Full Local Florida Human Zika Sequences - Broad Institute

[niman]

Full Florida Zika sequences have been released by The Broad Institute.

Edited October 22, 2016 by niman

[niman]

Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-010-URI polyprotein gene, complete cds

10,619 bp linear RNA

Accession:

 

KY014295.1

 

GI:

 

1087986118

GenBankFASTAGraphics

Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-032-URI polyprotein gene, complete cds

10,364 bp linear RNA

Accession:

 

KY014298.1

 

GI:

 

1087986126

GenBankFASTAGraphics

Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-039-URI polyprotein gene, complete cds

10,600 bp linear RNA

Accession:

 

KY014316.1

 

GI:

 

1087986181

GenBankFASTAGraphics

Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-030-URI polyprotein gene, complete cds

10,598 bp linear RNA

Accession:

 

KY014325.1

 

GI:

 

1087986202

GenBankFASTAGraphics

Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-038-URI polyprotein gene, complete cds

10,365 bp linear RNA

Accession:

 

KY014326.1

 

GI:

 

1087986204

GenBankFASTAGraphics

[niman]

Pinellas

LOCUS       KY014316               10600 bp    RNA     linear   VRL 21-OCT-2016
DEFINITION  Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-039-URI
            polyprotein gene, complete cds.
ACCESSION   KY014316
VERSION     KY014316.1
DBLINK      BioProject: PRJNA344504
            BioSample: SAMN05844994
KEYWORDS    .
SOURCE      Zika virus
  ORGANISM  Zika virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Flaviviridae; Flavivirus.
REFERENCE   1  (bases 1 to 10600)
  AUTHORS   Baniecki,M.L., Barnes,K.G., Bosch,I., Cannons,A., Cone,M.,
            Freije,C.A., Gehrke,L., Gladden-Young,A.D., Gnirke,A., Hogan,K.,
            Isern,S., Kopp,E., Luo,C.Y., MacInnis,B., Matranga,C.B.,
            Metsky,H.C., Michael,S., Park,D.J., Qu,J., Sabeti,P.C., Tan,A.,
            Tomkins-Tinch,C.H., West,K.L., Winnicki,S., Wohl,S. and
            Yozwiak,N.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-OCT-2016) Viral Genomics, Infectious Disease Program
            (Infectious Disease Initiative), Broad Institute, 75 Ames St,
            Cambridge, MA 02142, USA
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: github.com/broadinstitute/viral-ngs v.
                                     v1.11.0-119-g0edb62f-dirty
            Assembly Name         :: USA_2016_FL-039_URI-1
            Sequencing Technology :: Illumina; Swift LC
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..10600
                     /organism="Zika virus"
                     /mol_type="genomic RNA"
                     /isolate="Zika virus/H.sapiens-wt/USA/2016/FL-039-URI"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:64320"
                     /country="USA: Florida"
                     /collection_date="17-Aug-2016"
                     /collected_by="Florida Department of Health, Florida, USA"
     5'UTR           <1..68
     CDS             69..10340
                     /note="contains structural and nonstructural proteins"
                     /codon_start=1
                     /product="polyprotein"
                     /protein_id="AOY08537.1"
                     /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI
                     RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK
                     RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI
                     MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT
                     LPSHSTRKLQTRSQTWLESREXTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV
                     IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE
                     LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG
                     NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET
                     DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF
                     HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE
                     MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG
                     TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG
                     EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG
                     AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC
                     SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR
                     MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK
                     SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE
                     CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI
                     EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR
                     GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSVVTA
                     GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA
                     ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT
                     AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL
                     ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE
                     VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD
                     AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY
                     VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW
                     HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN
                     IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT
                     QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP
                     TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY
                     IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV
                     PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT
                     KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR
                     RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK
                     VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM
                     EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL
                     PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV
                     LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP
                     QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA
                     SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL
                     LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV
                     VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP
                     NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ
                     MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK
                     VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH
                     MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM
                     ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP
                     VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG
                     SYEAPTQGSASSLVNGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD
                     PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV
                     EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA
                     RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD
                     TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ
                     DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR
                     LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH
                     FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR
                     DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT
                     PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGEEEKYMDYLST
                     QVRYLGEEGSTPGVL"
     3'UTR           10341..>10600
ORIGIN      
        1 tttgaagcga aagctagcaa cagtatcaac aggttttatt ttggatttgg aaacgagagt
       61 ttctggtcat gaaaaaccca aaaaagaaat ccggaggatt ccggattgtc aatatgctaa
      121 aacgcggagt agcccgtgtg agcccctttg ggggcttgaa gaggctgcca gccggacttc
      181 tgctgggtca tgggcccatc aggatggtct tggcgattct agcctttttg agattcacgg
      241 caatcaagcc atcactgggt ctcatcaata gatggggttc agtggggaaa aaagaggcta
      301 tggaaataat aaagaagttc aagaaagatc tggctgccat gctgagaata atcaatgcta
      361 ggaaggagaa gaagagacga ggcgcagata ctagtgtcgg aattgttggc ctcctgctga
      421 ccacagctat ggcagcggag gtcactagac gtgggagtgc atactacatg tacttggaca
      481 gaaacgatgc tggggaggcc atatcttttc caaccacatt ggggatgaat aagtgttata
      541 tacagatcat ggatcttgga cacatgtgtg atgccaccat gagctatgaa tgccctatgc
      601 tggatgaggg ggtggaacca gatgacgtcg attgttggtg caacacgacg tcaacttggg
      661 ttgtgtacgg aacctgccat cacaaaaaag gtgaagcacg gagatctaga agagctgtga
      721 cgctcccctc ccattccact aggaagctgc aaacgcggtc gcaaacctgg ttggaatcaa
      781 gagaayacac aaagcacttg attagagtcg aaaattggat attcaggaac cctggcttcg
      841 cgttagcagc agctgccatc gcttggcttt tgggaagctc aacgagccaa aaagtcatat
      901 acttggtcat gatactgctg attgccccgg catacagcat caggtgcata ggagtcagca
      961 atagggactt tgtggaaggt atgtcaggtg ggacttgggt tgatgttgtc ttggaacatg
     1021 gaggttgtgt caccgtaatg gcacaggaca aaccgactgt cgacatagag ctggttacaa
     1081 caacagtcag caacatggcg gaggtaagat cctactgcta tgaggcatca atatcagaca
     1141 tggcttcgga cagccgctgc ccaacacaag gtgaagccta ccttgacaag caatcagaca
     1201 ctcaatatgt ctgyaaaaga acgttagtgg acagaggctg gggaaatgga tgtggacttt
     1261 ttggcaaagg gagcctggtg acatgcgcta agtttgcatg ctccaagaaa atgaccggga
     1321 agagcatcca gccagagaat ctggagtacc ggataatgct gtcagttcat ggctcccagc
     1381 acagtgggat gatcgttaat gacacaggac atgaaactga tgagaataga gcgaaggttg
     1441 agataacgcc caattcacca agagccgaag ccaccctggg gggttttgga agcctaggac
     1501 ttgattgtga accgaggaca ggccttgact tttcagattt gtattacttg actatgaata
     1561 acaagcactg gttggttcac aaggagtggt tccacgacat tccattacct tggcacgctg
     1621 gggcagacac cggaactcca cactggaaca acaaagaagc actggtagag ttcaaggacg
     1681 cacatgccaa aaggcaaact gtcgtggttc tagggagtca agaaggagca gttcacacgg
     1741 cccttgctgg agctctggag gctgagatgg atggtgcaaa gggaaggctg tcctctggcc
     1801 acttgaaatg tcgcctgaaa atggataaac ttagattgaa gggcgtgtca tactccttgt
     1861 gtaccgcagc gttcacattc accaagatcc cggctgaaac actgcacggg acagtcacag
     1921 tggaggtaca gtacgcaggg acagatggac cttgcaaggt tccagctcag atggcggtgg
     1981 acatgcaaac tctgacccca gttgggaggt tgataaccgc caaccccgta atcactgaaa
     2041 gcactgagaa ctctaagatg atgctggaac ttgatccacc atttggggac tcttacattg
     2101 tcataggagt cggggagaag aagatcaccc accactggca caggagtggc agcaccattg
     2161 gaaaagcatt tgaagccact gtgagaggtg ccaagagaat ggcagtcttg ggagacacag
     2221 cctgggactt tggatcagtt ggaggcgctc tcaactcatt gggcaagggc atccatcaaa
     2281 tttttggagc agctttcaaa tcattgtttg gaggaatgtc ctggttctca caaatcctca
     2341 ttggaacgtt gctgatgtgg ttgggtctga acacaaagaa tggatctatt tccctcatgt
     2401 gcttggcctt agggggagtg ttgatcttct tatccacagc cgtctctgct gatgtggggt
     2461 gctcggtgga cttctcaaag aaggagacga gatgcggtac aggggtgttc gtctataacg
     2521 acgttgaagc ctggagggac aggtacaagt accatcctga ctccccccgt agattggcag
     2581 cagcagtcaa gcaagcctgg gaagatggta tctgcgggat ctcctctgtt tcaagaatgg
     2641 aaaacatcat gtggagatca gtagaagggg agctcaatgc aatcctggaa gagaatggag
     2701 ttcaactgac ggtcgttgtg ggatctgtaa aaaaccccat gtggagaggt ccacagagat
     2761 tgcccgtgcc tgtgaacgag ctgccccacg gctggaaggc ttgggggaaa tcgtacttcg
     2821 ttagagcagc aaagacaaat aacagctttg tcgtggatgg tgacacactg aaggaatgcc
     2881 cactcaaaca tagagcatgg aacagctttc ttgtggagga tcatgggttc ggggtatttc
     2941 acactagtgt ctggctcaag gttagagaag attattcatt agagtgtgat ccagccgtta
     3001 ttggaacagc tgttaaggga aaggaggctg tacacagtga tctaggctac tggattgaga
     3061 gtgagaagaa tgacacatgg aggctgaaga gggcccatct gatcgagatg aaaacatgtg
     3121 aatggccaaa gtcccacaca ttgtggacag atggaataga agagagtgat ctgatcatac
     3181 ccaagtcttt agctgggcca ctcagccacc acaataccag agagggctat aggacccaaa
     3241 tgaaagggcc atggcacagt gaagagcttg aaattcggtt tgaggaatgc ccaggcacta
     3301 aggtccacgt ggaggaaaca tgtggaacaa gaggaccatc tctgagatca accactgcaa
     3361 gcggaagggt gatcgaggaa tggtgctgca gggagtgcac aatgccccca ctgtcgttcc
     3421 gggctaaaga tggctgttgg tatggaatgg agataaggcc caggaaagaa ccagaaagca
     3481 acttagtaag gtcagtggtg actgcaggat caactgatca catggatcac ttctcccttg
     3541 gagtgcttgt gattctgctc atggtgcagg aagggctgaa gaagagaatg accacaaaga
     3601 tcatcataag cacatcaatg gcagtgctgg tagctatgat cctgggagga ttttcaatga
     3661 gtgacctggc taagcttgca attttgatgg gtgccacctt cgcggaaatg aacactggag
     3721 gagatgtagc tcatctggcg ctgatagcgg cattcaaagt cagaccagcg ttgctggtat
     3781 ctttcatctt cagagctaat tggacacccc gtgaaagcat gctgctggcc ttggcctcgt
     3841 gtcttttgca aactgcgatc tccgccttgg aaggcgacct gatggttctc atcaatggtt
     3901 ttgctttggc ctggttggca atacgagcga tggttgttcc acgcactgat aacatcacct
     3961 tggcaatcct ggctgctctg acaccactgg cccggggcac actgcttgtg gcgtggagag
     4021 caggccttgc tacttgcggg gggtttatgc tcctctctct gaagggaaaa ggcagtgtga
     4081 agaagaactt accatttgtc atggccctgg gactaaccgc tgtgaggctg gtcgacccca
     4141 tcaacgtggt gggactgctg ttgctcacaa ggagtgggaa gcggagctgg ccccctagcg
     4201 aagtactcac agctgttggc ctgatatgcg cattggctgg agggttcgcc aaggcagata
     4261 tagagatggc tgggcccatg gccgcagtcg gtctgctaat tgtcagttac gtggtctcag
     4321 gaaagagtgt ggacatgtac attgaaagag caggtgacat cacatgggaa aaagatgcgg
     4381 aagtcactgg aaacagtccc cggctcgatg tggcgctaga tgagagtggt gatttctccc
     4441 tggtagagga tgacggtccc cccatgagag agatcatact caaggtggtc ctgatgacca
     4501 tctgtggcat gaacccaata gccataccct ttgcagctgg agcgtggtac gtatacgtga
     4561 agactggaaa aaggagtggt gctctatggg atgtgcctgc tcccaaggaa gtaaaaaagg
     4621 gggagaccac agatggagtg tacagagtaa tgactcgtag actgctaggt tcaacacaag
     4681 ttggagtggg agttatgcaa gagggggtct ttcacactat gtggcacgtc acaaaaggat
     4741 ccgcgctgag aagcggtgaa gggagacttg atccatactg gggagatgtc aagcaggatc
     4801 tggtgtcata ctgtggtcca tggaagctag atgccgcctg ggacgggcac agcgaggtgc
     4861 agctcttggc cgtgcccccc ggagagagag cgaggaacat ccagactctg cccggaatat
     4921 ttaagacaaa ggatggggac attggagcgg ttgcgctgga ttacccagca ggaacttcag
     4981 gatctccaat cctagacaag tgtgggagag tgataggact ttatggcaat ggggtcgtga
     5041 tcaaaaatgg gagttatgtt agtgccatca cccaagggag gagggaggaa gagactcctg
     5101 ttgagtgctt cgagccttcg atgctgaaga agaagcagct aactgtctta gacttgcatc
     5161 ctggagctgg gaaaaccagg agagttcttc ctgaaatagt ccgtgaagct ataaaaacaa
     5221 gactccgtac tgtgatctta gctccaacca gggttgtcgc tgctgaaatg gaggaagccc
     5281 ttagagggct tccagtgcgt tatatgacaa cagcagtcaa tgtcacccat tctggaacag
     5341 aaatcgtcga cttaatgtgc catgccacct tcacttcacg tctactacag ccaatcagag
     5401 tccccaacta taatctgtat attatggatg aggcccactt cacagatccc tcaagtatag
     5461 cagcaagagg atacatttca acaagggttg agatgggcga ggcggctgcc atcttcatga
     5521 ccgccacgcc accaggaacc cgtgacgcat ttccggactc caactcacca attatggaca
     5581 ccgaagtgga agtcccagag agagcctgga gctcaggctt tgattgggtg acggatcact
     5641 ctggaaaaac agtttggttt gttccaagcg tgaggaacgg caatgagatc gcagcttgtc
     5701 tgacaaaggc tggaaaacgg gtcatacagc tcagcagaaa gacttttgag acagagttcc
     5761 agaaaacaaa acatcaagag tgggactttg tcgtgacaac cgacatttca gagatgggcg
     5821 ccaactttaa agctgaccgt gtcatagatt ccaggagatg cctaaagccg gtcatacttg
     5881 atggcgagag agtcattctg gctggaccca tgcctgtcac acatgccagc gctgcccaga
     5941 ggagggggcg cataggcagg aatcccaaca aacctggaga tgagtatctg tatggaggtg
     6001 ggtgcgcaga gactgacgaa gaccatgcac actggcttga agcaagaatg ctccttgaca
     6061 atatttacct ccaagatggc ctcatagcct cgctctatcg acctgaggcc gacaaagtag
     6121 cagccattga gggagagttc aagcttagga cggagcaaag gaagaccttt gtggaactca
     6181 tgaaaagagg agatcttcct gtttggctgg cctatcaggt tgcatctgcc ggaataactt
     6241 acacagatag aagatggtgc tttgatggca cgaccaacaa caccataatg gaagacagtg
     6301 tgccggcaga ggtgtggacc agacacggag agaaaagagt gctcaaaccg aggtggatgg
     6361 acgccagagt ttgttcagat catgcggccc tgaagtcatt caaggagttt gccgctggga
     6421 aaagaggagc ggcttttgga gtgatggaag ccctgggaac actgccagga cacatgacag
     6481 agagattcca ggaagccatt gacaacctcg ctgtgctcat gcgggcagag actggaagca
     6541 ggccttacaa agccgcggcg gcccaattgc cggagaccct agagaccatt atgcttttgg
     6601 ggttgctggg aacagtctcg ctgggaatct ttttcgtctt gatgaggaac aagggcatag
     6661 ggaagatggg ctttggaatg gtgactcttg gggccagcgc atggctcatg tggctctcgg
     6721 aaattgagcc agccagaatt gcatgtgtcc tcattgttgt gttcctactg ctggtggtgc
     6781 tcatacctga gccagaaaag caaagatctc cccaggacaa ccaaatggca atcatcatca
     6841 tggtagcagt aggtcttctg ggcttgatca ccgccaatga actcggatgg ttggagagaa
     6901 caaagagtga cctaagccat ctaatgggaa ggagagagga gggagcaacc ataggattct
     6961 caatggacat tgacctgcgg ccagcctcag cttgggccat ctatgctgcc ttgacaactt
     7021 tcatcacccc agccgtccaa catgcagtga ccacttcata caacaactac tccttaatgg
     7081 cgatggccac gcaagctgga gtgttgtttg gtatgggcaa agggatgcca ttctacgcat
     7141 gggactttgg agtcccgctg ctaatgatag gttgctactc acaattaaca cccctgaccc
     7201 taatagtggc catcattttg ctcgtggcgc actacatgta cttgatccca gggctgcagg
     7261 cagcagctgc gcgtgctgcc cagaagagaa cggcagctgg catcatgaag aaccctgttg
     7321 tggatggaat agtggtgact gacattgaca caatgacaat tgacccccaa gtggagaaaa
     7381 agatgggaca ggtgctactc atagcagtag ccgtctccag cgccatactg tcgcggaccg
     7441 cctgggggtg gggggaggct ggggccctga tcacagccgc aacttccact ttgtgggaag
     7501 gctctccgaa caagtactgg aactcctcta cagccacttc actgtgtaac atttttaggg
     7561 gaagttactt ggctggagct tctctaatct acacagtaac aagaaacgct ggcttggtca
     7621 agagacgtgg gggtggaaca ggagagaccc tgggagagaa atggaaggcc cgcttgaacc
     7681 agatgtcggc cctggagttc tactcctaca aaaagtcagg catcaccgag gtgtgcagag
     7741 aagaggcccg ccgcgccctc aaggacggtg tggcaacggg aggccatgct gtgtcccgag
     7801 gaagtgcaaa gctgagatgg ttggtggagc ggggatacct gcagccctat ggaaaggtca
     7861 ttgatcttgg atgtggcaga gggggctgga gttactacgc cgccaccatc cgcaaagttc
     7921 aagaagtgaa aggatacaca aaaggaggcc ctggtcatga agaacccgtg ttggtgcaaa
     7981 gctatgggtg gaacatagtc cgtctcaaga gtggggtgga cgtctttcat atggcggctg
     8041 agccgtgtga cacgttgctg tgtgacatag gcgagtcatc atctagtcct gaagtcgaag
     8101 aagcacggac gctcagagtc ctctccatgg tgggggattg gcttgaaaaa agaccaggag
     8161 ccttytgtat aaaagtgttg tgcccataca ccagcactat gatggaaacc ctggagcgac
     8221 tgcagcgtag gtatggggga ggactggtca gagtgccact ctcccgcaac tctacacatg
     8281 agatgtactg ggtttctgga gcgaaaagca acaccataaa aagtgtgtcc accacgagcc
     8341 agctcctctt ggggcgcatg gacgggccta ggaggccagt gaaatatgag gaggatgtga
     8401 atctcggctc tggcacgcgg gctgtggtaa gctgcgctga agctcccaac atgaagatca
     8461 ttggtaaccg cattgaaagg atccgcagtg agcacgcgga aacgtggttc tttgacgaga
     8521 accacccata taggacatgg gcttaccatg gaagctatga ggcccccaca caagggtcag
     8581 catcctctct agtaaacggg gttgtcaggc tcctgtcaaa accctgggat gtggtgactg
     8641 gagtcacagg aatagccatg accgacacca caccgtatgg tcagcaaaga gttttcaagg
     8701 aaaaagtgga cactagggtg ccagaccccc aagaaggcac tcgtcaggtt atgagcatgg
     8761 tctcttcctg gttgtggaaa gagctaggca aacacaaacg gccacgagtc tgtaccaaag
     8821 aagagttcat caacaaggtt cgtagcaatg cagcattagg ggcaatattt gaagaggaaa
     8881 aagagtggaa gactgcagtg gaagctgtga acgatccaag gttctgggct ctagtggaca
     8941 aggaaagaga gcaccacctg agaggagagt gccagagttg tgtgtacaac atgatgggaa
     9001 aaagagaaaa gaaacaaggg gaatttggaa aggccaaggg cagccgcgcc atctggtata
     9061 tgtggctagg ggctagattt ctagagttcg aagcccttgg attcttgaac gaggatcact
     9121 ggatggggag agagaactca ggaggtggtg ttgaagggct gggattacaa agactcggat
     9181 atgtcctaga agagatgagt cgcataccag gaggaaggat gtatgcagat gacactgctg
     9241 gctgggatac ccgcatcagc aggtttgatc tagagaatga agctctaatc accaaccaaa
     9301 tggagaaagg gcacagggcc ttggcattgg ccataatcaa gtacacatac caaaacaaag
     9361 tggtaaaggt ccttagacca gctgaaaaag ggaaaacagt tatggacatt atttcgagac
     9421 aagaccaaag ggggagcgga caagtcgtca cttacgctct taacacattt accaacctag
     9481 tggtgcaact cattcggaat atggaggctg aggaagttct agagatgcaa gacttgtggc
     9541 tgctgcggag gtcagagaaa gtgaccaact ggttgcagag caacggatgg gataggctca
     9601 aacgaatggc agtcagtgga gatgattgcg ttgtgaagcc aattgatgat aggtttgcac
     9661 atgccctcag gttcttgaat gatatgggaa aagttaggaa ggacacacaa gagtggaaac
     9721 cctcaactgg atgggacaac tgggaagaag ttccgttttg ctcccaccac ttcaacaagc
     9781 tccatctcaa ggacgggagg tccattgtgg ttccctgccg ccaccaagat gaactgattg
     9841 gccgggcccg cgtctctcca ggggcgggat ggagcatccg ggagactgct tgcctagcaa
     9901 aatcatatgc gcaaatgtgg cagctccttt atttccacag aagggacctc cgactgatgg
     9961 ccaatgccat ttgttcatct gtgccagttg actgggttcc aactgggaga actacctggt
    10021 caatccatgg aaagggagaa tggatgacca ctgaagacat gcttgtggtg tggaacagag
    10081 tgtggattga ggagaacgac cacatggaag acaagacccc agttacgaaa tggacagaca
    10141 ttccctattt gggaaaaagg gaagacttgt ggtgtggatc tctcataggg cacagaccgc
    10201 gcaccacctg ggctgagaac attaaaaaca cagtcaacat ggtgcgcagg atcataggtg
    10261 aggaagaaaa gtacatggac tacctatcca cccaagttcg ctacttgggt gaagaagggt
    10321 ctacacctgg agtgctgtaa gcaccaatct taatgttgtc aggcctgcta gtcagccaca
    10381 gcttggggaa agctgtgcag cctgtgaccc ccccaggaga agctgggaaa ccaagcctat
    10441 agtcaggccg agaacgccat ggcacggaag aagccatgct gcctgtgagc ccctcagagg
    10501 acactgagtc aaaaaacccc acgcgcttgg aggcgcagga tgggaaaaga aggtggcgac
    10561 cttccccacc cttcaatctg gggcctgaac tggagatcag

[niman]

Pinellas update

Sequences producing significant alignments:

Select:AllNone Selected:0

AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments

Sequences producing significant alignments:

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
Select seq gb|KY014316.1|	Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-039-URI polyprotein gene, complete cds	18516	18516	100%	0.0	100%	KY014316.1
Select seq gb|KX922707.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds	18516	18516	100%	0.0	99%	KX922707.1
Select seq gb|KU853013.1|	Zika virus isolate Dominican Republic/2016/PD2, complete genome	18458	18458	100%	0.0	99%	KU853013.1
Select seq gb|KU853012.1|	Zika virus isolate Dominican Republic/2016/PD1, complete genome	18456	18456	100%	0.0	99%	KU853012.1
Select seq gb|KY014304.1|	Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0180-SER polyprotein gene, complete cds	18444	18444	100%	0.0	99%	KY014304.1
Select seq gb|KY014300.1|	Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0208-SER polyprotein gene, complete cds	18435	18435	100%	0.0	99%	KY014300.1
Select seq dbj|LC190723.1|	Zika virus genomic RNA, complete genome, strain: ZIKV/Hu/Yokohama/1/2016	18435	18435	100%	0.0	99%	LC190723.1
Select seq gb|KY014321.1|	Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0115-SER polyprotein gene, complete cds	18431	18431	100%	0.0	99%	KY014321.1
Select seq gb|KY014295.1|	Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-010-URI polyprotein gene, complete cds	18426	18426	100%	0.0	99%	KY014295.1
Select seq gb|KX842449.2|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds	18426	18426	100%	0.0	99%	KX842449.2
Select seq gb|KY014323.1|	Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-02-MOS polyprotein gene, complete cds	18413	18413	100%	0.0	99%	KY014323.1
Select seq gb|KY014314.1|	Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0436-SER polyprotein gene, complete cds	18413	18413	100%	0.0	99%	KY014314.1
Select seq gb|KX922703.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds	18413	18413	100%	0.0	99%	KX922703.1
Select seq gb|KX838905.2|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds	18413	18413	100%	0.0	99%	KX838905.2
Select seq gb|KX832731.1|	Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds	18413	18413	100%	0.0	99%	KX832731.1
Select seq gb|KX922706.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds	18410	18410	100%	0.0	99%	KX922706.1
Select seq gb|KX922704.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds	18408	18408	100%	0.0	99%	KX922704.1
Select seq gb|KX673530.1|	Zika virus isolate PHE_semen_Guadeloupe, complete genome	18408	18408	100%	0.0	99%	KX673530.1
Select seq gb|KY014322.1|	Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-03-MOS polyprotein gene, complete cds	18404	18404	100%	0.0	99%	KY014322.1
Select seq gb|KX838906.2|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds	18404	18404	100%	0.0	99%	KX838906.2
Select seq gb|KX838904.2|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds	18402	18402	100%	0.0	99%	KX838904.2
Select seq gb|KY014324.1|	Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-01-MOS polyprotein gene, complete cds	18399	18399	100%	0.0	99%	KY014324.1
Select seq gb|KX922705.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds	18392	18392	100%	0.0	99%	KX922705.1
Select seq gb|KX922708.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds	18386	18386	100%	0.0	99%	KX922708.1
Select seq gb|KY014299.1|	Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-04-MOS polyprotein gene, complete cds	18381	18381	100%	0.0	99%	KY014299.1
Select seq gb|KX447510.1|	Zika virus isolate 1_0049_PF polyprotein gene, complete cds	18350	18350	100%	0.0	99%	KX447510.1
Select seq gb|KX280026.1|	Zika virus isolate Paraiba_01, complete genome	18345	18345	100%	0.0	99%	KX280026.1
Select seq gb|KX447512.1|	Zika virus isolate 1_0181_PF polyprotein gene, complete cds	18341	18341	100%	0.0	99%	KX447512.1
Select seq gb|KX369547.1|	Zika virus strain PF13/251013-18, complete genome	18341	18341	100%	0.0	99%	KX369547.1
Select seq gb|KU509998.3|	Zika virus strain Haiti/1225/2014, complete genome	18341	18341	100%	0.0	99%	KU509998.3
Select seq gb|KJ776791.2|	Zika virus strain H/PF/2013, complete genome	18336	18336	100%	0.0	99%	KJ776791.2
Select seq gb|KX447509.1|	Zika virus isolate 1_0087_PF polyprotein gene, complete cds	18336	18336	100%	0.0	99%	KX447509.1
Select seq gb|KU991811.1|	Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds	18336	18336	100%	0.0	99%	KU991811.1
Select seq gb|KU729217.2|	Zika virus isolate BeH823339 polyprotein gene, complete cds	18336	18336	100%	0.0	99%	KU729217.2
Select seq gb|KX447513.1|	Zika virus isolate 1_0134_PF polyprotein gene, complete cds	18332	18332	100%	0.0	99%	KX447513.1
Select seq gb|KX811222.1|	Zika virus isolate Brazil_2015_MG, complete genome	18327	18327	100%	0.0	99%	KX811222.1
Select seq gb|KX197205.1|	Zika virus isolate 9, complete genome	18327	18327	100%	0.0	99%	KX197205.1
Select seq gb|KX447515.1|	Zika virus isolate 1_0030_PF polyprotein gene, complete cds	18327	18327	100%	0.0	99%	KX447515.1
Select seq gb|KX447511.1|	Zika virus isolate 1_0015_PF polyprotein gene, complete cds	18327	18327	100%	0.0	99%	KX447511.1
Select seq gb|KU321639.1|	Zika virus strain ZikaSPH2015, complete genome	18327	18327	100%	0.0	99%	KU321639.1
Select seq gb|KX879604.1|	Zika virus isolate SN089, complete genome	18323	18323	100%	0.0	99%	KX879604.1
Select seq gb|KX447514.1|	Zika virus isolate 1_0035_PF polyprotein gene, complete cds	18323	18323	100%	0.0	99%	KX447514.1
Select seq gb|KX051563.1|	Zika virus isolate Haiti/1/2016, complete genome	18323	18323	100%	0.0	99%	KX051563.1
Select seq gb|KX447516.1|	Zika virus isolate 1_0111_PF polyprotein gene, complete cds	18318	18318	100%	0.0	99%	KX447516.1
Select seq gb|KU729218.1|	Zika virus isolate BeH828305 polyprotein gene, complete cds	18318	18318	100%	0.0	99%	KU729218.1
Select seq gb|KU707826.1|	Zika virus isolate SSABR1, complete genome	18318	18318	100%	0.0	99%	KU707826.1
Select seq gb|KU527068.1|	Zika virus strain Natal RGN, complete genome	18318	18318	100%	0.0	99%	KU527068.1
Select seq gb|KU365779.1|	Zika virus strain BeH819966 polyprotein gene, complete cds	18318	18318	100%	0.0	99%	KU365779.1
Select seq gb|KX879603.1|	Zika virus isolate SN062, complete genome	18314	18314	100%	0.0	99%	KX879603.1
Select seq gb|KX262887.1|	Zika virus isolate 103451, complete genome	18314	18314	100%	0.0	99%	KX262887.1
Select seq gb|KX197192.1|	Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome	18314	18314	100%	0.0	99%	KX197192.1
Select seq gb|KU926310.1|	Zika virus isolate Rio-S1, complete genome	18314	18314	100%	0.0	99%	KU926310.1
Select seq gb|KU926309.1|	Zika virus isolate Rio-U1, complete genome	18314	18314	100%	0.0	99%	KU926309.1
Select seq gb|KU501217.1|	Zika virus strain 8375 polyprotein gene, complete cds	18314	18314	100%	0.0	99%	KU501217.1
Select seq gb|KU940228.1|	Zika virus isolate Bahia07, partial genome	18309	18309	100%	0.0	99%	KU940228.1
Select seq gb|KU501216.1|	Zika virus strain 103344 polyprotein gene, complete cds	18309	18309	100%	0.0	99%	KU501216.1
Select seq gb|KX694534.1|	Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome	18305	18305	100%	0.0	99%	KX694534.1
Select seq gb|KX198135.1|	Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome	18305	18305	100%	0.0	99%	KX198135.1
Select seq gb|KU365780.1|	Zika virus strain BeH815744 polyprotein gene, complete cds	18305	18305	100%	0.0	99%	KU365780.1
Select seq gb|KY014303.1|	Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0127-SER polyprotein gene, complete cds	18300	18300	100%	0.0	99%	KY014303.1
Select seq gb|KU647676.1|	Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds	18300	18300	100%	0.0	99%	KU647676.1
Select seq gb|KU365777.1|	Zika virus strain BeH818995 polyprotein gene, complete cds	18300	18300	100%	0.0	99%	KU365777.1
Select seq gb|KX447517.1|	Zika virus isolate 1_0038_PF polyprotein gene, complete cds	18296	18296	100%	0.0	99%	KX447517.1
Select seq gb|KU758877.1|	Zika virus isolate 17271 polyprotein gene, complete cds	18296	18296	100%	0.0	99%	KU758877.1
Select seq gb|KX247646.1|	Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome	18296	18296	100%	0.0	99%	KX247646.1
Select seq gb|KX156776.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome	18296	18296	100%	0.0	99%	KX156776.1
Select seq gb|KY014297.1|	Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-6864-URI polyprotein gene, complete cds	18294	18294	100%	0.0	99%	KY014297.1
Select seq gb|KU497555.1|	Zika virus isolate Brazil-ZKV2015, complete genome	18292	18292	99%	0.0	99%	KU497555.1
Select seq gb|KX520666.1|	Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds	18291	18291	100%	0.0	99%	KX520666.1
Select seq gb|KX156774.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome	18291	18291	100%	0.0	99%	KX156774.1
Select seq gb|KY014327.1|	Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME167-PLA polyprotein gene, complete cds	18289	18289	100%	0.0	99%	KY014327.1
Select seq gb|KU820897.5|	Zika virus isolate FLR polyprotein gene, complete cds	18287	18287	100%	0.0	99%	KU820897.5
Select seq gb|KX247632.1|	Zika virus isolate MEX_I_7 polyprotein gene, complete cds	18287	18287	100%	0.0	99%	KX247632.1
Select seq gb|KX156775.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome	18287	18287	100%	0.0	99%	KX156775.1
Select seq gb|KX087102.1|	Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome	18287	18287	100%	0.0	99%	KX087102.1
Select seq gb|KU365778.1|	Zika virus strain BeH819015 polyprotein gene, complete cds	18287	18287	100%	0.0	99%	KU365778.1
Select seq gb|KU312312.1|	Zika virus isolate Z1106033 polyprotein gene, complete cds	18287	18287	100%	0.0	99%	KU312312.1
Select seq gb|KY014315.1|	Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME152-SER polyprotein gene, complete cds	18283	18283	100%	0.0	99%	KY014315.1
Select seq gb|KU922960.1|	Zika virus isolate MEX/InDRE/Sm/2016, complete genome	18282	18282	100%	0.0	99%	KU922960.1
Select seq gb|KY014296.1|	Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ131D1-URI polyprotein gene, complete cds	18278	18278	100%	0.0	99%	KY014296.1
Select seq gb|KX806557.2|	Zika virus isolate TS17-2016, complete genome	18278	18278	100%	0.0	99%	KX806557.2
Select seq gb|KX856011.1|	Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome	18278	18278	100%	0.0	99%	KX856011.1
Select seq gb|KX548902.1|	Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds	18278	18278	100%	0.0	99%	KX548902.1
Select seq gb|KX446951.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome	18278	18278	100%	0.0	99%	KX446951.1
Select seq gb|KU937936.1|	Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds	18278	18278	100%	0.0	99%	KU937936.1
Select seq gb|KU922923.1|	Zika virus isolate MEX/InDRE/Lm/2016, complete genome	18278	18278	100%	0.0	99%	KU922923.1
Select seq gb|KU501215.1|	Zika virus strain PRVABC59, complete genome	18278	18278	100%	0.0	99%	KU501215.1
Select seq gb|KX893855.1|	Zika virus strain Zika virus/Homo sapiens/VEN/UF-2/2016, complete genome	18273	18273	100%	0.0	99%	KX893855.1
Select seq gb|KX601168.1|	Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome	18273	18273	100%	0.0	99%	KX601168.1
Select seq gb|KX446950.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome	18273	18273	100%	0.0	99%	KX446950.1
Select seq gb|KX087101.2|	Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome	18273	18273	100%	0.0	99%	KX087101.2
Select seq gb|KU870645.1|	Zika virus isolate FB-GWUH-2016, complete genome	18273	18273	100%	0.0	99%	KU870645.1
Select seq gb|KX702400.1|	Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome	18269	18269	100%	0.0	99%	KX702400.1
Select seq gb|KX377337.1|	Zika virus strain PRVABC-59, complete genome	18269	18269	100%	0.0	99%	KX377337.1
Select seq gb|KX766029.1|	Zika virus isolate R116265, complete genome	18264	18264	100%	0.0	99%	KX766029.1
Select seq gb|KU820898.1|	Zika virus isolate GZ01 polyprotein gene, complete cds	18260	18260	100%	0.0	99%	KU820898.1
Select seq gb|KX056898.1|	Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds	18254	18254	100%	0.0	99%	KX056898.1
Select seq gb|KU955590.1|	Zika virus isolate Z16019 polyprotein gene, complete cds	18254	18254	100%	0.0	99%	KU955590.1
Select seq gb|KX766028.1|	Zika virus isolate R114916, complete genome	18253	18253	100%	0.0	99%	KX766028.1
Select seq gb|KU740184.2|	Zika virus isolate GD01 polyprotein gene, complete cds	18251	18251	100%	0.0	99%	KU740184.2

[niman]

LOCUS       KY014295               10619 bp    RNA     linear   VRL 21-OCT-2016
DEFINITION  Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-010-URI
            polyprotein gene, complete cds.
ACCESSION   KY014295
VERSION     KY014295.1
DBLINK      BioProject: PRJNA344504
            BioSample: SAMN05792872
KEYWORDS    .
SOURCE      Zika virus
  ORGANISM  Zika virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Flaviviridae; Flavivirus.
REFERENCE   1  (bases 1 to 10619)
  AUTHORS   Baniecki,M.L., Barnes,K.G., Bosch,I., Cannons,A., Cone,M.,
            Freije,C.A., Gehrke,L., Gladden-Young,A.D., Gnirke,A., Hogan,K.,
            Isern,S., Kopp,E., Luo,C.Y., MacInnis,B., Matranga,C.B.,
            Metsky,H.C., Michael,S., Park,D.J., Qu,J., Sabeti,P.C., Tan,A.,
            Tomkins-Tinch,C.H., West,K.L., Winnicki,S., Wohl,S. and
            Yozwiak,N.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-OCT-2016) Viral Genomics, Infectious Disease Program
            (Infectious Disease Initiative), Broad Institute, 75 Ames St,
            Cambridge, MA 02142, USA
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: github.com/broadinstitute/viral-ngs v.
                                     v1.11.0-119-g0edb62f-dirty
            Assembly Name         :: USA_2016_FL-010_URI-1
            Coverage              :: 40x
            Sequencing Technology :: Illumina; Swift LC
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..10619
                     /organism="Zika virus"
                     /mol_type="genomic RNA"
                     /isolate="Zika virus/H.sapiens-wt/USA/2016/FL-010-URI"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:64320"
                     /country="USA: Miami, FL"
                     /collection_date="22-Jun-2016"
                     /collected_by="Florida Department of Health, Florida, USA"
                     /note="patient traveled to Cuba and returned 21 days prior
                     to sample collection, but may have been infected in Miami,
                     FL"
     5'UTR           <1..87
     CDS             88..10359
                     /note="contains structural and nonstructural proteins"
                     /codon_start=1
                     /product="polyprotein"
                     /protein_id="AOY08516.1"
                     /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI
                     RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK
                     RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI
                     MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT
                     LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV
                     IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE
                     LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG
                     NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET
                     DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF
                     HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE
                     MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG
                     TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG
                     EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG
                     AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC
                     SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR
                     MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK
                     SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE
                     CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI
                     EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR
                     GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSVVTA
                     GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA
                     ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT
                     AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL
                     ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE
                     VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD
                     AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY
                     VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW
                     HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN
                     IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT
                     QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP
                     TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY
                     IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV
                     PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT
                     KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR
                     RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK
                     VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM
                     EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL
                     PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV
                     LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP
                     QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA
                     SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL
                     LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV
                     VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP
                     NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ
                     MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK
                     VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH
                     MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM
                     ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP
                     VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG
                     SYEAPTQGSASSLVNGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD
                     PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV
                     EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA
                     RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD
                     TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ
                     DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR
                     LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH
                     FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR
                     DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTIEDMLVVWNRVWIEENDHMEDKT
                     PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGEEEKYMDYLST
                     QVRYLGEEGSTPGVL"
     3'UTR           10360..>10619
ORIGIN      
        1 cagactgcga cagttcgagt ttgaagcgaa agctagcaac agtatcaaca ggttttattt
       61 tggatttgga aacgagagtt tctggtcatg aaaaacccaa aaaagaaatc cggaggattc
      121 cggattgtca atatgctaaa acgcggagta gcccgtgtga gcccctttgg gggcttgaag
      181 aggctgccag ccggacttct gctgggtcat gggcccatca ggatggtctt ggcgattcta
      241 gcctttttga gattcacggc aatcaagcca tcactgggtc tcatcaatag atggggttca
      301 gtggggaaaa aagaggctat ggaaataata aagaagttca agaaagatct ggctgccatg
      361 ctgagaataa tcaatgctag gaaggagaag aagagacgag gcgcagatac tagtgtcgga
      421 attgttggcc tcctgctgac cacagctatg gcagcggagg tcactagacg tgggagtgca
      481 tactacatgt acttggacag aaacgatgct ggggaggcca tatctttccc aaccacattg
      541 gggatgaata agtgttatat acagatcatg gatcttggac acatgtgtga tgccaccatg
      601 agctatgaat gccctatgct ggatgagggg gtggaaccag atgacgtcga ttgttggtgc
      661 aacacgacgt caacttgggt tgtgtacgga acctgccatc acaaaaaagg tgaagcacgg
      721 agatctagaa gagctgtgac gctcccctcc cattccacta ggaagctgca aacgcggtcg
      781 caaacctggt tggaatcaag agaatacaca aagcacttga ttagagtcga aaattggata
      841 ttcaggaacc ctggcttcgc gttagcagca gctgccatcg cttggctttt gggaagctca
      901 acgagccaaa aagttatata cttggtcatg atactgctga ttgccccggc atacagcatc
      961 aggtgcatag gagtcagcaa tagggacttt gtggaaggta tgtcaggtgg gacttgggtt
     1021 gatgttgtct tggaacatgg aggctgtgtc accgtaatgg cacaggacaa accgactgtc
     1081 gacatagagc tggttacaac aacagtcagc aacatggcgg aggtaagatc ctactgctat
     1141 gaggcatcaa tatcagacat ggcttcggac agccgctgcc caacacaagg tgaagcctac
     1201 cttgacaagc aatcagacac tcaatatgtc tgcaaaagaa cgttagtgga cagaggctgg
     1261 ggaaatggat gtggactttt tggcaaaggg agcctggtga catgcgctaa gtttgcatgc
     1321 tccaagaaaa tgaccgggaa gagcatccag ccagagaatc tggagtaccg gataatgctg
     1381 tcagttcatg gctcccagca cagtgggatg atcgttaatg acacaggaca tgaaactgat
     1441 gagaatagag cgaaggttga gataacgccc aattcaccaa gagccgaagc caccctgggg
     1501 ggttttggaa gcctaggact ggattgtgaa ccgaggacag gccttgactt ttcagatttg
     1561 tattacttga ctatgaataa caagcactgg ttggttcaca aggagtggtt ccacgacatt
     1621 ccattacctt ggcacgctgg ggcagacacc ggaactccac actggaacaa caaagaagca
     1681 ctggtagagt tcaaggacgc acatgccaaa aggcaaactg tcgtggttct agggagtcaa
     1741 gaaggagcag ttcacacggc ccttgctgga gctctggagg ctgagatgga tggtgcaaag
     1801 ggaaggctgt cctctggcca cttgaaatgt cgcctgaaaa tggataaact tagattgaag
     1861 ggcgtgtcat actccttgtg taccgcagcg ttcacattca ccaagatccc ggctgaaaca
     1921 ctgcacggga cagtcacagt ggaggtacag tacgcaggga cagatggacc ttgcaaggtt
     1981 ccagctcaga tggcggtgga catgcaaact ctgaccccag ttgggaggtt gataaccgcc
     2041 aaccccgtaa tcactgaaag cactgagaac tctaagatga tgctggaact tgatccacca
     2101 tttggggact cttacattgt cataggagtc ggggagaaga agatcaccca ccactggcac
     2161 aggagtggca gcaccattgg aaaagcattt gaagccactg tgagaggtgc caagagaatg
     2221 gcagtcttgg gagatacagc ctgggacttt ggatcagttg gaggcgctct caactcattg
     2281 ggcaagggca tccatcaaat ttttggagca gctttcaaat cattgtttgg aggaatgtcc
     2341 tggttctcac aaatcctcat tggaacgttg ctgatgtggt tgggtctgaa cacaaagaat
     2401 ggatctattt ccctcatgtg cttggcctta gggggagtgt tgatcttctt atccacagcc
     2461 gtctctgctg atgtggggtg ctcggtggac ttctcaaaga aggagacgag atgcggtaca
     2521 ggggtgttcg tctataacga cgttgaagcc tggagggaca ggtacaagta ccatcctgac
     2581 tccccccgta gattggcagc agcagtcaag caagcctggg aagatggtat ctgcgggatc
     2641 tcctctgttt caagaatgga aaacatcatg tggagatcag tagaagggga gctcaatgca
     2701 atcctggaag agaatggagt tcaactgacg gtcgttgtgg gatctgtaaa aaaccccatg
     2761 tggagaggtc cacagagatt gcccgtgcct gtgaacgagc tgccccacgg ctggaaggct
     2821 tgggggaaat cgtacttcgt tagagcagca aagacaaata acagctttgt cgtggatggt
     2881 gacacactga aggaatgccc actcaaacat agagcatgga acagctttct tgtggaggat
     2941 catgggttcg gggtatttca cactagtgtc tggctcaagg ttagagaaga ttattcatta
     3001 gagtgtgatc cagccgttat tggaacagct gttaagggaa aggaggctgt acacagtgat
     3061 ctaggctact ggattgagag tgagaagaat gacacatgga ggctgaagag ggcccatctg
     3121 atcgagatga aaacatgtga atggccaaag tcccacacat tgtggacaga tggaatagaa
     3181 gagagtgatc tgatcatacc caagtcttta gctgggccac tcagccatca caataccaga
     3241 gagggctaca ggacccaaat gaaagggcca tggcacagtg aagagcttga aattcggttt
     3301 gaggaatgcc caggcactaa ggtccacgtg gaggaaacat gtggaacaag aggaccatct
     3361 ctgagatcaa ccactgcaag cggaagggtg atcgaggaat ggtgctgcag ggagtgcaca
     3421 atgcccccac tgtcgttccg ggctaaagat ggctgttggt atggaatgga gataaggccc
     3481 aggaaagaac cagaaagcaa cttagtaagg tcagtggtga ctgcaggatc aactgatcac
     3541 atggatcact tctcccttgg agtgcttgtg attctgctca tggtgcagga agggctgaag
     3601 aagagaatga ccacaaagat catcataagc acatcaatgg cagtgctggt agctatgatc
     3661 ctgggaggat tttcaatgag tgacctggct aagcttgcaa ttttgatggg tgccaccttc
     3721 gcggaaatga acactggagg agatgtagct catctggcgc tgatagcggc attcaaagtc
     3781 agaccagcgt tgctggtatc tttcatcttc agagctaatt ggacaccccg tgaaagcatg
     3841 ctgctggcct tggcctcgtg tcttttgcaa actgcgatct ccgccttgga aggcgacctg
     3901 atggttctca tcaatggttt tgctttggcc tggttggcaa tacgagcgat ggttgttcca
     3961 cgcactgata acatcacctt ggcaatcctg gctgctctga caccactggc ccggggcaca
     4021 ctgcttgtgg cgtggagagc aggccttgct acttgcgggg ggtttatgct cctctctctg
     4081 aagggaaaag gcagtgtgaa gaagaactta ccatttgtca tggccctggg actaaccgct
     4141 gtgaggctgg tcgaccccat caacgtggtg ggactgctgt tgctcacaag gagtgggaag
     4201 cggagctggc cccctagcga agtactcaca gctgttggcc tgatatgcgc attggctgga
     4261 gggttcgcca aggcagatat agagatggct gggcccatgg ccgcggtcgg tctgctaatt
     4321 gtcagttacg tggtctcagg aaagagtgtg gacatgtaca ttgaaagagc aggtgacatc
     4381 acatgggaaa aagatgcgga agtcactgga aacagtcccc ggctcgatgt ggcgctagat
     4441 gagagtggtg atttctccct ggtggaggat gacggtcccc ccatgagaga gatcatactc
     4501 aaggtggtcc tgatgaccat ctgtggcatg aacccaatag ccataccctt tgcagctgga
     4561 gcgtggtacg tatacgtgaa gactggaaaa aggagtggtg ctctatggga tgtgcctgct
     4621 cccaaggaag taaaaaaggg ggagaccaca gatggagtgt acagagtaat gactcgtaga
     4681 ctgctaggtt caacacaagt tggagtggga gttatgcaag agggggtctt tcacactatg
     4741 tggcacgtca caaaaggatc cgcgctgaga agcggtgaag ggagacttga tccatactgg
     4801 ggagatgtca agcaggatct ggtgtcatac tgtggtccat ggaagctaga tgccgcctgg
     4861 gacgggcaca gcgaggtgca gctcttggcc gtgccccccg gagagagagc gaggaacatc
     4921 cagactctgc ccggaatatt taagacaaag gatggggaca ttggagcggt tgcgctggat
     4981 tacccagcag gaacttcagg atctccaatc ctagacaagt gtgggagagt gataggactt
     5041 tatggcaatg gggtcgtgat caaaaatggg agttatgtta gtgccatcac ccaagggagg
     5101 agggaggaag agactcctgt tgagtgcttc gagccttcga tgctgaagaa gaagcagcta
     5161 actgtcttag acttgcatcc tggagctggg aaaaccagga gagttcttcc tgaaatagtc
     5221 cgtgaagcta taaaaacaag actccgtact gtgatcttag ctccaaccag ggttgtcgct
     5281 gctgaaatgg aggaagccct tagagggctt ccagtgcgtt atatgacaac agcagtcaat
     5341 gtcacccatt ctggaacaga aatcgtcgac ttaatgtgcc atgccacctt cacttcacgt
     5401 ctactacagc caatcagagt ccccaactat aatctgtata ttatggatga ggcccacttc
     5461 acagatccct caagtatagc agcaagagga tacatttcaa caagggttga gatgggcgag
     5521 gcggctgcca tcttcatgac cgccacgcca ccaggaaccc gtgacgcatt tccggactcc
     5581 aactcaccaa ttatggacac cgaagtggaa gtcccagaga gagcctggag ctcaggcttt
     5641 gattgggtga cggatcattc tggaaaaaca gtttggtttg ttccaagcgt gaggaacggc
     5701 aatgagatcg cagcttgtct gacaaaggct ggaaaacggg tcatacagct cagcagaaag
     5761 acttttgaga cagagttcca gaaaacaaaa catcaagagt gggactttgt cgtgacaacc
     5821 gacatttcag agatgggcgc caactttaaa gctgaccgtg tcatagattc caggagatgc
     5881 ctaaagccgg tcatacttga tggcgagaga gtcattctgg ctggacccat gcctgtcaca
     5941 catgccagcg ctgcccagag gagggggcgc ataggcagga atcccaacaa acctggagat
     6001 gagtatctgt atggaggtgg gtgcgcagag actgacgaag accatgcaca ctggcttgaa
     6061 gcaagaatgc tccttgacaa tatttacctc caagatggcc tcatagcctc gctctatcga
     6121 cctgaggccg acaaagtagc agccattgag ggagagttca agcttaggac ggagcaaagg
     6181 aagacctttg tggaactcat gaaaagagga gatcttcctg tttggctggc ctatcaggtt
     6241 gcatctgccg gaataactta cacagataga agatggtgct ttgatggcac gaccaacaac
     6301 accataatgg aagacagtgt gccggcagag gtgtggacca gacacggaga gaaaagagtg
     6361 ctcaaaccga ggtggatgga cgccagagtt tgttcagatc atgcggccct gaagtcattc
     6421 aaggagtttg ccgctgggaa aagaggagcg gcttttggag tgatggaagc cctgggaaca
     6481 ctgccaggac acatgacaga gagattccag gaagccattg acaacctcgc tgtgctcatg
     6541 cgggcagaga ctggaagcag gccttacaaa gccgcggcgg cccaattgcc ggagacccta
     6601 gagaccatta tgcttttggg gttgctggga acagtctcgc tgggaatctt tttcgtcttg
     6661 atgaggaaca agggcatagg gaagatgggc tttggaatgg tgactcttgg ggccagcgca
     6721 tggctcatgt ggctctcgga aattgagcca gccagaattg catgtgtcct cattgttgtg
     6781 ttcctattgc tggtggtgct catacctgag ccagaaaagc aaagatctcc ccaggacaac
     6841 caaatggcaa tcatcatcat ggtagcagta ggtcttctag gcttgatcac cgccaatgaa
     6901 ctcggatggt tggagagaac aaagagtgac ctaagccatc taatgggaag gagagaggag
     6961 ggagcaacca taggattctc aatggacatt gacctgcggc cagcctcagc ttgggccatc
     7021 tatgctgcct tgacaacttt cattacccca gccgtccaac atgcagtgac cacttcatac
     7081 aacaactact ccttaatggc gatggccacg caagctggag tgttgtttgg tatgggcaaa
     7141 gggatgccat tctacgcatg ggactttgga gtcccgctgc taatgatagg ttgctactca
     7201 caattaacac ccctgaccct aatagtggcc atcattttgc tcgtggcgca ctacatgtac
     7261 ttgatcccag ggctgcaggc agcagctgcg cgtgctgccc agaagagaac ggcagctggc
     7321 atcatgaaga accctgttgt ggatggaata gtggtgactg acattgacac aatgacaatt
     7381 gacccccaag tggagaaaaa gatgggacag gtgctactca tagcagtagc cgtctccagc
     7441 gccatactgt cgcggaccgc ctgggggtgg ggggaggctg gggccctgat cacagccgca
     7501 acttccactt tgtgggaagg ctctccgaac aagtactgga actcctctac agccacttca
     7561 ctgtgtaaca tttttagggg aagttacttg gctggagctt ctctaatcta cacagtaaca
     7621 agaaacgctg gcttggtcaa gagacgtggg ggtggaacag gagagaccct gggagagaaa
     7681 tggaaggccc gcttgaacca gatgtcggcc ctggagttct actcctacaa aaagtcaggc
     7741 atcaccgagg tgtgcagaga agaggcccgc cgcgccctca aggacggtgt ggcaacggga
     7801 ggccatgctg tgtcccgagg aagtgcaaag ctgagatggt tggtggagcg gggatacctg
     7861 cagccctatg gaaaggtcat tgatcttgga tgtggcagag ggggctggag ttactacgcc
     7921 gccaccatcc gcaaagttca agaagtgaaa ggatacacaa aaggaggccc tggtcatgaa
     7981 gaacccgtgt tggtgcaaag ctatgggtgg aacatagtcc gtctcaagag tggggtggac
     8041 gtctttcata tggcggctga gccgtgtgac acgttgctat gtgacatagg tgagtcatca
     8101 tctagtcctg aagtggaaga agcacggacg ctcagagtcc tctccatggt gggggattgg
     8161 cttgaaaaaa gaccaggagc cttttgtata aaagtgttgt gcccatacac cagcactatg
     8221 atggaaaccc tggagcgact gcagcgtagg tatgggggag gactggtcag agtgccactc
     8281 tcccgcaact ctacacatga gatgtactgg gtctctggag cgaaaagcaa caccataaaa
     8341 agtgtgtcca ccacgagcca gctcctcttg gggcgcatgg acgggcctag gaggccagtg
     8401 aaatatgagg aggatgtgaa tctcggctct ggcacgcggg ctgtggtaag ctgcgctgaa
     8461 gctcccaaca tgaagatcat tggtaaccgc attgaaagga tccgcagtga gcacgcggaa
     8521 acgtggttct ttgacgagaa ccacccatat aggacatggg cttaccatgg aagctatgag
     8581 gcccccacac aagggtcagc atcctctcta gtaaacgggg ttgtcaggct cctgtcaaaa
     8641 ccctgggatg tggtgactgg agtcacagga atagccatga ccgacaccac accgtatggt
     8701 cagcaaagag ttttcaagga aaaagtggac actagggtgc cagaccccca agaaggcact
     8761 cgtcaggtta tgagcatggt ctcttcctgg ttgtggaaag agctaggcaa acacaaacgg
     8821 ccacgagtct gtaccaaaga agagttcatc aacaaggttc gtagcaatgc agcattaggg
     8881 gcaatatttg aagaggaaaa agagtggaag actgcagtgg aagctgtgaa cgatccaagg
     8941 ttctgggctc tagtggacaa ggaaagagag caccacctga gaggagagtg ccagagttgt
     9001 gtgtacaaca tgatgggaaa aagagaaaag aaacaagggg aatttggaaa ggccaagggc
     9061 agccgcgcca tctggtatat gtggctaggg gctagatttc tagagttcga agcccttgga
     9121 ttcttgaacg aggatcactg gatggggaga gagaactcag gaggtggtgt tgaagggctg
     9181 ggattacaaa gactcggata tgtcctagaa gagatgagtc gcataccagg aggaaggatg
     9241 tatgcagatg acactgctgg ctgggatacc cgcatcagca ggtttgatct agagaatgaa
     9301 gctctaatca ccaaccaaat ggagaaaggg cacagggcct tggcattggc cataatcaag
     9361 tacacatacc aaaacaaagt ggtaaaggtc cttagaccag ctgaaaaagg gaaaacagtt
     9421 atggacatta tttcgagaca agaccaaagg gggagcggac aagttgtcac ttacgctctt
     9481 aacacattta ccaacctagt ggtgcaactc attcggaata tggaggctga ggaagttcta
     9541 gagatgcaag acttgtggct gctgcggagg tcagagaaag tgaccaactg gttgcagagc
     9601 aacggatggg ataggctcaa acgaatggca gtcagtggag atgattgcgt tgtgaagcca
     9661 attgatgata ggtttgcaca tgccctcagg ttcttgaatg atatgggaaa agttaggaag
     9721 gacacacaag agtggaaacc ctcaactgga tgggacaact gggaagaagt tccgttttgc
     9781 tcccaccact tcaacaagct ccatctcaag gacgggaggt ccattgtggt tccctgccgc
     9841 caccaagatg aactgattgg ccgggcccgc gtctctccag gggcgggatg gagcatccgg
     9901 gagactgctt gcctagcaaa atcatatgcg caaatgtggc agctccttta tttccacaga
     9961 agggacctcc gactgatggc caatgccatt tgttcatctg tgccagttga ctgggttcca
    10021 actgggagaa ctacctggtc aatccatgga aagggagaat ggatgaccat tgaagacatg
    10081 cttgtggtgt ggaacagagt gtggattgag gagaacgacc acatggaaga caagacccca
    10141 gttacgaaat ggacagacat tccctatttg ggaaaaaggg aagacttgtg gtgtggatct
    10201 ctcatagggc acagaccgcg caccacctgg gctgagaaca ttaaaaacac agtcaacatg
    10261 gtgcgcagga tcataggtga ggaagaaaag tacatggact acctatccac ccaagtccgc
    10321 tacttgggtg aagaagggtc tacacctgga gtgctgtaag caccaatctt aatgttgtca
    10381 ggcctgctag tcagccacag cttggggaaa gctgtgcagc ctgtgacccc cccaggagaa
    10441 gctgggaaac caagcctata gtcaggccga gaacgccatg gcacggaaga agccatgctg
    10501 cctgtgagcc cctcagagga cactgagtca aaaaacccca cgcgcttgga ggcgcaggat
    10561 gggaaaagaa ggtggcgacc ttccccaccc ttcaatctgg ggcctgaact ggagatcag

[niman]

Sequences producing significant alignments:

Select:AllNone Selected:0

AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments

Sequences producing significant alignments:

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
Select seq gb|KY014295.1|	Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-010-URI polyprotein gene, complete cds	18525	18525	100%	0.0	100%	KY014295.1
Select seq gb|KX842449.2|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds	18525	18525	100%	0.0	100%	KX842449.2
Select seq gb|KY014323.1|	Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-02-MOS polyprotein gene, complete cds	18511	18511	100%	0.0	99%	KY014323.1
Select seq gb|KX922703.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds	18511	18511	100%	0.0	99%	KX922703.1
Select seq gb|KX838905.2|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds	18511	18511	100%	0.0	99%	KX838905.2
Select seq gb|KX832731.1|	Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds	18511	18511	100%	0.0	99%	KX832731.1
Select seq gb|KX922706.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds	18509	18509	100%	0.0	99%	KX922706.1
Select seq gb|KX922704.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds	18507	18507	100%	0.0	99%	KX922704.1
Select seq gb|KX838904.2|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds	18502	18502	100%	0.0	99%	KX838904.2
Select seq gb|KY014324.1|	Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-01-MOS polyprotein gene, complete cds	18498	18498	100%	0.0	99%	KY014324.1
Select seq gb|KY014304.1|	Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0180-SER polyprotein gene, complete cds	18462	18462	100%	0.0	99%	KY014304.1
Select seq gb|KY014300.1|	Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0208-SER polyprotein gene, complete cds	18462	18462	100%	0.0	99%	KY014300.1
Select seq gb|KU853013.1|	Zika virus isolate Dominican Republic/2016/PD2, complete genome	18456	18456	100%	0.0	99%	KU853013.1
Select seq gb|KU853012.1|	Zika virus isolate Dominican Republic/2016/PD1, complete genome	18456	18456	100%	0.0	99%	KU853012.1
Select seq dbj|LC190723.1|	Zika virus genomic RNA, complete genome, strain: ZIKV/Hu/Yokohama/1/2016	18453	18453	100%	0.0	99%	LC190723.1
Select seq gb|KY014321.1|	Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0115-SER polyprotein gene, complete cds	18447	18447	100%	0.0	99%	KY014321.1
Select seq gb|KX922707.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds	18435	18435	100%	0.0	99%	KX922707.1
Select seq gb|KX673530.1|	Zika virus isolate PHE_semen_Guadeloupe, complete genome	18435	18435	100%	0.0	99%	KX673530.1
Select seq gb|KY014322.1|	Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-03-MOS polyprotein gene, complete cds	18429	18429	100%	0.0	99%	KY014322.1
Select seq gb|KY014314.1|	Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0436-SER polyprotein gene, complete cds	18429	18429	100%	0.0	99%	KY014314.1
Select seq gb|KX838906.2|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds	18429	18429	100%	0.0	99%	KX838906.2
Select seq gb|KY014316.1|	Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-039-URI polyprotein gene, complete cds	18426	18426	100%	0.0	99%	KY014316.1
Select seq gb|KX922705.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds	18419	18419	100%	0.0	99%	KX922705.1
Select seq gb|KX922708.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds	18411	18411	100%	0.0	99%	KX922708.1
Select seq gb|KY014299.1|	Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-04-MOS polyprotein gene, complete cds	18408	18408	100%	0.0	99%	KY014299.1
Select seq gb|KX447510.1|	Zika virus isolate 1_0049_PF polyprotein gene, complete cds	18366	18366	100%	0.0	99%	KX447510.1
Select seq gb|KX280026.1|	Zika virus isolate Paraiba_01, complete genome	18363	18363	100%	0.0	99%	KX280026.1
Select seq gb|KX447512.1|	Zika virus isolate 1_0181_PF polyprotein gene, complete cds	18357	18357	100%	0.0	99%	KX447512.1
Select seq gb|KX369547.1|	Zika virus strain PF13/251013-18, complete genome	18357	18357	100%	0.0	99%	KX369547.1
Select seq gb|KU509998.3|	Zika virus strain Haiti/1225/2014, complete genome	18357	18357	100%	0.0	99%	KU509998.3
Select seq gb|KJ776791.2|	Zika virus strain H/PF/2013, complete genome	18354	18354	100%	0.0	99%	KJ776791.2
Select seq gb|KX447509.1|	Zika virus isolate 1_0087_PF polyprotein gene, complete cds	18354	18354	100%	0.0	99%	KX447509.1
Select seq gb|KU991811.1|	Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds	18354	18354	100%	0.0	99%	KU991811.1
Select seq gb|KU729217.2|	Zika virus isolate BeH823339 polyprotein gene, complete cds	18354	18354	100%	0.0	99%	KU729217.2
Select seq gb|KX447513.1|	Zika virus isolate 1_0134_PF polyprotein gene, complete cds	18348	18348	100%	0.0	99%	KX447513.1
Select seq gb|KX811222.1|	Zika virus isolate Brazil_2015_MG, complete genome	18345	18345	100%	0.0	99%	KX811222.1
Select seq gb|KX197205.1|	Zika virus isolate 9, complete genome	18345	18345	100%	0.0	99%	KX197205.1
Select seq gb|KX447515.1|	Zika virus isolate 1_0030_PF polyprotein gene, complete cds	18345	18345	100%	0.0	99%	KX447515.1
Select seq gb|KX447511.1|	Zika virus isolate 1_0015_PF polyprotein gene, complete cds	18345	18345	100%	0.0	99%	KX447511.1
Select seq gb|KU321639.1|	Zika virus strain ZikaSPH2015, complete genome	18345	18345	100%	0.0	99%	KU321639.1
Select seq gb|KX879604.1|	Zika virus isolate SN089, complete genome	18339	18339	100%	0.0	99%	KX879604.1
Select seq gb|KX447514.1|	Zika virus isolate 1_0035_PF polyprotein gene, complete cds	18339	18339	100%	0.0	99%	KX447514.1
Select seq gb|KX051563.1|	Zika virus isolate Haiti/1/2016, complete genome	18339	18339	100%	0.0	99%	KX051563.1
Select seq gb|KX447516.1|	Zika virus isolate 1_0111_PF polyprotein gene, complete cds	18336	18336	100%	0.0	99%	KX447516.1
Select seq gb|KU729218.1|	Zika virus isolate BeH828305 polyprotein gene, complete cds	18336	18336	100%	0.0	99%	KU729218.1
Select seq gb|KU707826.1|	Zika virus isolate SSABR1, complete genome	18336	18336	100%	0.0	99%	KU707826.1
Select seq gb|KU527068.1|	Zika virus strain Natal RGN, complete genome	18336	18336	100%	0.0	99%	KU527068.1
Select seq gb|KU365779.1|	Zika virus strain BeH819966 polyprotein gene, complete cds	18336	18336	100%	0.0	99%	KU365779.1
Select seq gb|KX879603.1|	Zika virus isolate SN062, complete genome	18330	18330	100%	0.0	99%	KX879603.1
Select seq gb|KX262887.1|	Zika virus isolate 103451, complete genome	18330	18330	100%	0.0	99%	KX262887.1
Select seq gb|KX197192.1|	Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome	18330	18330	100%	0.0	99%	KX197192.1
Select seq gb|KU926310.1|	Zika virus isolate Rio-S1, complete genome	18330	18330	100%	0.0	99%	KU926310.1
Select seq gb|KU926309.1|	Zika virus isolate Rio-U1, complete genome	18330	18330	100%	0.0	99%	KU926309.1
Select seq gb|KU940228.1|	Zika virus isolate Bahia07, partial genome	18327	18327	100%	0.0	99%	KU940228.1
Select seq gb|KX694534.1|	Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome	18321	18321	100%	0.0	99%	KX694534.1
Select seq gb|KX198135.1|	Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome	18321	18321	100%	0.0	99%	KX198135.1
Select seq gb|KU501217.1|	Zika virus strain 8375 polyprotein gene, complete cds	18321	18321	100%	0.0	99%	KU501217.1
Select seq gb|KU365780.1|	Zika virus strain BeH815744 polyprotein gene, complete cds	18321	18321	100%	0.0	99%	KU365780.1
Select seq gb|KY014303.1|	Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0127-SER polyprotein gene, complete cds	18318	18318	100%	0.0	99%	KY014303.1
Select seq gb|KU647676.1|	Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds	18318	18318	100%	0.0	99%	KU647676.1
Select seq gb|KU501216.1|	Zika virus strain 103344 polyprotein gene, complete cds	18318	18318	100%	0.0	99%	KU501216.1
Select seq gb|KU365777.1|	Zika virus strain BeH818995 polyprotein gene, complete cds	18318	18318	100%	0.0	99%	KU365777.1
Select seq gb|KY014297.1|	Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-6864-URI polyprotein gene, complete cds	18312	18312	100%	0.0	99%	KY014297.1
Select seq gb|KX447517.1|	Zika virus isolate 1_0038_PF polyprotein gene, complete cds	18312	18312	100%	0.0	99%	KX447517.1
Select seq gb|KU758877.1|	Zika virus isolate 17271 polyprotein gene, complete cds	18312	18312	100%	0.0	99%	KU758877.1
Select seq gb|KX247646.1|	Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome	18312	18312	100%	0.0	99%	KX247646.1
Select seq gb|KX156776.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome	18312	18312	100%	0.0	99%	KX156776.1
Select seq gb|KX520666.1|	Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds	18309	18309	100%	0.0	99%	KX520666.1
Select seq gb|KX156774.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome	18309	18309	100%	0.0	99%	KX156774.1
Select seq gb|KU497555.1|	Zika virus isolate Brazil-ZKV2015, complete genome	18309	18309	99%	0.0	99%	KU497555.1
Select seq gb|KY014327.1|	Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME167-PLA polyprotein gene, complete cds	18305	18305	100%	0.0	99%	KY014327.1
Select seq gb|KU820897.5|	Zika virus isolate FLR polyprotein gene, complete cds	18303	18303	100%	0.0	99%	KU820897.5
Select seq gb|KX247632.1|	Zika virus isolate MEX_I_7 polyprotein gene, complete cds	18303	18303	100%	0.0	99%	KX247632.1
Select seq gb|KX156775.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome	18303	18303	100%	0.0	99%	KX156775.1
Select seq gb|KX087102.1|	Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome	18303	18303	100%	0.0	99%	KX087102.1
Select seq gb|KU365778.1|	Zika virus strain BeH819015 polyprotein gene, complete cds	18303	18303	100%	0.0	99%	KU365778.1
Select seq gb|KU312312.1|	Zika virus isolate Z1106033 polyprotein gene, complete cds	18303	18303	100%	0.0	99%	KU312312.1
Select seq gb|KY014315.1|	Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME152-SER polyprotein gene, complete cds	18300	18300	100%	0.0	99%	KY014315.1
Select seq gb|KU922960.1|	Zika virus isolate MEX/InDRE/Sm/2016, complete genome	18300	18300	100%	0.0	99%	KU922960.1
Select seq gb|KY014296.1|	Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ131D1-URI polyprotein gene, complete cds	18294	18294	100%	0.0	99%	KY014296.1
Select seq gb|KX806557.2|	Zika virus isolate TS17-2016, complete genome	18294	18294	100%	0.0	99%	KX806557.2
Select seq gb|KX856011.1|	Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome	18294	18294	100%	0.0	99%	KX856011.1
Select seq gb|KX548902.1|	Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds	18294	18294	100%	0.0	99%	KX548902.1
Select seq gb|KX446951.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome	18294	18294	100%	0.0	99%	KX446951.1
Select seq gb|KU937936.1|	Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds	18294	18294	100%	0.0	99%	KU937936.1
Select seq gb|KU922923.1|	Zika virus isolate MEX/InDRE/Lm/2016, complete genome	18294	18294	100%	0.0	99%	KU922923.1
Select seq gb|KU501215.1|	Zika virus strain PRVABC59, complete genome	18294	18294	100%	0.0	99%	KU501215.1
Select seq gb|KX601168.1|	Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome	18291	18291	100%	0.0	99%	KX601168.1
Select seq gb|KX446950.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome	18291	18291	100%	0.0	99%	KX446950.1
Select seq gb|KX087101.2|	Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome	18291	18291	100%	0.0	99%	KX087101.2
Select seq gb|KU870645.1|	Zika virus isolate FB-GWUH-2016, complete genome	18291	18291	100%	0.0	99%	KU870645.1
Select seq gb|KX893855.1|	Zika virus strain Zika virus/Homo sapiens/VEN/UF-2/2016, complete genome	18289	18289	100%	0.0	99%	KX893855.1
Select seq gb|KX702400.1|	Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome	18285	18285	100%	0.0	99%	KX702400.1
Select seq gb|KX377337.1|	Zika virus strain PRVABC-59, complete genome	18285	18285	100%	0.0	99%	KX377337.1
Select seq gb|KX766029.1|	Zika virus isolate R116265, complete genome	18276	18276	100%	0.0	99%	KX766029.1
Select seq gb|KU820898.1|	Zika virus isolate GZ01 polyprotein gene, complete cds	18276	18276	100%	0.0	99%	KU820898.1
Select seq gb|KX056898.1|	Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds	18273	18273	100%	0.0	99%	KX056898.1
Select seq gb|KU955590.1|	Zika virus isolate Z16019 polyprotein gene, complete cds	18273	18273	100%	0.0	99%	KU955590.1
Select seq gb|KX766028.1|	Zika virus isolate R114916, complete genome	18269	18269	100%	0.0	99%	KX766028.1
Select seq gb|KU740184.2|	Zika virus isolate GD01 polyprotein gene, complete cds	18267	18267	100%	0.0	99%	KU740184.2

[niman]

LOCUS       KY014298               10364 bp    RNA     linear   VRL 21-OCT-2016
DEFINITION  Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-032-URI
            polyprotein gene, complete cds.
ACCESSION   KY014298
VERSION     KY014298.1
DBLINK      BioProject: PRJNA344504
            BioSample: SAMN05844992
KEYWORDS    .
SOURCE      Zika virus
  ORGANISM  Zika virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Flaviviridae; Flavivirus.
REFERENCE   1  (bases 1 to 10364)
  AUTHORS   Baniecki,M.L., Barnes,K.G., Bosch,I., Cannons,A., Cone,M.,
            Freije,C.A., Gehrke,L., Gladden-Young,A.D., Gnirke,A., Hogan,K.,
            Isern,S., Kopp,E., Luo,C.Y., MacInnis,B., Matranga,C.B.,
            Metsky,H.C., Michael,S., Park,D.J., Qu,J., Sabeti,P.C., Tan,A.,
            Tomkins-Tinch,C.H., West,K.L., Winnicki,S., Wohl,S. and
            Yozwiak,N.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-OCT-2016) Viral Genomics, Infectious Disease Program
            (Infectious Disease Initiative), Broad Institute, 75 Ames St,
            Cambridge, MA 02142, USA
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: github.com/broadinstitute/viral-ngs v.
                                     v1.11.0-119-g0edb62f-dirty
            Assembly Name         :: USA_2016_FL-032_URI-1
            Sequencing Technology :: Illumina; Swift LC
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..10364
                     /organism="Zika virus"
                     /mol_type="genomic RNA"
                     /isolate="Zika virus/H.sapiens-wt/USA/2016/FL-032-URI"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:64320"
                     /country="USA: Dade County, FL"
                     /collection_date="05-Aug-2016"
                     /collected_by="Florida Department of Health, Florida, USA"
     5'UTR           <1..68
     CDS             69..10340
                     /note="contains structural and nonstructural proteins"
                     /codon_start=1
                     /product="polyprotein"
                     /protein_id="AOY08519.1"
                     /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI
                     RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK
                     RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI
                     MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT
                     LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV
                     IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE
                     LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG
                     NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET
                     DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF
                     HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE
                     MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG
                     TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG
                     EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG
                     AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC
                     SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR
                     MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK
                     SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE
                     CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI
                     EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR
                     GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSVVTA
                     GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA
                     ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT
                     AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL
                     ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE
                     VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD
                     AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY
                     VYVKTGKRSGALWDVPAPKEVKKGETTDGXYRVMTRRLLGSTQVGVGVMQEGVFHTMW
                     HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN
                     IQTLPGIFKTKDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
                     XXXXXHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV
                     PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT
                     KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR
                     RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK
                     VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM
                     EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL
                     PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV
                     LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP
                     QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA
                     SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL
                     LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV
                     VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP
                     NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ
                     MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK
                     VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH
                     MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM
                     ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP
                     VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG
                     SYEAPTQGSASSLVNGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD
                     PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV
                     EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA
                     RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD
                     TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ
                     DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR
                     LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH
                     FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR
                     DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTIEDMLVVWNRVWIEENDHMEDKT
                     PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGXEEKYMDYLST
                     QVRYLGEEGSTPGVL"
     gap             4938..5434
                     /estimated_length=497
     3'UTR           10341..>10364
ORIGIN      
        1 tttgaagcga aagctagcaa cagtatcaac aggttttatt ttggatttgg aaacgagagt
       61 ttctggtcat gaaaaaccca aaaaagaaat ccggaggatt ccggattgtc aatatgctaa
      121 aacgcggagt agcccgtgtg agcccctttg ggggcttgaa gaggctgcca gccggacttc
      181 tgctgggtca tgggcccatc aggatggtct tggcgattct agcctttttg agattcacgg
      241 caatcaagcc atcactgggt ctcatcaata gatggggttc agtggggaaa aaagaggcta
      301 tggaaataat aaagaagttc aagaaagatc tggctgccat gctgagaata atcaatgcta
      361 ggaaggagaa gaagagacga ggcgcagata ctagtgtcgg aattgttggc ctcctgctga
      421 ccacagctat ggcagcggag gtcactagac gtgggagtgc atactacatg tacttggaca
      481 gaaacgatgc tggggaggcc atatcttttc caaccacatt ggggatgaat aagtgttata
      541 tacagatcat ggatcttgga cacatgtgtg atgccaccat gagctatgaa tgccctatgc
      601 tggatgaggg ggtggaacca gatgacgtcg attgttggtg caacacgacg tcaacttggg
      661 ttgtgtacgg aacctgccat cacaaaaaag gtgaagcacg gagatctaga agagctgtga
      721 cgctcccctc ccattccact aggaagctgc aaacgcggtc gcaaacctgg ttggaatcaa
      781 gagaatacac aaagcacttg attagagtcg aaaattggat attcaggaac cctggcttcg
      841 cgttagcagc agctgccatc gcttggcttt tgggaagctc aacgagccaa aaagtcatat
      901 acttggtcat gatactgctg attgccccgg catacagcat caggtgcata ggagtcagca
      961 atagggactt tgtggaaggt atgtcaggtg ggacttgggt tgatgttgtc ttggaacatg
     1021 gaggttgtgt caccgtaatg gcacaggaca aaccgactgt cgacatagag ctggttacaa
     1081 caacagtcag caacatggcg gaggtaagat cctactgcta tgaggcatca atatcagaca
     1141 tggcttcgga cagccgctgc ccaacacaag gtgaagccta ccttgacaag caatcagaca
     1201 ctcaatatgt ctgcaaaaga acgttagtgg acagaggctg gggaaatgga tgtggacttt
     1261 ttggcaaagg gagcctggtg acatgcgcta agtttgcatg ctccaagaaa atgaccggga
     1321 agagcatcca gccagagaat ctggagtacc ggataatgct gtcagttcat ggctcccagc
     1381 acagtgggat gatcgttaat gacacaggac atgaaactga tgagaataga gcgaaggttg
     1441 agataacgcc caattcacca agagccgaag ccaccctggg gggttttgga agcctaggac
     1501 ttgattgtga accgaggaca ggccttgact tctcagattt gtattacttg actatgaata
     1561 acaagcactg gttggttcac aaggagtggt tccacgacat tccattacct tggcacgctg
     1621 gggcagacac cggaactcca cactggaaca acaaagaagc actggtagag ttcaaggacg
     1681 cacatgccaa aaggcaaact gtcgtggttc tagggagtca agaaggagca gttcacacgg
     1741 cccttgctgg agctctggag gctgagatgg atggtgcaaa gggaaggctg tcctctggcc
     1801 acttgaaatg tcgcctgaaa atggataaac ttagattgaa gggcgtgtca tactccttgt
     1861 gtaccgcagc gttcacattc accaagatcc cggctgaaac actgcacggg acagtcacag
     1921 tggaggtaca gtacgcaggg acagatggac cttgcaaggt tccagctcag atggcggtgg
     1981 acatgcaaac tctgacccca gttgggaggt tgataaccgc caaccccgta atcactgaaa
     2041 gcactgagaa ctctaagatg atgctggaac ttgatccacc atttggggac tcttacattg
     2101 tcataggagt cggggagaag aagatcaccc accactggca caggagtggc agcaccattg
     2161 gaaaagcatt tgaagccact gtgagaggtg ccaagagaat ggcagtcttg ggagacacag
     2221 cctgggactt tggatcagtt ggaggcgctc tcaactcatt gggcaagggc atccatcaaa
     2281 tttttggagc agctttcaaa tcattgtttg gaggaatgtc ctggttctca caaatcctca
     2341 ttggaacgtt gctgatgtgg ttgggtctga acacaaagaa tggatctatt tccctcatgt
     2401 gcttggcctt agggggagtg ctgatcttct tatccacagc cgtctctgct gatgtggggt
     2461 gctcggtgga cttctcaaag aaggagacga gatgcggtac aggggtgttc gtctataacg
     2521 acgttgaagc ctggagggac aggtacaagt accatcctga ctccccccgt agattggcag
     2581 cagcagtcaa gcaagcctgg gaagatggta tctgcgggat ctcctctgtt tcaagaatgg
     2641 aaaacatcat gtggagatca gtagaagggg agctcaatgc aatcctggaa gagaatggag
     2701 ttcaactgac ggtcgttgtg ggatctgtaa aaaaccccat gtggagaggt ccacagagat
     2761 tgcccgtgcc tgtgaacgag ctgccccacg gctggaaggc ttgggggaaa tcgtacttcg
     2821 ttagagcagc aaagacaaat aacagctttg tcgtggatgg tgacacactg aaggaatgcc
     2881 cactcaaaca tagagcatgg aacagctttc ttgtggagga tcatgggttc ggggtattcc
     2941 acactagtgt ctggctcaag gttagagaag attattcatt agagtgtgat ccagccgtta
     3001 ttggaacagc tgttaaggga aaggaggctg tacacagtga tctaggctac tggattgaga
     3061 gtgagaagaa tgacacatgg aggctgaaga gggcccatct gatcgagatg aaaacatgtg
     3121 aatggccaaa gtcccacaca ttgtggacag atggaataga agagagtgat ctgatcatac
     3181 ccaagtcttt agctgggcca ctcagccatc acaataccag agagggctac aggacccaaa
     3241 tgaaagggcc atggcacagt gaagagcttg aaattcggtt tgaggaatgc ccaggcacta
     3301 aggtccacgt ggaggaaaca tgtggaacaa gaggaccatc tctgagatca accactgcaa
     3361 gcggaagggt gatcgaggaa tggtgctgca gggagtgcac aatgccccca ctgtcgttcc
     3421 gggctaaaga tggctgttgg tatggaatgg agataaggcc caggaaagaa ccagaaagca
     3481 acttagtaag gtcagtggtg actgcaggat caactgatca catggatcac ttctcccttg
     3541 gagtgcttgt gattctgctc atggtgcagg aagggctgaa gaagagaatg accacaaaga
     3601 tcatcataag cacatcaatg gcagtgctgg tagctatgat cctgggagga ttttcaatga
     3661 gtgacctggc taagcttgca attttgatgg gtgccacctt cgcggaaatg aacactggag
     3721 gagatgtagc tcatctggcg ctgatagcgg cattcaaagt cagaccagcg ttgctggtat
     3781 ctttcatctt cagagctaat tggacacccc gtgaaagcat gctgctggcc ttggcctcgt
     3841 gtcttttgca aactgcgatc tccgccttgg aaggcgacct gatggttctc atcaatggtt
     3901 ttgctttggc ctggttggca atacgagcga tggttgttcc acgcactgat aacatcacct
     3961 tggcaatcct ggctgctctg acaccactgg cccggggcac actgcttgtg gcgtggagag
     4021 caggccttgc tacttgcggg gggtttatgc tcctctctct gaagggaaaa ggcagtgtga
     4081 agaagaactt accatttgtc atggccctgg gactaaccgc tgtgagactg gtcgacccca
     4141 tcaacgtggt gggactgctg ttgctcacaa ggagtgggaa gcggagctgg ccccctagcg
     4201 aagtactcac agctgttggc ctgatatgcg cattggctgg agggttcgcc aaggcagata
     4261 tagagatggc tgggcccatg gccgcggtcg gtctgctaat tgtcagttac gtggtctcag
     4321 gaaagagtgt ggacatgtac attgaaagag caggtgacat cacatgggaa aaagatgcgg
     4381 aagtcactgg aaacagtccc cggctcgatg tggcgctaga tgagagtggt gatttctccc
     4441 tggtggagga tgacggtccc cccatgagag agatcatact caaggtggtc ctgatgacca
     4501 tctgtggcat gaacccaata gccatmccct ttgcagctgg agcgtggtac gtatacgtga
     4561 agactggaaa aaggagtggt gctctatggg atgtgcctgc tcccaaggaa gtaaaaaagg
     4621 gggagaccac agatggaktg tacagagtaa tgactcgtag actgctaggt tcaacacaag
     4681 ttggagtggg agttatgcaa gagggggtct ttcacactat gtggcacgtc acaaaaggat
     4741 ccgcgctgag aagcggtgaa gggagacttg atccatactg gggagatgtc aagcaggatc
     4801 tggtgtcata ctgtggtcca tggaagctag atgccgcctg ggacgggcac agcgaggtgc
     4861 agctcttggc cgtgcccccc ggagagagag cgaggaacat ccagactctg cccggaatat
     4921 ttaagacaaa ggatggg                                              
          [gap 497 bp]    Expand Ns
     5435                                      ccactt cacagatccc tcaagtatag
     5461 cagcaagagg atacatttca acaagggttg agatgggcga ggcggctgcc atcttcatga
     5521 ccgccacgcc accaggaacc cgtgacgcat ttccggactc caactcacca attatggaca
     5581 ccgaagtgga agtcccagag agagcctgga gctcaggctt tgattgggtg acggatcatt
     5641 ctggaaaaac agtttggttt gttccaagcg tgaggaacgg caatgagatc gcagcttgtc
     5701 tgacaaaggc tggaaaacgg gtcatacagc tcagcagaaa gacttttgag acagagttcc
     5761 agaaaacaaa acatcaagag tgggactttg tcgtgacaac cgacatttca gagatgggcg
     5821 ccaactttaa agctgaccgt gtcatagatt ccaggagatg cctaaagccg gtcatacttg
     5881 atggcgagag agtcattctg gctggaccca tgcctgtcac acatgccagc gctgcccaga
     5941 ggagggggcg cataggcagg aatcccaaca aacctggaga tgagtatctg tatggaggtg
     6001 ggtgcgcaga gactgacgaa gaccatgcac actggcttga agcaagaatg ctccttgaca
     6061 atatttacct ccaagatggc ctcatagcct cgctctatcg acctgaggcc gacaaagtag
     6121 cagccattga gggagagttc aagcttagga cggagcaaag gaagaccttt gtggaactca
     6181 tgaaaagagg agatcttcct gtttggctgg cctatcaggt tgcatctgcc ggaataactt
     6241 acacagatag aagatggtgc tttgatggca cgaccaacaa caccataatg gaagacagtg
     6301 tgccggcaga ggtgtggacc agacacggag agaaaagagt gctcaaaccg aggtggatgg
     6361 acgccagagt ttgttcagat catgcggccc tgaagtcatt caaggagttt gccgctggga
     6421 aaagaggagc ggcttttgga gtgatggaag ccctgggaac actgccagga cacatgacag
     6481 agagattcca ggaagccatt gacaacctcg ctgtgctcat gcgggcagag actggaagca
     6541 ggccttacaa agccgcggcg gcccaattgc cggagaccct agagaccatt atgcttttgg
     6601 ggttgctggg aacagtctcg ctgggaatct ttttcgtctt gatgaggaac aagggcatag
     6661 ggaagatggg ctttggaatg gtgactcttg gggccagcgc atggctcatg tggctctcgg
     6721 aaattgagcc agccagaatt gcatgtgtcc tcattgttgt gttcctattg ctggtggtgc
     6781 tcatacctga gccagaaaag caaagatctc cccaggacaa ccaaatggca atcatcatca
     6841 tggtagcagt aggtcttctg ggcttgatca ccgccaatga actcggatgg ttggagagaa
     6901 caaagagtga cctaagccat ctaatgggaa ggagagagga gggagcaacc ataggattct
     6961 caatggacat tgacctgcgg ccagcctcag cttgggccat ctatgctgcc ttgacaactt
     7021 tcattacccc agccgtccaa catgcagtga ccacttcata caacaactac tccttaatgg
     7081 cgatggccac gcaagctgga gtgttgtttg gtatgggcaa agggatgcca ttctacgcat
     7141 gggactttgg agtcccgctg ctaatgatag gttgctactc acaattaaca cccctgaccc
     7201 taatagtggc catcattttg ctcgtggcgc actacatgta cttgatccca gggctgcagg
     7261 cagcagctgc gcgtgctgcc cagaagagaa cggcagctgg catcatgaag aaccctgttg
     7321 tggatggaat agtggtgact gacattgaca caatgacaat tgacccccaa gtggagaaaa
     7381 agatgggaca ggtgctactc atagcagtag ccgtctccag cgccatactg tcgcggaccg
     7441 cctgggggtg gggggaggct ggggccctga tcacagccgc aacttccact ttgtgggaag
     7501 gctctccgaa caagtactgg aactcctcta cagccacttc actgtgtaac atttttaggg
     7561 ggagttactt ggctggagct tctctaatct acacagtaac aagaaacgct ggcttggtca
     7621 agagacgtgg gggtggaaca ggagagaccc tgggagagaa atggaaggcc cgcttgaacc
     7681 agatgtcggc cctggagttc tactcctaca aaaagtcagg catcaccgag gtgtgcagag
     7741 aagaggcccg ccgcgccctc aaggacggtg tggcaacggg aggccatgct gtgtcccgag
     7801 gaagtgcaaa gctgagatgg ttggtggagc ggggatacct gcagccctat ggaaaggtca
     7861 ttgatcttgg atgtggcaga gggggctgga gttactacgc cgccaccatc cgcaaagttc
     7921 aagaagtgaa aggatacaca aaaggaggcc ctggtcatga agaacctgtg ttggtgcaaa
     7981 gctatgggtg gaacatagtc cgtctcaaga gtggggtgga cgtctttcat atggcggctg
     8041 agccgtgtga cacgttgctg tgtgacatag gtgagtcatc atctagtcct gaagtggaag
     8101 aagcacggac gctcagagtc ctctccatgg tgggggattg gcttgaaaaa agaccaggag
     8161 ccttttgtat aaaagtgttg tgcccataca ccagcactat gatggaaacc ttggagcggc
     8221 tgcagcgtag gtatggggga ggactggtca gagtgccact ctcccgcaac tctacacatg
     8281 agatgtactg ggtctctgga gcgaaaagca acaccataaa aagtgtgtcc accacgagcc
     8341 agctcctctt ggggcgcatg gacgggccta ggaggccagt gaaatatgag gaggatgtga
     8401 atctcggctc tggcacgcgg gctgtggtaa gctgcgctga agctcccaac atgaagatca
     8461 ttggtaaccg cattgaaagg atccgcagtg agcacgcgga aacgtggttc tttgacgaga
     8521 accacccata taggacatgg gcttaccatg gaagctatga ggcccctaca caagggtcag
     8581 catcctctct agtaaacggg gttgtcaggc tcctgtcaaa accctgggat gtggtgactg
     8641 gagtcacagg aatagccatg accgacacca caccgtatgg tcagcaaaga gttttcaagg
     8701 aaaaagtgga cactagggtg ccagaccccc aagaaggcac tcgtcaggtt atgagcatgg
     8761 tctcttcctg gttgtggaaa gagctaggca aacacaaacg gccacgagtc tgcaccaaag
     8821 aagagttcat caacaaggtt cgtagcaatg cagcattagg ggcaatattt gaagaggaaa
     8881 aagagtggaa gactgcagtg gaagctgtga acgatccaag gttctgggct ctagtggaca
     8941 aggaaagaga gcaccacctg agaggagagt gccagagttg tgtgtacaac atgatgggaa
     9001 aaagagaaaa gaaacaaggg gaatttggaa aggccaaggg cagccgcgcc atctggtata
     9061 tgtggctagg ggctagattt ctagagttcg aagcccttgg attcttgaac gaggatcact
     9121 ggatggggag agagaactca ggaggtggtg ttgaagggct gggattacaa agactcggat
     9181 atgtcctaga agagatgagt cgcataccag gaggaaggat gtatgcagat gacactgctg
     9241 gctgggatac ccgcatcagc aggtttgatc tagagaatga agctctaatc accaaccaaa
     9301 tggagaargg gcacagggcc ttggcattgg ccataatcaa gtacacatac caaaataaag
     9361 tggtaaaggt ccttagacca gctgaaaaag ggaaaacagt tatggacatt atttcgagac
     9421 aagaccaaag ggggagcgga caagttgtca cttacgctct taacacattt accaacctag
     9481 tggtgcaact cattcggaat atggaggctg aggaagttct agagatgcaa gacttgtggc
     9541 tgctgcggag gtcagagaaa gtgaccaact ggttgcagag caacggatgg gataggctca
     9601 aacgaatggc agtcagtgga gatgattgcg ttgtgaagcc aattgatgat aggtttgcac
     9661 atgccctcag gttcttgaat gatatgggaa aagttaggaa ggacacacaa gagtggaaac
     9721 cctcaactgg atgggacaac tgggaagaag ttccgttttg ctcccaccac ttcaacaagc
     9781 tccatctcaa ggacgggagg tccattgtgg ttccctgccg ccaccaagat gaactgattg
     9841 gccgggcccg cgtctctcca ggggcgggat ggagcatccg ggagactgct tgcctagcaa
     9901 aatcatatgc gcaaatgtgg cagctccttt atttccacag aagggacctc cgactgatgg
     9961 ccaatgccat ttgttcatct gtgccagttg actgggttcc aactgggaga actacctggt
    10021 caatccatgg aaagggagaa tggatgacca ttgaagacat gcttgtggtg tggaacagag
    10081 tgtggattga ggagaacgac cacatggaag acaagacccc agttacgaaa tggacagaca
    10141 ttccctattt gggaaaaagg gaagacttgt ggtgtggatc tctcataggg cacagaccgc
    10201 gcaccacctg ggctgagaac attaaaaaca cagtcaacat ggtgcgcagg atcataggtk
    10261 aggaagaaaa gtacatggac tacctatcca cccaagttcg ctacttgggt gaagaagggt
    10321 ctacacctgg agtgctgtaa gcaccaatct taatgttgtc aggc

[niman]

Sequences producing significant alignments:

Select:AllNone Selected:0

AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments

Sequences producing significant alignments:

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
Select seq gb|KY014298.1|	Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-032-URI polyprotein gene, complete cds	8776	8776	100%	0.0	100%	KY014298.1
Select seq gb|KX922705.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds	8776	8776	100%	0.0	99%	KX922705.1
Select seq gb|KY014322.1|	Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-03-MOS polyprotein gene, complete cds	8771	8771	100%	0.0	99%	KY014322.1
Select seq gb|KX838906.2|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds	8771	8771	100%	0.0	99%	KX838906.2
Select seq gb|KY014299.1|	Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-04-MOS polyprotein gene, complete cds	8767	8767	100%	0.0	99%	KY014299.1
Select seq gb|KX922708.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds	8767	8767	100%	0.0	99%	KX922708.1
Select seq gb|KY014304.1|	Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0180-SER polyprotein gene, complete cds	8749	8749	100%	0.0	99%	KY014304.1
Select seq gb|KU853013.1|	Zika virus isolate Dominican Republic/2016/PD2, complete genome	8749	8749	100%	0.0	99%	KU853013.1
Select seq gb|KU853012.1|	Zika virus isolate Dominican Republic/2016/PD1, complete genome	8745	8745	100%	0.0	99%	KU853012.1
Select seq gb|KY014300.1|	Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0208-SER polyprotein gene, complete cds	8744	8744	100%	0.0	99%	KY014300.1
Select seq gb|KX673530.1|	Zika virus isolate PHE_semen_Guadeloupe, complete genome	8744	8744	100%	0.0	99%	KX673530.1
Select seq gb|KY014321.1|	Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0115-SER polyprotein gene, complete cds	8740	8740	100%	0.0	99%	KY014321.1
Select seq dbj|LC190723.1|	Zika virus genomic RNA, complete genome, strain: ZIKV/Hu/Yokohama/1/2016	8740	8740	100%	0.0	99%	LC190723.1
Select seq gb|KX922707.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds	8740	8740	100%	0.0	99%	KX922707.1
Select seq gb|KY014323.1|	Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-02-MOS polyprotein gene, complete cds	8735	8735	100%	0.0	99%	KY014323.1
Select seq gb|KY014316.1|	Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-039-URI polyprotein gene, complete cds	8735	8735	100%	0.0	99%	KY014316.1
Select seq gb|KY014295.1|	Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-010-URI polyprotein gene, complete cds	8735	8735	100%	0.0	99%	KY014295.1
Select seq gb|KX922704.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds	8735	8735	100%	0.0	99%	KX922704.1
Select seq gb|KX842449.2|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds	8735	8735	100%	0.0	99%	KX842449.2
Select seq gb|KX838905.2|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds	8735	8735	100%	0.0	99%	KX838905.2
Select seq gb|KX922706.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds	8733	8733	100%	0.0	99%	KX922706.1
Select seq gb|KX922703.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds	8731	8731	100%	0.0	99%	KX922703.1
Select seq gb|KX832731.1|	Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds	8731	8731	100%	0.0	99%	KX832731.1
Select seq gb|KY014314.1|	Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0436-SER polyprotein gene, complete cds	8725	8725	100%	0.0	99%	KY014314.1
Select seq gb|KX838904.2|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds	8724	8724	100%	0.0	99%	KX838904.2
Select seq gb|KY014324.1|	Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-01-MOS polyprotein gene, complete cds	8722	8722	100%	0.0	99%	KY014324.1
Select seq gb|KX447518.1|	Zika virus isolate 1_0117_PF polyprotein gene, partial cds	8716	8716	100%	0.0	99%	KX447518.1
Select seq gb|KX280026.1|	Zika virus isolate Paraiba_01, complete genome	8716	8716	100%	0.0	99%	KX280026.1
Select seq gb|KX879604.1|	Zika virus isolate SN089, complete genome	8713	8713	100%	0.0	99%	KX879604.1
Select seq gb|KX447510.1|	Zika virus isolate 1_0049_PF polyprotein gene, complete cds	8713	8713	100%	0.0	99%	KX447510.1
Select seq gb|KX879603.1|	Zika virus isolate SN062, complete genome	8707	8707	100%	0.0	99%	KX879603.1
Select seq gb|KX447513.1|	Zika virus isolate 1_0134_PF polyprotein gene, complete cds	8707	8707	100%	0.0	99%	KX447513.1
Select seq gb|KU509998.3|	Zika virus strain Haiti/1225/2014, complete genome	8707	8707	100%	0.0	99%	KU509998.3
Select seq gb|KU926310.1|	Zika virus isolate Rio-S1, complete genome	8707	8707	100%	0.0	99%	KU926310.1
Select seq gb|KU729218.1|	Zika virus isolate BeH828305 polyprotein gene, complete cds	8707	8707	100%	0.0	99%	KU729218.1
Select seq gb|KX811222.1|	Zika virus isolate Brazil_2015_MG, complete genome	8704	8704	100%	0.0	99%	KX811222.1
Select seq gb|KX197205.1|	Zika virus isolate 9, complete genome	8704	8704	100%	0.0	99%	KX197205.1
Select seq gb|KX447521.1|	Zika virus isolate 1_0080_PF polyprotein gene, partial cds	8704	8704	100%	0.0	99%	KX447521.1
Select seq gb|KX447512.1|	Zika virus isolate 1_0181_PF polyprotein gene, complete cds	8704	8704	100%	0.0	99%	KX447512.1
Select seq gb|KX447509.1|	Zika virus isolate 1_0087_PF polyprotein gene, complete cds	8704	8704	100%	0.0	99%	KX447509.1
Select seq gb|KX369547.1|	Zika virus strain PF13/251013-18, complete genome	8704	8704	100%	0.0	99%	KX369547.1
Select seq gb|KX262887.1|	Zika virus isolate 103451, complete genome	8704	8704	100%	0.0	99%	KX262887.1
Select seq gb|KU940228.1|	Zika virus isolate Bahia07, partial genome	8704	8704	100%	0.0	99%	KU940228.1
Select seq gb|KU729217.2|	Zika virus isolate BeH823339 polyprotein gene, complete cds	8704	8704	100%	0.0	99%	KU729217.2
Select seq gb|KU707826.1|	Zika virus isolate SSABR1, complete genome	8704	8704	100%	0.0	99%	KU707826.1
Select seq gb|KU365779.1|	Zika virus strain BeH819966 polyprotein gene, complete cds	8704	8704	100%	0.0	99%	KU365779.1
Select seq gb|KJ776791.2|	Zika virus strain H/PF/2013, complete genome	8698	8698	100%	0.0	99%	KJ776791.2
Select seq gb|KX447515.1|	Zika virus isolate 1_0030_PF polyprotein gene, complete cds	8698	8698	100%	0.0	99%	KX447515.1
Select seq gb|KX247632.1|	Zika virus isolate MEX_I_7 polyprotein gene, complete cds	8698	8698	100%	0.0	99%	KX247632.1
Select seq gb|KU365780.1|	Zika virus strain BeH815744 polyprotein gene, complete cds	8698	8698	100%	0.0	99%	KU365780.1
Select seq gb|KU365777.1|	Zika virus strain BeH818995 polyprotein gene, complete cds	8698	8698	100%	0.0	99%	KU365777.1
Select seq gb|KU321639.1|	Zika virus strain ZikaSPH2015, complete genome	8698	8698	100%	0.0	99%	KU321639.1
Select seq gb|KX447514.1|	Zika virus isolate 1_0035_PF polyprotein gene, complete cds	8695	8695	100%	0.0	99%	KX447514.1
Select seq gb|KX447511.1|	Zika virus isolate 1_0015_PF polyprotein gene, complete cds	8695	8695	100%	0.0	99%	KX447511.1
Select seq gb|KX197192.1|	Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome	8695	8695	100%	0.0	99%	KX197192.1
Select seq gb|KX051563.1|	Zika virus isolate Haiti/1/2016, complete genome	8695	8695	100%	0.0	99%	KX051563.1
Select seq gb|KU501217.1|	Zika virus strain 8375 polyprotein gene, complete cds	8695	8695	100%	0.0	99%	KU501217.1
Select seq gb|KU501216.1|	Zika virus strain 103344 polyprotein gene, complete cds	8695	8695	100%	0.0	99%	KU501216.1
Select seq gb|KY014309.1|	Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ47D1-PLA polyprotein gene, partial cds	8693	8693	100%	0.0	99%	KY014309.1
Select seq gb|KY014297.1|	Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-6864-URI polyprotein gene, complete cds	8691	8691	100%	0.0	99%	KY014297.1
Select seq gb|KY014317.1|	Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ28D1-URI polyprotein gene, complete cds	8689	8689	100%	0.0	99%	KY014317.1
Select seq gb|KX856011.1|	Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome	8689	8689	100%	0.0	99%	KX856011.1
Select seq gb|KX694534.1|	Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome	8689	8689	100%	0.0	99%	KX694534.1
Select seq gb|KX447520.1|	Zika virus isolate 1_0016_PF polyprotein gene, partial cds	8689	8689	100%	0.0	99%	KX447520.1
Select seq gb|KX447516.1|	Zika virus isolate 1_0111_PF polyprotein gene, complete cds	8689	8689	100%	0.0	99%	KX447516.1
Select seq gb|KX446951.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome	8689	8689	100%	0.0	99%	KX446951.1
Select seq gb|KU991811.1|	Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds	8689	8689	100%	0.0	99%	KU991811.1
Select seq gb|KU926309.1|	Zika virus isolate Rio-U1, complete genome	8689	8689	100%	0.0	99%	KU926309.1
Select seq gb|KU365778.1|	Zika virus strain BeH819015 polyprotein gene, complete cds	8689	8689	100%	0.0	99%	KU365778.1
Select seq gb|KY014327.1|	Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME167-PLA polyprotein gene, complete cds	8686	8686	100%	0.0	99%	KY014327.1
Select seq gb|KY014307.1|	Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ49D1-PLA polyprotein gene, complete cds	8686	8686	99%	0.0	99%	KY014307.1
Select seq gb|KY014306.1|	Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME178-PLA polyprotein gene, complete cds	8686	8686	99%	0.0	99%	KY014306.1
Select seq gb|KX806557.2|	Zika virus isolate TS17-2016, complete genome	8686	8686	100%	0.0	99%	KX806557.2
Select seq gb|KX520666.1|	Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds	8686	8686	100%	0.0	99%	KX520666.1
Select seq gb|KU758877.1|	Zika virus isolate 17271 polyprotein gene, complete cds	8686	8686	100%	0.0	99%	KU758877.1
Select seq gb|KU527068.1|	Zika virus strain Natal RGN, complete genome	8686	8686	100%	0.0	99%	KU527068.1
Select seq gb|KY014315.1|	Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME152-SER polyprotein gene, complete cds	8682	8682	100%	0.0	99%	KY014315.1
Select seq gb|KX766029.1|	Zika virus isolate R116265, complete genome	8680	8680	100%	0.0	99%	KX766029.1
Select seq gb|KX446950.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome	8680	8680	100%	0.0	99%	KX446950.1
Select seq gb|KU501215.1|	Zika virus strain PRVABC59, complete genome	8680	8680	100%	0.0	99%	KU501215.1
Select seq gb|KY014310.1|	Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME42-SER polyprotein gene, complete cds	8679	8679	100%	0.0	99%	KY014310.1
Select seq gb|KX601168.1|	Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome	8677	8677	100%	0.0	99%	KX601168.1
Select seq gb|KX377337.1|	Zika virus strain PRVABC-59, complete genome	8677	8677	100%	0.0	99%	KX377337.1
Select seq gb|KX087101.2|	Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome	8677	8677	100%	0.0	99%	KX087101.2
Select seq gb|KU937936.1|	Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds	8677	8677	100%	0.0	99%	KU937936.1
Select seq gb|KU955590.1|	Zika virus isolate Z16019 polyprotein gene, complete cds	8677	8677	100%	0.0	99%	KU955590.1
Select seq gb|KU497555.1|	Zika virus isolate Brazil-ZKV2015, complete genome	8677	8677	100%	0.0	99%	KU497555.1
Select seq gb|KU312312.1|	Zika virus isolate Z1106033 polyprotein gene, complete cds	8677	8677	100%	0.0	99%	KU312312.1
Select seq gb|KY014303.1|	Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0127-SER polyprotein gene, complete cds	8671	8671	100%	0.0	99%	KY014303.1
Select seq gb|KX198135.1|	Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome	8671	8671	100%	0.0	99%	KX198135.1
Select seq gb|KX056898.1|	Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds	8671	8671	100%	0.0	99%	KX056898.1
Select seq gb|KU870645.1|	Zika virus isolate FB-GWUH-2016, complete genome	8671	8671	100%	0.0	99%	KU870645.1
Select seq gb|KX447517.1|	Zika virus isolate 1_0038_PF polyprotein gene, complete cds	8668	8668	100%	0.0	99%	KX447517.1
Select seq gb|KY014296.1|	Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ131D1-URI polyprotein gene, complete cds	8662	8662	100%	0.0	99%	KY014296.1
Select seq gb|KX156776.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome	8662	8662	100%	0.0	99%	KX156776.1
Select seq gb|KX117076.1|	Zika virus isolate Zhejiang04, complete genome	8662	8662	100%	0.0	99%	KX117076.1
Select seq gb|KX766028.1|	Zika virus isolate R114916, complete genome	8661	8661	100%	0.0	99%	KX766028.1
Select seq gb|KX253996.1|	Zika virus isolate ZKC2/2016, complete genome	8659	8659	100%	0.0	99%	KX253996.1
Select seq gb|KX247646.1|	Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome	8659	8659	100%	0.0	99%	KX247646.1
Select seq gb|KX185891.1|	Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds	8659	8659	100%	0.0	99%	KX185891.1

[niman]

Sequences producing significant alignments:

Select:AllNone Selected:0

AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments

Sequences producing significant alignments:

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
Select seq gb|KY014322.1|	Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-03-MOS polyprotein gene, complete cds	8843	8843	100%	0.0	99%	KY014322.1
Select seq gb|KY014298.1|	Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-032-URI polyprotein gene, complete cds	8843	8843	100%	0.0	100%	KY014298.1
Select seq gb|KX922705.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds	8843	8843	100%	0.0	99%	KX922705.1
Select seq gb|KX838906.2|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds	8843	8843	100%	0.0	99%	KX838906.2
Select seq gb|KX922708.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds	8828	8828	100%	0.0	99%	KX922708.1
Select seq gb|KY014299.1|	Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-04-MOS polyprotein gene, complete cds	8825	8825	100%	0.0	99%	KY014299.1
Select seq gb|KY014304.1|	Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0180-SER polyprotein gene, complete cds	8801	8801	100%	0.0	99%	KY014304.1
Select seq gb|KY014300.1|	Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0208-SER polyprotein gene, complete cds	8798	8798	100%	0.0	99%	KY014300.1
Select seq gb|KY014295.1|	Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-010-URI polyprotein gene, complete cds	8798	8798	100%	0.0	99%	KY014295.1
Select seq gb|KX842449.2|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds	8798	8798	100%	0.0	99%	KX842449.2
Select seq gb|KU853012.1|	Zika virus isolate Dominican Republic/2016/PD1, complete genome	8794	8794	100%	0.0	99%	KU853012.1
Select seq dbj|LC190723.1|	Zika virus genomic RNA, complete genome, strain: ZIKV/Hu/Yokohama/1/2016	8792	8792	100%	0.0	99%	LC190723.1
Select seq gb|KX673530.1|	Zika virus isolate PHE_semen_Guadeloupe, complete genome	8792	8792	100%	0.0	99%	KX673530.1
Select seq gb|KU853013.1|	Zika virus isolate Dominican Republic/2016/PD2, complete genome	8792	8792	100%	0.0	99%	KU853013.1
Select seq gb|KY014325.1|	Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-030-URI polyprotein gene, complete cds	8789	8789	100%	0.0	99%	KY014325.1
Select seq gb|KY014321.1|	Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0115-SER polyprotein gene, complete cds	8789	8789	100%	0.0	99%	KY014321.1
Select seq gb|KY014314.1|	Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0436-SER polyprotein gene, complete cds	8789	8789	100%	0.0	99%	KY014314.1
Select seq gb|KX922704.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds	8789	8789	100%	0.0	99%	KX922704.1
Select seq gb|KX922703.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds	8789	8789	100%	0.0	99%	KX922703.1
Select seq gb|KX832731.1|	Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds	8789	8789	100%	0.0	99%	KX832731.1
Select seq gb|KX838904.2|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds	8785	8785	100%	0.0	99%	KX838904.2
Select seq gb|KY014324.1|	Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-01-MOS polyprotein gene, complete cds	8783	8783	100%	0.0	99%	KY014324.1
Select seq gb|KY014323.1|	Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-02-MOS polyprotein gene, complete cds	8783	8783	100%	0.0	99%	KY014323.1
Select seq gb|KX922706.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds	8783	8783	100%	0.0	99%	KX922706.1
Select seq gb|KX838905.2|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds	8783	8783	100%	0.0	99%	KX838905.2
Select seq gb|KX922707.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds	8774	8774	100%	0.0	99%	KX922707.1
Select seq gb|KY014316.1|	Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-039-URI polyprotein gene, complete cds	8772	8772	100%	0.0	99%	KY014316.1
Select seq gb|KU991811.1|	Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds	8756	8756	100%	0.0	99%	KU991811.1
Select seq gb|KU729217.2|	Zika virus isolate BeH823339 polyprotein gene, complete cds	8753	8753	100%	0.0	99%	KU729217.2
Select seq gb|KY014303.1|	Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0127-SER polyprotein gene, complete cds	8747	8747	100%	0.0	99%	KY014303.1
Select seq gb|KU647676.1|	Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds	8747	8747	100%	0.0	99%	KU647676.1
Select seq gb|KJ776791.2|	Zika virus strain H/PF/2013, complete genome	8744	8744	100%	0.0	99%	KJ776791.2
Select seq gb|KX447512.1|	Zika virus isolate 1_0181_PF polyprotein gene, complete cds	8744	8744	100%	0.0	99%	KX447512.1
Select seq gb|KX447510.1|	Zika virus isolate 1_0049_PF polyprotein gene, complete cds	8744	8744	100%	0.0	99%	KX447510.1
Select seq gb|KX548902.1|	Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds	8744	8744	100%	0.0	99%	KX548902.1
Select seq gb|KX369547.1|	Zika virus strain PF13/251013-18, complete genome	8744	8744	100%	0.0	99%	KX369547.1
Select seq gb|KX247646.1|	Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome	8744	8744	100%	0.0	99%	KX247646.1
Select seq gb|KX893855.1|	Zika virus strain Zika virus/Homo sapiens/VEN/UF-2/2016, complete genome	8738	8738	100%	0.0	99%	KX893855.1
Select seq gb|KU820897.5|	Zika virus isolate FLR polyprotein gene, complete cds	8738	8738	100%	0.0	99%	KU820897.5
Select seq gb|KX702400.1|	Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome	8738	8738	100%	0.0	99%	KX702400.1
Select seq gb|KX447511.1|	Zika virus isolate 1_0015_PF polyprotein gene, complete cds	8738	8738	100%	0.0	99%	KX447511.1
Select seq gb|KX447509.1|	Zika virus isolate 1_0087_PF polyprotein gene, complete cds	8738	8738	100%	0.0	99%	KX447509.1
Select seq gb|KX280026.1|	Zika virus isolate Paraiba_01, complete genome	8738	8738	100%	0.0	99%	KX280026.1
Select seq gb|KX198135.1|	Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome	8738	8738	100%	0.0	99%	KX198135.1
Select seq gb|KX156776.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome	8738	8738	100%	0.0	99%	KX156776.1
Select seq gb|KX156774.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome	8738	8738	100%	0.0	99%	KX156774.1
Select seq gb|KX087102.1|	Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome	8738	8738	100%	0.0	99%	KX087102.1
Select seq gb|KU509998.3|	Zika virus strain Haiti/1225/2014, complete genome	8738	8738	100%	0.0	99%	KU509998.3
Select seq gb|KU527068.1|	Zika virus strain Natal RGN, complete genome	8738	8738	100%	0.0	99%	KU527068.1
Select seq gb|KX811222.1|	Zika virus isolate Brazil_2015_MG, complete genome	8735	8735	100%	0.0	99%	KX811222.1
Select seq gb|KX447517.1|	Zika virus isolate 1_0038_PF polyprotein gene, complete cds	8735	8735	100%	0.0	99%	KX447517.1
Select seq gb|KX447516.1|	Zika virus isolate 1_0111_PF polyprotein gene, complete cds	8735	8735	100%	0.0	99%	KX447516.1
Select seq gb|KX447515.1|	Zika virus isolate 1_0030_PF polyprotein gene, complete cds	8735	8735	100%	0.0	99%	KX447515.1
Select seq gb|KX447514.1|	Zika virus isolate 1_0035_PF polyprotein gene, complete cds	8735	8735	100%	0.0	99%	KX447514.1
Select seq gb|KX156775.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome	8735	8735	100%	0.0	99%	KX156775.1
Select seq gb|KX051563.1|	Zika virus isolate Haiti/1/2016, complete genome	8735	8735	100%	0.0	99%	KX051563.1
Select seq gb|KU926309.1|	Zika virus isolate Rio-U1, complete genome	8735	8735	100%	0.0	99%	KU926309.1
Select seq gb|KU922960.1|	Zika virus isolate MEX/InDRE/Sm/2016, complete genome	8735	8735	100%	0.0	99%	KU922960.1
Select seq gb|KU922923.1|	Zika virus isolate MEX/InDRE/Lm/2016, complete genome	8735	8735	100%	0.0	99%	KU922923.1
Select seq gb|KU321639.1|	Zika virus strain ZikaSPH2015, complete genome	8735	8735	100%	0.0	99%	KU321639.1
Select seq gb|KY014320.1|	Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ42D1-URI polyprotein gene, complete cds	8729	8729	100%	0.0	99%	KY014320.1
Select seq gb|KY014296.1|	Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ131D1-URI polyprotein gene, complete cds	8729	8729	100%	0.0	99%	KY014296.1
Select seq gb|KX197205.1|	Zika virus isolate 9, complete genome	8729	8729	100%	0.0	99%	KX197205.1
Select seq gb|KX694534.1|	Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome	8729	8729	100%	0.0	99%	KX694534.1
Select seq gb|KX447513.1|	Zika virus isolate 1_0134_PF polyprotein gene, complete cds	8729	8729	100%	0.0	99%	KX447513.1
Select seq gb|KX197192.1|	Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome	8729	8729	100%	0.0	99%	KX197192.1
Select seq gb|KU312312.1|	Zika virus isolate Z1106033 polyprotein gene, complete cds	8729	8729	100%	0.0	99%	KU312312.1
Select seq gb|KY014307.1|	Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ49D1-PLA polyprotein gene, complete cds	8725	8725	100%	0.0	99%	KY014307.1
Select seq gb|KX601168.1|	Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome	8725	8725	100%	0.0	99%	KX601168.1
Select seq gb|KU758877.1|	Zika virus isolate 17271 polyprotein gene, complete cds	8725	8725	100%	0.0	99%	KU758877.1
Select seq gb|KX262887.1|	Zika virus isolate 103451, complete genome	8725	8725	100%	0.0	99%	KX262887.1
Select seq gb|KX087101.2|	Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome	8725	8725	100%	0.0	99%	KX087101.2
Select seq gb|KU729218.1|	Zika virus isolate BeH828305 polyprotein gene, complete cds	8725	8725	100%	0.0	99%	KU729218.1
Select seq gb|KU497555.1|	Zika virus isolate Brazil-ZKV2015, complete genome	8725	8725	99%	0.0	99%	KU497555.1
Select seq gb|KU707826.1|	Zika virus isolate SSABR1, complete genome	8725	8725	100%	0.0	99%	KU707826.1
Select seq gb|KU501217.1|	Zika virus strain 8375 polyprotein gene, complete cds	8725	8725	100%	0.0	99%	KU501217.1
Select seq gb|KU501215.1|	Zika virus strain PRVABC59, complete genome	8725	8725	100%	0.0	99%	KU501215.1
Select seq gb|KU365780.1|	Zika virus strain BeH815744 polyprotein gene, complete cds	8725	8725	100%	0.0	99%	KU365780.1
Select seq gb|KU365779.1|	Zika virus strain BeH819966 polyprotein gene, complete cds	8725	8725	100%	0.0	99%	KU365779.1
Select seq gb|KY014315.1|	Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME152-SER polyprotein gene, complete cds	8724	8724	100%	0.0	99%	KY014315.1
Select seq gb|KY014327.1|	Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME167-PLA polyprotein gene, complete cds	8722	8722	100%	0.0	99%	KY014327.1
Select seq gb|KX879604.1|	Zika virus isolate SN089, complete genome	8720	8720	100%	0.0	99%	KX879604.1
Select seq gb|KX856011.1|	Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome	8720	8720	100%	0.0	99%	KX856011.1
Select seq gb|KX446950.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome	8720	8720	100%	0.0	99%	KX446950.1
Select seq gb|KX377337.1|	Zika virus strain PRVABC-59, complete genome	8720	8720	100%	0.0	99%	KX377337.1
Select seq gb|KU501216.1|	Zika virus strain 103344 polyprotein gene, complete cds	8720	8720	100%	0.0	99%	KU501216.1
Select seq gb|KU365777.1|	Zika virus strain BeH818995 polyprotein gene, complete cds	8720	8720	100%	0.0	99%	KU365777.1
Select seq gb|KY014297.1|	Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-6864-URI polyprotein gene, complete cds	8716	8716	100%	0.0	99%	KY014297.1
Select seq gb|KX879603.1|	Zika virus isolate SN062, complete genome	8716	8716	100%	0.0	99%	KX879603.1
Select seq gb|KX520666.1|	Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds	8716	8716	100%	0.0	99%	KX520666.1
Select seq gb|KX446951.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome	8716	8716	100%	0.0	99%	KX446951.1
Select seq gb|KX247632.1|	Zika virus isolate MEX_I_7 polyprotein gene, complete cds	8716	8716	100%	0.0	99%	KX247632.1
Select seq gb|KU937936.1|	Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds	8716	8716	100%	0.0	99%	KU937936.1
Select seq gb|KU940228.1|	Zika virus isolate Bahia07, partial genome	8716	8716	100%	0.0	99%	KU940228.1
Select seq gb|KU940224.1|	Zika virus isolate Bahia09, partial genome	8716	8716	100%	0.0	99%	KU940224.1
Select seq gb|KU870645.1|	Zika virus isolate FB-GWUH-2016, complete genome	8716	8716	100%	0.0	99%	KU870645.1
Select seq gb|KU926310.1|	Zika virus isolate Rio-S1, complete genome	8716	8716	100%	0.0	99%	KU926310.1
Select seq gb|KU820898.1|	Zika virus isolate GZ01 polyprotein gene, complete cds	8716	8716	100%	0.0	99%	KU820898.1
Select seq gb|KU365778.1|	Zika virus strain BeH819015 polyprotein gene, complete cds	8716	8716	100%	0.0	99%	KU365778.1
Select seq gb|KX766029.1|	Zika virus isolate R116265, complete genome	8707	8707	100%	0.0	99%	KX766029.1

[niman]

LOCUS       KY014325               10598 bp    RNA     linear   VRL 21-OCT-2016
DEFINITION  Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-030-URI
            polyprotein gene, complete cds.
ACCESSION   KY014325
VERSION     KY014325.1
DBLINK      BioProject: PRJNA344504
            BioSample: SAMN05844991
KEYWORDS    .
SOURCE      Zika virus
  ORGANISM  Zika virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Flaviviridae; Flavivirus.
REFERENCE   1  (bases 1 to 10598)
  AUTHORS   Baniecki,M.L., Barnes,K.G., Bosch,I., Cannons,A., Cone,M.,
            Freije,C.A., Gehrke,L., Gladden-Young,A.D., Gnirke,A., Hogan,K.,
            Isern,S., Kopp,E., Luo,C.Y., MacInnis,B., Matranga,C.B.,
            Metsky,H.C., Michael,S., Park,D.J., Qu,J., Sabeti,P.C., Tan,A.,
            Tomkins-Tinch,C.H., West,K.L., Winnicki,S., Wohl,S. and
            Yozwiak,N.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-OCT-2016) Viral Genomics, Infectious Disease Program
            (Infectious Disease Initiative), Broad Institute, 75 Ames St,
            Cambridge, MA 02142, USA
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: github.com/broadinstitute/viral-ngs v.
                                     v1.11.0-119-g0edb62f-dirty
            Assembly Name         :: USA_2016_FL-030_URI-1
            Sequencing Technology :: Illumina; Swift LC
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..10598
                     /organism="Zika virus"
                     /mol_type="genomic RNA"
                     /isolate="Zika virus/H.sapiens-wt/USA/2016/FL-030-URI"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:64320"
                     /country="USA: Dade County, FL"
                     /collection_date="02-Aug-2016"
                     /collected_by="Florida Department of Health, Florida, USA"
     5'UTR           <1..67
     CDS             68..10339
                     /note="contains structural and nonstructural proteins"
                     /codon_start=1
                     /product="polyprotein"
                     /protein_id="AOY08546.1"
                     /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI
                     RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK
                     RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI
                     MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT
                     LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV
                     IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE
                     LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG
                     NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEXXXXXXXXXXXXXXXXXXXXXXXX
                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFSDLYYLTMNNKHWLVHKEWF
                     HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE
                     MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG
                     TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG
                     EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG
                     AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC
                     SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR
                     MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK
                     SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE
                     CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI
                     EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR
                     GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSVVTA
                     GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA
                     ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT
                     AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL
                     ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE
                     VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD
                     AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY
                     VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW
                     HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN
                     IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT
                     QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP
                     TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY
                     IXDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV
                     PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT
                     KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR
                     RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK
                     VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM
                     EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL
                     PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV
                     LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP
                     QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA
                     SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL
                     LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV
                     VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP
                     NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ
                     MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK
                     VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH
                     MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM
                     ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP
                     VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG
                     SYEAPTQGSASSLVNGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD
                     PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV
                     EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA
                     RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD
                     TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ
                     DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR
                     LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH
                     FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR
                     DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTIEDMLVVWNRVWIEENDHMEDKT
                     PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGEEEKYMDYLST
                     QVRYLGEEGSTPGVL"
     gap             1346..1528
                     /estimated_length=183
     3'UTR           10340..>10598
ORIGIN      
        1 ttgaagcgaa agctagcaac agtatcaaca ggttttattt tggatttgga aacgagagtt
       61 tctggtcatg aaaaacccaa aaaagaaatc cggaggattc cggattgtca atatgctaaa
      121 acgcggagta gcccgtgtga gcccctttgg gggcttgaag aggctgccag ccggacttct
      181 gctgggtcat gggcccatca ggatggtctt ggcgattcta gcctttttga gattcacggc
      241 aatcaagcca tcactgggtc tcatcaatag atggggttca gtggggaaaa aagaggctat
      301 ggaaataata aagaagttca agaaagatct ggctgccatg ctgagaataa tcaatgctag
      361 gaaggagaag aagagacgag gcgcagatac tagtgtcgga attgttggcc tcctgctgac
      421 cacagctatg gcagcggagg tcactagacg tgggagtgca tactacatgt acttggacag
      481 aaacgatgct ggggaggcca tatctttccc aaccacattg gggatgaata agtgttatat
      541 acagatcatg gatcttggac acatgtgtga tgccaccatg agctatgaat gccctatgct
      601 ggatgagggg gtggaaccag atgacgtcga ttgttggtgc aacacgacgt caacttgggt
      661 tgtgtacgga acctgccatc acaaaaaagg tgaagcacgg agatctagaa gagctgtgac
      721 gctcccctcc cattccacta ggaagctgca aacgcggtcg caaacctggt tggaatcaag
      781 agaatacaca aagcacttga ttagagtcga aaattggata ttcaggaacc ctggcttcgc
      841 gttagcagca gctgccatcg cttggctttt gggaagctca acgagccaaa aagttatata
      901 cttggtcatg atactgctga ttgccccggc atacagcatc aggtgcatag gagtcagcaa
      961 tagggacttt gtggaaggta tgtcaggtgg gacttgggtt gatgttgtct tggaacatgg
     1021 aggctgtgtc accgtaatgg cacaggacaa accgactgtc gacatagagc tggttacaac
     1081 aacagtcagc aacatggcgg aggtaagatc ctactgctat gaggcatcaa tatcagacat
     1141 ggcttcggac agccgctgcc caacacaagg tgaagcctac cttgacaagc aatcagacac
     1201 tcaatatgtc tgcaaaagaa cgttagtgga cagaggctgg ggaaatggat gtggactttt
     1261 tggcaaaggg agcctggtga catgcgctaa gtttgcatgc tccaagaaaa tgaccgggaa
     1321 gagcatccag ccagagaatc tggag                                     
          [gap 183 bp]    Expand Ns
     1529                               tt ttcagatttg tattacttga ctatgaataa
     1561 caagcactgg ttggttcaca aggagtggtt ccacgacatt ccattacctt ggcacgctgg
     1621 ggcagacacc ggaactccac actggaacaa caaagaagca ctggtagagt tcaaggacgc
     1681 acatgccaaa aggcaaactg tcgtggttct aggkagtcaa gaaggagcag ttcacacggc
     1741 ccttgctgga gctctggagg ctgagatgga tggtgcaaag ggaaggctgt cctctggcca
     1801 cttgaaatgt cgcctgaaaa tggataaact tagattgaag ggcgtgtcat actccttgtg
     1861 taccgcagcg ttcacattca ccaagatccc ggctgaaaca ctgcacggga cagtcacagt
     1921 ggaggtacag tacgcaggga cagatggacc ttgcaaggtt ccagctcaga tggcggtgga
     1981 catgcaaact ctgaccccag ttgggaggtt gataaccgcc aaccccgtaa tcactgaaag
     2041 cactgagaac tctaagatga tgctggaact tgatccacca tttggggact cttacattgt
     2101 cataggagtc ggggagaaga agatcaccca ccactggcac aggagtggca gcaccattgg
     2161 aaaagcattt gaagccactg tgagaggtgc caagagaatg gcagtcttgg gagatacagc
     2221 ctgggacttt ggatcagttg gaggcgctct caactcattg ggcaagggca tccatcaaat
     2281 ttttggagca gctttcaaat cattgtttgg aggaatgtcc tggttctcac aaatcctcat
     2341 tggaacgttg ctgatgtggt tgggtctgaa cacaaagaat ggatctattt ccctcatgtg
     2401 cttggcctta gggggagtgt tgatcttctt atccacagcc gtctctgctg atgtggggtg
     2461 ctcggtggac ttctcaaaga aggagacgag atgcggtaca ggggtgttcg tctataacga
     2521 cgttgaagcc tggagggaca ggtacaagta ccatcctgac tccccccgta gattggcagc
     2581 agcagtcaag caagcctggg aagatggtat ctgcgggatc tcctctgttt caagaatgga
     2641 aaacatcatg tggagatcag tagaagggga gctcaatgca atcctggaag agaatggagt
     2701 tcaactgacg gtcgttgtgg gatctgtaaa aaaccccatg tggagaggtc cacagagatt
     2761 gcccgtgcct gtgaacgagc tgccccacgg ctggaaggct tgggggaaat cgtacttcgt
     2821 tagagcagca aagacaaata acagctttgt cgtggatggt gacacactga aggaatgccc
     2881 actcaaacat agagcatgga acagctttct tgtggaggat catgggttcg gggtatttca
     2941 cactagtgtc tggctcaagg ttagagaaga ttattcatta gagtgtgatc cagccgttat
     3001 tggaacagct gttaagggaa aggaggctgt acacagtgat ctaggctact ggattgagag
     3061 tgagaagaat gacacatgga ggctgaagag ggcccatctg atcgagatga aaacatgtga
     3121 atggccaaag tcccacacat tgtggacaga tggaatagaa gagagtgatc tgatcatacc
     3181 caagtcttta gctgggccac tcagccatca caataccaga gagggctaca ggacccaaat
     3241 gaaagggcca tggcacagtg aagagcttga aattcggttt gaggaatgcc caggcactaa
     3301 ggtccacgtg gaggaaacat gtggaacaag aggaccatct ctgagatcaa ccactgcaag
     3361 cggaagggtg atcgaggaat ggtgctgcag ggagtgcaca atgcccccac tgtcgttccg
     3421 ggctaaagat ggctgttggt atggaatgga gataaggccc aggaaagaac cagaaagcaa
     3481 cttagtaagg tcagtggtga ctgcaggatc aactgatcac atggatcact tctcccttgg
     3541 agtgcttgtg attctgctca tggtgcagga agggctgaag aagagaatga ccacaaagat
     3601 catcataagc acatcaatgg cagtgctggt agctatgatc ctgggaggat tttcaatgag
     3661 tgacctggct aagcttgcaa ttttgatggg tgccaccttc gcggaaatga acactggagg
     3721 agatgtagct catctggcgc tgatagcggc attcaaagtc agaccagcgt tgctggtatc
     3781 tttcatcttc agagctaatt ggacaccccg tgaaagcatg ctgctggcct tggcctcgtg
     3841 tcttttgcaa actgcgatct ccgccttgga aggcgacctg atggttctca tcaatggttt
     3901 tgctttggcc tggttggcaa tacgagcgat ggttgttcca cgcactgata acatcacctt
     3961 ggcaatcctg gctgctctga caccactggc ccggggcaca ctgcttgtgg cgtggagagc
     4021 aggccttgct acttgcgggg ggtttatgct cctctctctg aagggaaaag gcagtgtgaa
     4081 gaagaactta ccatttgtca tggccctggg actaaccgct gtgaggctgg tcgaccccat
     4141 caacgtggtg ggactgctgt tgctcacaag gagtgggaag cggagctggc cccctagcga
     4201 agtactcaca gctgttggcc tgatatgcgc attggctgga gggttcgcca aggcagatat
     4261 agagatggct gggcccatgg ccgcggtcgg tctgctaatt gtcagttacg tggtctcagg
     4321 aaagagtgtg gacatgtaca ttgaaagagc aggtgacatc acatgggaaa aagatgcgga
     4381 agtcactgga aacagtcccc ggctcgatgt ggcgctagat gagagtggtg atttctccct
     4441 ggtggaggat gacggtcccc ccatgagaga gatcatactc aaggtggtcc tgatgaccat
     4501 ctgtggcatg aacccaatag ccataccctt tgcagctgga gcgtggtacg tatacgtgaa
     4561 gactggaaaa aggagtggtg ctctatggga tgtgcctgct cccaaggaag taaaaaaggg
     4621 ggagaccaca gatggagtgt acagagtaat gactcgtaga ctgctaggtt caacacaagt
     4681 tggagtggga gttatgcaag agggggtctt tcacactatg tggcacgtca caaaaggatc
     4741 cgcgctgaga agcggtgaag ggagacttga tccatactgg ggagatgtca agcaggatct
     4801 ggtgtcatac tgtggtccat ggaagctaga tgccgcctgg gacgggcaca gcgaggtgca
     4861 gctcttggcc gtgccccccg gagagagagc gaggaacatc cagactctgc ccggaatatt
     4921 taagacaaag gatggggaca ttggagcggt tgcgctggat tacccagcag gaacttcagg
     4981 atccccaatc ctagacaagt gtgggagagt gataggactt tatggcaatg gggtcgtgat
     5041 caaaaatggg agttatgtta gtgccatcac ccaagggagg agggaggaag agactcctgt
     5101 tgagtgcttc gagccttcga tgctgaagaa gaagcagcta actgtcttag acttgcatcc
     5161 tggagctgga aaaaccagga gagttcttcc tgaaatagtc cgtgaagcta taaaaacaag
     5221 actccgtact gtgatcttag ctccaaccag ggttgtcgct gctgaaatgg aggaagccct
     5281 tagagggctt ccagtgcgtt atatgacaac agcagtcaat gtcacccatt ctggaacaga
     5341 aatcgtcgac ttaatgtgcc atgccacctt cacttcacgt ctactacagc caatcagagt
     5401 ccccaactat aatctgtata ttrtggatga ggcccacttc acagatccct caagtatagc
     5461 agcaagagga tacatttcaa caagggttga gatgggcgag gcggctgcca tcttcatgac
     5521 cgccacgcca ccaggaaccc gtgacgcatt tccggactcc aactcaccaa ttatggacac
     5581 cgaagtggaa gtcccagaga gagcctggag ctcaggcttt gattgggtga cggatcattc
     5641 tggaaaaaca gtttggtttg ttccaagcgt gaggaacggc aatgagatcg cagcttgtct
     5701 gacaaaggct ggaaaacggg tcatacagct cagcagaaag acttttgaga cagagttcca
     5761 gaaaacaaaa catcaagagt gggactttgt cgtgacaacc gacatttcag agatgggcgc
     5821 caactttaaa gctgaccgtg tcatagattc caggagatgc ctaaagccgg tcatacttga
     5881 tggcgagaga gtcattctgg ctggacccat gcctgtcaca catgccagcg ctgcccagag
     5941 gagggggcgc ataggcagga atcccaacaa acctggagat gagtatctgt atggaggtgg
     6001 gtgcgcagag actgacgaag accatgcaca ctggcttgaa gcaagaatgc tccttgacaa
     6061 tatttacctc caagatggcc tcatagcctc gctctatcga cctgaggccg acaaagtagc
     6121 agccattgag ggagagttca agcttaggac ggagcaaagg aagacctttg tggaactcat
     6181 gaaaagagga gatcttcctg tttggctggc ctatcaggtt gcatctgccg gaataactta
     6241 cacagataga agatggtgct ttgatggcac gaccaacaac accataatgg aagacagtgt
     6301 gccggcagag gtgtggacca gacacggaga gaaaagagtg ctcaaaccga ggtggatgga
     6361 cgccagagtt tgttcagatc atgcggccct gaagtcattc aaggagtttg ccgctgggaa
     6421 aagaggagcg gcttttggag tgatggaagc cctgggaaca ctgccaggac acatgacaga
     6481 gagattccag gaagccattg acaacctcgc tgtgctcatg cgggcagaga ctggaagcag
     6541 gccttacaaa gccgcggcgg cccaattgcc ggagacccta gagaccatta tgcttttggg
     6601 gttgctggga acagtctcgc tgggaatctt tttcgtcttg atgaggaaca agggcatagg
     6661 gaagatgggc tttggaatgg tgactcttgg ggccagcgca tggctcatgt ggctctcgga
     6721 aattgagcca gccagaattg catgtgtcct cattgttgtg ttcctattgc tggtggtgct
     6781 catacctgag ccagaaaagc aaagatctcc ccaggacaac caaatggcaa tcatcatcat
     6841 ggtagcagta ggtcttctag gcttgatcac cgccaatgaa ctcggatggt tggagagaac
     6901 aaagagtgac ctaagccatc taatgggaag gagagaggag ggagcaacca taggattctc
     6961 aatggacatt gacctgcggc cagcctcagc ttgggccatc tatgctgcct tgacaacttt
     7021 cattacccca gccgtccaac atgcagtgac cacttcatac aacaactact ccttaatggc
     7081 gatggccacg caagctggag tgttgtttgg tatgggcaaa gggatgccat tctacgcatg
     7141 ggactttgga gtcccgctgc taatgatagg ttgctactca caattgacac ccctgaccct
     7201 aatagtggcc atcattttgc tcgtggcgca ctacatgtac ttgatcccag ggctgcaggc
     7261 agcagctgcg cgtgctgccc agaagagaac ggcagctggc atcatgaaga accctgttgt
     7321 ggatggaata gtggtgactg acattgacac aatgacaatt gacccccaag tggagaaaaa
     7381 gatgggacag gtgctactca tagcagtagc cgtctccagc gccatactgt cgcggaccgc
     7441 ctgggggtgg ggggaggctg gggccctgat cacagccgca acttccactt tgtgggaagg
     7501 ctctccgaac aagtactgga actcctctac agccacttca ctgtgtaaca tttttagggg
     7561 aagttacttg gctggagctt ctctaatcta cacagtaaca agaaacgctg gcttggtcaa
     7621 gagacgtggg ggtggaacag gagagaccct gggagagaaa tggaaggccc gcttgaacca
     7681 gatgtcggcc ctggagttct actcctacaa aaagtcaggc atcaccgagg tgtgcagaga
     7741 agaggcccgc cgcgccctca aggacggtgt ggcaacggga ggccatgctg tgtcccgagg
     7801 aagtgcaaag ctgagatggt tggtggagcg gggatacctg cagccctatg gaaaggtcat
     7861 tgatcttgga tgtggcagag ggggctggag ttactacgcc gccaccatcc gcaaagttca
     7921 agaagtgaaa ggatacacaa aaggaggccc tggtcatgaa gaacccgtgt tggtgcaaag
     7981 ctatgggtgg aacatagtcc gtctcaagag tggggtggac gtctttcata tggcggctga
     8041 gccgtgtgac acgttgctat gtgacatagg tgagtcatca tctagtcctg aagtggaaga
     8101 agcacggacg ctcagagtcc tctccatggt gggggattgg cttgaaaaaa gaccaggagc
     8161 cttttgtata aaagtgttgt gcccatacac cagcactatg atggaaaccc tggagcgact
     8221 gcagcgtagg tatgggggag gactggtcag agtgccactc tcccgcaact ctacacatga
     8281 gatgtactgg gtctctggag cgaaaagcaa caccataaaa agtgtgtcca ccacgagcca
     8341 gctcctcttg gggcgcatgg acgggcctag gaggccagtg aaatatgagg aggatgtgaa
     8401 tctcggctct ggcacgcggg ctgtggtaag ctgcgctgaa gctcccaaca tgaagatcat
     8461 tggtaaccgc attgaaagga tccgcagtga gcacgcggaa acgtggttct ttgacgagaa
     8521 ccacccatat aggacatggg cttaccatgg aagctatgag gcccccacac aagggtcagc
     8581 atcctctcta gtaaacgggg ttgtcaggct cctgtcaaaa ccctgggatg tggtgactgg
     8641 agtcacagga atagccatga ccgacaccac accgtatggt cagcaaagag ttttcaagga
     8701 aaaagtggac actagggtgc cagaccccca agaaggcact cgtcaggtta tgagcatggt
     8761 ctcttcctgg ttgtggaaag agctaggcaa acacaaacgg ccacgagtct gtaccaaaga
     8821 agagttcatc aacaaggttc gtagcaatgc agcattaggg gcaatatttg aagaggaaaa
     8881 agagtggaag actgcagtgg aagctgtgaa cgatccaagg ttctgggctc tagtggacaa
     8941 ggaaagagag caccacctga gaggagagtg ccagagttgt gtgtacaaca tgatgggaaa
     9001 aagagaaaag aaacaagggg aatttggaaa ggccaagggc agccgcgcca tctggtatat
     9061 gtggctaggg gctagatttc tagagttcga agcccttgga ttcttgaacg aggatcactg
     9121 gatggggaga gagaactcag gaggtggtgt tgaagggctg ggattacaaa gactcggata
     9181 tgtcctagaa gagatgagtc gcataccagg aggaaggatg tatgcagatg acactgctgg
     9241 ctgggatacc cgcatcagca ggtttgatct agagaatgaa gctctaatca ccaaccaaat
     9301 ggagaaaggg cacagggcct tggcattggc cataatcaag tacacatacc aaaacaaagt
     9361 ggtaaaggtc cttagaccag ctgaaaaagg gaaaacagtt atggacatta tttcgagaca
     9421 agaccaaagg gggagcggac aagttgtcac ttacgctctt aacacattta ccaacctagt
     9481 ggtgcaactc attcggaata tggaggctga ggaagttcta gagatgcaag acttgtggct
     9541 gctgcggagg tcagagaaag tgaccaactg gttgcagagc aacggatggg ataggctcaa
     9601 acgaatggca gtcagtggag atgattgcgt tgtgaagcca attgatgata ggtttgcaca
     9661 tgccctcagg ttcttgaatg atatgggaaa agttaggaag gacacacaag agtggaaacc
     9721 ctcaactgga tgggacaact gggaagaagt tccgttttgc tcccaccact tcaacaagct
     9781 ccatctcaag gatgggaggt ccattgtggt tccctgccgc caccaagatg aactgattgg
     9841 ccgggcccgc gtctctccag gggcgggatg gagcatccgg gagactgctt gcctagcaaa
     9901 atcatatgcg caaatgtggc agctccttta tttccacaga agggacctcc gactgatggc
     9961 caatgccatt tgttcatctg tgccagttga ctgggttcca actgggagaa ctacctggtc
    10021 aatccatgga aagggagaat ggatgaccat tgaagacatg cttgtggtgt ggaacagagt
    10081 gtggattgag gagaacgacc acatggaaga caagacccca gttacgaaat ggacagacat
    10141 tccctatttg ggaaaaaggg aagacttgtg gtgtggatct ctcatagggc acagaccgcg
    10201 caccacctgg gctgagaaca ttaaaaacac agtcaacatg gtgcgcagga tcataggtga
    10261 ggaagaaaag tacatggact acctatccac ccaagtccgc tacttgggtg aagaagggtc
    10321 tacacctgga gtgctgtaag caccaatctt aatgttgtca ggcctgctag tcagccacag
    10381 cttggggaaa gctgtgcagc ctgtgacccc cccaggagaa gctgggaaac caagcctata
    10441 gtcaggccga gaacgccatg gcacggaaga agccatgctg cctgtgagcc cctcagagga
    10501 cactgagtca aaaaacccca cgcgcttgga ggcgcaggat gggaaaagaa ggtggcgacc
    10561 ttccccaccc ttcaatctgg ggcctgaact ggagatca

[niman]

Sequences producing significant alignments:

Select:AllNone Selected:0

AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments

Sequences producing significant alignments:

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
Select seq gb|KY014325.1|	Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-030-URI polyprotein gene, complete cds	2305	2305	100%	0.0	100%	KY014325.1
Select seq gb|KY014323.1|	Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-02-MOS polyprotein gene, complete cds	2305	2305	100%	0.0	100%	KY014323.1
Select seq gb|KY014295.1|	Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-010-URI polyprotein gene, complete cds	2305	2305	100%	0.0	100%	KY014295.1
Select seq gb|KX922706.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds	2305	2305	100%	0.0	100%	KX922706.1
Select seq gb|KX922704.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds	2305	2305	100%	0.0	100%	KX922704.1
Select seq gb|KX922703.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds	2305	2305	100%	0.0	100%	KX922703.1
Select seq gb|KX842449.2|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds	2305	2305	100%	0.0	100%	KX842449.2
Select seq gb|KX838905.2|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds	2305	2305	100%	0.0	100%	KX838905.2
Select seq gb|KY014324.1|	Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-01-MOS polyprotein gene, complete cds	2300	2300	100%	0.0	99%	KY014324.1
Select seq gb|KX838904.2|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds	2300	2300	100%	0.0	99%	KX838904.2
Select seq gb|KX832731.1|	Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds	2300	2300	100%	0.0	99%	KX832731.1
Select seq gb|KY014322.1|	Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-03-MOS polyprotein gene, complete cds	2291	2291	100%	0.0	99%	KY014322.1
Select seq gb|KY014321.1|	Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0115-SER polyprotein gene, complete cds	2291	2291	100%	0.0	99%	KY014321.1
Select seq gb|KY014314.1|	Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0436-SER polyprotein gene, complete cds	2291	2291	100%	0.0	99%	KY014314.1
Select seq gb|KY014304.1|	Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0180-SER polyprotein gene, complete cds	2291	2291	100%	0.0	99%	KY014304.1
Select seq gb|KY014299.1|	Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-04-MOS polyprotein gene, complete cds	2291	2291	100%	0.0	99%	KY014299.1
Select seq gb|KY014298.1|	Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-032-URI polyprotein gene, complete cds	2291	2291	100%	0.0	99%	KY014298.1
Select seq dbj|LC190723.1|	Zika virus genomic RNA, complete genome, strain: ZIKV/Hu/Yokohama/1/2016	2291	2291	100%	0.0	99%	LC190723.1
Select seq gb|KX922708.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds	2291	2291	100%	0.0	99%	KX922708.1
Select seq gb|KX922707.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds	2291	2291	100%	0.0	99%	KX922707.1
Select seq gb|KX922705.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds	2291	2291	100%	0.0	99%	KX922705.1
Select seq gb|KX838906.2|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds	2291	2291	100%	0.0	99%	KX838906.2
Select seq gb|KU758869.1|	Zika virus isolate 05211 polyprotein gene, partial cds	2291	2291	100%	0.0	99%	KU758869.1
Select seq gb|KU758868.1|	Zika virus isolate 27229 polyprotein gene, partial cds	2291	2291	100%	0.0	99%	KU758868.1
Select seq gb|KU853013.1|	Zika virus isolate Dominican Republic/2016/PD2, complete genome	2291	2291	100%	0.0	99%	KU853013.1
Select seq gb|KU853012.1|	Zika virus isolate Dominican Republic/2016/PD1, complete genome	2291	2291	100%	0.0	99%	KU853012.1
Select seq gb|KY014300.1|	Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0208-SER polyprotein gene, complete cds	2287	2287	100%	0.0	99%	KY014300.1
Select seq gb|KY014297.1|	Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-6864-URI polyprotein gene, complete cds	2287	2287	100%	0.0	99%	KY014297.1
Select seq gb|KX197205.1|	Zika virus isolate 9, complete genome	2287	2287	100%	0.0	99%	KX197205.1
Select seq gb|KX694534.1|	Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome	2287	2287	100%	0.0	99%	KX694534.1
Select seq gb|KX673530.1|	Zika virus isolate PHE_semen_Guadeloupe, complete genome	2287	2287	100%	0.0	99%	KX673530.1
Select seq gb|KX447519.1|	Zika virus isolate 1_0199_PF polyprotein gene, partial cds	2287	2287	100%	0.0	99%	KX447519.1
Select seq gb|KX447513.1|	Zika virus isolate 1_0134_PF polyprotein gene, complete cds	2287	2287	100%	0.0	99%	KX447513.1
Select seq gb|KX447511.1|	Zika virus isolate 1_0015_PF polyprotein gene, complete cds	2287	2287	100%	0.0	99%	KX447511.1
Select seq gb|KU758877.1|	Zika virus isolate 17271 polyprotein gene, complete cds	2287	2287	100%	0.0	99%	KU758877.1
Select seq gb|KU758874.1|	Zika virus isolate 20114 polyprotein gene, partial cds	2287	2287	100%	0.0	99%	KU758874.1
Select seq gb|KU758871.1|	Zika virus isolate 17170 polyprotein gene, partial cds	2287	2287	100%	0.0	99%	KU758871.1
Select seq gb|KU758870.1|	Zika virus isolate 17160 polyprotein gene, partial cds	2287	2287	100%	0.0	99%	KU758870.1
Select seq gb|KX262887.1|	Zika virus isolate 103451, complete genome	2287	2287	100%	0.0	99%	KX262887.1
Select seq gb|KU937936.1|	Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds	2287	2287	100%	0.0	99%	KU937936.1
Select seq gb|KX051563.1|	Zika virus isolate Haiti/1/2016, complete genome	2287	2287	100%	0.0	99%	KX051563.1
Select seq gb|KU940228.1|	Zika virus isolate Bahia07, partial genome	2287	2287	100%	0.0	99%	KU940228.1
Select seq gb|KU312314.1|	Zika virus isolate Z1106031 polyprotein gene, partial cds	2287	2287	100%	0.0	99%	KU312314.1
Select seq gb|KY014316.1|	Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-039-URI polyprotein gene, complete cds	2286	2286	100%	0.0	99%	KY014316.1
Select seq gb|KY014327.1|	Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME167-PLA polyprotein gene, complete cds	2282	2282	100%	0.0	99%	KY014327.1
Select seq gb|KY014315.1|	Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME152-SER polyprotein gene, complete cds	2282	2282	100%	0.0	99%	KY014315.1
Select seq gb|KY014312.1|	Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME58-PLA polyprotein gene, complete cds	2282	2282	100%	0.0	99%	KY014312.1
Select seq gb|KY014306.1|	Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME178-PLA polyprotein gene, complete cds	2282	2282	100%	0.0	99%	KY014306.1
Select seq gb|KY014301.1|	Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ107D1-URI polyprotein gene, complete cds	2282	2282	100%	0.0	99%	KY014301.1
Select seq gb|KX879604.1|	Zika virus isolate SN089, complete genome	2282	2282	100%	0.0	99%	KX879604.1
Select seq gb|KX879603.1|	Zika virus isolate SN062, complete genome	2282	2282	100%	0.0	99%	KX879603.1
Select seq gb|KX856011.1|	Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome	2282	2282	100%	0.0	99%	KX856011.1
Select seq gb|KX447521.1|	Zika virus isolate 1_0080_PF polyprotein gene, partial cds	2282	2282	100%	0.0	99%	KX447521.1
Select seq gb|KX447520.1|	Zika virus isolate 1_0016_PF polyprotein gene, partial cds	2282	2282	100%	0.0	99%	KX447520.1
Select seq gb|KX447518.1|	Zika virus isolate 1_0117_PF polyprotein gene, partial cds	2282	2282	100%	0.0	99%	KX447518.1
Select seq gb|KX447512.1|	Zika virus isolate 1_0181_PF polyprotein gene, complete cds	2282	2282	100%	0.0	99%	KX447512.1
Select seq gb|KX447509.1|	Zika virus isolate 1_0087_PF polyprotein gene, complete cds	2282	2282	100%	0.0	99%	KX447509.1
Select seq gb|KX520666.1|	Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds	2282	2282	100%	0.0	99%	KX520666.1
Select seq gb|KU758876.1|	Zika virus isolate 21068 polyprotein gene, partial cds	2282	2282	100%	0.0	99%	KU758876.1
Select seq gb|KU758875.1|	Zika virus isolate 15042 polyprotein gene, partial cds	2282	2282	100%	0.0	99%	KU758875.1
Select seq gb|KU758873.1|	Zika virus isolate 18246 polyprotein gene, partial cds	2282	2282	100%	0.0	99%	KU758873.1
Select seq gb|KX247632.1|	Zika virus isolate MEX_I_7 polyprotein gene, complete cds	2282	2282	100%	0.0	99%	KX247632.1
Select seq gb|KU991811.1|	Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds	2282	2282	100%	0.0	99%	KU991811.1
Select seq gb|KU926309.1|	Zika virus isolate Rio-U1, complete genome	2282	2282	100%	0.0	99%	KU926309.1
Select seq gb|KU707826.1|	Zika virus isolate SSABR1, complete genome	2282	2282	100%	0.0	99%	KU707826.1
Select seq gb|KU527068.1|	Zika virus strain Natal RGN, complete genome	2282	2282	100%	0.0	99%	KU527068.1
Select seq gb|KU501217.1|	Zika virus strain 8375 polyprotein gene, complete cds	2282	2282	100%	0.0	99%	KU501217.1
Select seq gb|KU501216.1|	Zika virus strain 103344 polyprotein gene, complete cds	2282	2282	100%	0.0	99%	KU501216.1
Select seq gb|KU365779.1|	Zika virus strain BeH819966 polyprotein gene, complete cds	2282	2282	100%	0.0	99%	KU365779.1
Select seq gb|KU365778.1|	Zika virus strain BeH819015 polyprotein gene, complete cds	2282	2282	100%	0.0	99%	KU365778.1
Select seq gb|KY014310.1|	Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME42-SER polyprotein gene, complete cds	2280	2280	100%	0.0	99%	KY014310.1
Select seq gb|KY014317.1|	Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ28D1-URI polyprotein gene, complete cds	2278	2278	100%	0.0	99%	KY014317.1
Select seq gb|KJ776791.2|	Zika virus strain H/PF/2013, complete genome	2278	2278	100%	0.0	99%	KJ776791.2
Select seq gb|KX766028.1|	Zika virus isolate R114916, complete genome	2278	2278	100%	0.0	99%	KX766028.1
Select seq gb|KX447515.1|	Zika virus isolate 1_0030_PF polyprotein gene, complete cds	2278	2278	100%	0.0	99%	KX447515.1
Select seq gb|KX447514.1|	Zika virus isolate 1_0035_PF polyprotein gene, complete cds	2278	2278	100%	0.0	99%	KX447514.1
Select seq gb|KX447510.1|	Zika virus isolate 1_0049_PF polyprotein gene, complete cds	2278	2278	100%	0.0	99%	KX447510.1
Select seq gb|KX576684.1|	Zika virus vector pZIKV-ICD, complete sequence	2278	2278	100%	0.0	99%	KX576684.1
Select seq gb|KX369547.1|	Zika virus strain PF13/251013-18, complete genome	2278	2278	100%	0.0	99%	KX369547.1
Select seq gb|KX446951.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome	2278	2278	100%	0.0	99%	KX446951.1
Select seq gb|KU758872.1|	Zika virus isolate 01170 polyprotein gene, partial cds	2278	2278	100%	0.0	99%	KU758872.1
Select seq gb|KX280026.1|	Zika virus isolate Paraiba_01, complete genome	2278	2278	100%	0.0	99%	KX280026.1
Select seq gb|KX056898.1|	Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds	2278	2278	100%	0.0	99%	KX056898.1
Select seq gb|KU509998.3|	Zika virus strain Haiti/1225/2014, complete genome	2278	2278	100%	0.0	99%	KU509998.3
Select seq gb|KU955590.1|	Zika virus isolate Z16019 polyprotein gene, complete cds	2278	2278	100%	0.0	99%	KU955590.1
Select seq gb|KU926310.1|	Zika virus isolate Rio-S1, complete genome	2278	2278	100%	0.0	99%	KU926310.1
Select seq gb|KU729218.1|	Zika virus isolate BeH828305 polyprotein gene, complete cds	2278	2278	100%	0.0	99%	KU729218.1
Select seq gb|KU365780.1|	Zika virus strain BeH815744 polyprotein gene, complete cds	2278	2278	100%	0.0	99%	KU365780.1
Select seq gb|KU365777.1|	Zika virus strain BeH818995 polyprotein gene, complete cds	2278	2278	100%	0.0	99%	KU365777.1
Select seq gb|KU312312.1|	Zika virus isolate Z1106033 polyprotein gene, complete cds	2278	2278	100%	0.0	99%	KU312312.1
Select seq gb|KY014307.1|	Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ49D1-PLA polyprotein gene, complete cds	2277	2277	100%	0.0	99%	KY014307.1
Select seq gb|KX766029.1|	Zika virus isolate R116265, complete genome	2273	2273	100%	0.0	99%	KX766029.1
Select seq gb|KX447516.1|	Zika virus isolate 1_0111_PF polyprotein gene, complete cds	2273	2273	100%	0.0	99%	KX447516.1
Select seq gb|KX601168.1|	Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome	2273	2273	100%	0.0	99%	KX601168.1
Select seq gb|KX446950.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome	2273	2273	100%	0.0	99%	KX446950.1
Select seq gb|KX377337.1|	Zika virus strain PRVABC-59, complete genome	2273	2273	100%	0.0	99%	KX377337.1
Select seq gb|KX087101.2|	Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome	2273	2273	100%	0.0	99%	KX087101.2
Select seq gb|KU729217.2|	Zika virus isolate BeH823339 polyprotein gene, complete cds	2273	2273	100%	0.0	99%	KU729217.2
Select seq gb|KU497555.1|	Zika virus isolate Brazil-ZKV2015, complete genome	2273	2273	100%	0.0	99%	KU497555.1
Select seq gb|KY014309.1|	Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ47D1-PLA polyprotein gene, partial cds	2271	2271	100%	0.0	99%	KY014309.1

[niman]

Sequences producing significant alignments:

Select:AllNone Selected:0

AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments

Sequences producing significant alignments:

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
Select seq gb|KY014325.1|	Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-030-URI polyprotein gene, complete cds	15885	15885	100%	0.0	100%	KY014325.1
Select seq gb|KX922704.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds	15885	15885	100%	0.0	99%	KX922704.1
Select seq gb|KY014295.1|	Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-010-URI polyprotein gene, complete cds	15867	15867	100%	0.0	99%	KY014295.1
Select seq gb|KX842449.2|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds	15867	15867	100%	0.0	99%	KX842449.2
Select seq gb|KX832731.1|	Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds	15858	15858	100%	0.0	99%	KX832731.1
Select seq gb|KY014323.1|	Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-02-MOS polyprotein gene, complete cds	15852	15852	100%	0.0	99%	KY014323.1
Select seq gb|KX922703.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds	15852	15852	100%	0.0	99%	KX922703.1
Select seq gb|KX838905.2|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds	15852	15852	100%	0.0	99%	KX838905.2
Select seq gb|KX922706.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds	15851	15851	100%	0.0	99%	KX922706.1
Select seq gb|KX838904.2|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds	15847	15847	100%	0.0	99%	KX838904.2
Select seq gb|KY014324.1|	Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-01-MOS polyprotein gene, complete cds	15843	15843	100%	0.0	99%	KY014324.1
Select seq gb|KY014300.1|	Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0208-SER polyprotein gene, complete cds	15825	15825	100%	0.0	99%	KY014300.1
Select seq gb|KY014304.1|	Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0180-SER polyprotein gene, complete cds	15822	15822	100%	0.0	99%	KY014304.1
Select seq gb|KU853013.1|	Zika virus isolate Dominican Republic/2016/PD2, complete genome	15822	15822	100%	0.0	99%	KU853013.1
Select seq gb|KU853012.1|	Zika virus isolate Dominican Republic/2016/PD1, complete genome	15820	15820	100%	0.0	99%	KU853012.1
Select seq gb|KY014321.1|	Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0115-SER polyprotein gene, complete cds	15813	15813	100%	0.0	99%	KY014321.1
Select seq dbj|LC190723.1|	Zika virus genomic RNA, complete genome, strain: ZIKV/Hu/Yokohama/1/2016	15813	15813	100%	0.0	99%	LC190723.1
Select seq gb|KX673530.1|	Zika virus isolate PHE_semen_Guadeloupe, complete genome	15798	15798	100%	0.0	99%	KX673530.1
Select seq gb|KY014314.1|	Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0436-SER polyprotein gene, complete cds	15795	15795	100%	0.0	99%	KY014314.1
Select seq gb|KX922707.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds	15795	15795	100%	0.0	99%	KX922707.1
Select seq gb|KY014316.1|	Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-039-URI polyprotein gene, complete cds	15791	15791	100%	0.0	99%	KY014316.1
Select seq gb|KY014322.1|	Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-03-MOS polyprotein gene, complete cds	15789	15789	100%	0.0	99%	KY014322.1
Select seq gb|KX838906.2|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds	15789	15789	100%	0.0	99%	KX838906.2
Select seq gb|KX922705.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds	15778	15778	100%	0.0	99%	KX922705.1
Select seq gb|KX922708.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds	15771	15771	100%	0.0	99%	KX922708.1
Select seq gb|KY014299.1|	Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-04-MOS polyprotein gene, complete cds	15768	15768	100%	0.0	99%	KY014299.1
Select seq gb|KX447510.1|	Zika virus isolate 1_0049_PF polyprotein gene, complete cds	15741	15741	100%	0.0	99%	KX447510.1
Select seq gb|KX280026.1|	Zika virus isolate Paraiba_01, complete genome	15735	15735	100%	0.0	99%	KX280026.1
Select seq gb|KX369547.1|	Zika virus strain PF13/251013-18, complete genome	15732	15732	100%	0.0	99%	KX369547.1
Select seq gb|KU509998.3|	Zika virus strain Haiti/1225/2014, complete genome	15732	15732	100%	0.0	99%	KU509998.3
Select seq gb|KU729217.2|	Zika virus isolate BeH823339 polyprotein gene, complete cds	15732	15732	100%	0.0	99%	KU729217.2
Select seq gb|KX811222.1|	Zika virus isolate Brazil_2015_MG, complete genome	15726	15726	100%	0.0	99%	KX811222.1
Select seq gb|KJ776791.2|	Zika virus strain H/PF/2013, complete genome	15726	15726	100%	0.0	99%	KJ776791.2
Select seq gb|KX447512.1|	Zika virus isolate 1_0181_PF polyprotein gene, complete cds	15726	15726	100%	0.0	99%	KX447512.1
Select seq gb|KU321639.1|	Zika virus strain ZikaSPH2015, complete genome	15726	15726	100%	0.0	99%	KU321639.1
Select seq gb|KX447509.1|	Zika virus isolate 1_0087_PF polyprotein gene, complete cds	15723	15723	100%	0.0	99%	KX447509.1
Select seq gb|KU991811.1|	Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds	15723	15723	100%	0.0	99%	KU991811.1
Select seq gb|KX447515.1|	Zika virus isolate 1_0030_PF polyprotein gene, complete cds	15717	15717	100%	0.0	99%	KX447515.1
Select seq gb|KX198135.1|	Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome	15717	15717	100%	0.0	99%	KX198135.1
Select seq gb|KX447516.1|	Zika virus isolate 1_0111_PF polyprotein gene, complete cds	15714	15714	100%	0.0	99%	KX447516.1
Select seq gb|KX447514.1|	Zika virus isolate 1_0035_PF polyprotein gene, complete cds	15714	15714	100%	0.0	99%	KX447514.1
Select seq gb|KX447513.1|	Zika virus isolate 1_0134_PF polyprotein gene, complete cds	15714	15714	100%	0.0	99%	KX447513.1
Select seq gb|KX447511.1|	Zika virus isolate 1_0015_PF polyprotein gene, complete cds	15714	15714	100%	0.0	99%	KX447511.1
Select seq gb|KX197192.1|	Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome	15714	15714	100%	0.0	99%	KX197192.1
Select seq gb|KU707826.1|	Zika virus isolate SSABR1, complete genome	15714	15714	100%	0.0	99%	KU707826.1
Select seq gb|KU365779.1|	Zika virus strain BeH819966 polyprotein gene, complete cds	15714	15714	100%	0.0	99%	KU365779.1
Select seq gb|KX879604.1|	Zika virus isolate SN089, complete genome	15708	15708	100%	0.0	99%	KX879604.1
Select seq gb|KX197205.1|	Zika virus isolate 9, complete genome	15708	15708	100%	0.0	99%	KX197205.1
Select seq gb|KU729218.1|	Zika virus isolate BeH828305 polyprotein gene, complete cds	15708	15708	100%	0.0	99%	KU729218.1
Select seq gb|KU647676.1|	Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds	15708	15708	100%	0.0	99%	KU647676.1
Select seq gb|KY014303.1|	Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0127-SER polyprotein gene, complete cds	15705	15705	100%	0.0	99%	KY014303.1
Select seq gb|KX247646.1|	Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome	15705	15705	100%	0.0	99%	KX247646.1
Select seq gb|KX156776.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome	15705	15705	100%	0.0	99%	KX156776.1
Select seq gb|KX051563.1|	Zika virus isolate Haiti/1/2016, complete genome	15705	15705	100%	0.0	99%	KX051563.1
Select seq gb|KU926310.1|	Zika virus isolate Rio-S1, complete genome	15705	15705	100%	0.0	99%	KU926310.1
Select seq gb|KU527068.1|	Zika virus strain Natal RGN, complete genome	15705	15705	100%	0.0	99%	KU527068.1
Select seq gb|KU365780.1|	Zika virus strain BeH815744 polyprotein gene, complete cds	15705	15705	100%	0.0	99%	KU365780.1
Select seq gb|KY014320.1|	Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ42D1-URI polyprotein gene, complete cds	15699	15699	100%	0.0	99%	KY014320.1
Select seq gb|KX879603.1|	Zika virus isolate SN062, complete genome	15699	15699	100%	0.0	99%	KX879603.1
Select seq gb|KU820897.5|	Zika virus isolate FLR polyprotein gene, complete cds	15699	15699	100%	0.0	99%	KU820897.5
Select seq gb|KX447517.1|	Zika virus isolate 1_0038_PF polyprotein gene, complete cds	15699	15699	100%	0.0	99%	KX447517.1
Select seq gb|KX156775.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome	15699	15699	100%	0.0	99%	KX156775.1
Select seq gb|KX156774.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome	15699	15699	100%	0.0	99%	KX156774.1
Select seq gb|KX087102.1|	Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome	15699	15699	100%	0.0	99%	KX087102.1
Select seq gb|KU926309.1|	Zika virus isolate Rio-U1, complete genome	15699	15699	100%	0.0	99%	KU926309.1
Select seq gb|KU365777.1|	Zika virus strain BeH818995 polyprotein gene, complete cds	15699	15699	100%	0.0	99%	KU365777.1
Select seq gb|KY014296.1|	Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ131D1-URI polyprotein gene, complete cds	15696	15696	100%	0.0	99%	KY014296.1
Select seq gb|KX893855.1|	Zika virus strain Zika virus/Homo sapiens/VEN/UF-2/2016, complete genome	15696	15696	100%	0.0	99%	KX893855.1
Select seq gb|KX702400.1|	Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome	15696	15696	100%	0.0	99%	KX702400.1
Select seq gb|KX262887.1|	Zika virus isolate 103451, complete genome	15696	15696	100%	0.0	99%	KX262887.1
Select seq gb|KU497555.1|	Zika virus isolate Brazil-ZKV2015, complete genome	15692	15692	99%	0.0	99%	KU497555.1
Select seq gb|KU940228.1|	Zika virus isolate Bahia07, partial genome	15690	15690	100%	0.0	99%	KU940228.1
Select seq gb|KU922960.1|	Zika virus isolate MEX/InDRE/Sm/2016, complete genome	15690	15690	100%	0.0	99%	KU922960.1
Select seq gb|KU922923.1|	Zika virus isolate MEX/InDRE/Lm/2016, complete genome	15690	15690	100%	0.0	99%	KU922923.1
Select seq gb|KU501217.1|	Zika virus strain 8375 polyprotein gene, complete cds	15690	15690	100%	0.0	99%	KU501217.1
Select seq gb|KX694534.1|	Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome	15686	15686	100%	0.0	99%	KX694534.1
Select seq gb|KU758877.1|	Zika virus isolate 17271 polyprotein gene, complete cds	15686	15686	100%	0.0	99%	KU758877.1
Select seq gb|KU501216.1|	Zika virus strain 103344 polyprotein gene, complete cds	15686	15686	100%	0.0	99%	KU501216.1
Select seq gb|KU312312.1|	Zika virus isolate Z1106033 polyprotein gene, complete cds	15686	15686	100%	0.0	99%	KU312312.1
Select seq gb|KY014297.1|	Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-6864-URI polyprotein gene, complete cds	15681	15681	100%	0.0	99%	KY014297.1
Select seq gb|KX548902.1|	Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds	15681	15681	100%	0.0	99%	KX548902.1
Select seq gb|KU501215.1|	Zika virus strain PRVABC59, complete genome	15681	15681	100%	0.0	99%	KU501215.1
Select seq gb|KU940224.1|	Zika virus isolate Bahia09, partial genome	15679	15679	100%	0.0	99%	KU940224.1
Select seq gb|KX806557.2|	Zika virus isolate TS17-2016, complete genome	15677	15677	100%	0.0	99%	KX806557.2
Select seq gb|KX601168.1|	Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome	15677	15677	100%	0.0	99%	KX601168.1
Select seq gb|KX520666.1|	Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds	15677	15677	100%	0.0	99%	KX520666.1
Select seq gb|KX087101.2|	Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome	15677	15677	100%	0.0	99%	KX087101.2
Select seq gb|KU365778.1|	Zika virus strain BeH819015 polyprotein gene, complete cds	15677	15677	100%	0.0	99%	KU365778.1
Select seq gb|KY014327.1|	Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME167-PLA polyprotein gene, complete cds	15674	15674	100%	0.0	99%	KY014327.1
Select seq gb|KY014315.1|	Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME152-SER polyprotein gene, complete cds	15672	15672	100%	0.0	99%	KY014315.1
Select seq gb|KX377337.1|	Zika virus strain PRVABC-59, complete genome	15672	15672	100%	0.0	99%	KX377337.1
Select seq gb|KX247632.1|	Zika virus isolate MEX_I_7 polyprotein gene, complete cds	15672	15672	100%	0.0	99%	KX247632.1
Select seq gb|KU870645.1|	Zika virus isolate FB-GWUH-2016, complete genome	15672	15672	100%	0.0	99%	KU870645.1
Select seq gb|KX446951.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome	15668	15668	100%	0.0	99%	KX446951.1
Select seq gb|KX446950.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome	15668	15668	100%	0.0	99%	KX446950.1
Select seq gb|KX856011.1|	Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome	15663	15663	100%	0.0	99%	KX856011.1
Select seq gb|KU937936.1|	Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds	15663	15663	100%	0.0	99%	KU937936.1
Select seq gb|KU820898.1|	Zika virus isolate GZ01 polyprotein gene, complete cds	15663	15663	100%	0.0	99%	KU820898.1
Select seq gb|KX766029.1|	Zika virus isolate R116265, complete genome	15654	15654	100%	0.0	99%	KX766029.1
Select seq gb|KU740184.2|	Zika virus isolate GD01 polyprotein gene, complete cds	15654	15654	100%	0.0	99%	KU740184.2

[niman]

LOCUS       KY014326               10365 bp    RNA     linear   VRL 21-OCT-2016
DEFINITION  Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-038-URI
            polyprotein gene, complete cds.
ACCESSION   KY014326
VERSION     KY014326.1
DBLINK      BioProject: PRJNA344504
            BioSample: SAMN05844993
KEYWORDS    .
SOURCE      Zika virus
  ORGANISM  Zika virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Flaviviridae; Flavivirus.
REFERENCE   1  (bases 1 to 10365)
  AUTHORS   Baniecki,M.L., Barnes,K.G., Bosch,I., Cannons,A., Cone,M.,
            Freije,C.A., Gehrke,L., Gladden-Young,A.D., Gnirke,A., Hogan,K.,
            Isern,S., Kopp,E., Luo,C.Y., MacInnis,B., Matranga,C.B.,
            Metsky,H.C., Michael,S., Park,D.J., Qu,J., Sabeti,P.C., Tan,A.,
            Tomkins-Tinch,C.H., West,K.L., Winnicki,S., Wohl,S. and
            Yozwiak,N.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-OCT-2016) Viral Genomics, Infectious Disease Program
            (Infectious Disease Initiative), Broad Institute, 75 Ames St,
            Cambridge, MA 02142, USA
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: github.com/broadinstitute/viral-ngs v.
                                     v1.11.0-119-g0edb62f-dirty
            Assembly Name         :: USA_2016_FL-038_URI-1
            Sequencing Technology :: Illumina; Swift LC
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..10365
                     /organism="Zika virus"
                     /mol_type="genomic RNA"
                     /isolate="Zika virus/H.sapiens-wt/USA/2016/FL-038-URI"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:64320"
                     /country="USA: Dade County, FL"
                     /collection_date="05-Aug-2016"
                     /collected_by="Florida Department of Health, Florida, USA"
     5'UTR           <1..69
     CDS             70..10341
                     /note="contains structural and nonstructural proteins"
                     /codon_start=1
                     /product="polyprotein"
                     /protein_id="AOY08547.1"
                     /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI
                     RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK
                     RRGADTSVGIVGLLLTTAMAAEVTRRGXXXXXXXXXXXXXXXXXXXXXXXXNKCYIQI
                     MDLGHMCDXXXXXXXXXXXXXXXXXXXDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT
                     LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV
                     IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE
                     LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG
                     NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET
                     DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF
                     HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE
                     MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG
                     TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG
                     EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG
                     AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC
                     SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR
                     MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK
                     SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE
                     CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI
                     EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR
                     GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSVVTA
                     GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA
                     ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT
                     AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL
                     ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE
                     VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD
                     AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY
                     VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW
                     HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN
                     IQTLPGIFKTKDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
                     XXXXXHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV
                     PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT
                     KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR
                     RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK
                     VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM
                     EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL
                     PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV
                     LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP
                     QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA
                     SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL
                     LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV
                     VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP
                     NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ
                     MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK
                     VIDLGCGRGGWSYYAATIRKVQEVKGYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWLEKRPGAFCIKVLCPYTSTMM
                     ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP
                     VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG
                     SYEAPTQGSASSLVNGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD
                     PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV
                     EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA
                     RFLEFEALGFLNEDHWMGRENSGGGVEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR
                     DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTIEDMLVVWNRVWIEENDHMEDKT
                     PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGEEEKYMDYLST
                     QVRYLGEEGSTPGVL"
     gap             4939..5434
                     /estimated_length=496
     gap             7942..8139
                     /estimated_length=198
     gap             9160..9940
                     /estimated_length=781
     3'UTR           10342..>10365
ORIGIN      
        1 gtttgaagcg aaagctagca acagtatcaa caggttttat tttggatttg gaaacgagag
       61 tttctggtca tgaaaaaccc aaaaaagaaa tccggaggat tccggattgt caatatgcta
      121 aaacgcggag tagcccgtgt gagccccttt gggggcttga agaggctgcc agccggactt
      181 ctgctgggtc atgggcccat caggatggtc ttggcgattc tagccttttt gagattcacg
      241 gcaatcaagc catcactggg tctcatcaat agatggggtt cagtggggaa aaaagaggct
      301 atggaaataa taaagaagtt caagaaagat ctggctgcca tgctgagaat aatcaatgct
      361 aggaaggaga agaagagacg aggcgcagat actagtgtcg gaattgttgg cctcctgctg
      421 accacagcta tggcagcgga ggtcactaga cgtgggannn nnnnnnnnnn nnnnnnnnnn
      481 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnaa taagtgttat
      541 atacagatca tggatcttgg acacatgtgt gatnnnnnnn nnnnnnnnnn nnnnnnnnnn
      601 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnc gattgttggt gcaacacgac gtcaacttgg
      661 gttgtgtacg gaacctgcca tcacaaaaaa ggtgaagcac ggagatctag aagagctgtg
      721 acgctcccct cccattccac taggaagctg caaacgcggt cgcaaacctg gttggaatca
      781 agagaataca caaagcactt gattagagtc gaaaattgga tattcaggaa ccctggcttc
      841 gcgttagcag cagctgccat cgcttggctt ttgggaagct caacgagcca aaaagttata
      901 tacttggtca tgatactgct gattgccccg gcatacagca tcaggtgcat aggagtcagc
      961 aatagggact ttgtggaagg tatgtcaggt gggacttggg ttgatgttgt cttggaacat
     1021 ggaggctgtg tcaccgtaat ggcacaggac aaaccgactg tcgacataga gctggttaca
     1081 acaacagtca gcaacatggc ggaggtaaga tcctactgct atgaggcatc aatatcagac
     1141 atggcttcgg acagccgctg cccaacacaa ggtgaagcct accttgacaa gcaatcagac
     1201 actcaatatg tctgcaaaag aacgttagtg gacagaggct ggggaaatgg atgtggactt
     1261 tttggcaaag ggagcctggt gacatgcgct aagtttgcat gctccaagaa aatgaccggg
     1321 aagagcatcc agccagagaa tctggagtac cggataatgc tgtcagttca tggctcccag
     1381 cacagtggga tgatcgttaa tgacacagga catgaaactg atgagaatag agcgaaggtt
     1441 gagataacgc ccaattcacc aagagccgaa gccaccctgg ggggttttgg aagcctagga
     1501 ctggattgtg aaccgaggac aggccttgac ttttcagatt tgtattactt gactatgaat
     1561 aacaagcact ggttggttca caaggagtgg ttccacgaca ttccattacc ttggcacgct
     1621 ggggcagaca ccggaactcc acactggaac aacaaagaag cactggtaga gttcaaggac
     1681 gcacatgcca aaaggcaaac tgtcgtggtt ctagggagtc aagaaggagc agttcacacg
     1741 gcccttgctg gagctctgga ggctgagatg gatggtgcaa agggaaggct gtcctctggc
     1801 cacttgaaat gtcgcctgaa aatggataaa cttagattga agggcgtgtc atactccttg
     1861 tgtaccgcag cgttcacatt caccaagatc ccggctgaaa cactgcacgg gacagtcaca
     1921 gtggaggtac agtacgcagg gacagatgga ccttgcaagg ttccagctca gatggcggtg
     1981 gacatgcaaa ctctgacccc agttgggagg ttgataaccg ccaaccccgt aatcactgaa
     2041 agcactgaga actctaagat gatgctggaa cttgatccac catttgggga ctcttacatt
     2101 gtcataggag tcggggagaa gaagatcacc caccactggc acaggagtgg cagcaccatt
     2161 ggaaaagcat ttgaagccac tgtgagaggt gccaagagaa tggcagtctt gggagataca
     2221 gcctgggact ttggatcagt tggaggcgct ctcaactcat tgggcaaggg catccatcaa
     2281 atttttggag cagctttcaa atcattgttt ggaggaatgt cctggttctc acaaatcctc
     2341 attggaacgt tgctgatgtg gttgggtctg aacacaaaga atggatctat ttccctcatg
     2401 tgcttggcct tagggggagt gttgatcttc ttatccacag ccgtctctgc tgatgtgggg
     2461 tgctcggtgg acttctcaaa gaaggagacg agatgcggta caggggtgtt cgtctataac
     2521 gacgttgaag cctggaggga caggtacaag taccatcctg actccccccg tagattggca
     2581 gcagcagtca agcaagcctg ggaagatggt atctgcggga tctcctctgt ttcaagaatg
     2641 gaaaacatca tgtggagatc agtagaaggg gagctcaatg caatcctgga agagaatgga
     2701 gttcaactga cggtcgttgt gggatctgta aaaaacccca tgtggagagg tccacagaga
     2761 ttgcccgtgc ctgtgaacga gctgccccac ggctggaagg cttgggggaa atcgtacttc
     2821 gttagagcag caaagacaaa taacagcttt gtcgtggatg gtgacacact gaaggaatgc
     2881 ccactcaaac atagagcatg gaacagcttt cttgtggagg atcatgggtt cggggtattt
     2941 cacactagtg tctggctcaa ggttagagaa gattattcat tagagtgtga tccagccgtt
     3001 attggaacag ctgttaaggg aaaggaggct gtacacagtg atctaggcta ctggattgag
     3061 agtgagaaga atgacacatg gaggctgaag agggcccatc tgatcgagat gaaaacatgt
     3121 gaatggccaa agtcccacac attgtggaca gatggaatag aagagagtga tctgatcata
     3181 cccaagtctt tagctgggcc actcagccat cacaatacca gagagggcta caggacccaa
     3241 atgaaagggc catggcacag tgaagagctt gaaattcggt ttgaggaatg cccaggcact
     3301 aaggtccacg tggaggaaac atgtggaaca agaggaccat ctctgagatc aaccactgca
     3361 agcggaaggg tgatcgagga atggtgctgc agggagtgca caatgccccc actgtcgttc
     3421 cgggctaaag atggctgttg gtatggaatg gagataaggc ccaggaaaga accagaaagc
     3481 aacttagtaa ggtcagtggt gactgcagga tcaactgatc acatggatca cttctccctt
     3541 ggagtgcttg tgattctgct catggtgcag gaagggctga agaagagaat gaccacaaag
     3601 atcatcataa gcacatcaat ggcagtgctg gtagctatga tcctgggagg attttcaatg
     3661 agtgacctgg ctaagcttgc aattttgatg ggtgccacct tcgcggaaat gaacactgga
     3721 ggagatgtag ctcatctggc gctgatagcg gcattcaaag tcagaccagc gttgctggta
     3781 tctttcatct tcagagctaa ttggacaccc cgtgaaagca tgctgctggc cttggcctcg
     3841 tgtcttttgc aaactgcgat ctccgccttg gaaggcgacc tgatggttct catcaatggt
     3901 tttgctttgg cctggttggc aatacgagcg atggttgttc cacgcactga taacatcacc
     3961 ttggcaatcc tggctgctct gacaccactg gcccggggca cactgcttgt ggcgtggaga
     4021 gcaggccttg ctacttgcgg ggggtttatg ctcctctctc tgaagggaaa aggcagtgtg
     4081 aagaagaact taccatttgt catggccctg ggactaaccg ctgtgaggct ggtcgacccc
     4141 atcaacgtgg tgggactgct gttgctcaca aggagtggga agcggagctg gccccctagc
     4201 gaagtactca cagctgttgg cctgatatgc gcattggctg gagggttcgc caaggcagat
     4261 atagagatgg ctgggcccat ggccgcggtc ggtctgctaa ttgtcagtta cgtggtctca
     4321 ggaaagagtg tggacatgta cattgaaaga gcaggtgaca tcacatggga aaaagatgcg
     4381 gaagtcactg gaaacagtcc ccggctcgat gtggcgctag atgagagtgg tgatttctcc
     4441 ctggtggagg atgacggtcc ccccatgaga gagatcatac tcaaggtggt cctgatgacc
     4501 atctgtggca tgaacccaat agccataccc tttgcagctg gagcgtggta cgtatacgtg
     4561 aagactggaa aaaggagtgg tgctctatgg gatgtgcctg ctcccaagga agtaaaaaag
     4621 ggggagacca cagatggagt gtacagagta atgactcgta gactgctagg ttcaacacaa
     4681 gttggagtgg gagttatgca agagggggtc tttcacacta tgtggcacgt cacaaaagga
     4741 tccgcgctga gaagcggtga agggagactt gatccatact ggggagatgt caagcaggat
     4801 ctggtgtcat actgtggtcc atggaagcta gatgccgcct gggacgggca cagcgaggtg
     4861 cagctcttgg ccgtgccccc cggagagaga gcgaggaaca tccagactct gcccggaata
     4921 tttaagacaa aggatggg                                             
          [gap 496 bp]    Expand Ns
     5435                                      cccact tcacagatcc ctcaagtata
     5461 gcagcaagag gatacatttc aacaagggtt gagatgggcg aggcggctgc catcttcatg
     5521 accgccacgc caccaggaac ccgtgacgca tttccggact ccaactcacc aattatggac
     5581 accgaagtgg aagtcccaga gagagcctgg agctcaggct ttgattgggt gacggatcat
     5641 tctggaaaaa cagtttggtt tgttccaagc gtgaggaacg gcaatgagat cgcagcttgt
     5701 ctgacaaagg ctggaaaacg ggtcatacag ctcagcagaa agacttttga gacagagttc
     5761 cagaaaacaa aacatcaaga gtgggacttt gtcgtgacaa ccgacatttc agagatgggc
     5821 gccaacttta aagctgaccg tgtcatagat tccaggagat gcctaaagcc ggtcatactt
     5881 gatggcgaga gagtcattct ggctggaccc atgcctgtca cacatgccag cgctgcccag
     5941 aggagggggc gcataggcag gaatcccaac aaacctggag atgagtatct gtatggaggt
     6001 gggtgcgcag agactgacga agaccatgca cactggcttg aagcaagaat gctccttgac
     6061 aatatttacc tccaagatgg cctcatagcc tcgctctatc gacctgaggc cgacaaagta
     6121 gcagccattg agggagagtt caagcttagg acggagcaaa ggaagacctt tgtggaactc
     6181 atgaaaagag gagatcttcc tgtttggctg gcctatcagg ttgcatctgc cggaataact
     6241 tacacagata gaagatggtg ctttgatggc acgaccaaca acaccataat ggaagacagt
     6301 gtgccggcag aggtgtggac cagacacgga gagaaaagag tgctcaaacc gaggtggatg
     6361 gacgccagag tttgttcaga tcatgcggcc ctgaagtcat tcaaggagtt tgccgctggg
     6421 aaaagaggag cggcttttgg agtgatggaa gccctgggaa cactgccagg acacatgaca
     6481 gagagattcc aggaagccat tgacaacctc gctgtgctca tgcgggcaga gactggaagc
     6541 aggccttaca aagccgcggc ggcccaattg ccggagaccc tagagaccat tatgcttttg
     6601 gggttgctgg gaacagtctc gctgggaatc tttttcgtct tgatgaggaa caagggcata
     6661 gggaagatgg gctttggaat ggtgactctt ggggccagcg catggctcat gtggctctcg
     6721 gaaattgagc cagccagaat tgcatgtgtc ctcattgttg tgttcctatt gctggtggtg
     6781 ctcatacctg agccagaaaa gcaaagatct ccccaggaca accaaatggc aatcatcatc
     6841 atggtagcag taggtcttct aggcttgatc accgccaatg aactcggatg gttggagaga
     6901 acaaagagtg acctaagcca tctaatggga aggagagagg agggagcaac cataggattc
     6961 tcaatggaca ttgacctgcg gccagcctca gcttgggcca tctatgctgc cttgacaact
     7021 ttcattaccc cagccgtcca acatgcagtg accacttcat acaacaacta ctccttaatg
     7081 gcgatggcca cgcaagctgg agtgttgttt ggtatgggca aagggatgcc attctacgca
     7141 tgggactttg gagtcccgct gctaatgata ggttgctact cacaattaac acccctgacc
     7201 ctaatagtgg ccatcatttt gctcgtggcg cactacatgt acttgatccc agggctgcag
     7261 gcagcagctg cgcgtgctgc ccagaagaga acggcagctg gcatcatgaa gaaccctgtt
     7321 gtggatggaa tagtggtgac tgacattgac acaatgacaa ttgaccccca agtggagaaa
     7381 aagatgggac aggtgctact catagcagta gccgtctcca gcgccatact gtcgcggacc
     7441 gcctgggggt ggggggaggc tggggccctg atcacagccg caacttccac tttgtgggaa
     7501 ggctctccga acaagtactg gaactcctct acagccactt cactgtgtaa catttttagg
     7561 ggaagttact tggctggagc ttctctaatc tacacagtaa caagaaacgc tggcttggtc
     7621 aagagacgtg ggggtggaac aggagagacc ctgggagaga aatggaaggc ccgcttgaac
     7681 cagatgtcgg ccctggagtt ctactcctac aaaaagtcag gcatcaccga ggtgtgcaga
     7741 gaagaggccc gccgcgccct caaggacggt gtggcaacgg gaggccatgc tgtgtcccga
     7801 ggaagtgcaa agctgagatg gttggtggag cggggatacc tgcagcccta tggaaaggtc
     7861 attgatcttg gatgtggcag agggggctgg agttactacg ccgccaccat ccgcaaagtt
     7921 caagaagtga aaggatacac a                                         
          [gap 198 bp]    Expand Ns
     8140                                           t ggcttgaaaa aagaccagga
     8161 gccttttgta taaaagtgtt gtgcccatac accagcacta tgatggaaac cctggagcga
     8221 ctgcagcgta ggtatggggg aggactggtc agagtgccac tctcccgcaa ctctacacat
     8281 gagatgtact gggtctctgg agcgaaaagc aacaccataa aaagtgtgtc caccacgagc
     8341 cagctcctct tggggcgcat ggacgggcct aggaggccag tgaaatatga ggaggatgtg
     8401 aatctcggct ctggcacgcg ggctgtggta agctgcgctg aagctcccaa catgaagatc
     8461 attggtaacc gcattgaaag gatccgcagt gagcacgcgg aaacgtggtt ctttgacgag
     8521 aaccacccat ataggacatg ggcttaccat ggaagctatg aggcccccac acaagggtca
     8581 gcatcctctc tagtaaacgg ggttgtcagg ctcctgtcaa aaccctggga tgtggtgact
     8641 ggagtcacag gaatagccat gaccgacacc acaccgtatg gtcagcaaag agttttcaag
     8701 gaaaaagtgg acactagggt gccagacccc caagaaggca ctcgtcaggt tatgagcatg
     8761 gtctcttcct ggttgtggaa agagctaggc aaacacaaac ggccacgagt ctgtaccaaa
     8821 gaagagttca tcaacaaggt tcgtagcaat gcagcattag gggcaatatt tgaagaggaa
     8881 aaagagtgga agactgcagt ggaagctgtg aacgatccaa ggttctgggc tctagtggac
     8941 aaggaaagag agcaccacct gagaggagag tgccagagtt gtgtgtacaa catgatggga
     9001 aaaagagaaa agaaacaagg ggaatttgga aaggccaagg gcagccgcgc catctggtat
     9061 atgtggctag gggctagatt tctagagttc gaagcccttg gattcttgaa cgaggatcac
     9121 tggatgggga gagagaactc aggaggtggt gttgaaggg                      
          [gap 781 bp]    Expand Ns
     9941                                             gaagggacct ccgactgatg
     9961 gccaatgcca tttgttcatc tgtgccagtt gactgggttc caactgggag aactacctgg
    10021 tcaatccatg gaaagggaga atggatgacc attgaagaca tgcttgtggt gtggaacaga
    10081 gtgtggattg aggagaacga ccacatggaa gacaagaccc cagttacgaa atggacagac
    10141 attccctatt tgggaaaaag ggaagacttg tggtgtggat ctctcatagg gcacagaccg
    10201 cgcaccacct gggctgagaa cattaaaaac acagtcaaca tggtgcgcag gatcataggt
    10261 gaggaagaaa agtacatgga ctacctatcc acccaagtcc gctacttggg tgaagaaggg
    10321 tctacacctg gagtgctgta agcaccaatc ttaatgttgt caggc

[niman]

Sequences producing significant alignments:

Select:AllNone Selected:0

AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments

Sequences producing significant alignments:

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
Select seq gb|KY014326.1|	Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-038-URI polyprotein gene, complete cds	7772	8555	97%	0.0	100%	KY014326.1
Select seq gb|KY014323.1|	Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-02-MOS polyprotein gene, complete cds	7772	8555	97%	0.0	100%	KY014323.1
Select seq gb|KY014295.1|	Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-010-URI polyprotein gene, complete cds	7772	8555	97%	0.0	100%	KY014295.1
Select seq gb|KX922704.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds	7772	8555	97%	0.0	100%	KX922704.1
Select seq gb|KX842449.2|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds	7772	8555	97%	0.0	100%	KX842449.2
Select seq gb|KX838905.2|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds	7772	8555	97%	0.0	100%	KX838905.2
Select seq gb|KX922706.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds	7768	8551	97%	0.0	99%	KX922706.1
Select seq gb|KX922703.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds	7766	8550	97%	0.0	99%	KX922703.1
Select seq gb|KX832731.1|	Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds	7766	8550	97%	0.0	99%	KX832731.1
Select seq gb|KX838904.2|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds	7764	8548	97%	0.0	99%	KX838904.2
Select seq gb|KY014324.1|	Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-01-MOS polyprotein gene, complete cds	7762	8546	97%	0.0	99%	KY014324.1
Select seq gb|KY014304.1|	Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0180-SER polyprotein gene, complete cds	7744	8528	97%	0.0	99%	KY014304.1
Select seq gb|KU853013.1|	Zika virus isolate Dominican Republic/2016/PD2, complete genome	7744	8528	97%	0.0	99%	KU853013.1
Select seq gb|KU853012.1|	Zika virus isolate Dominican Republic/2016/PD1, complete genome	7741	8524	97%	0.0	99%	KU853012.1
Select seq gb|KY014300.1|	Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0208-SER polyprotein gene, complete cds	7739	8522	97%	0.0	99%	KY014300.1
Select seq gb|KY014321.1|	Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0115-SER polyprotein gene, complete cds	7735	8519	97%	0.0	99%	KY014321.1
Select seq dbj|LC190723.1|	Zika virus genomic RNA, complete genome, strain: ZIKV/Hu/Yokohama/1/2016	7735	8519	97%	0.0	99%	LC190723.1
Select seq gb|KX922707.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds	7735	8519	97%	0.0	99%	KX922707.1
Select seq gb|KX922705.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds	7735	8519	97%	0.0	99%	KX922705.1
Select seq gb|KY014322.1|	Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-03-MOS polyprotein gene, complete cds	7730	8513	97%	0.0	99%	KY014322.1
Select seq gb|KY014316.1|	Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-039-URI polyprotein gene, complete cds	7730	8513	97%	0.0	99%	KY014316.1
Select seq gb|KY014298.1|	Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-032-URI polyprotein gene, complete cds	7730	8513	97%	0.0	99%	KY014298.1
Select seq gb|KX838906.2|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds	7730	8513	97%	0.0	99%	KX838906.2
Select seq gb|KX673530.1|	Zika virus isolate PHE_semen_Guadeloupe, complete genome	7730	8513	97%	0.0	99%	KX673530.1
Select seq gb|KY014299.1|	Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-04-MOS polyprotein gene, complete cds	7726	8510	97%	0.0	99%	KY014299.1
Select seq gb|KX922708.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds	7726	8510	97%	0.0	99%	KX922708.1
Select seq gb|KY014314.1|	Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0436-SER polyprotein gene, complete cds	7721	8504	97%	0.0	99%	KY014314.1
Select seq gb|KX447510.1|	Zika virus isolate 1_0049_PF polyprotein gene, complete cds	7721	8495	97%	0.0	99%	KX447510.1
Select seq gb|KX447518.1|	Zika virus isolate 1_0117_PF polyprotein gene, partial cds	7717	8501	97%	0.0	99%	KX447518.1
Select seq gb|KX280026.1|	Zika virus isolate Paraiba_01, complete genome	7717	8501	97%	0.0	99%	KX280026.1
Select seq gb|KU729218.1|	Zika virus isolate BeH828305 polyprotein gene, complete cds	7717	8495	97%	0.0	99%	KU729218.1
Select seq gb|KX879604.1|	Zika virus isolate SN089, complete genome	7712	8495	97%	0.0	99%	KX879604.1
Select seq gb|KU509998.3|	Zika virus strain Haiti/1225/2014, complete genome	7712	8490	97%	0.0	99%	KU509998.3
Select seq gb|KU926310.1|	Zika virus isolate Rio-S1, complete genome	7712	8490	97%	0.0	99%	KU926310.1
Select seq gb|KX879603.1|	Zika virus isolate SN062, complete genome	7708	8492	97%	0.0	99%	KX879603.1
Select seq gb|KX447513.1|	Zika virus isolate 1_0134_PF polyprotein gene, complete cds	7708	8492	97%	0.0	99%	KX447513.1
Select seq gb|KU321639.1|	Zika virus strain ZikaSPH2015, complete genome	7708	8483	97%	0.0	99%	KU321639.1
Select seq gb|KX811222.1|	Zika virus isolate Brazil_2015_MG, complete genome	7703	8486	97%	0.0	99%	KX811222.1
Select seq gb|KX197205.1|	Zika virus isolate 9, complete genome	7703	8486	97%	0.0	99%	KX197205.1
Select seq gb|KJ776791.2|	Zika virus strain H/PF/2013, complete genome	7703	8486	97%	0.0	99%	KJ776791.2
Select seq gb|KX447521.1|	Zika virus isolate 1_0080_PF polyprotein gene, partial cds	7703	8486	97%	0.0	99%	KX447521.1
Select seq gb|KX447515.1|	Zika virus isolate 1_0030_PF polyprotein gene, complete cds	7703	8481	97%	0.0	99%	KX447515.1
Select seq gb|KX447512.1|	Zika virus isolate 1_0181_PF polyprotein gene, complete cds	7703	8486	97%	0.0	99%	KX447512.1
Select seq gb|KX447509.1|	Zika virus isolate 1_0087_PF polyprotein gene, complete cds	7703	8486	97%	0.0	99%	KX447509.1
Select seq gb|KX369547.1|	Zika virus strain PF13/251013-18, complete genome	7703	8486	97%	0.0	99%	KX369547.1
Select seq gb|KX262887.1|	Zika virus isolate 103451, complete genome	7703	8486	97%	0.0	99%	KX262887.1
Select seq gb|KX197192.1|	Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome	7703	8477	97%	0.0	99%	KX197192.1
Select seq gb|KU940228.1|	Zika virus isolate Bahia07, partial genome	7703	8486	97%	0.0	99%	KU940228.1
Select seq gb|KU729217.2|	Zika virus isolate BeH823339 polyprotein gene, complete cds	7703	8486	97%	0.0	99%	KU729217.2
Select seq gb|KU707826.1|	Zika virus isolate SSABR1, complete genome	7703	8486	97%	0.0	99%	KU707826.1
Select seq gb|KU365779.1|	Zika virus strain BeH819966 polyprotein gene, complete cds	7703	8486	97%	0.0	99%	KU365779.1
Select seq gb|KU365780.1|	Zika virus strain BeH815744 polyprotein gene, complete cds	7699	8483	97%	0.0	99%	KU365780.1
Select seq gb|KU365777.1|	Zika virus strain BeH818995 polyprotein gene, complete cds	7699	8483	97%	0.0	99%	KU365777.1
Select seq gb|KY014309.1|	Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ47D1-PLA polyprotein gene, partial cds	7698	8476	97%	0.0	99%	KY014309.1
Select seq gb|KX447520.1|	Zika virus isolate 1_0016_PF polyprotein gene, partial cds	7694	8472	97%	0.0	99%	KX447520.1
Select seq gb|KX447514.1|	Zika virus isolate 1_0035_PF polyprotein gene, complete cds	7694	8477	97%	0.0	99%	KX447514.1
Select seq gb|KX447511.1|	Zika virus isolate 1_0015_PF polyprotein gene, complete cds	7694	8477	97%	0.0	99%	KX447511.1
Select seq gb|KX051563.1|	Zika virus isolate Haiti/1/2016, complete genome	7694	8477	97%	0.0	99%	KX051563.1
Select seq gb|KU501217.1|	Zika virus strain 8375 polyprotein gene, complete cds	7694	8477	97%	0.0	99%	KU501217.1
Select seq gb|KU501216.1|	Zika virus strain 103344 polyprotein gene, complete cds	7694	8477	97%	0.0	99%	KU501216.1
Select seq gb|KU365778.1|	Zika virus strain BeH819015 polyprotein gene, complete cds	7694	8472	97%	0.0	99%	KU365778.1
Select seq gb|KY014297.1|	Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-6864-URI polyprotein gene, complete cds	7692	8476	97%	0.0	99%	KY014297.1
Select seq gb|KU940224.1|	Zika virus isolate Bahia09, partial genome	7692	8393	96%	0.0	99%	KU940224.1
Select seq gb|KY014317.1|	Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ28D1-URI polyprotein gene, complete cds	7690	8474	97%	0.0	99%	KY014317.1
Select seq gb|KX806557.2|	Zika virus isolate TS17-2016, complete genome	7690	8468	97%	0.0	99%	KX806557.2
Select seq gb|KX694534.1|	Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome	7690	8474	97%	0.0	99%	KX694534.1
Select seq gb|KX447516.1|	Zika virus isolate 1_0111_PF polyprotein gene, complete cds	7690	8474	97%	0.0	99%	KX447516.1
Select seq gb|KX247632.1|	Zika virus isolate MEX_I_7 polyprotein gene, complete cds	7690	8474	97%	0.0	99%	KX247632.1
Select seq gb|KU991811.1|	Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds	7690	8474	97%	0.0	99%	KU991811.1
Select seq gb|KU527068.1|	Zika virus strain Natal RGN, complete genome	7690	8468	97%	0.0	99%	KU527068.1
Select seq gb|KY014307.1|	Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ49D1-PLA polyprotein gene, complete cds	7689	8468	97%	0.0	99%	KY014307.1
Select seq gb|KY014315.1|	Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME152-SER polyprotein gene, complete cds	7687	8465	97%	0.0	99%	KY014315.1
Select seq gb|KY014306.1|	Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME178-PLA polyprotein gene, complete cds	7687	8470	97%	0.0	99%	KY014306.1
Select seq gb|KY014327.1|	Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME167-PLA polyprotein gene, complete cds	7685	8468	97%	0.0	99%	KY014327.1
Select seq gb|KX520666.1|	Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds	7685	8468	97%	0.0	99%	KX520666.1
Select seq gb|KU758877.1|	Zika virus isolate 17271 polyprotein gene, complete cds	7685	8468	97%	0.0	99%	KU758877.1
Select seq gb|KU926309.1|	Zika virus isolate Rio-U1, complete genome	7685	8468	97%	0.0	99%	KU926309.1
Select seq gb|KU497555.1|	Zika virus isolate Brazil-ZKV2015, complete genome	7685	8459	97%	0.0	99%	KU497555.1
Select seq gb|KU501215.1|	Zika virus strain PRVABC59, complete genome	7685	8463	97%	0.0	99%	KU501215.1
Select seq gb|KY014319.1|	Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME38-PLA polyprotein gene, complete cds	7681	8306	97%	0.0	99%	KY014319.1
Select seq gb|KX856011.1|	Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome	7681	8465	97%	0.0	99%	KX856011.1
Select seq gb|KX601168.1|	Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome	7681	8459	97%	0.0	99%	KX601168.1
Select seq gb|KX446951.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome	7681	8465	97%	0.0	99%	KX446951.1
Select seq gb|KX377337.1|	Zika virus strain PRVABC-59, complete genome	7681	8459	97%	0.0	99%	KX377337.1
Select seq gb|KX087101.2|	Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome	7681	8459	97%	0.0	99%	KX087101.2
Select seq gb|KX198135.1|	Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome	7681	8456	97%	0.0	99%	KX198135.1
Select seq gb|KU870645.1|	Zika virus isolate FB-GWUH-2016, complete genome	7681	8459	97%	0.0	99%	KU870645.1
Select seq gb|KU312312.1|	Zika virus isolate Z1106033 polyprotein gene, complete cds	7681	8459	97%	0.0	99%	KU312312.1
Select seq gb|KY014310.1|	Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME42-SER polyprotein gene, complete cds	7678	8461	97%	0.0	99%	KY014310.1
Select seq gb|KY014303.1|	Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0127-SER polyprotein gene, complete cds	7676	8454	97%	0.0	99%	KY014303.1
Select seq gb|KX447517.1|	Zika virus isolate 1_0038_PF polyprotein gene, complete cds	7676	8449	97%	0.0	99%	KX447517.1
Select seq gb|KX446950.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome	7676	8459	97%	0.0	99%	KX446950.1
Select seq gb|KU937936.1|	Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds	7676	8459	97%	0.0	99%	KU937936.1
Select seq gb|KU955590.1|	Zika virus isolate Z16019 polyprotein gene, complete cds	7676	8459	97%	0.0	99%	KU955590.1
Select seq gb|KX766029.1|	Zika virus isolate R116265, complete genome	7672	8456	97%	0.0	99%	KX766029.1
Select seq gb|KX117076.1|	Zika virus isolate Zhejiang04, complete genome	7672	8447	97%	0.0	99%	KX117076.1
Select seq gb|KX056898.1|	Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds	7672	8456	97%	0.0	99%	KX056898.1
Select seq gb|KY014320.1|	Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ42D1-URI polyprotein gene, complete cds	7667	8411	97%	0.0	99%	KY014320.1
Select seq gb|KY014296.1|	Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ131D1-URI polyprotein gene, complete cds	7667	8450	97%	0.0	99%	KY014296.1
Select seq gb|KX253996.1|	Zika virus isolate ZKC2/2016, complete genome	7667	8441	97%	0.0	99%	KX253996.1