 gggtgccacc ttcgcggaaa tgaacactgg aggagatgta gctcatctgg cgctgatagc 3721 ggcattcaaa gtcagaccag cgttgctggt atctttcatc ttcagagcta attggacacc 3781 ccgtgaaagc atgctgctgg ccttggcctc gtgtcttttg caaactgcga tctccgcctt 3841 ggaaggcgac ctgatggttc tcatcaatgg ttttgctttg gcctggttgg caatacgagc 3901 gatggttgtt ccacgcactg ataacatcac cttggcaatc ctggctgctc tgacaccact 3961 ggcccggggc acactgcttg tggcgtggag agcaggcctt gctacttgcg gggggtttat 4021 gctcctctct ctgaagggaa aaggcagtgt gaagaagaac ttaccatttg tcatggccct 4081 gggactaacc gctgtgaggc tggtcgaccc catcaacgtg gtgggactgc tgttgctcac 4141 aaggagtggg aagcggagct ggccccctag cgaagtactc acagctgttg gcctgatatg 4201 cgcattggct ggagggttcg ccaaggcaga tatagagatg gctgggccca tggccgcggt 4261 cggtctgcta attgtcagtt acgtggtctc aggaaagagt gtggacatgt acattgaaag 4321 agcaggtgac atcacatggg aaaaagatgc ggaagtcact ggaaacagtc cccggctcga 4381 tgtggcgcta gatgagagtg gtgatttctc cctggtggag gatgacggtc cccccatgag 4441 agagatcata ctcaaggtgg tcctgatgac catctgtggc atgaacccaa tagccatacc 4501 ctttgcagct ggagcgtggt acgtatacgt gaagactgga aaaaggagtg gtgctctatg 4561 ggatgtgcct gctcccaagg aagtaaaaaa gggggagacc acagatggag tgtacagagt 4621 aatgactcgt agactgctag gttcaacaca agttggagtg ggagttatgc aagagggggt 4681 ctttcacact atgtggcacg tcacaaaagg atccgcgctg agaagcggtg aagggagact 4741 tgatccatac tggggagatg tcaagcagga tctggtgtca tactgtggtc catggaagct 4801 agatgccgcc tgggacgggc acagcgaggt gcagctcttg gccgtgcccc ccggagagag 4861 agcgaggaac atccagactc tgcccggaat atttaagaca aaggatgggg acattggagc 4921 ggttgcgctg gattacccag caggaacttc aggatctcct atcctagaca agtgtgggag 4981 agtgatagga ctttatggca atggggtcgt gatcaaaaat gggagttatg ttagtgccat 5041 cacccaaggg aggagggagg aagagactcc tgttgagtgc ttcgagcctt cgatgctgaa 5101 gaagaagcag ctaactgtct tagacttgca tcctggagct gggaaaacca ggagagttct 5161 tcctgaaata gtccgtgaag ccataaaaac aagactccgt actgtgatct tagctccaac 5221 cagggttgtc gctgctgaaa tggaggaggc ccttagaggg cttccagtgc gttatatgac 5281 aacagcagtc aatgtcaccc actctggaac agaaatcgtc gacttaatgt gccatgccac 5341 cttcacttcg cgtctactac agccaatcag agtccccaac tataatctgt atattatgga 5401 tgaggcccac ttcacagatc cctcaagtat agcagcaaga ggatacattt caacaagggt 5461 tgagatgggc gaggcggccg ccatcttcat gaccgccacg ccaccaggaa cccgtgacgc 5521 atttccggac tccaactcac caattatgga caccgaagtg gaagtcccag agagagcctg 5581 gagctcaggc tttgattggg tgacggatca ttctggaaaa acagtttggt ttgttccaag 5641 cgtgaggaac ggcaatgaga tcgcagcttg tctgacaaag gctggaaaac gggtcataca 5701 gctcagcaga aagacttttg agacagagtt ccagaaaaca aaacatcaag agtgggactt 5761 tgtcgtgaca actgacattt cagagatggg cgccaacttt aaagctgacc gtgtcataga 5821 ttccaggaga tgcctaaagc cggtcatact tgatggcgag agagtcattc tggctggacc 5881 catgcctgtc acacatgcca gcgctgccca gaggaggggg cgcataggca ggaatcccaa 5941 caaacctgga gatgagtatc tgtatggagg tgggtgcgca gagactgacg aagaccatgc 6001 acactggctt gaagcaagaa tgctccttga caatatttac ctccaagatg gcctcatagc 6061 ctcgctctat cgacctgagg ccgacaaagt agcagccatt gagggagagt tcaagcttag 6121 gacggagcaa aggaagacct ttgtggaact catgaaaaga ggagatcttc ctgtttggct 6181 ggcctatcag gttgcatctg ccggaataac ctacacagat agaagatggt gctttgatgg 6241 cacgaccaac aacaccataa tggaagacag tgtgccggca gaagtgtgga ccagacacgg 6301 agagaaaaga gtgctcaaac cgaggtggat ggacgccaga gtttgttcag atcatgcggc 6361 cctgaagtca ttcaaggagt ttgccgctgg gaaaagagga gcggcttttg gagtgatgga 6421 agccctggga acactgccag gacacatgac agagagattc caggaagcca ttgacaacct 6481 cgctgtgctc atgcgggcag agactggaag caggccttac aaagccgcgg cggcccaatt 6541 gccggagacc ctagagacca ttatgctttt ggggttgctg ggaacagtct cgctgggaat 6601 cttcttcgtc ttgatgagga acaagggcat agggaagatg ggctttggaa tggtgactct 6661 tggggccagc gcatggctca tgtggctctc ggaaattgag ccagccagaa ttgcatgtgt 6721 cctcattgtt gtgttcctat tgctggtggt gctcatacct gagccagaaa agcaaagatc 6781 tccccaggac aaccaaatgg caatcatcat catggtagca gtaggtcttc tgggcttgat 6841 taccgccaat gaactcggat ggttggagag aacaaagagt gacctaagcc atctaatggg 6901 aaggagagag gagggggcaa ccataggatt ctcaatggac attgacctgc ggccagcctc 6961 agcttgggcc atctatgctg ccttgacaac tttcattacc ccagccgtcc aacatgcagt 7021 gaccacctca tacaacaact actccttaat ggcgatggcc acgcaagctg gagtgttgtt 7081 tggtatgggc aaagggatgc cattctacgc atgggacttt ggagtcccgc tgctaatgat 7141 aggttgctac tcacaattaa cacccctgac cctaatagtg gccatcattt tgctcgtggc 7201 gcactacatg tacttgatcc cagggctgca ggcagcagct gcgcgtgctg cccagaagag 7261 aacggcagct ggcatcatga agaaccctgt tgtggatgga atagtggtga ctgacattga 7321 cacaatgaca attgaccccc aagtggagaa aaagatggga caggtgctac tcatagcagt 7381 agccgtctcc agcgccatac tgtcgcggac cgcctggggg tggggggagg ctggggccct 7441 gatcacagcc gcaacttcca ctttgtggga aggctctccg aacaagtact ggaactcctc 7501 tacagccact tcactgtgta acatttttag gggaagttac ttggctggag cttctctaat 7561 ctacacagta acaagaaacg ctggcttggt caagagacgt gggggtggaa caggagagac 7621 cctgggagag aaatggaagg cccgcttgaa ccagatgtcg gccctggagt tctactccta 7681 caaaaagtca ggcatcaccg aggtgtgcag agaagaggcc cgccgcgccc tcaaggacgg 7741 tgtggcaacg ggaggccatg ctgtgtcccg aggaagtgca aagctgagat ggttggtgga 7801 gcggggatac ctgcagccct atggaaaggt cattgatctt ggatgtggca gagggggctg 7861 gagttactac gccgccacca tccgcaaagt tcaagaagtg aaaggataca caaaaggagg 7921 ccctggtcat gaagaacccg tgttggtgca aagctatggg tggaacatag tccgtcttaa 7981 gagtggggtg gacgtctttc atatggcggc tgagccgtgt gacacgttgc tgtgtgacat 8041 aggtgagtca tcatctagtc ctgaagtgga agaagcacgg acgctcagag tcctctccat 8101 ggtgggggat tggcttgaaa aaagaccagg agccttttgt ataaaagtgt tgtgcccata 8161 caccagcact atgatggaaa ccctggagcg actgcagcgt aggtatgggg gaggactggt 8221 cagagtgcca ctctcccgca actctacaca tgagatgtac tgggtctctg gagcgaaaag 8281 caacaccata aaaagtgtgt ccaccacgag ccagctcctc ttggggcgca tggacgggcc 8341 taggaggcca gtgaaatatg aggaggatgt gaatctcggc tctggcacgc gggctgtggt 8401 aagctgcgct gaagctccca acatgaagat cattggtaac cgcattgaaa ggatccgcag 8461 tgagcacgcg gaaacgtggt tctttgacga gaaccaccca tataggacat gggcttacca 8521 tggaagctat gaggccccca cacaagggtc agcgtcctct ctaataaacg gggttgtcag 8581 gctcctgtca aaaccctggg atgtggtgac tggagtcaca ggaatagcca tgaccgacac 8641 cacaccgtat ggtcagcaaa gagttttcaa ggaaaaagtg gacactaggg tgccagaccc 8701 ccaagaaggc actcgtcagg ttatgagcat ggtctcttcc tggttgtgga aagagctagg 8761 caaacacaaa cggccacgag tctgtaccaa agaagagttc atcaacaagg ttcgtagcaa 8821 tgcagcatta ggggcaatat ttgaagagga aaaagagtgg aagactgcag tggaagctgt 8881 gaacgatcca aggttctggg ctctagtgga caaggaaaga gagcaccacc tgagaggaga 8941 gtgccagagt tgtgtgtaca acatgatggg aaaaagagaa aagaaacaag gggaatttgg 9001 aaaggccaag ggcagccgcg ccatctggta tatgtggcta ggggctagat ttctagagtt 9061 cgaagccctt ggattcttga acgaggatca ctggatgggg agagagaact caggaggtgg 9121 tgttgaaggg ctgggattac aaagactcgg atatgtccta gaagagatga gtcgtatacc 9181 aggaggaagg atgtatgcag atgacactgc tggctgggac acccgcatta gcaggtttga 9241 tctggagaat gaagctctaa tcaccaacca aatggagaaa gggcacaggg ccttggcatt 9301 ggccataatc aagtacacat accaaaacaa agtggtaaag gtccttagac cagctgaaaa 9361 agggaaaaca gttatggaca ttatttcgag acaagaccaa agggggagcg gacaagttgt 9421 cacttacgct cttaacacat ttaccaacct agtggtgcaa ctcattcgga atatggaggc 9481 tgaggaagtt ctagagatgc aagacttgtg gctgctgcgg aggtcagaga aagtgactaa 9541 ctggttgcag agcaacggat gggataggct caaacgaatg gcagtcagtg gagatgattg 9601 cgttgtgaag ccaattgatg ataggtttgc acatgccctc aggttcttga atgatatggg 9661 aaaagttagg aaggacacac aagagtggaa accctcaact ggatgggaca actgggaaga 9721 agttccgttt tgctcccacc acttcaacaa gctccatctc aaggacggga ggtccattgt 9781 ggttccctgc cgccaccaag atgaactgat tggccgggcc cgcgtctctc caggggcggg 9841 atggagcatc cgggagactg cttgcctagc aaaatcatat gcgcaaatgt ggcagctcct 9901 ttatttccac agaagggacc tccgactgat ggccaatgcc atttgttcat ctgtgccagt 9961 tgactgggtt ccaactggga gaactacctg gtcaatccat ggaaagggag aatggatgac 10021 cactgaagac atgcttgtgg tgtggaacag agtgtggatt gaggagaacg accacatgga 10081 agacaagacc ccagttacga aatggacaga cattccctat ttgggaaaaa gggaagactt 10141 gtggtgtgga tctctcatag ggcacagacc gcgcaccacc tgggctgaga acattaaaaa 10201 cacagtcaac atggtgcgca ggatcatagg tgatgaagaa aagtacatgg actacctatc 10261 cacccaagtt cgctacttgg gtgaagaagg gtctacacct ggagtgctgt aagcaccaat 10321 cttaatgttg tcaggcctgc tagtcagcca cagcttgggg aaagctgtgc agcc Link to comment Share on other sites More sharing options...
niman Posted January 15, 2016 Author Report Share Posted January 15, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds1856518565100%0.099%KJ776791.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome1855218552100%0.099%KU321639.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds177351773598%0.098%JN860885.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds176971769797%0.099%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds175891758999%0.098%EU545988.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds164151641598%0.095%HQ234499.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID1343413434100%0.089%LC002520.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds1342913429100%0.089%KF268949.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds1342013420100%0.089%KF268948.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds1341213412100%0.089%KF268950.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome1337613376100%0.089%AY632535.2Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds132931329398%0.089%HQ234498.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds132881328899%0.089%KF383115.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds132721327299%0.089%KF383119.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds132481324899%0.089%DQ859059.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds132301323099%0.089%KF383116.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds132141321498%0.089%HQ234501.1Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds131691316999%0.088%KF383117.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds131471314798%0.088%HQ234500.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds129541302299%0.088%KF383118.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds128701287096%0.089%KF383121.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence108811088196%0.084%KF383120.1Select seq gb|DQ859064.1|Spondweni virus strain SM-6 V-1 polyprotein gene, complete cds2852418894%0.071%DQ859064.1 Link to comment Share on other sites More sharing options...
Recommended Posts
Please sign in to comment
You will be able to leave a comment after signing in
Sign In Now