niman Posted October 22, 2016 Report Share Posted October 22, 2016 (edited) Full Florida Zika sequences have been released by The Broad Institute. Edited October 22, 2016 by niman Link to comment Share on other sites More sharing options...
niman Posted October 22, 2016 Author Report Share Posted October 22, 2016 Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-010-URI polyprotein gene, complete cds 10,619 bp linear RNA Accession: KY014295.1 GI: 1087986118 GenBankFASTAGraphics Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-032-URI polyprotein gene, complete cds 10,364 bp linear RNA Accession: KY014298.1 GI: 1087986126 GenBankFASTAGraphics Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-039-URI polyprotein gene, complete cds 10,600 bp linear RNA Accession: KY014316.1 GI: 1087986181 GenBankFASTAGraphics Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-030-URI polyprotein gene, complete cds 10,598 bp linear RNA Accession: KY014325.1 GI: 1087986202 GenBankFASTAGraphics Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-038-URI polyprotein gene, complete cds 10,365 bp linear RNA Accession: KY014326.1 GI: 1087986204 GenBankFASTAGraphics Link to comment Share on other sites More sharing options...
niman Posted October 24, 2016 Author Report Share Posted October 24, 2016 Pinellas LOCUS KY014316 10600 bp RNA linear VRL 21-OCT-2016 DEFINITION Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-039-URI polyprotein gene, complete cds. ACCESSION KY014316 VERSION KY014316.1 DBLINK BioProject: PRJNA344504 BioSample: SAMN05844994 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10600) AUTHORS Baniecki,M.L., Barnes,K.G., Bosch,I., Cannons,A., Cone,M., Freije,C.A., Gehrke,L., Gladden-Young,A.D., Gnirke,A., Hogan,K., Isern,S., Kopp,E., Luo,C.Y., MacInnis,B., Matranga,C.B., Metsky,H.C., Michael,S., Park,D.J., Qu,J., Sabeti,P.C., Tan,A., Tomkins-Tinch,C.H., West,K.L., Winnicki,S., Wohl,S. and Yozwiak,N.L. TITLE Direct Submission JOURNAL Submitted (20-OCT-2016) Viral Genomics, Infectious Disease Program (Infectious Disease Initiative), Broad Institute, 75 Ames St, Cambridge, MA 02142, USA COMMENT ##Assembly-Data-START## Assembly Method :: github.com/broadinstitute/viral-ngs v. v1.11.0-119-g0edb62f-dirty Assembly Name :: USA_2016_FL-039_URI-1 Sequencing Technology :: Illumina; Swift LC ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10600 /organism="Zika virus" /mol_type="genomic RNA" /isolate="Zika virus/H.sapiens-wt/USA/2016/FL-039-URI" /isolation_source="urine" /host="Homo sapiens" /db_xref="taxon:64320" /country="USA: Florida" /collection_date="17-Aug-2016" /collected_by="Florida Department of Health, Florida, USA" 5'UTR <1..68 CDS 69..10340 /note="contains structural and nonstructural proteins" /codon_start=1 /product="polyprotein" /protein_id="AOY08537.1" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREXTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSVVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLVNGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGEEEKYMDYLST QVRYLGEEGSTPGVL" 3'UTR 10341..>10600 ORIGIN 1 tttgaagcga aagctagcaa cagtatcaac aggttttatt ttggatttgg aaacgagagt 61 ttctggtcat gaaaaaccca aaaaagaaat ccggaggatt ccggattgtc aatatgctaa 121 aacgcggagt agcccgtgtg agcccctttg ggggcttgaa gaggctgcca gccggacttc 181 tgctgggtca tgggcccatc aggatggtct tggcgattct agcctttttg agattcacgg 241 caatcaagcc atcactgggt ctcatcaata gatggggttc agtggggaaa aaagaggcta 301 tggaaataat aaagaagttc aagaaagatc tggctgccat gctgagaata atcaatgcta 361 ggaaggagaa gaagagacga ggcgcagata ctagtgtcgg aattgttggc ctcctgctga 421 ccacagctat ggcagcggag gtcactagac gtgggagtgc atactacatg tacttggaca 481 gaaacgatgc tggggaggcc atatcttttc caaccacatt ggggatgaat aagtgttata 541 tacagatcat ggatcttgga cacatgtgtg atgccaccat gagctatgaa tgccctatgc 601 tggatgaggg ggtggaacca gatgacgtcg attgttggtg caacacgacg tcaacttggg 661 ttgtgtacgg aacctgccat cacaaaaaag gtgaagcacg gagatctaga agagctgtga 721 cgctcccctc ccattccact aggaagctgc aaacgcggtc gcaaacctgg ttggaatcaa 781 gagaayacac aaagcacttg attagagtcg aaaattggat attcaggaac cctggcttcg 841 cgttagcagc agctgccatc gcttggcttt tgggaagctc aacgagccaa aaagtcatat 901 acttggtcat gatactgctg attgccccgg catacagcat caggtgcata ggagtcagca 961 atagggactt tgtggaaggt atgtcaggtg ggacttgggt tgatgttgtc ttggaacatg 1021 gaggttgtgt caccgtaatg gcacaggaca aaccgactgt cgacatagag ctggttacaa 1081 caacagtcag caacatggcg gaggtaagat cctactgcta tgaggcatca atatcagaca 1141 tggcttcgga cagccgctgc ccaacacaag gtgaagccta ccttgacaag caatcagaca 1201 ctcaatatgt ctgyaaaaga acgttagtgg acagaggctg gggaaatgga tgtggacttt 1261 ttggcaaagg gagcctggtg acatgcgcta agtttgcatg ctccaagaaa atgaccggga 1321 agagcatcca gccagagaat ctggagtacc ggataatgct gtcagttcat ggctcccagc 1381 acagtgggat gatcgttaat gacacaggac atgaaactga tgagaataga gcgaaggttg 1441 agataacgcc caattcacca agagccgaag ccaccctggg gggttttgga agcctaggac 1501 ttgattgtga accgaggaca ggccttgact tttcagattt gtattacttg actatgaata 1561 acaagcactg gttggttcac aaggagtggt tccacgacat tccattacct tggcacgctg 1621 gggcagacac cggaactcca cactggaaca acaaagaagc actggtagag ttcaaggacg 1681 cacatgccaa aaggcaaact gtcgtggttc tagggagtca agaaggagca gttcacacgg 1741 cccttgctgg agctctggag gctgagatgg atggtgcaaa gggaaggctg tcctctggcc 1801 acttgaaatg tcgcctgaaa atggataaac ttagattgaa gggcgtgtca tactccttgt 1861 gtaccgcagc gttcacattc accaagatcc cggctgaaac actgcacggg acagtcacag 1921 tggaggtaca gtacgcaggg acagatggac cttgcaaggt tccagctcag atggcggtgg 1981 acatgcaaac tctgacccca gttgggaggt tgataaccgc caaccccgta atcactgaaa 2041 gcactgagaa ctctaagatg atgctggaac ttgatccacc atttggggac tcttacattg 2101 tcataggagt cggggagaag aagatcaccc accactggca caggagtggc agcaccattg 2161 gaaaagcatt tgaagccact gtgagaggtg ccaagagaat ggcagtcttg ggagacacag 2221 cctgggactt tggatcagtt ggaggcgctc tcaactcatt gggcaagggc atccatcaaa 2281 tttttggagc agctttcaaa tcattgtttg gaggaatgtc ctggttctca caaatcctca 2341 ttggaacgtt gctgatgtgg ttgggtctga acacaaagaa tggatctatt tccctcatgt 2401 gcttggcctt agggggagtg ttgatcttct tatccacagc cgtctctgct gatgtggggt 2461 gctcggtgga cttctcaaag aaggagacga gatgcggtac aggggtgttc gtctataacg 2521 acgttgaagc ctggagggac aggtacaagt accatcctga ctccccccgt agattggcag 2581 cagcagtcaa gcaagcctgg gaagatggta tctgcgggat ctcctctgtt tcaagaatgg 2641 aaaacatcat gtggagatca gtagaagggg agctcaatgc aatcctggaa gagaatggag 2701 ttcaactgac ggtcgttgtg ggatctgtaa aaaaccccat gtggagaggt ccacagagat 2761 tgcccgtgcc tgtgaacgag ctgccccacg gctggaaggc ttgggggaaa tcgtacttcg 2821 ttagagcagc aaagacaaat aacagctttg tcgtggatgg tgacacactg aaggaatgcc 2881 cactcaaaca tagagcatgg aacagctttc ttgtggagga tcatgggttc ggggtatttc 2941 acactagtgt ctggctcaag gttagagaag attattcatt agagtgtgat ccagccgtta 3001 ttggaacagc tgttaaggga aaggaggctg tacacagtga tctaggctac tggattgaga 3061 gtgagaagaa tgacacatgg aggctgaaga gggcccatct gatcgagatg aaaacatgtg 3121 aatggccaaa gtcccacaca ttgtggacag atggaataga agagagtgat ctgatcatac 3181 ccaagtcttt agctgggcca ctcagccacc acaataccag agagggctat aggacccaaa 3241 tgaaagggcc atggcacagt gaagagcttg aaattcggtt tgaggaatgc ccaggcacta 3301 aggtccacgt ggaggaaaca tgtggaacaa gaggaccatc tctgagatca accactgcaa 3361 gcggaagggt gatcgaggaa tggtgctgca gggagtgcac aatgccccca ctgtcgttcc 3421 gggctaaaga tggctgttgg tatggaatgg agataaggcc caggaaagaa ccagaaagca 3481 acttagtaag gtcagtggtg actgcaggat caactgatca catggatcac ttctcccttg 3541 gagtgcttgt gattctgctc atggtgcagg aagggctgaa gaagagaatg accacaaaga 3601 tcatcataag cacatcaatg gcagtgctgg tagctatgat cctgggagga ttttcaatga 3661 gtgacctggc taagcttgca attttgatgg gtgccacctt cgcggaaatg aacactggag 3721 gagatgtagc tcatctggcg ctgatagcgg cattcaaagt cagaccagcg ttgctggtat 3781 ctttcatctt cagagctaat tggacacccc gtgaaagcat gctgctggcc ttggcctcgt 3841 gtcttttgca aactgcgatc tccgccttgg aaggcgacct gatggttctc atcaatggtt 3901 ttgctttggc ctggttggca atacgagcga tggttgttcc acgcactgat aacatcacct 3961 tggcaatcct ggctgctctg acaccactgg cccggggcac actgcttgtg gcgtggagag 4021 caggccttgc tacttgcggg gggtttatgc tcctctctct gaagggaaaa ggcagtgtga 4081 agaagaactt accatttgtc atggccctgg gactaaccgc tgtgaggctg gtcgacccca 4141 tcaacgtggt gggactgctg ttgctcacaa ggagtgggaa gcggagctgg ccccctagcg 4201 aagtactcac agctgttggc ctgatatgcg cattggctgg agggttcgcc aaggcagata 4261 tagagatggc tgggcccatg gccgcagtcg gtctgctaat tgtcagttac gtggtctcag 4321 gaaagagtgt ggacatgtac attgaaagag caggtgacat cacatgggaa aaagatgcgg 4381 aagtcactgg aaacagtccc cggctcgatg tggcgctaga tgagagtggt gatttctccc 4441 tggtagagga tgacggtccc cccatgagag agatcatact caaggtggtc ctgatgacca 4501 tctgtggcat gaacccaata gccataccct ttgcagctgg agcgtggtac gtatacgtga 4561 agactggaaa aaggagtggt gctctatggg atgtgcctgc tcccaaggaa gtaaaaaagg 4621 gggagaccac agatggagtg tacagagtaa tgactcgtag actgctaggt tcaacacaag 4681 ttggagtggg agttatgcaa gagggggtct ttcacactat gtggcacgtc acaaaaggat 4741 ccgcgctgag aagcggtgaa gggagacttg atccatactg gggagatgtc aagcaggatc 4801 tggtgtcata ctgtggtcca tggaagctag atgccgcctg ggacgggcac agcgaggtgc 4861 agctcttggc cgtgcccccc ggagagagag cgaggaacat ccagactctg cccggaatat 4921 ttaagacaaa ggatggggac attggagcgg ttgcgctgga ttacccagca ggaacttcag 4981 gatctccaat cctagacaag tgtgggagag tgataggact ttatggcaat ggggtcgtga 5041 tcaaaaatgg gagttatgtt agtgccatca cccaagggag gagggaggaa gagactcctg 5101 ttgagtgctt cgagccttcg atgctgaaga agaagcagct aactgtctta gacttgcatc 5161 ctggagctgg gaaaaccagg agagttcttc ctgaaatagt ccgtgaagct ataaaaacaa 5221 gactccgtac tgtgatctta gctccaacca gggttgtcgc tgctgaaatg gaggaagccc 5281 ttagagggct tccagtgcgt tatatgacaa cagcagtcaa tgtcacccat tctggaacag 5341 aaatcgtcga cttaatgtgc catgccacct tcacttcacg tctactacag ccaatcagag 5401 tccccaacta taatctgtat attatggatg aggcccactt cacagatccc tcaagtatag 5461 cagcaagagg atacatttca acaagggttg agatgggcga ggcggctgcc atcttcatga 5521 ccgccacgcc accaggaacc cgtgacgcat ttccggactc caactcacca attatggaca 5581 ccgaagtgga agtcccagag agagcctgga gctcaggctt tgattgggtg acggatcact 5641 ctggaaaaac agtttggttt gttccaagcg tgaggaacgg caatgagatc gcagcttgtc 5701 tgacaaaggc tggaaaacgg gtcatacagc tcagcagaaa gacttttgag acagagttcc 5761 agaaaacaaa acatcaagag tgggactttg tcgtgacaac cgacatttca gagatgggcg 5821 ccaactttaa agctgaccgt gtcatagatt ccaggagatg cctaaagccg gtcatacttg 5881 atggcgagag agtcattctg gctggaccca tgcctgtcac acatgccagc gctgcccaga 5941 ggagggggcg cataggcagg aatcccaaca aacctggaga tgagtatctg tatggaggtg 6001 ggtgcgcaga gactgacgaa gaccatgcac actggcttga agcaagaatg ctccttgaca 6061 atatttacct ccaagatggc ctcatagcct cgctctatcg acctgaggcc gacaaagtag 6121 cagccattga gggagagttc aagcttagga cggagcaaag gaagaccttt gtggaactca 6181 tgaaaagagg agatcttcct gtttggctgg cctatcaggt tgcatctgcc ggaataactt 6241 acacagatag aagatggtgc tttgatggca cgaccaacaa caccataatg gaagacagtg 6301 tgccggcaga ggtgtggacc agacacggag agaaaagagt gctcaaaccg aggtggatgg 6361 acgccagagt ttgttcagat catgcggccc tgaagtcatt caaggagttt gccgctggga 6421 aaagaggagc ggcttttgga gtgatggaag ccctgggaac actgccagga cacatgacag 6481 agagattcca ggaagccatt gacaacctcg ctgtgctcat gcgggcagag actggaagca 6541 ggccttacaa agccgcggcg gcccaattgc cggagaccct agagaccatt atgcttttgg 6601 ggttgctggg aacagtctcg ctgggaatct ttttcgtctt gatgaggaac aagggcatag 6661 ggaagatggg ctttggaatg gtgactcttg gggccagcgc atggctcatg tggctctcgg 6721 aaattgagcc agccagaatt gcatgtgtcc tcattgttgt gttcctactg ctggtggtgc 6781 tcatacctga gccagaaaag caaagatctc cccaggacaa ccaaatggca atcatcatca 6841 tggtagcagt aggtcttctg ggcttgatca ccgccaatga actcggatgg ttggagagaa 6901 caaagagtga cctaagccat ctaatgggaa ggagagagga gggagcaacc ataggattct 6961 caatggacat tgacctgcgg ccagcctcag cttgggccat ctatgctgcc ttgacaactt 7021 tcatcacccc agccgtccaa catgcagtga ccacttcata caacaactac tccttaatgg 7081 cgatggccac gcaagctgga gtgttgtttg gtatgggcaa agggatgcca ttctacgcat 7141 gggactttgg agtcccgctg ctaatgatag gttgctactc acaattaaca cccctgaccc 7201 taatagtggc catcattttg ctcgtggcgc actacatgta cttgatccca gggctgcagg 7261 cagcagctgc gcgtgctgcc cagaagagaa cggcagctgg catcatgaag aaccctgttg 7321 tggatggaat agtggtgact gacattgaca caatgacaat tgacccccaa gtggagaaaa 7381 agatgggaca ggtgctactc atagcagtag ccgtctccag cgccatactg tcgcggaccg 7441 cctgggggtg gggggaggct ggggccctga tcacagccgc aacttccact ttgtgggaag 7501 gctctccgaa caagtactgg aactcctcta cagccacttc actgtgtaac atttttaggg 7561 gaagttactt ggctggagct tctctaatct acacagtaac aagaaacgct ggcttggtca 7621 agagacgtgg gggtggaaca ggagagaccc tgggagagaa atggaaggcc cgcttgaacc 7681 agatgtcggc cctggagttc tactcctaca aaaagtcagg catcaccgag gtgtgcagag 7741 aagaggcccg ccgcgccctc aaggacggtg tggcaacggg aggccatgct gtgtcccgag 7801 gaagtgcaaa gctgagatgg ttggtggagc ggggatacct gcagccctat ggaaaggtca 7861 ttgatcttgg atgtggcaga gggggctgga gttactacgc cgccaccatc cgcaaagttc 7921 aagaagtgaa aggatacaca aaaggaggcc ctggtcatga agaacccgtg ttggtgcaaa 7981 gctatgggtg gaacatagtc cgtctcaaga gtggggtgga cgtctttcat atggcggctg 8041 agccgtgtga cacgttgctg tgtgacatag gcgagtcatc atctagtcct gaagtcgaag 8101 aagcacggac gctcagagtc ctctccatgg tgggggattg gcttgaaaaa agaccaggag 8161 ccttytgtat aaaagtgttg tgcccataca ccagcactat gatggaaacc ctggagcgac 8221 tgcagcgtag gtatggggga ggactggtca gagtgccact ctcccgcaac tctacacatg 8281 agatgtactg ggtttctgga gcgaaaagca acaccataaa aagtgtgtcc accacgagcc 8341 agctcctctt ggggcgcatg gacgggccta ggaggccagt gaaatatgag gaggatgtga 8401 atctcggctc tggcacgcgg gctgtggtaa gctgcgctga agctcccaac atgaagatca 8461 ttggtaaccg cattgaaagg atccgcagtg agcacgcgga aacgtggttc tttgacgaga 8521 accacccata taggacatgg gcttaccatg gaagctatga ggcccccaca caagggtcag 8581 catcctctct agtaaacggg gttgtcaggc tcctgtcaaa accctgggat gtggtgactg 8641 gagtcacagg aatagccatg accgacacca caccgtatgg tcagcaaaga gttttcaagg 8701 aaaaagtgga cactagggtg ccagaccccc aagaaggcac tcgtcaggtt atgagcatgg 8761 tctcttcctg gttgtggaaa gagctaggca aacacaaacg gccacgagtc tgtaccaaag 8821 aagagttcat caacaaggtt cgtagcaatg cagcattagg ggcaatattt gaagaggaaa 8881 aagagtggaa gactgcagtg gaagctgtga acgatccaag gttctgggct ctagtggaca 8941 aggaaagaga gcaccacctg agaggagagt gccagagttg tgtgtacaac atgatgggaa 9001 aaagagaaaa gaaacaaggg gaatttggaa aggccaaggg cagccgcgcc atctggtata 9061 tgtggctagg ggctagattt ctagagttcg aagcccttgg attcttgaac gaggatcact 9121 ggatggggag agagaactca ggaggtggtg ttgaagggct gggattacaa agactcggat 9181 atgtcctaga agagatgagt cgcataccag gaggaaggat gtatgcagat gacactgctg 9241 gctgggatac ccgcatcagc aggtttgatc tagagaatga agctctaatc accaaccaaa 9301 tggagaaagg gcacagggcc ttggcattgg ccataatcaa gtacacatac caaaacaaag 9361 tggtaaaggt ccttagacca gctgaaaaag ggaaaacagt tatggacatt atttcgagac 9421 aagaccaaag ggggagcgga caagtcgtca cttacgctct taacacattt accaacctag 9481 tggtgcaact cattcggaat atggaggctg aggaagttct agagatgcaa gacttgtggc 9541 tgctgcggag gtcagagaaa gtgaccaact ggttgcagag caacggatgg gataggctca 9601 aacgaatggc agtcagtgga gatgattgcg ttgtgaagcc aattgatgat aggtttgcac 9661 atgccctcag gttcttgaat gatatgggaa aagttaggaa ggacacacaa gagtggaaac 9721 cctcaactgg atgggacaac tgggaagaag ttccgttttg ctcccaccac ttcaacaagc 9781 tccatctcaa ggacgggagg tccattgtgg ttccctgccg ccaccaagat gaactgattg 9841 gccgggcccg cgtctctcca ggggcgggat ggagcatccg ggagactgct tgcctagcaa 9901 aatcatatgc gcaaatgtgg cagctccttt atttccacag aagggacctc cgactgatgg 9961 ccaatgccat ttgttcatct gtgccagttg actgggttcc aactgggaga actacctggt 10021 caatccatgg aaagggagaa tggatgacca ctgaagacat gcttgtggtg tggaacagag 10081 tgtggattga ggagaacgac cacatggaag acaagacccc agttacgaaa tggacagaca 10141 ttccctattt gggaaaaagg gaagacttgt ggtgtggatc tctcataggg cacagaccgc 10201 gcaccacctg ggctgagaac attaaaaaca cagtcaacat ggtgcgcagg atcataggtg 10261 aggaagaaaa gtacatggac tacctatcca cccaagttcg ctacttgggt gaagaagggt 10321 ctacacctgg agtgctgtaa gcaccaatct taatgttgtc aggcctgcta gtcagccaca 10381 gcttggggaa agctgtgcag cctgtgaccc ccccaggaga agctgggaaa ccaagcctat 10441 agtcaggccg agaacgccat ggcacggaag aagccatgct gcctgtgagc ccctcagagg 10501 acactgagtc aaaaaacccc acgcgcttgg aggcgcagga tgggaaaaga aggtggcgac 10561 cttccccacc cttcaatctg gggcctgaac tggagatcag Link to comment Share on other sites More sharing options...
niman Posted October 24, 2016 Author Report Share Posted October 24, 2016 Pinellas update Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KY014316.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-039-URI polyprotein gene, complete cds 18516 18516 100% 0.0 100% KY014316.1 Select seq gb|KX922707.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds 18516 18516 100% 0.0 99% KX922707.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 18458 18458 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 18456 18456 100% 0.0 99% KU853012.1 Select seq gb|KY014304.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0180-SER polyprotein gene, complete cds 18444 18444 100% 0.0 99% KY014304.1 Select seq gb|KY014300.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0208-SER polyprotein gene, complete cds 18435 18435 100% 0.0 99% KY014300.1 Select seq dbj|LC190723.1| Zika virus genomic RNA, complete genome, strain: ZIKV/Hu/Yokohama/1/2016 18435 18435 100% 0.0 99% LC190723.1 Select seq gb|KY014321.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0115-SER polyprotein gene, complete cds 18431 18431 100% 0.0 99% KY014321.1 Select seq gb|KY014295.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-010-URI polyprotein gene, complete cds 18426 18426 100% 0.0 99% KY014295.1 Select seq gb|KX842449.2| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds 18426 18426 100% 0.0 99% KX842449.2 Select seq gb|KY014323.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-02-MOS polyprotein gene, complete cds 18413 18413 100% 0.0 99% KY014323.1 Select seq gb|KY014314.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0436-SER polyprotein gene, complete cds 18413 18413 100% 0.0 99% KY014314.1 Select seq gb|KX922703.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds 18413 18413 100% 0.0 99% KX922703.1 Select seq gb|KX838905.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds 18413 18413 100% 0.0 99% KX838905.2 Select seq gb|KX832731.1| Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds 18413 18413 100% 0.0 99% KX832731.1 Select seq gb|KX922706.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds 18410 18410 100% 0.0 99% KX922706.1 Select seq gb|KX922704.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds 18408 18408 100% 0.0 99% KX922704.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 18408 18408 100% 0.0 99% KX673530.1 Select seq gb|KY014322.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-03-MOS polyprotein gene, complete cds 18404 18404 100% 0.0 99% KY014322.1 Select seq gb|KX838906.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds 18404 18404 100% 0.0 99% KX838906.2 Select seq gb|KX838904.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds 18402 18402 100% 0.0 99% KX838904.2 Select seq gb|KY014324.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-01-MOS polyprotein gene, complete cds 18399 18399 100% 0.0 99% KY014324.1 Select seq gb|KX922705.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds 18392 18392 100% 0.0 99% KX922705.1 Select seq gb|KX922708.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds 18386 18386 100% 0.0 99% KX922708.1 Select seq gb|KY014299.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-04-MOS polyprotein gene, complete cds 18381 18381 100% 0.0 99% KY014299.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 18350 18350 100% 0.0 99% KX447510.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 18345 18345 100% 0.0 99% KX280026.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 18341 18341 100% 0.0 99% KX447512.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 18341 18341 100% 0.0 99% KX369547.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 18341 18341 100% 0.0 99% KU509998.3 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 18336 18336 100% 0.0 99% KJ776791.2 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 18336 18336 100% 0.0 99% KX447509.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 18336 18336 100% 0.0 99% KU991811.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 18336 18336 100% 0.0 99% KU729217.2 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 18332 18332 100% 0.0 99% KX447513.1 Select seq gb|KX811222.1| Zika virus isolate Brazil_2015_MG, complete genome 18327 18327 100% 0.0 99% KX811222.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 18327 18327 100% 0.0 99% KX197205.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 18327 18327 100% 0.0 99% KX447515.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 18327 18327 100% 0.0 99% KX447511.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 18327 18327 100% 0.0 99% KU321639.1 Select seq gb|KX879604.1| Zika virus isolate SN089, complete genome 18323 18323 100% 0.0 99% KX879604.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 18323 18323 100% 0.0 99% KX447514.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 18323 18323 100% 0.0 99% KX051563.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 18318 18318 100% 0.0 99% KX447516.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 18318 18318 100% 0.0 99% KU729218.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 18318 18318 100% 0.0 99% KU707826.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 18318 18318 100% 0.0 99% KU527068.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 18318 18318 100% 0.0 99% KU365779.1 Select seq gb|KX879603.1| Zika virus isolate SN062, complete genome 18314 18314 100% 0.0 99% KX879603.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 18314 18314 100% 0.0 99% KX262887.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 18314 18314 100% 0.0 99% KX197192.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 18314 18314 100% 0.0 99% KU926310.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 18314 18314 100% 0.0 99% KU926309.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 18314 18314 100% 0.0 99% KU501217.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 18309 18309 100% 0.0 99% KU940228.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 18309 18309 100% 0.0 99% KU501216.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 18305 18305 100% 0.0 99% KX694534.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 18305 18305 100% 0.0 99% KX198135.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 18305 18305 100% 0.0 99% KU365780.1 Select seq gb|KY014303.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0127-SER polyprotein gene, complete cds 18300 18300 100% 0.0 99% KY014303.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 18300 18300 100% 0.0 99% KU647676.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 18300 18300 100% 0.0 99% KU365777.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 18296 18296 100% 0.0 99% KX447517.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 18296 18296 100% 0.0 99% KU758877.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 18296 18296 100% 0.0 99% KX247646.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 18296 18296 100% 0.0 99% KX156776.1 Select seq gb|KY014297.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-6864-URI polyprotein gene, complete cds 18294 18294 100% 0.0 99% KY014297.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 18292 18292 99% 0.0 99% KU497555.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 18291 18291 100% 0.0 99% KX520666.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 18291 18291 100% 0.0 99% KX156774.1 Select seq gb|KY014327.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME167-PLA polyprotein gene, complete cds 18289 18289 100% 0.0 99% KY014327.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 18287 18287 100% 0.0 99% KU820897.5 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 18287 18287 100% 0.0 99% KX247632.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 18287 18287 100% 0.0 99% KX156775.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 18287 18287 100% 0.0 99% KX087102.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 18287 18287 100% 0.0 99% KU365778.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 18287 18287 100% 0.0 99% KU312312.1 Select seq gb|KY014315.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME152-SER polyprotein gene, complete cds 18283 18283 100% 0.0 99% KY014315.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 18282 18282 100% 0.0 99% KU922960.1 Select seq gb|KY014296.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ131D1-URI polyprotein gene, complete cds 18278 18278 100% 0.0 99% KY014296.1 Select seq gb|KX806557.2| Zika virus isolate TS17-2016, complete genome 18278 18278 100% 0.0 99% KX806557.2 Select seq gb|KX856011.1| Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome 18278 18278 100% 0.0 99% KX856011.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 18278 18278 100% 0.0 99% KX548902.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 18278 18278 100% 0.0 99% KX446951.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 18278 18278 100% 0.0 99% KU937936.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 18278 18278 100% 0.0 99% KU922923.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 18278 18278 100% 0.0 99% KU501215.1 Select seq gb|KX893855.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-2/2016, complete genome 18273 18273 100% 0.0 99% KX893855.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 18273 18273 100% 0.0 99% KX601168.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 18273 18273 100% 0.0 99% KX446950.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 18273 18273 100% 0.0 99% KX087101.2 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 18273 18273 100% 0.0 99% KU870645.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 18269 18269 100% 0.0 99% KX702400.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 18269 18269 100% 0.0 99% KX377337.1 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 18264 18264 100% 0.0 99% KX766029.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 18260 18260 100% 0.0 99% KU820898.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 18254 18254 100% 0.0 99% KX056898.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 18254 18254 100% 0.0 99% KU955590.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 18253 18253 100% 0.0 99% KX766028.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 18251 18251 100% 0.0 99% KU740184.2 Link to comment Share on other sites More sharing options...
niman Posted October 24, 2016 Author Report Share Posted October 24, 2016 LOCUS KY014295 10619 bp RNA linear VRL 21-OCT-2016 DEFINITION Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-010-URI polyprotein gene, complete cds. ACCESSION KY014295 VERSION KY014295.1 DBLINK BioProject: PRJNA344504 BioSample: SAMN05792872 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10619) AUTHORS Baniecki,M.L., Barnes,K.G., Bosch,I., Cannons,A., Cone,M., Freije,C.A., Gehrke,L., Gladden-Young,A.D., Gnirke,A., Hogan,K., Isern,S., Kopp,E., Luo,C.Y., MacInnis,B., Matranga,C.B., Metsky,H.C., Michael,S., Park,D.J., Qu,J., Sabeti,P.C., Tan,A., Tomkins-Tinch,C.H., West,K.L., Winnicki,S., Wohl,S. and Yozwiak,N.L. TITLE Direct Submission JOURNAL Submitted (20-OCT-2016) Viral Genomics, Infectious Disease Program (Infectious Disease Initiative), Broad Institute, 75 Ames St, Cambridge, MA 02142, USA COMMENT ##Assembly-Data-START## Assembly Method :: github.com/broadinstitute/viral-ngs v. v1.11.0-119-g0edb62f-dirty Assembly Name :: USA_2016_FL-010_URI-1 Coverage :: 40x Sequencing Technology :: Illumina; Swift LC ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10619 /organism="Zika virus" /mol_type="genomic RNA" /isolate="Zika virus/H.sapiens-wt/USA/2016/FL-010-URI" /isolation_source="urine" /host="Homo sapiens" /db_xref="taxon:64320" /country="USA: Miami, FL" /collection_date="22-Jun-2016" /collected_by="Florida Department of Health, Florida, USA" /note="patient traveled to Cuba and returned 21 days prior to sample collection, but may have been infected in Miami, FL" 5'UTR <1..87 CDS 88..10359 /note="contains structural and nonstructural proteins" /codon_start=1 /product="polyprotein" /protein_id="AOY08516.1" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSVVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLVNGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTIEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGEEEKYMDYLST QVRYLGEEGSTPGVL" 3'UTR 10360..>10619 ORIGIN 1 cagactgcga cagttcgagt ttgaagcgaa agctagcaac agtatcaaca ggttttattt 61 tggatttgga aacgagagtt tctggtcatg aaaaacccaa aaaagaaatc cggaggattc 121 cggattgtca atatgctaaa acgcggagta gcccgtgtga gcccctttgg gggcttgaag 181 aggctgccag ccggacttct gctgggtcat gggcccatca ggatggtctt ggcgattcta 241 gcctttttga gattcacggc aatcaagcca tcactgggtc tcatcaatag atggggttca 301 gtggggaaaa aagaggctat ggaaataata aagaagttca agaaagatct ggctgccatg 361 ctgagaataa tcaatgctag gaaggagaag aagagacgag gcgcagatac tagtgtcgga 421 attgttggcc tcctgctgac cacagctatg gcagcggagg tcactagacg tgggagtgca 481 tactacatgt acttggacag aaacgatgct ggggaggcca tatctttccc aaccacattg 541 gggatgaata agtgttatat acagatcatg gatcttggac acatgtgtga tgccaccatg 601 agctatgaat gccctatgct ggatgagggg gtggaaccag atgacgtcga ttgttggtgc 661 aacacgacgt caacttgggt tgtgtacgga acctgccatc acaaaaaagg tgaagcacgg 721 agatctagaa gagctgtgac gctcccctcc cattccacta ggaagctgca aacgcggtcg 781 caaacctggt tggaatcaag agaatacaca aagcacttga ttagagtcga aaattggata 841 ttcaggaacc ctggcttcgc gttagcagca gctgccatcg cttggctttt gggaagctca 901 acgagccaaa aagttatata cttggtcatg atactgctga ttgccccggc atacagcatc 961 aggtgcatag gagtcagcaa tagggacttt gtggaaggta tgtcaggtgg gacttgggtt 1021 gatgttgtct tggaacatgg aggctgtgtc accgtaatgg cacaggacaa accgactgtc 1081 gacatagagc tggttacaac aacagtcagc aacatggcgg aggtaagatc ctactgctat 1141 gaggcatcaa tatcagacat ggcttcggac agccgctgcc caacacaagg tgaagcctac 1201 cttgacaagc aatcagacac tcaatatgtc tgcaaaagaa cgttagtgga cagaggctgg 1261 ggaaatggat gtggactttt tggcaaaggg agcctggtga catgcgctaa gtttgcatgc 1321 tccaagaaaa tgaccgggaa gagcatccag ccagagaatc tggagtaccg gataatgctg 1381 tcagttcatg gctcccagca cagtgggatg atcgttaatg acacaggaca tgaaactgat 1441 gagaatagag cgaaggttga gataacgccc aattcaccaa gagccgaagc caccctgggg 1501 ggttttggaa gcctaggact ggattgtgaa ccgaggacag gccttgactt ttcagatttg 1561 tattacttga ctatgaataa caagcactgg ttggttcaca aggagtggtt ccacgacatt 1621 ccattacctt ggcacgctgg ggcagacacc ggaactccac actggaacaa caaagaagca 1681 ctggtagagt tcaaggacgc acatgccaaa aggcaaactg tcgtggttct agggagtcaa 1741 gaaggagcag ttcacacggc ccttgctgga gctctggagg ctgagatgga tggtgcaaag 1801 ggaaggctgt cctctggcca cttgaaatgt cgcctgaaaa tggataaact tagattgaag 1861 ggcgtgtcat actccttgtg taccgcagcg ttcacattca ccaagatccc ggctgaaaca 1921 ctgcacggga cagtcacagt ggaggtacag tacgcaggga cagatggacc ttgcaaggtt 1981 ccagctcaga tggcggtgga catgcaaact ctgaccccag ttgggaggtt gataaccgcc 2041 aaccccgtaa tcactgaaag cactgagaac tctaagatga tgctggaact tgatccacca 2101 tttggggact cttacattgt cataggagtc ggggagaaga agatcaccca ccactggcac 2161 aggagtggca gcaccattgg aaaagcattt gaagccactg tgagaggtgc caagagaatg 2221 gcagtcttgg gagatacagc ctgggacttt ggatcagttg gaggcgctct caactcattg 2281 ggcaagggca tccatcaaat ttttggagca gctttcaaat cattgtttgg aggaatgtcc 2341 tggttctcac aaatcctcat tggaacgttg ctgatgtggt tgggtctgaa cacaaagaat 2401 ggatctattt ccctcatgtg cttggcctta gggggagtgt tgatcttctt atccacagcc 2461 gtctctgctg atgtggggtg ctcggtggac ttctcaaaga aggagacgag atgcggtaca 2521 ggggtgttcg tctataacga cgttgaagcc tggagggaca ggtacaagta ccatcctgac 2581 tccccccgta gattggcagc agcagtcaag caagcctggg aagatggtat ctgcgggatc 2641 tcctctgttt caagaatgga aaacatcatg tggagatcag tagaagggga gctcaatgca 2701 atcctggaag agaatggagt tcaactgacg gtcgttgtgg gatctgtaaa aaaccccatg 2761 tggagaggtc cacagagatt gcccgtgcct gtgaacgagc tgccccacgg ctggaaggct 2821 tgggggaaat cgtacttcgt tagagcagca aagacaaata acagctttgt cgtggatggt 2881 gacacactga aggaatgccc actcaaacat agagcatgga acagctttct tgtggaggat 2941 catgggttcg gggtatttca cactagtgtc tggctcaagg ttagagaaga ttattcatta 3001 gagtgtgatc cagccgttat tggaacagct gttaagggaa aggaggctgt acacagtgat 3061 ctaggctact ggattgagag tgagaagaat gacacatgga ggctgaagag ggcccatctg 3121 atcgagatga aaacatgtga atggccaaag tcccacacat tgtggacaga tggaatagaa 3181 gagagtgatc tgatcatacc caagtcttta gctgggccac tcagccatca caataccaga 3241 gagggctaca ggacccaaat gaaagggcca tggcacagtg aagagcttga aattcggttt 3301 gaggaatgcc caggcactaa ggtccacgtg gaggaaacat gtggaacaag aggaccatct 3361 ctgagatcaa ccactgcaag cggaagggtg atcgaggaat ggtgctgcag ggagtgcaca 3421 atgcccccac tgtcgttccg ggctaaagat ggctgttggt atggaatgga gataaggccc 3481 aggaaagaac cagaaagcaa cttagtaagg tcagtggtga ctgcaggatc aactgatcac 3541 atggatcact tctcccttgg agtgcttgtg attctgctca tggtgcagga agggctgaag 3601 aagagaatga ccacaaagat catcataagc acatcaatgg cagtgctggt agctatgatc 3661 ctgggaggat tttcaatgag tgacctggct aagcttgcaa ttttgatggg tgccaccttc 3721 gcggaaatga acactggagg agatgtagct catctggcgc tgatagcggc attcaaagtc 3781 agaccagcgt tgctggtatc tttcatcttc agagctaatt ggacaccccg tgaaagcatg 3841 ctgctggcct tggcctcgtg tcttttgcaa actgcgatct ccgccttgga aggcgacctg 3901 atggttctca tcaatggttt tgctttggcc tggttggcaa tacgagcgat ggttgttcca 3961 cgcactgata acatcacctt ggcaatcctg gctgctctga caccactggc ccggggcaca 4021 ctgcttgtgg cgtggagagc aggccttgct acttgcgggg ggtttatgct cctctctctg 4081 aagggaaaag gcagtgtgaa gaagaactta ccatttgtca tggccctggg actaaccgct 4141 gtgaggctgg tcgaccccat caacgtggtg ggactgctgt tgctcacaag gagtgggaag 4201 cggagctggc cccctagcga agtactcaca gctgttggcc tgatatgcgc attggctgga 4261 gggttcgcca aggcagatat agagatggct gggcccatgg ccgcggtcgg tctgctaatt 4321 gtcagttacg tggtctcagg aaagagtgtg gacatgtaca ttgaaagagc aggtgacatc 4381 acatgggaaa aagatgcgga agtcactgga aacagtcccc ggctcgatgt ggcgctagat 4441 gagagtggtg atttctccct ggtggaggat gacggtcccc ccatgagaga gatcatactc 4501 aaggtggtcc tgatgaccat ctgtggcatg aacccaatag ccataccctt tgcagctgga 4561 gcgtggtacg tatacgtgaa gactggaaaa aggagtggtg ctctatggga tgtgcctgct 4621 cccaaggaag taaaaaaggg ggagaccaca gatggagtgt acagagtaat gactcgtaga 4681 ctgctaggtt caacacaagt tggagtggga gttatgcaag agggggtctt tcacactatg 4741 tggcacgtca caaaaggatc cgcgctgaga agcggtgaag ggagacttga tccatactgg 4801 ggagatgtca agcaggatct ggtgtcatac tgtggtccat ggaagctaga tgccgcctgg 4861 gacgggcaca gcgaggtgca gctcttggcc gtgccccccg gagagagagc gaggaacatc 4921 cagactctgc ccggaatatt taagacaaag gatggggaca ttggagcggt tgcgctggat 4981 tacccagcag gaacttcagg atctccaatc ctagacaagt gtgggagagt gataggactt 5041 tatggcaatg gggtcgtgat caaaaatggg agttatgtta gtgccatcac ccaagggagg 5101 agggaggaag agactcctgt tgagtgcttc gagccttcga tgctgaagaa gaagcagcta 5161 actgtcttag acttgcatcc tggagctggg aaaaccagga gagttcttcc tgaaatagtc 5221 cgtgaagcta taaaaacaag actccgtact gtgatcttag ctccaaccag ggttgtcgct 5281 gctgaaatgg aggaagccct tagagggctt ccagtgcgtt atatgacaac agcagtcaat 5341 gtcacccatt ctggaacaga aatcgtcgac ttaatgtgcc atgccacctt cacttcacgt 5401 ctactacagc caatcagagt ccccaactat aatctgtata ttatggatga ggcccacttc 5461 acagatccct caagtatagc agcaagagga tacatttcaa caagggttga gatgggcgag 5521 gcggctgcca tcttcatgac cgccacgcca ccaggaaccc gtgacgcatt tccggactcc 5581 aactcaccaa ttatggacac cgaagtggaa gtcccagaga gagcctggag ctcaggcttt 5641 gattgggtga cggatcattc tggaaaaaca gtttggtttg ttccaagcgt gaggaacggc 5701 aatgagatcg cagcttgtct gacaaaggct ggaaaacggg tcatacagct cagcagaaag 5761 acttttgaga cagagttcca gaaaacaaaa catcaagagt gggactttgt cgtgacaacc 5821 gacatttcag agatgggcgc caactttaaa gctgaccgtg tcatagattc caggagatgc 5881 ctaaagccgg tcatacttga tggcgagaga gtcattctgg ctggacccat gcctgtcaca 5941 catgccagcg ctgcccagag gagggggcgc ataggcagga atcccaacaa acctggagat 6001 gagtatctgt atggaggtgg gtgcgcagag actgacgaag accatgcaca ctggcttgaa 6061 gcaagaatgc tccttgacaa tatttacctc caagatggcc tcatagcctc gctctatcga 6121 cctgaggccg acaaagtagc agccattgag ggagagttca agcttaggac ggagcaaagg 6181 aagacctttg tggaactcat gaaaagagga gatcttcctg tttggctggc ctatcaggtt 6241 gcatctgccg gaataactta cacagataga agatggtgct ttgatggcac gaccaacaac 6301 accataatgg aagacagtgt gccggcagag gtgtggacca gacacggaga gaaaagagtg 6361 ctcaaaccga ggtggatgga cgccagagtt tgttcagatc atgcggccct gaagtcattc 6421 aaggagtttg ccgctgggaa aagaggagcg gcttttggag tgatggaagc cctgggaaca 6481 ctgccaggac acatgacaga gagattccag gaagccattg acaacctcgc tgtgctcatg 6541 cgggcagaga ctggaagcag gccttacaaa gccgcggcgg cccaattgcc ggagacccta 6601 gagaccatta tgcttttggg gttgctggga acagtctcgc tgggaatctt tttcgtcttg 6661 atgaggaaca agggcatagg gaagatgggc tttggaatgg tgactcttgg ggccagcgca 6721 tggctcatgt ggctctcgga aattgagcca gccagaattg catgtgtcct cattgttgtg 6781 ttcctattgc tggtggtgct catacctgag ccagaaaagc aaagatctcc ccaggacaac 6841 caaatggcaa tcatcatcat ggtagcagta ggtcttctag gcttgatcac cgccaatgaa 6901 ctcggatggt tggagagaac aaagagtgac ctaagccatc taatgggaag gagagaggag 6961 ggagcaacca taggattctc aatggacatt gacctgcggc cagcctcagc ttgggccatc 7021 tatgctgcct tgacaacttt cattacccca gccgtccaac atgcagtgac cacttcatac 7081 aacaactact ccttaatggc gatggccacg caagctggag tgttgtttgg tatgggcaaa 7141 gggatgccat tctacgcatg ggactttgga gtcccgctgc taatgatagg ttgctactca 7201 caattaacac ccctgaccct aatagtggcc atcattttgc tcgtggcgca ctacatgtac 7261 ttgatcccag ggctgcaggc agcagctgcg cgtgctgccc agaagagaac ggcagctggc 7321 atcatgaaga accctgttgt ggatggaata gtggtgactg acattgacac aatgacaatt 7381 gacccccaag tggagaaaaa gatgggacag gtgctactca tagcagtagc cgtctccagc 7441 gccatactgt cgcggaccgc ctgggggtgg ggggaggctg gggccctgat cacagccgca 7501 acttccactt tgtgggaagg ctctccgaac aagtactgga actcctctac agccacttca 7561 ctgtgtaaca tttttagggg aagttacttg gctggagctt ctctaatcta cacagtaaca 7621 agaaacgctg gcttggtcaa gagacgtggg ggtggaacag gagagaccct gggagagaaa 7681 tggaaggccc gcttgaacca gatgtcggcc ctggagttct actcctacaa aaagtcaggc 7741 atcaccgagg tgtgcagaga agaggcccgc cgcgccctca aggacggtgt ggcaacggga 7801 ggccatgctg tgtcccgagg aagtgcaaag ctgagatggt tggtggagcg gggatacctg 7861 cagccctatg gaaaggtcat tgatcttgga tgtggcagag ggggctggag ttactacgcc 7921 gccaccatcc gcaaagttca agaagtgaaa ggatacacaa aaggaggccc tggtcatgaa 7981 gaacccgtgt tggtgcaaag ctatgggtgg aacatagtcc gtctcaagag tggggtggac 8041 gtctttcata tggcggctga gccgtgtgac acgttgctat gtgacatagg tgagtcatca 8101 tctagtcctg aagtggaaga agcacggacg ctcagagtcc tctccatggt gggggattgg 8161 cttgaaaaaa gaccaggagc cttttgtata aaagtgttgt gcccatacac cagcactatg 8221 atggaaaccc tggagcgact gcagcgtagg tatgggggag gactggtcag agtgccactc 8281 tcccgcaact ctacacatga gatgtactgg gtctctggag cgaaaagcaa caccataaaa 8341 agtgtgtcca ccacgagcca gctcctcttg gggcgcatgg acgggcctag gaggccagtg 8401 aaatatgagg aggatgtgaa tctcggctct ggcacgcggg ctgtggtaag ctgcgctgaa 8461 gctcccaaca tgaagatcat tggtaaccgc attgaaagga tccgcagtga gcacgcggaa 8521 acgtggttct ttgacgagaa ccacccatat aggacatggg cttaccatgg aagctatgag 8581 gcccccacac aagggtcagc atcctctcta gtaaacgggg ttgtcaggct cctgtcaaaa 8641 ccctgggatg tggtgactgg agtcacagga atagccatga ccgacaccac accgtatggt 8701 cagcaaagag ttttcaagga aaaagtggac actagggtgc cagaccccca agaaggcact 8761 cgtcaggtta tgagcatggt ctcttcctgg ttgtggaaag agctaggcaa acacaaacgg 8821 ccacgagtct gtaccaaaga agagttcatc aacaaggttc gtagcaatgc agcattaggg 8881 gcaatatttg aagaggaaaa agagtggaag actgcagtgg aagctgtgaa cgatccaagg 8941 ttctgggctc tagtggacaa ggaaagagag caccacctga gaggagagtg ccagagttgt 9001 gtgtacaaca tgatgggaaa aagagaaaag aaacaagggg aatttggaaa ggccaagggc 9061 agccgcgcca tctggtatat gtggctaggg gctagatttc tagagttcga agcccttgga 9121 ttcttgaacg aggatcactg gatggggaga gagaactcag gaggtggtgt tgaagggctg 9181 ggattacaaa gactcggata tgtcctagaa gagatgagtc gcataccagg aggaaggatg 9241 tatgcagatg acactgctgg ctgggatacc cgcatcagca ggtttgatct agagaatgaa 9301 gctctaatca ccaaccaaat ggagaaaggg cacagggcct tggcattggc cataatcaag 9361 tacacatacc aaaacaaagt ggtaaaggtc cttagaccag ctgaaaaagg gaaaacagtt 9421 atggacatta tttcgagaca agaccaaagg gggagcggac aagttgtcac ttacgctctt 9481 aacacattta ccaacctagt ggtgcaactc attcggaata tggaggctga ggaagttcta 9541 gagatgcaag acttgtggct gctgcggagg tcagagaaag tgaccaactg gttgcagagc 9601 aacggatggg ataggctcaa acgaatggca gtcagtggag atgattgcgt tgtgaagcca 9661 attgatgata ggtttgcaca tgccctcagg ttcttgaatg atatgggaaa agttaggaag 9721 gacacacaag agtggaaacc ctcaactgga tgggacaact gggaagaagt tccgttttgc 9781 tcccaccact tcaacaagct ccatctcaag gacgggaggt ccattgtggt tccctgccgc 9841 caccaagatg aactgattgg ccgggcccgc gtctctccag gggcgggatg gagcatccgg 9901 gagactgctt gcctagcaaa atcatatgcg caaatgtggc agctccttta tttccacaga 9961 agggacctcc gactgatggc caatgccatt tgttcatctg tgccagttga ctgggttcca 10021 actgggagaa ctacctggtc aatccatgga aagggagaat ggatgaccat tgaagacatg 10081 cttgtggtgt ggaacagagt gtggattgag gagaacgacc acatggaaga caagacccca 10141 gttacgaaat ggacagacat tccctatttg ggaaaaaggg aagacttgtg gtgtggatct 10201 ctcatagggc acagaccgcg caccacctgg gctgagaaca ttaaaaacac agtcaacatg 10261 gtgcgcagga tcataggtga ggaagaaaag tacatggact acctatccac ccaagtccgc 10321 tacttgggtg aagaagggtc tacacctgga gtgctgtaag caccaatctt aatgttgtca 10381 ggcctgctag tcagccacag cttggggaaa gctgtgcagc ctgtgacccc cccaggagaa 10441 gctgggaaac caagcctata gtcaggccga gaacgccatg gcacggaaga agccatgctg 10501 cctgtgagcc cctcagagga cactgagtca aaaaacccca cgcgcttgga ggcgcaggat 10561 gggaaaagaa ggtggcgacc ttccccaccc ttcaatctgg ggcctgaact ggagatcag Link to comment Share on other sites More sharing options...
niman Posted October 24, 2016 Author Report Share Posted October 24, 2016 Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KY014295.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-010-URI polyprotein gene, complete cds 18525 18525 100% 0.0 100% KY014295.1 Select seq gb|KX842449.2| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds 18525 18525 100% 0.0 100% KX842449.2 Select seq gb|KY014323.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-02-MOS polyprotein gene, complete cds 18511 18511 100% 0.0 99% KY014323.1 Select seq gb|KX922703.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds 18511 18511 100% 0.0 99% KX922703.1 Select seq gb|KX838905.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds 18511 18511 100% 0.0 99% KX838905.2 Select seq gb|KX832731.1| Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds 18511 18511 100% 0.0 99% KX832731.1 Select seq gb|KX922706.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds 18509 18509 100% 0.0 99% KX922706.1 Select seq gb|KX922704.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds 18507 18507 100% 0.0 99% KX922704.1 Select seq gb|KX838904.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds 18502 18502 100% 0.0 99% KX838904.2 Select seq gb|KY014324.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-01-MOS polyprotein gene, complete cds 18498 18498 100% 0.0 99% KY014324.1 Select seq gb|KY014304.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0180-SER polyprotein gene, complete cds 18462 18462 100% 0.0 99% KY014304.1 Select seq gb|KY014300.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0208-SER polyprotein gene, complete cds 18462 18462 100% 0.0 99% KY014300.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 18456 18456 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 18456 18456 100% 0.0 99% KU853012.1 Select seq dbj|LC190723.1| Zika virus genomic RNA, complete genome, strain: ZIKV/Hu/Yokohama/1/2016 18453 18453 100% 0.0 99% LC190723.1 Select seq gb|KY014321.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0115-SER polyprotein gene, complete cds 18447 18447 100% 0.0 99% KY014321.1 Select seq gb|KX922707.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds 18435 18435 100% 0.0 99% KX922707.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 18435 18435 100% 0.0 99% KX673530.1 Select seq gb|KY014322.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-03-MOS polyprotein gene, complete cds 18429 18429 100% 0.0 99% KY014322.1 Select seq gb|KY014314.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0436-SER polyprotein gene, complete cds 18429 18429 100% 0.0 99% KY014314.1 Select seq gb|KX838906.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds 18429 18429 100% 0.0 99% KX838906.2 Select seq gb|KY014316.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-039-URI polyprotein gene, complete cds 18426 18426 100% 0.0 99% KY014316.1 Select seq gb|KX922705.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds 18419 18419 100% 0.0 99% KX922705.1 Select seq gb|KX922708.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds 18411 18411 100% 0.0 99% KX922708.1 Select seq gb|KY014299.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-04-MOS polyprotein gene, complete cds 18408 18408 100% 0.0 99% KY014299.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 18366 18366 100% 0.0 99% KX447510.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 18363 18363 100% 0.0 99% KX280026.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 18357 18357 100% 0.0 99% KX447512.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 18357 18357 100% 0.0 99% KX369547.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 18357 18357 100% 0.0 99% KU509998.3 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 18354 18354 100% 0.0 99% KJ776791.2 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 18354 18354 100% 0.0 99% KX447509.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 18354 18354 100% 0.0 99% KU991811.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 18354 18354 100% 0.0 99% KU729217.2 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 18348 18348 100% 0.0 99% KX447513.1 Select seq gb|KX811222.1| Zika virus isolate Brazil_2015_MG, complete genome 18345 18345 100% 0.0 99% KX811222.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 18345 18345 100% 0.0 99% KX197205.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 18345 18345 100% 0.0 99% KX447515.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 18345 18345 100% 0.0 99% KX447511.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 18345 18345 100% 0.0 99% KU321639.1 Select seq gb|KX879604.1| Zika virus isolate SN089, complete genome 18339 18339 100% 0.0 99% KX879604.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 18339 18339 100% 0.0 99% KX447514.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 18339 18339 100% 0.0 99% KX051563.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 18336 18336 100% 0.0 99% KX447516.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 18336 18336 100% 0.0 99% KU729218.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 18336 18336 100% 0.0 99% KU707826.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 18336 18336 100% 0.0 99% KU527068.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 18336 18336 100% 0.0 99% KU365779.1 Select seq gb|KX879603.1| Zika virus isolate SN062, complete genome 18330 18330 100% 0.0 99% KX879603.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 18330 18330 100% 0.0 99% KX262887.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 18330 18330 100% 0.0 99% KX197192.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 18330 18330 100% 0.0 99% KU926310.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 18330 18330 100% 0.0 99% KU926309.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 18327 18327 100% 0.0 99% KU940228.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 18321 18321 100% 0.0 99% KX694534.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 18321 18321 100% 0.0 99% KX198135.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 18321 18321 100% 0.0 99% KU501217.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 18321 18321 100% 0.0 99% KU365780.1 Select seq gb|KY014303.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0127-SER polyprotein gene, complete cds 18318 18318 100% 0.0 99% KY014303.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 18318 18318 100% 0.0 99% KU647676.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 18318 18318 100% 0.0 99% KU501216.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 18318 18318 100% 0.0 99% KU365777.1 Select seq gb|KY014297.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-6864-URI polyprotein gene, complete cds 18312 18312 100% 0.0 99% KY014297.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 18312 18312 100% 0.0 99% KX447517.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 18312 18312 100% 0.0 99% KU758877.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 18312 18312 100% 0.0 99% KX247646.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 18312 18312 100% 0.0 99% KX156776.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 18309 18309 100% 0.0 99% KX520666.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 18309 18309 100% 0.0 99% KX156774.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 18309 18309 99% 0.0 99% KU497555.1 Select seq gb|KY014327.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME167-PLA polyprotein gene, complete cds 18305 18305 100% 0.0 99% KY014327.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 18303 18303 100% 0.0 99% KU820897.5 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 18303 18303 100% 0.0 99% KX247632.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 18303 18303 100% 0.0 99% KX156775.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 18303 18303 100% 0.0 99% KX087102.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 18303 18303 100% 0.0 99% KU365778.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 18303 18303 100% 0.0 99% KU312312.1 Select seq gb|KY014315.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME152-SER polyprotein gene, complete cds 18300 18300 100% 0.0 99% KY014315.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 18300 18300 100% 0.0 99% KU922960.1 Select seq gb|KY014296.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ131D1-URI polyprotein gene, complete cds 18294 18294 100% 0.0 99% KY014296.1 Select seq gb|KX806557.2| Zika virus isolate TS17-2016, complete genome 18294 18294 100% 0.0 99% KX806557.2 Select seq gb|KX856011.1| Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome 18294 18294 100% 0.0 99% KX856011.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 18294 18294 100% 0.0 99% KX548902.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 18294 18294 100% 0.0 99% KX446951.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 18294 18294 100% 0.0 99% KU937936.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 18294 18294 100% 0.0 99% KU922923.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 18294 18294 100% 0.0 99% KU501215.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 18291 18291 100% 0.0 99% KX601168.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 18291 18291 100% 0.0 99% KX446950.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 18291 18291 100% 0.0 99% KX087101.2 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 18291 18291 100% 0.0 99% KU870645.1 Select seq gb|KX893855.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-2/2016, complete genome 18289 18289 100% 0.0 99% KX893855.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 18285 18285 100% 0.0 99% KX702400.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 18285 18285 100% 0.0 99% KX377337.1 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 18276 18276 100% 0.0 99% KX766029.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 18276 18276 100% 0.0 99% KU820898.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 18273 18273 100% 0.0 99% KX056898.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 18273 18273 100% 0.0 99% KU955590.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 18269 18269 100% 0.0 99% KX766028.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 18267 18267 100% 0.0 99% KU740184.2 Link to comment Share on other sites More sharing options...
niman Posted October 25, 2016 Author Report Share Posted October 25, 2016 LOCUS KY014298 10364 bp RNA linear VRL 21-OCT-2016 DEFINITION Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-032-URI polyprotein gene, complete cds. ACCESSION KY014298 VERSION KY014298.1 DBLINK BioProject: PRJNA344504 BioSample: SAMN05844992 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10364) AUTHORS Baniecki,M.L., Barnes,K.G., Bosch,I., Cannons,A., Cone,M., Freije,C.A., Gehrke,L., Gladden-Young,A.D., Gnirke,A., Hogan,K., Isern,S., Kopp,E., Luo,C.Y., MacInnis,B., Matranga,C.B., Metsky,H.C., Michael,S., Park,D.J., Qu,J., Sabeti,P.C., Tan,A., Tomkins-Tinch,C.H., West,K.L., Winnicki,S., Wohl,S. and Yozwiak,N.L. TITLE Direct Submission JOURNAL Submitted (20-OCT-2016) Viral Genomics, Infectious Disease Program (Infectious Disease Initiative), Broad Institute, 75 Ames St, Cambridge, MA 02142, USA COMMENT ##Assembly-Data-START## Assembly Method :: github.com/broadinstitute/viral-ngs v. v1.11.0-119-g0edb62f-dirty Assembly Name :: USA_2016_FL-032_URI-1 Sequencing Technology :: Illumina; Swift LC ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10364 /organism="Zika virus" /mol_type="genomic RNA" /isolate="Zika virus/H.sapiens-wt/USA/2016/FL-032-URI" /isolation_source="urine" /host="Homo sapiens" /db_xref="taxon:64320" /country="USA: Dade County, FL" /collection_date="05-Aug-2016" /collected_by="Florida Department of Health, Florida, USA" 5'UTR <1..68 CDS 69..10340 /note="contains structural and nonstructural proteins" /codon_start=1 /product="polyprotein" /protein_id="AOY08519.1" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSVVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGXYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLVNGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTIEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGXEEKYMDYLST QVRYLGEEGSTPGVL" gap 4938..5434 /estimated_length=497 3'UTR 10341..>10364 ORIGIN 1 tttgaagcga aagctagcaa cagtatcaac aggttttatt ttggatttgg aaacgagagt 61 ttctggtcat gaaaaaccca aaaaagaaat ccggaggatt ccggattgtc aatatgctaa 121 aacgcggagt agcccgtgtg agcccctttg ggggcttgaa gaggctgcca gccggacttc 181 tgctgggtca tgggcccatc aggatggtct tggcgattct agcctttttg agattcacgg 241 caatcaagcc atcactgggt ctcatcaata gatggggttc agtggggaaa aaagaggcta 301 tggaaataat aaagaagttc aagaaagatc tggctgccat gctgagaata atcaatgcta 361 ggaaggagaa gaagagacga ggcgcagata ctagtgtcgg aattgttggc ctcctgctga 421 ccacagctat ggcagcggag gtcactagac gtgggagtgc atactacatg tacttggaca 481 gaaacgatgc tggggaggcc atatcttttc caaccacatt ggggatgaat aagtgttata 541 tacagatcat ggatcttgga cacatgtgtg atgccaccat gagctatgaa tgccctatgc 601 tggatgaggg ggtggaacca gatgacgtcg attgttggtg caacacgacg tcaacttggg 661 ttgtgtacgg aacctgccat cacaaaaaag gtgaagcacg gagatctaga agagctgtga 721 cgctcccctc ccattccact aggaagctgc aaacgcggtc gcaaacctgg ttggaatcaa 781 gagaatacac aaagcacttg attagagtcg aaaattggat attcaggaac cctggcttcg 841 cgttagcagc agctgccatc gcttggcttt tgggaagctc aacgagccaa aaagtcatat 901 acttggtcat gatactgctg attgccccgg catacagcat caggtgcata ggagtcagca 961 atagggactt tgtggaaggt atgtcaggtg ggacttgggt tgatgttgtc ttggaacatg 1021 gaggttgtgt caccgtaatg gcacaggaca aaccgactgt cgacatagag ctggttacaa 1081 caacagtcag caacatggcg gaggtaagat cctactgcta tgaggcatca atatcagaca 1141 tggcttcgga cagccgctgc ccaacacaag gtgaagccta ccttgacaag caatcagaca 1201 ctcaatatgt ctgcaaaaga acgttagtgg acagaggctg gggaaatgga tgtggacttt 1261 ttggcaaagg gagcctggtg acatgcgcta agtttgcatg ctccaagaaa atgaccggga 1321 agagcatcca gccagagaat ctggagtacc ggataatgct gtcagttcat ggctcccagc 1381 acagtgggat gatcgttaat gacacaggac atgaaactga tgagaataga gcgaaggttg 1441 agataacgcc caattcacca agagccgaag ccaccctggg gggttttgga agcctaggac 1501 ttgattgtga accgaggaca ggccttgact tctcagattt gtattacttg actatgaata 1561 acaagcactg gttggttcac aaggagtggt tccacgacat tccattacct tggcacgctg 1621 gggcagacac cggaactcca cactggaaca acaaagaagc actggtagag ttcaaggacg 1681 cacatgccaa aaggcaaact gtcgtggttc tagggagtca agaaggagca gttcacacgg 1741 cccttgctgg agctctggag gctgagatgg atggtgcaaa gggaaggctg tcctctggcc 1801 acttgaaatg tcgcctgaaa atggataaac ttagattgaa gggcgtgtca tactccttgt 1861 gtaccgcagc gttcacattc accaagatcc cggctgaaac actgcacggg acagtcacag 1921 tggaggtaca gtacgcaggg acagatggac cttgcaaggt tccagctcag atggcggtgg 1981 acatgcaaac tctgacccca gttgggaggt tgataaccgc caaccccgta atcactgaaa 2041 gcactgagaa ctctaagatg atgctggaac ttgatccacc atttggggac tcttacattg 2101 tcataggagt cggggagaag aagatcaccc accactggca caggagtggc agcaccattg 2161 gaaaagcatt tgaagccact gtgagaggtg ccaagagaat ggcagtcttg ggagacacag 2221 cctgggactt tggatcagtt ggaggcgctc tcaactcatt gggcaagggc atccatcaaa 2281 tttttggagc agctttcaaa tcattgtttg gaggaatgtc ctggttctca caaatcctca 2341 ttggaacgtt gctgatgtgg ttgggtctga acacaaagaa tggatctatt tccctcatgt 2401 gcttggcctt agggggagtg ctgatcttct tatccacagc cgtctctgct gatgtggggt 2461 gctcggtgga cttctcaaag aaggagacga gatgcggtac aggggtgttc gtctataacg 2521 acgttgaagc ctggagggac aggtacaagt accatcctga ctccccccgt agattggcag 2581 cagcagtcaa gcaagcctgg gaagatggta tctgcgggat ctcctctgtt tcaagaatgg 2641 aaaacatcat gtggagatca gtagaagggg agctcaatgc aatcctggaa gagaatggag 2701 ttcaactgac ggtcgttgtg ggatctgtaa aaaaccccat gtggagaggt ccacagagat 2761 tgcccgtgcc tgtgaacgag ctgccccacg gctggaaggc ttgggggaaa tcgtacttcg 2821 ttagagcagc aaagacaaat aacagctttg tcgtggatgg tgacacactg aaggaatgcc 2881 cactcaaaca tagagcatgg aacagctttc ttgtggagga tcatgggttc ggggtattcc 2941 acactagtgt ctggctcaag gttagagaag attattcatt agagtgtgat ccagccgtta 3001 ttggaacagc tgttaaggga aaggaggctg tacacagtga tctaggctac tggattgaga 3061 gtgagaagaa tgacacatgg aggctgaaga gggcccatct gatcgagatg aaaacatgtg 3121 aatggccaaa gtcccacaca ttgtggacag atggaataga agagagtgat ctgatcatac 3181 ccaagtcttt agctgggcca ctcagccatc acaataccag agagggctac aggacccaaa 3241 tgaaagggcc atggcacagt gaagagcttg aaattcggtt tgaggaatgc ccaggcacta 3301 aggtccacgt ggaggaaaca tgtggaacaa gaggaccatc tctgagatca accactgcaa 3361 gcggaagggt gatcgaggaa tggtgctgca gggagtgcac aatgccccca ctgtcgttcc 3421 gggctaaaga tggctgttgg tatggaatgg agataaggcc caggaaagaa ccagaaagca 3481 acttagtaag gtcagtggtg actgcaggat caactgatca catggatcac ttctcccttg 3541 gagtgcttgt gattctgctc atggtgcagg aagggctgaa gaagagaatg accacaaaga 3601 tcatcataag cacatcaatg gcagtgctgg tagctatgat cctgggagga ttttcaatga 3661 gtgacctggc taagcttgca attttgatgg gtgccacctt cgcggaaatg aacactggag 3721 gagatgtagc tcatctggcg ctgatagcgg cattcaaagt cagaccagcg ttgctggtat 3781 ctttcatctt cagagctaat tggacacccc gtgaaagcat gctgctggcc ttggcctcgt 3841 gtcttttgca aactgcgatc tccgccttgg aaggcgacct gatggttctc atcaatggtt 3901 ttgctttggc ctggttggca atacgagcga tggttgttcc acgcactgat aacatcacct 3961 tggcaatcct ggctgctctg acaccactgg cccggggcac actgcttgtg gcgtggagag 4021 caggccttgc tacttgcggg gggtttatgc tcctctctct gaagggaaaa ggcagtgtga 4081 agaagaactt accatttgtc atggccctgg gactaaccgc tgtgagactg gtcgacccca 4141 tcaacgtggt gggactgctg ttgctcacaa ggagtgggaa gcggagctgg ccccctagcg 4201 aagtactcac agctgttggc ctgatatgcg cattggctgg agggttcgcc aaggcagata 4261 tagagatggc tgggcccatg gccgcggtcg gtctgctaat tgtcagttac gtggtctcag 4321 gaaagagtgt ggacatgtac attgaaagag caggtgacat cacatgggaa aaagatgcgg 4381 aagtcactgg aaacagtccc cggctcgatg tggcgctaga tgagagtggt gatttctccc 4441 tggtggagga tgacggtccc cccatgagag agatcatact caaggtggtc ctgatgacca 4501 tctgtggcat gaacccaata gccatmccct ttgcagctgg agcgtggtac gtatacgtga 4561 agactggaaa aaggagtggt gctctatggg atgtgcctgc tcccaaggaa gtaaaaaagg 4621 gggagaccac agatggaktg tacagagtaa tgactcgtag actgctaggt tcaacacaag 4681 ttggagtggg agttatgcaa gagggggtct ttcacactat gtggcacgtc acaaaaggat 4741 ccgcgctgag aagcggtgaa gggagacttg atccatactg gggagatgtc aagcaggatc 4801 tggtgtcata ctgtggtcca tggaagctag atgccgcctg ggacgggcac agcgaggtgc 4861 agctcttggc cgtgcccccc ggagagagag cgaggaacat ccagactctg cccggaatat 4921 ttaagacaaa ggatggg [gap 497 bp] Expand Ns 5435 ccactt cacagatccc tcaagtatag 5461 cagcaagagg atacatttca acaagggttg agatgggcga ggcggctgcc atcttcatga 5521 ccgccacgcc accaggaacc cgtgacgcat ttccggactc caactcacca attatggaca 5581 ccgaagtgga agtcccagag agagcctgga gctcaggctt tgattgggtg acggatcatt 5641 ctggaaaaac agtttggttt gttccaagcg tgaggaacgg caatgagatc gcagcttgtc 5701 tgacaaaggc tggaaaacgg gtcatacagc tcagcagaaa gacttttgag acagagttcc 5761 agaaaacaaa acatcaagag tgggactttg tcgtgacaac cgacatttca gagatgggcg 5821 ccaactttaa agctgaccgt gtcatagatt ccaggagatg cctaaagccg gtcatacttg 5881 atggcgagag agtcattctg gctggaccca tgcctgtcac acatgccagc gctgcccaga 5941 ggagggggcg cataggcagg aatcccaaca aacctggaga tgagtatctg tatggaggtg 6001 ggtgcgcaga gactgacgaa gaccatgcac actggcttga agcaagaatg ctccttgaca 6061 atatttacct ccaagatggc ctcatagcct cgctctatcg acctgaggcc gacaaagtag 6121 cagccattga gggagagttc aagcttagga cggagcaaag gaagaccttt gtggaactca 6181 tgaaaagagg agatcttcct gtttggctgg cctatcaggt tgcatctgcc ggaataactt 6241 acacagatag aagatggtgc tttgatggca cgaccaacaa caccataatg gaagacagtg 6301 tgccggcaga ggtgtggacc agacacggag agaaaagagt gctcaaaccg aggtggatgg 6361 acgccagagt ttgttcagat catgcggccc tgaagtcatt caaggagttt gccgctggga 6421 aaagaggagc ggcttttgga gtgatggaag ccctgggaac actgccagga cacatgacag 6481 agagattcca ggaagccatt gacaacctcg ctgtgctcat gcgggcagag actggaagca 6541 ggccttacaa agccgcggcg gcccaattgc cggagaccct agagaccatt atgcttttgg 6601 ggttgctggg aacagtctcg ctgggaatct ttttcgtctt gatgaggaac aagggcatag 6661 ggaagatggg ctttggaatg gtgactcttg gggccagcgc atggctcatg tggctctcgg 6721 aaattgagcc agccagaatt gcatgtgtcc tcattgttgt gttcctattg ctggtggtgc 6781 tcatacctga gccagaaaag caaagatctc cccaggacaa ccaaatggca atcatcatca 6841 tggtagcagt aggtcttctg ggcttgatca ccgccaatga actcggatgg ttggagagaa 6901 caaagagtga cctaagccat ctaatgggaa ggagagagga gggagcaacc ataggattct 6961 caatggacat tgacctgcgg ccagcctcag cttgggccat ctatgctgcc ttgacaactt 7021 tcattacccc agccgtccaa catgcagtga ccacttcata caacaactac tccttaatgg 7081 cgatggccac gcaagctgga gtgttgtttg gtatgggcaa agggatgcca ttctacgcat 7141 gggactttgg agtcccgctg ctaatgatag gttgctactc acaattaaca cccctgaccc 7201 taatagtggc catcattttg ctcgtggcgc actacatgta cttgatccca gggctgcagg 7261 cagcagctgc gcgtgctgcc cagaagagaa cggcagctgg catcatgaag aaccctgttg 7321 tggatggaat agtggtgact gacattgaca caatgacaat tgacccccaa gtggagaaaa 7381 agatgggaca ggtgctactc atagcagtag ccgtctccag cgccatactg tcgcggaccg 7441 cctgggggtg gggggaggct ggggccctga tcacagccgc aacttccact ttgtgggaag 7501 gctctccgaa caagtactgg aactcctcta cagccacttc actgtgtaac atttttaggg 7561 ggagttactt ggctggagct tctctaatct acacagtaac aagaaacgct ggcttggtca 7621 agagacgtgg gggtggaaca ggagagaccc tgggagagaa atggaaggcc cgcttgaacc 7681 agatgtcggc cctggagttc tactcctaca aaaagtcagg catcaccgag gtgtgcagag 7741 aagaggcccg ccgcgccctc aaggacggtg tggcaacggg aggccatgct gtgtcccgag 7801 gaagtgcaaa gctgagatgg ttggtggagc ggggatacct gcagccctat ggaaaggtca 7861 ttgatcttgg atgtggcaga gggggctgga gttactacgc cgccaccatc cgcaaagttc 7921 aagaagtgaa aggatacaca aaaggaggcc ctggtcatga agaacctgtg ttggtgcaaa 7981 gctatgggtg gaacatagtc cgtctcaaga gtggggtgga cgtctttcat atggcggctg 8041 agccgtgtga cacgttgctg tgtgacatag gtgagtcatc atctagtcct gaagtggaag 8101 aagcacggac gctcagagtc ctctccatgg tgggggattg gcttgaaaaa agaccaggag 8161 ccttttgtat aaaagtgttg tgcccataca ccagcactat gatggaaacc ttggagcggc 8221 tgcagcgtag gtatggggga ggactggtca gagtgccact ctcccgcaac tctacacatg 8281 agatgtactg ggtctctgga gcgaaaagca acaccataaa aagtgtgtcc accacgagcc 8341 agctcctctt ggggcgcatg gacgggccta ggaggccagt gaaatatgag gaggatgtga 8401 atctcggctc tggcacgcgg gctgtggtaa gctgcgctga agctcccaac atgaagatca 8461 ttggtaaccg cattgaaagg atccgcagtg agcacgcgga aacgtggttc tttgacgaga 8521 accacccata taggacatgg gcttaccatg gaagctatga ggcccctaca caagggtcag 8581 catcctctct agtaaacggg gttgtcaggc tcctgtcaaa accctgggat gtggtgactg 8641 gagtcacagg aatagccatg accgacacca caccgtatgg tcagcaaaga gttttcaagg 8701 aaaaagtgga cactagggtg ccagaccccc aagaaggcac tcgtcaggtt atgagcatgg 8761 tctcttcctg gttgtggaaa gagctaggca aacacaaacg gccacgagtc tgcaccaaag 8821 aagagttcat caacaaggtt cgtagcaatg cagcattagg ggcaatattt gaagaggaaa 8881 aagagtggaa gactgcagtg gaagctgtga acgatccaag gttctgggct ctagtggaca 8941 aggaaagaga gcaccacctg agaggagagt gccagagttg tgtgtacaac atgatgggaa 9001 aaagagaaaa gaaacaaggg gaatttggaa aggccaaggg cagccgcgcc atctggtata 9061 tgtggctagg ggctagattt ctagagttcg aagcccttgg attcttgaac gaggatcact 9121 ggatggggag agagaactca ggaggtggtg ttgaagggct gggattacaa agactcggat 9181 atgtcctaga agagatgagt cgcataccag gaggaaggat gtatgcagat gacactgctg 9241 gctgggatac ccgcatcagc aggtttgatc tagagaatga agctctaatc accaaccaaa 9301 tggagaargg gcacagggcc ttggcattgg ccataatcaa gtacacatac caaaataaag 9361 tggtaaaggt ccttagacca gctgaaaaag ggaaaacagt tatggacatt atttcgagac 9421 aagaccaaag ggggagcgga caagttgtca cttacgctct taacacattt accaacctag 9481 tggtgcaact cattcggaat atggaggctg aggaagttct agagatgcaa gacttgtggc 9541 tgctgcggag gtcagagaaa gtgaccaact ggttgcagag caacggatgg gataggctca 9601 aacgaatggc agtcagtgga gatgattgcg ttgtgaagcc aattgatgat aggtttgcac 9661 atgccctcag gttcttgaat gatatgggaa aagttaggaa ggacacacaa gagtggaaac 9721 cctcaactgg atgggacaac tgggaagaag ttccgttttg ctcccaccac ttcaacaagc 9781 tccatctcaa ggacgggagg tccattgtgg ttccctgccg ccaccaagat gaactgattg 9841 gccgggcccg cgtctctcca ggggcgggat ggagcatccg ggagactgct tgcctagcaa 9901 aatcatatgc gcaaatgtgg cagctccttt atttccacag aagggacctc cgactgatgg 9961 ccaatgccat ttgttcatct gtgccagttg actgggttcc aactgggaga actacctggt 10021 caatccatgg aaagggagaa tggatgacca ttgaagacat gcttgtggtg tggaacagag 10081 tgtggattga ggagaacgac cacatggaag acaagacccc agttacgaaa tggacagaca 10141 ttccctattt gggaaaaagg gaagacttgt ggtgtggatc tctcataggg cacagaccgc 10201 gcaccacctg ggctgagaac attaaaaaca cagtcaacat ggtgcgcagg atcataggtk 10261 aggaagaaaa gtacatggac tacctatcca cccaagttcg ctacttgggt gaagaagggt 10321 ctacacctgg agtgctgtaa gcaccaatct taatgttgtc aggc Link to comment Share on other sites More sharing options...
niman Posted October 25, 2016 Author Report Share Posted October 25, 2016 Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KY014298.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-032-URI polyprotein gene, complete cds 8776 8776 100% 0.0 100% KY014298.1 Select seq gb|KX922705.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds 8776 8776 100% 0.0 99% KX922705.1 Select seq gb|KY014322.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-03-MOS polyprotein gene, complete cds 8771 8771 100% 0.0 99% KY014322.1 Select seq gb|KX838906.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds 8771 8771 100% 0.0 99% KX838906.2 Select seq gb|KY014299.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-04-MOS polyprotein gene, complete cds 8767 8767 100% 0.0 99% KY014299.1 Select seq gb|KX922708.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds 8767 8767 100% 0.0 99% KX922708.1 Select seq gb|KY014304.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0180-SER polyprotein gene, complete cds 8749 8749 100% 0.0 99% KY014304.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 8749 8749 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 8745 8745 100% 0.0 99% KU853012.1 Select seq gb|KY014300.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0208-SER polyprotein gene, complete cds 8744 8744 100% 0.0 99% KY014300.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 8744 8744 100% 0.0 99% KX673530.1 Select seq gb|KY014321.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0115-SER polyprotein gene, complete cds 8740 8740 100% 0.0 99% KY014321.1 Select seq dbj|LC190723.1| Zika virus genomic RNA, complete genome, strain: ZIKV/Hu/Yokohama/1/2016 8740 8740 100% 0.0 99% LC190723.1 Select seq gb|KX922707.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds 8740 8740 100% 0.0 99% KX922707.1 Select seq gb|KY014323.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-02-MOS polyprotein gene, complete cds 8735 8735 100% 0.0 99% KY014323.1 Select seq gb|KY014316.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-039-URI polyprotein gene, complete cds 8735 8735 100% 0.0 99% KY014316.1 Select seq gb|KY014295.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-010-URI polyprotein gene, complete cds 8735 8735 100% 0.0 99% KY014295.1 Select seq gb|KX922704.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds 8735 8735 100% 0.0 99% KX922704.1 Select seq gb|KX842449.2| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds 8735 8735 100% 0.0 99% KX842449.2 Select seq gb|KX838905.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds 8735 8735 100% 0.0 99% KX838905.2 Select seq gb|KX922706.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds 8733 8733 100% 0.0 99% KX922706.1 Select seq gb|KX922703.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds 8731 8731 100% 0.0 99% KX922703.1 Select seq gb|KX832731.1| Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds 8731 8731 100% 0.0 99% KX832731.1 Select seq gb|KY014314.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0436-SER polyprotein gene, complete cds 8725 8725 100% 0.0 99% KY014314.1 Select seq gb|KX838904.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds 8724 8724 100% 0.0 99% KX838904.2 Select seq gb|KY014324.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-01-MOS polyprotein gene, complete cds 8722 8722 100% 0.0 99% KY014324.1 Select seq gb|KX447518.1| Zika virus isolate 1_0117_PF polyprotein gene, partial cds 8716 8716 100% 0.0 99% KX447518.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 8716 8716 100% 0.0 99% KX280026.1 Select seq gb|KX879604.1| Zika virus isolate SN089, complete genome 8713 8713 100% 0.0 99% KX879604.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 8713 8713 100% 0.0 99% KX447510.1 Select seq gb|KX879603.1| Zika virus isolate SN062, complete genome 8707 8707 100% 0.0 99% KX879603.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 8707 8707 100% 0.0 99% KX447513.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 8707 8707 100% 0.0 99% KU509998.3 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 8707 8707 100% 0.0 99% KU926310.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 8707 8707 100% 0.0 99% KU729218.1 Select seq gb|KX811222.1| Zika virus isolate Brazil_2015_MG, complete genome 8704 8704 100% 0.0 99% KX811222.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 8704 8704 100% 0.0 99% KX197205.1 Select seq gb|KX447521.1| Zika virus isolate 1_0080_PF polyprotein gene, partial cds 8704 8704 100% 0.0 99% KX447521.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 8704 8704 100% 0.0 99% KX447512.1 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 8704 8704 100% 0.0 99% KX447509.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 8704 8704 100% 0.0 99% KX369547.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 8704 8704 100% 0.0 99% KX262887.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 8704 8704 100% 0.0 99% KU940228.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 8704 8704 100% 0.0 99% KU729217.2 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 8704 8704 100% 0.0 99% KU707826.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 8704 8704 100% 0.0 99% KU365779.1 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 8698 8698 100% 0.0 99% KJ776791.2 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 8698 8698 100% 0.0 99% KX447515.1 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 8698 8698 100% 0.0 99% KX247632.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 8698 8698 100% 0.0 99% KU365780.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 8698 8698 100% 0.0 99% KU365777.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 8698 8698 100% 0.0 99% KU321639.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 8695 8695 100% 0.0 99% KX447514.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 8695 8695 100% 0.0 99% KX447511.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 8695 8695 100% 0.0 99% KX197192.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 8695 8695 100% 0.0 99% KX051563.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 8695 8695 100% 0.0 99% KU501217.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 8695 8695 100% 0.0 99% KU501216.1 Select seq gb|KY014309.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ47D1-PLA polyprotein gene, partial cds 8693 8693 100% 0.0 99% KY014309.1 Select seq gb|KY014297.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-6864-URI polyprotein gene, complete cds 8691 8691 100% 0.0 99% KY014297.1 Select seq gb|KY014317.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ28D1-URI polyprotein gene, complete cds 8689 8689 100% 0.0 99% KY014317.1 Select seq gb|KX856011.1| Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome 8689 8689 100% 0.0 99% KX856011.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 8689 8689 100% 0.0 99% KX694534.1 Select seq gb|KX447520.1| Zika virus isolate 1_0016_PF polyprotein gene, partial cds 8689 8689 100% 0.0 99% KX447520.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 8689 8689 100% 0.0 99% KX447516.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 8689 8689 100% 0.0 99% KX446951.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 8689 8689 100% 0.0 99% KU991811.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 8689 8689 100% 0.0 99% KU926309.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 8689 8689 100% 0.0 99% KU365778.1 Select seq gb|KY014327.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME167-PLA polyprotein gene, complete cds 8686 8686 100% 0.0 99% KY014327.1 Select seq gb|KY014307.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ49D1-PLA polyprotein gene, complete cds 8686 8686 99% 0.0 99% KY014307.1 Select seq gb|KY014306.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME178-PLA polyprotein gene, complete cds 8686 8686 99% 0.0 99% KY014306.1 Select seq gb|KX806557.2| Zika virus isolate TS17-2016, complete genome 8686 8686 100% 0.0 99% KX806557.2 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 8686 8686 100% 0.0 99% KX520666.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 8686 8686 100% 0.0 99% KU758877.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 8686 8686 100% 0.0 99% KU527068.1 Select seq gb|KY014315.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME152-SER polyprotein gene, complete cds 8682 8682 100% 0.0 99% KY014315.1 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 8680 8680 100% 0.0 99% KX766029.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 8680 8680 100% 0.0 99% KX446950.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 8680 8680 100% 0.0 99% KU501215.1 Select seq gb|KY014310.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME42-SER polyprotein gene, complete cds 8679 8679 100% 0.0 99% KY014310.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 8677 8677 100% 0.0 99% KX601168.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 8677 8677 100% 0.0 99% KX377337.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 8677 8677 100% 0.0 99% KX087101.2 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 8677 8677 100% 0.0 99% KU937936.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 8677 8677 100% 0.0 99% KU955590.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 8677 8677 100% 0.0 99% KU497555.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 8677 8677 100% 0.0 99% KU312312.1 Select seq gb|KY014303.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0127-SER polyprotein gene, complete cds 8671 8671 100% 0.0 99% KY014303.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 8671 8671 100% 0.0 99% KX198135.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 8671 8671 100% 0.0 99% KX056898.1 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 8671 8671 100% 0.0 99% KU870645.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 8668 8668 100% 0.0 99% KX447517.1 Select seq gb|KY014296.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ131D1-URI polyprotein gene, complete cds 8662 8662 100% 0.0 99% KY014296.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 8662 8662 100% 0.0 99% KX156776.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 8662 8662 100% 0.0 99% KX117076.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 8661 8661 100% 0.0 99% KX766028.1 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 8659 8659 100% 0.0 99% KX253996.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 8659 8659 100% 0.0 99% KX247646.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 8659 8659 100% 0.0 99% KX185891.1 Link to comment Share on other sites More sharing options...
niman Posted October 25, 2016 Author Report Share Posted October 25, 2016 Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KY014322.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-03-MOS polyprotein gene, complete cds 8843 8843 100% 0.0 99% KY014322.1 Select seq gb|KY014298.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-032-URI polyprotein gene, complete cds 8843 8843 100% 0.0 100% KY014298.1 Select seq gb|KX922705.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds 8843 8843 100% 0.0 99% KX922705.1 Select seq gb|KX838906.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds 8843 8843 100% 0.0 99% KX838906.2 Select seq gb|KX922708.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds 8828 8828 100% 0.0 99% KX922708.1 Select seq gb|KY014299.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-04-MOS polyprotein gene, complete cds 8825 8825 100% 0.0 99% KY014299.1 Select seq gb|KY014304.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0180-SER polyprotein gene, complete cds 8801 8801 100% 0.0 99% KY014304.1 Select seq gb|KY014300.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0208-SER polyprotein gene, complete cds 8798 8798 100% 0.0 99% KY014300.1 Select seq gb|KY014295.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-010-URI polyprotein gene, complete cds 8798 8798 100% 0.0 99% KY014295.1 Select seq gb|KX842449.2| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds 8798 8798 100% 0.0 99% KX842449.2 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 8794 8794 100% 0.0 99% KU853012.1 Select seq dbj|LC190723.1| Zika virus genomic RNA, complete genome, strain: ZIKV/Hu/Yokohama/1/2016 8792 8792 100% 0.0 99% LC190723.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 8792 8792 100% 0.0 99% KX673530.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 8792 8792 100% 0.0 99% KU853013.1 Select seq gb|KY014325.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-030-URI polyprotein gene, complete cds 8789 8789 100% 0.0 99% KY014325.1 Select seq gb|KY014321.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0115-SER polyprotein gene, complete cds 8789 8789 100% 0.0 99% KY014321.1 Select seq gb|KY014314.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0436-SER polyprotein gene, complete cds 8789 8789 100% 0.0 99% KY014314.1 Select seq gb|KX922704.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds 8789 8789 100% 0.0 99% KX922704.1 Select seq gb|KX922703.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds 8789 8789 100% 0.0 99% KX922703.1 Select seq gb|KX832731.1| Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds 8789 8789 100% 0.0 99% KX832731.1 Select seq gb|KX838904.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds 8785 8785 100% 0.0 99% KX838904.2 Select seq gb|KY014324.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-01-MOS polyprotein gene, complete cds 8783 8783 100% 0.0 99% KY014324.1 Select seq gb|KY014323.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-02-MOS polyprotein gene, complete cds 8783 8783 100% 0.0 99% KY014323.1 Select seq gb|KX922706.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds 8783 8783 100% 0.0 99% KX922706.1 Select seq gb|KX838905.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds 8783 8783 100% 0.0 99% KX838905.2 Select seq gb|KX922707.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds 8774 8774 100% 0.0 99% KX922707.1 Select seq gb|KY014316.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-039-URI polyprotein gene, complete cds 8772 8772 100% 0.0 99% KY014316.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 8756 8756 100% 0.0 99% KU991811.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 8753 8753 100% 0.0 99% KU729217.2 Select seq gb|KY014303.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0127-SER polyprotein gene, complete cds 8747 8747 100% 0.0 99% KY014303.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 8747 8747 100% 0.0 99% KU647676.1 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 8744 8744 100% 0.0 99% KJ776791.2 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 8744 8744 100% 0.0 99% KX447512.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 8744 8744 100% 0.0 99% KX447510.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 8744 8744 100% 0.0 99% KX548902.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 8744 8744 100% 0.0 99% KX369547.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 8744 8744 100% 0.0 99% KX247646.1 Select seq gb|KX893855.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-2/2016, complete genome 8738 8738 100% 0.0 99% KX893855.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 8738 8738 100% 0.0 99% KU820897.5 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 8738 8738 100% 0.0 99% KX702400.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 8738 8738 100% 0.0 99% KX447511.1 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 8738 8738 100% 0.0 99% KX447509.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 8738 8738 100% 0.0 99% KX280026.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 8738 8738 100% 0.0 99% KX198135.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 8738 8738 100% 0.0 99% KX156776.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 8738 8738 100% 0.0 99% KX156774.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 8738 8738 100% 0.0 99% KX087102.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 8738 8738 100% 0.0 99% KU509998.3 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 8738 8738 100% 0.0 99% KU527068.1 Select seq gb|KX811222.1| Zika virus isolate Brazil_2015_MG, complete genome 8735 8735 100% 0.0 99% KX811222.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 8735 8735 100% 0.0 99% KX447517.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 8735 8735 100% 0.0 99% KX447516.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 8735 8735 100% 0.0 99% KX447515.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 8735 8735 100% 0.0 99% KX447514.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 8735 8735 100% 0.0 99% KX156775.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 8735 8735 100% 0.0 99% KX051563.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 8735 8735 100% 0.0 99% KU926309.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 8735 8735 100% 0.0 99% KU922960.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 8735 8735 100% 0.0 99% KU922923.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 8735 8735 100% 0.0 99% KU321639.1 Select seq gb|KY014320.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ42D1-URI polyprotein gene, complete cds 8729 8729 100% 0.0 99% KY014320.1 Select seq gb|KY014296.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ131D1-URI polyprotein gene, complete cds 8729 8729 100% 0.0 99% KY014296.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 8729 8729 100% 0.0 99% KX197205.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 8729 8729 100% 0.0 99% KX694534.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 8729 8729 100% 0.0 99% KX447513.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 8729 8729 100% 0.0 99% KX197192.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 8729 8729 100% 0.0 99% KU312312.1 Select seq gb|KY014307.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ49D1-PLA polyprotein gene, complete cds 8725 8725 100% 0.0 99% KY014307.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 8725 8725 100% 0.0 99% KX601168.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 8725 8725 100% 0.0 99% KU758877.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 8725 8725 100% 0.0 99% KX262887.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 8725 8725 100% 0.0 99% KX087101.2 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 8725 8725 100% 0.0 99% KU729218.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 8725 8725 99% 0.0 99% KU497555.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 8725 8725 100% 0.0 99% KU707826.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 8725 8725 100% 0.0 99% KU501217.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 8725 8725 100% 0.0 99% KU501215.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 8725 8725 100% 0.0 99% KU365780.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 8725 8725 100% 0.0 99% KU365779.1 Select seq gb|KY014315.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME152-SER polyprotein gene, complete cds 8724 8724 100% 0.0 99% KY014315.1 Select seq gb|KY014327.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME167-PLA polyprotein gene, complete cds 8722 8722 100% 0.0 99% KY014327.1 Select seq gb|KX879604.1| Zika virus isolate SN089, complete genome 8720 8720 100% 0.0 99% KX879604.1 Select seq gb|KX856011.1| Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome 8720 8720 100% 0.0 99% KX856011.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 8720 8720 100% 0.0 99% KX446950.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 8720 8720 100% 0.0 99% KX377337.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 8720 8720 100% 0.0 99% KU501216.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 8720 8720 100% 0.0 99% KU365777.1 Select seq gb|KY014297.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-6864-URI polyprotein gene, complete cds 8716 8716 100% 0.0 99% KY014297.1 Select seq gb|KX879603.1| Zika virus isolate SN062, complete genome 8716 8716 100% 0.0 99% KX879603.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 8716 8716 100% 0.0 99% KX520666.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 8716 8716 100% 0.0 99% KX446951.1 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 8716 8716 100% 0.0 99% KX247632.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 8716 8716 100% 0.0 99% KU937936.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 8716 8716 100% 0.0 99% KU940228.1 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 8716 8716 100% 0.0 99% KU940224.1 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 8716 8716 100% 0.0 99% KU870645.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 8716 8716 100% 0.0 99% KU926310.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 8716 8716 100% 0.0 99% KU820898.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 8716 8716 100% 0.0 99% KU365778.1 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 8707 8707 100% 0.0 99% KX766029.1 Link to comment Share on other sites More sharing options...
niman Posted October 25, 2016 Author Report Share Posted October 25, 2016 LOCUS KY014325 10598 bp RNA linear VRL 21-OCT-2016 DEFINITION Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-030-URI polyprotein gene, complete cds. ACCESSION KY014325 VERSION KY014325.1 DBLINK BioProject: PRJNA344504 BioSample: SAMN05844991 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10598) AUTHORS Baniecki,M.L., Barnes,K.G., Bosch,I., Cannons,A., Cone,M., Freije,C.A., Gehrke,L., Gladden-Young,A.D., Gnirke,A., Hogan,K., Isern,S., Kopp,E., Luo,C.Y., MacInnis,B., Matranga,C.B., Metsky,H.C., Michael,S., Park,D.J., Qu,J., Sabeti,P.C., Tan,A., Tomkins-Tinch,C.H., West,K.L., Winnicki,S., Wohl,S. and Yozwiak,N.L. TITLE Direct Submission JOURNAL Submitted (20-OCT-2016) Viral Genomics, Infectious Disease Program (Infectious Disease Initiative), Broad Institute, 75 Ames St, Cambridge, MA 02142, USA COMMENT ##Assembly-Data-START## Assembly Method :: github.com/broadinstitute/viral-ngs v. v1.11.0-119-g0edb62f-dirty Assembly Name :: USA_2016_FL-030_URI-1 Sequencing Technology :: Illumina; Swift LC ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10598 /organism="Zika virus" /mol_type="genomic RNA" /isolate="Zika virus/H.sapiens-wt/USA/2016/FL-030-URI" /isolation_source="urine" /host="Homo sapiens" /db_xref="taxon:64320" /country="USA: Dade County, FL" /collection_date="02-Aug-2016" /collected_by="Florida Department of Health, Florida, USA" 5'UTR <1..67 CDS 68..10339 /note="contains structural and nonstructural proteins" /codon_start=1 /product="polyprotein" /protein_id="AOY08546.1" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSVVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IXDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLVNGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTIEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGEEEKYMDYLST QVRYLGEEGSTPGVL" gap 1346..1528 /estimated_length=183 3'UTR 10340..>10598 ORIGIN 1 ttgaagcgaa agctagcaac agtatcaaca ggttttattt tggatttgga aacgagagtt 61 tctggtcatg aaaaacccaa aaaagaaatc cggaggattc cggattgtca atatgctaaa 121 acgcggagta gcccgtgtga gcccctttgg gggcttgaag aggctgccag ccggacttct 181 gctgggtcat gggcccatca ggatggtctt ggcgattcta gcctttttga gattcacggc 241 aatcaagcca tcactgggtc tcatcaatag atggggttca gtggggaaaa aagaggctat 301 ggaaataata aagaagttca agaaagatct ggctgccatg ctgagaataa tcaatgctag 361 gaaggagaag aagagacgag gcgcagatac tagtgtcgga attgttggcc tcctgctgac 421 cacagctatg gcagcggagg tcactagacg tgggagtgca tactacatgt acttggacag 481 aaacgatgct ggggaggcca tatctttccc aaccacattg gggatgaata agtgttatat 541 acagatcatg gatcttggac acatgtgtga tgccaccatg agctatgaat gccctatgct 601 ggatgagggg gtggaaccag atgacgtcga ttgttggtgc aacacgacgt caacttgggt 661 tgtgtacgga acctgccatc acaaaaaagg tgaagcacgg agatctagaa gagctgtgac 721 gctcccctcc cattccacta ggaagctgca aacgcggtcg caaacctggt tggaatcaag 781 agaatacaca aagcacttga ttagagtcga aaattggata ttcaggaacc ctggcttcgc 841 gttagcagca gctgccatcg cttggctttt gggaagctca acgagccaaa aagttatata 901 cttggtcatg atactgctga ttgccccggc atacagcatc aggtgcatag gagtcagcaa 961 tagggacttt gtggaaggta tgtcaggtgg gacttgggtt gatgttgtct tggaacatgg 1021 aggctgtgtc accgtaatgg cacaggacaa accgactgtc gacatagagc tggttacaac 1081 aacagtcagc aacatggcgg aggtaagatc ctactgctat gaggcatcaa tatcagacat 1141 ggcttcggac agccgctgcc caacacaagg tgaagcctac cttgacaagc aatcagacac 1201 tcaatatgtc tgcaaaagaa cgttagtgga cagaggctgg ggaaatggat gtggactttt 1261 tggcaaaggg agcctggtga catgcgctaa gtttgcatgc tccaagaaaa tgaccgggaa 1321 gagcatccag ccagagaatc tggag [gap 183 bp] Expand Ns 1529 tt ttcagatttg tattacttga ctatgaataa 1561 caagcactgg ttggttcaca aggagtggtt ccacgacatt ccattacctt ggcacgctgg 1621 ggcagacacc ggaactccac actggaacaa caaagaagca ctggtagagt tcaaggacgc 1681 acatgccaaa aggcaaactg tcgtggttct aggkagtcaa gaaggagcag ttcacacggc 1741 ccttgctgga gctctggagg ctgagatgga tggtgcaaag ggaaggctgt cctctggcca 1801 cttgaaatgt cgcctgaaaa tggataaact tagattgaag ggcgtgtcat actccttgtg 1861 taccgcagcg ttcacattca ccaagatccc ggctgaaaca ctgcacggga cagtcacagt 1921 ggaggtacag tacgcaggga cagatggacc ttgcaaggtt ccagctcaga tggcggtgga 1981 catgcaaact ctgaccccag ttgggaggtt gataaccgcc aaccccgtaa tcactgaaag 2041 cactgagaac tctaagatga tgctggaact tgatccacca tttggggact cttacattgt 2101 cataggagtc ggggagaaga agatcaccca ccactggcac aggagtggca gcaccattgg 2161 aaaagcattt gaagccactg tgagaggtgc caagagaatg gcagtcttgg gagatacagc 2221 ctgggacttt ggatcagttg gaggcgctct caactcattg ggcaagggca tccatcaaat 2281 ttttggagca gctttcaaat cattgtttgg aggaatgtcc tggttctcac aaatcctcat 2341 tggaacgttg ctgatgtggt tgggtctgaa cacaaagaat ggatctattt ccctcatgtg 2401 cttggcctta gggggagtgt tgatcttctt atccacagcc gtctctgctg atgtggggtg 2461 ctcggtggac ttctcaaaga aggagacgag atgcggtaca ggggtgttcg tctataacga 2521 cgttgaagcc tggagggaca ggtacaagta ccatcctgac tccccccgta gattggcagc 2581 agcagtcaag caagcctggg aagatggtat ctgcgggatc tcctctgttt caagaatgga 2641 aaacatcatg tggagatcag tagaagggga gctcaatgca atcctggaag agaatggagt 2701 tcaactgacg gtcgttgtgg gatctgtaaa aaaccccatg tggagaggtc cacagagatt 2761 gcccgtgcct gtgaacgagc tgccccacgg ctggaaggct tgggggaaat cgtacttcgt 2821 tagagcagca aagacaaata acagctttgt cgtggatggt gacacactga aggaatgccc 2881 actcaaacat agagcatgga acagctttct tgtggaggat catgggttcg gggtatttca 2941 cactagtgtc tggctcaagg ttagagaaga ttattcatta gagtgtgatc cagccgttat 3001 tggaacagct gttaagggaa aggaggctgt acacagtgat ctaggctact ggattgagag 3061 tgagaagaat gacacatgga ggctgaagag ggcccatctg atcgagatga aaacatgtga 3121 atggccaaag tcccacacat tgtggacaga tggaatagaa gagagtgatc tgatcatacc 3181 caagtcttta gctgggccac tcagccatca caataccaga gagggctaca ggacccaaat 3241 gaaagggcca tggcacagtg aagagcttga aattcggttt gaggaatgcc caggcactaa 3301 ggtccacgtg gaggaaacat gtggaacaag aggaccatct ctgagatcaa ccactgcaag 3361 cggaagggtg atcgaggaat ggtgctgcag ggagtgcaca atgcccccac tgtcgttccg 3421 ggctaaagat ggctgttggt atggaatgga gataaggccc aggaaagaac cagaaagcaa 3481 cttagtaagg tcagtggtga ctgcaggatc aactgatcac atggatcact tctcccttgg 3541 agtgcttgtg attctgctca tggtgcagga agggctgaag aagagaatga ccacaaagat 3601 catcataagc acatcaatgg cagtgctggt agctatgatc ctgggaggat tttcaatgag 3661 tgacctggct aagcttgcaa ttttgatggg tgccaccttc gcggaaatga acactggagg 3721 agatgtagct catctggcgc tgatagcggc attcaaagtc agaccagcgt tgctggtatc 3781 tttcatcttc agagctaatt ggacaccccg tgaaagcatg ctgctggcct tggcctcgtg 3841 tcttttgcaa actgcgatct ccgccttgga aggcgacctg atggttctca tcaatggttt 3901 tgctttggcc tggttggcaa tacgagcgat ggttgttcca cgcactgata acatcacctt 3961 ggcaatcctg gctgctctga caccactggc ccggggcaca ctgcttgtgg cgtggagagc 4021 aggccttgct acttgcgggg ggtttatgct cctctctctg aagggaaaag gcagtgtgaa 4081 gaagaactta ccatttgtca tggccctggg actaaccgct gtgaggctgg tcgaccccat 4141 caacgtggtg ggactgctgt tgctcacaag gagtgggaag cggagctggc cccctagcga 4201 agtactcaca gctgttggcc tgatatgcgc attggctgga gggttcgcca aggcagatat 4261 agagatggct gggcccatgg ccgcggtcgg tctgctaatt gtcagttacg tggtctcagg 4321 aaagagtgtg gacatgtaca ttgaaagagc aggtgacatc acatgggaaa aagatgcgga 4381 agtcactgga aacagtcccc ggctcgatgt ggcgctagat gagagtggtg atttctccct 4441 ggtggaggat gacggtcccc ccatgagaga gatcatactc aaggtggtcc tgatgaccat 4501 ctgtggcatg aacccaatag ccataccctt tgcagctgga gcgtggtacg tatacgtgaa 4561 gactggaaaa aggagtggtg ctctatggga tgtgcctgct cccaaggaag taaaaaaggg 4621 ggagaccaca gatggagtgt acagagtaat gactcgtaga ctgctaggtt caacacaagt 4681 tggagtggga gttatgcaag agggggtctt tcacactatg tggcacgtca caaaaggatc 4741 cgcgctgaga agcggtgaag ggagacttga tccatactgg ggagatgtca agcaggatct 4801 ggtgtcatac tgtggtccat ggaagctaga tgccgcctgg gacgggcaca gcgaggtgca 4861 gctcttggcc gtgccccccg gagagagagc gaggaacatc cagactctgc ccggaatatt 4921 taagacaaag gatggggaca ttggagcggt tgcgctggat tacccagcag gaacttcagg 4981 atccccaatc ctagacaagt gtgggagagt gataggactt tatggcaatg gggtcgtgat 5041 caaaaatggg agttatgtta gtgccatcac ccaagggagg agggaggaag agactcctgt 5101 tgagtgcttc gagccttcga tgctgaagaa gaagcagcta actgtcttag acttgcatcc 5161 tggagctgga aaaaccagga gagttcttcc tgaaatagtc cgtgaagcta taaaaacaag 5221 actccgtact gtgatcttag ctccaaccag ggttgtcgct gctgaaatgg aggaagccct 5281 tagagggctt ccagtgcgtt atatgacaac agcagtcaat gtcacccatt ctggaacaga 5341 aatcgtcgac ttaatgtgcc atgccacctt cacttcacgt ctactacagc caatcagagt 5401 ccccaactat aatctgtata ttrtggatga ggcccacttc acagatccct caagtatagc 5461 agcaagagga tacatttcaa caagggttga gatgggcgag gcggctgcca tcttcatgac 5521 cgccacgcca ccaggaaccc gtgacgcatt tccggactcc aactcaccaa ttatggacac 5581 cgaagtggaa gtcccagaga gagcctggag ctcaggcttt gattgggtga cggatcattc 5641 tggaaaaaca gtttggtttg ttccaagcgt gaggaacggc aatgagatcg cagcttgtct 5701 gacaaaggct ggaaaacggg tcatacagct cagcagaaag acttttgaga cagagttcca 5761 gaaaacaaaa catcaagagt gggactttgt cgtgacaacc gacatttcag agatgggcgc 5821 caactttaaa gctgaccgtg tcatagattc caggagatgc ctaaagccgg tcatacttga 5881 tggcgagaga gtcattctgg ctggacccat gcctgtcaca catgccagcg ctgcccagag 5941 gagggggcgc ataggcagga atcccaacaa acctggagat gagtatctgt atggaggtgg 6001 gtgcgcagag actgacgaag accatgcaca ctggcttgaa gcaagaatgc tccttgacaa 6061 tatttacctc caagatggcc tcatagcctc gctctatcga cctgaggccg acaaagtagc 6121 agccattgag ggagagttca agcttaggac ggagcaaagg aagacctttg tggaactcat 6181 gaaaagagga gatcttcctg tttggctggc ctatcaggtt gcatctgccg gaataactta 6241 cacagataga agatggtgct ttgatggcac gaccaacaac accataatgg aagacagtgt 6301 gccggcagag gtgtggacca gacacggaga gaaaagagtg ctcaaaccga ggtggatgga 6361 cgccagagtt tgttcagatc atgcggccct gaagtcattc aaggagtttg ccgctgggaa 6421 aagaggagcg gcttttggag tgatggaagc cctgggaaca ctgccaggac acatgacaga 6481 gagattccag gaagccattg acaacctcgc tgtgctcatg cgggcagaga ctggaagcag 6541 gccttacaaa gccgcggcgg cccaattgcc ggagacccta gagaccatta tgcttttggg 6601 gttgctggga acagtctcgc tgggaatctt tttcgtcttg atgaggaaca agggcatagg 6661 gaagatgggc tttggaatgg tgactcttgg ggccagcgca tggctcatgt ggctctcgga 6721 aattgagcca gccagaattg catgtgtcct cattgttgtg ttcctattgc tggtggtgct 6781 catacctgag ccagaaaagc aaagatctcc ccaggacaac caaatggcaa tcatcatcat 6841 ggtagcagta ggtcttctag gcttgatcac cgccaatgaa ctcggatggt tggagagaac 6901 aaagagtgac ctaagccatc taatgggaag gagagaggag ggagcaacca taggattctc 6961 aatggacatt gacctgcggc cagcctcagc ttgggccatc tatgctgcct tgacaacttt 7021 cattacccca gccgtccaac atgcagtgac cacttcatac aacaactact ccttaatggc 7081 gatggccacg caagctggag tgttgtttgg tatgggcaaa gggatgccat tctacgcatg 7141 ggactttgga gtcccgctgc taatgatagg ttgctactca caattgacac ccctgaccct 7201 aatagtggcc atcattttgc tcgtggcgca ctacatgtac ttgatcccag ggctgcaggc 7261 agcagctgcg cgtgctgccc agaagagaac ggcagctggc atcatgaaga accctgttgt 7321 ggatggaata gtggtgactg acattgacac aatgacaatt gacccccaag tggagaaaaa 7381 gatgggacag gtgctactca tagcagtagc cgtctccagc gccatactgt cgcggaccgc 7441 ctgggggtgg ggggaggctg gggccctgat cacagccgca acttccactt tgtgggaagg 7501 ctctccgaac aagtactgga actcctctac agccacttca ctgtgtaaca tttttagggg 7561 aagttacttg gctggagctt ctctaatcta cacagtaaca agaaacgctg gcttggtcaa 7621 gagacgtggg ggtggaacag gagagaccct gggagagaaa tggaaggccc gcttgaacca 7681 gatgtcggcc ctggagttct actcctacaa aaagtcaggc atcaccgagg tgtgcagaga 7741 agaggcccgc cgcgccctca aggacggtgt ggcaacggga ggccatgctg tgtcccgagg 7801 aagtgcaaag ctgagatggt tggtggagcg gggatacctg cagccctatg gaaaggtcat 7861 tgatcttgga tgtggcagag ggggctggag ttactacgcc gccaccatcc gcaaagttca 7921 agaagtgaaa ggatacacaa aaggaggccc tggtcatgaa gaacccgtgt tggtgcaaag 7981 ctatgggtgg aacatagtcc gtctcaagag tggggtggac gtctttcata tggcggctga 8041 gccgtgtgac acgttgctat gtgacatagg tgagtcatca tctagtcctg aagtggaaga 8101 agcacggacg ctcagagtcc tctccatggt gggggattgg cttgaaaaaa gaccaggagc 8161 cttttgtata aaagtgttgt gcccatacac cagcactatg atggaaaccc tggagcgact 8221 gcagcgtagg tatgggggag gactggtcag agtgccactc tcccgcaact ctacacatga 8281 gatgtactgg gtctctggag cgaaaagcaa caccataaaa agtgtgtcca ccacgagcca 8341 gctcctcttg gggcgcatgg acgggcctag gaggccagtg aaatatgagg aggatgtgaa 8401 tctcggctct ggcacgcggg ctgtggtaag ctgcgctgaa gctcccaaca tgaagatcat 8461 tggtaaccgc attgaaagga tccgcagtga gcacgcggaa acgtggttct ttgacgagaa 8521 ccacccatat aggacatggg cttaccatgg aagctatgag gcccccacac aagggtcagc 8581 atcctctcta gtaaacgggg ttgtcaggct cctgtcaaaa ccctgggatg tggtgactgg 8641 agtcacagga atagccatga ccgacaccac accgtatggt cagcaaagag ttttcaagga 8701 aaaagtggac actagggtgc cagaccccca agaaggcact cgtcaggtta tgagcatggt 8761 ctcttcctgg ttgtggaaag agctaggcaa acacaaacgg ccacgagtct gtaccaaaga 8821 agagttcatc aacaaggttc gtagcaatgc agcattaggg gcaatatttg aagaggaaaa 8881 agagtggaag actgcagtgg aagctgtgaa cgatccaagg ttctgggctc tagtggacaa 8941 ggaaagagag caccacctga gaggagagtg ccagagttgt gtgtacaaca tgatgggaaa 9001 aagagaaaag aaacaagggg aatttggaaa ggccaagggc agccgcgcca tctggtatat 9061 gtggctaggg gctagatttc tagagttcga agcccttgga ttcttgaacg aggatcactg 9121 gatggggaga gagaactcag gaggtggtgt tgaagggctg ggattacaaa gactcggata 9181 tgtcctagaa gagatgagtc gcataccagg aggaaggatg tatgcagatg acactgctgg 9241 ctgggatacc cgcatcagca ggtttgatct agagaatgaa gctctaatca ccaaccaaat 9301 ggagaaaggg cacagggcct tggcattggc cataatcaag tacacatacc aaaacaaagt 9361 ggtaaaggtc cttagaccag ctgaaaaagg gaaaacagtt atggacatta tttcgagaca 9421 agaccaaagg gggagcggac aagttgtcac ttacgctctt aacacattta ccaacctagt 9481 ggtgcaactc attcggaata tggaggctga ggaagttcta gagatgcaag acttgtggct 9541 gctgcggagg tcagagaaag tgaccaactg gttgcagagc aacggatggg ataggctcaa 9601 acgaatggca gtcagtggag atgattgcgt tgtgaagcca attgatgata ggtttgcaca 9661 tgccctcagg ttcttgaatg atatgggaaa agttaggaag gacacacaag agtggaaacc 9721 ctcaactgga tgggacaact gggaagaagt tccgttttgc tcccaccact tcaacaagct 9781 ccatctcaag gatgggaggt ccattgtggt tccctgccgc caccaagatg aactgattgg 9841 ccgggcccgc gtctctccag gggcgggatg gagcatccgg gagactgctt gcctagcaaa 9901 atcatatgcg caaatgtggc agctccttta tttccacaga agggacctcc gactgatggc 9961 caatgccatt tgttcatctg tgccagttga ctgggttcca actgggagaa ctacctggtc 10021 aatccatgga aagggagaat ggatgaccat tgaagacatg cttgtggtgt ggaacagagt 10081 gtggattgag gagaacgacc acatggaaga caagacccca gttacgaaat ggacagacat 10141 tccctatttg ggaaaaaggg aagacttgtg gtgtggatct ctcatagggc acagaccgcg 10201 caccacctgg gctgagaaca ttaaaaacac agtcaacatg gtgcgcagga tcataggtga 10261 ggaagaaaag tacatggact acctatccac ccaagtccgc tacttgggtg aagaagggtc 10321 tacacctgga gtgctgtaag caccaatctt aatgttgtca ggcctgctag tcagccacag 10381 cttggggaaa gctgtgcagc ctgtgacccc cccaggagaa gctgggaaac caagcctata 10441 gtcaggccga gaacgccatg gcacggaaga agccatgctg cctgtgagcc cctcagagga 10501 cactgagtca aaaaacccca cgcgcttgga ggcgcaggat gggaaaagaa ggtggcgacc 10561 ttccccaccc ttcaatctgg ggcctgaact ggagatca Link to comment Share on other sites More sharing options...
niman Posted October 25, 2016 Author Report Share Posted October 25, 2016 Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KY014325.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-030-URI polyprotein gene, complete cds 2305 2305 100% 0.0 100% KY014325.1 Select seq gb|KY014323.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-02-MOS polyprotein gene, complete cds 2305 2305 100% 0.0 100% KY014323.1 Select seq gb|KY014295.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-010-URI polyprotein gene, complete cds 2305 2305 100% 0.0 100% KY014295.1 Select seq gb|KX922706.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds 2305 2305 100% 0.0 100% KX922706.1 Select seq gb|KX922704.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds 2305 2305 100% 0.0 100% KX922704.1 Select seq gb|KX922703.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds 2305 2305 100% 0.0 100% KX922703.1 Select seq gb|KX842449.2| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds 2305 2305 100% 0.0 100% KX842449.2 Select seq gb|KX838905.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds 2305 2305 100% 0.0 100% KX838905.2 Select seq gb|KY014324.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-01-MOS polyprotein gene, complete cds 2300 2300 100% 0.0 99% KY014324.1 Select seq gb|KX838904.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds 2300 2300 100% 0.0 99% KX838904.2 Select seq gb|KX832731.1| Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds 2300 2300 100% 0.0 99% KX832731.1 Select seq gb|KY014322.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-03-MOS polyprotein gene, complete cds 2291 2291 100% 0.0 99% KY014322.1 Select seq gb|KY014321.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0115-SER polyprotein gene, complete cds 2291 2291 100% 0.0 99% KY014321.1 Select seq gb|KY014314.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0436-SER polyprotein gene, complete cds 2291 2291 100% 0.0 99% KY014314.1 Select seq gb|KY014304.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0180-SER polyprotein gene, complete cds 2291 2291 100% 0.0 99% KY014304.1 Select seq gb|KY014299.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-04-MOS polyprotein gene, complete cds 2291 2291 100% 0.0 99% KY014299.1 Select seq gb|KY014298.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-032-URI polyprotein gene, complete cds 2291 2291 100% 0.0 99% KY014298.1 Select seq dbj|LC190723.1| Zika virus genomic RNA, complete genome, strain: ZIKV/Hu/Yokohama/1/2016 2291 2291 100% 0.0 99% LC190723.1 Select seq gb|KX922708.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds 2291 2291 100% 0.0 99% KX922708.1 Select seq gb|KX922707.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds 2291 2291 100% 0.0 99% KX922707.1 Select seq gb|KX922705.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds 2291 2291 100% 0.0 99% KX922705.1 Select seq gb|KX838906.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds 2291 2291 100% 0.0 99% KX838906.2 Select seq gb|KU758869.1| Zika virus isolate 05211 polyprotein gene, partial cds 2291 2291 100% 0.0 99% KU758869.1 Select seq gb|KU758868.1| Zika virus isolate 27229 polyprotein gene, partial cds 2291 2291 100% 0.0 99% KU758868.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 2291 2291 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 2291 2291 100% 0.0 99% KU853012.1 Select seq gb|KY014300.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0208-SER polyprotein gene, complete cds 2287 2287 100% 0.0 99% KY014300.1 Select seq gb|KY014297.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-6864-URI polyprotein gene, complete cds 2287 2287 100% 0.0 99% KY014297.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 2287 2287 100% 0.0 99% KX197205.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 2287 2287 100% 0.0 99% KX694534.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 2287 2287 100% 0.0 99% KX673530.1 Select seq gb|KX447519.1| Zika virus isolate 1_0199_PF polyprotein gene, partial cds 2287 2287 100% 0.0 99% KX447519.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 2287 2287 100% 0.0 99% KX447513.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 2287 2287 100% 0.0 99% KX447511.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 2287 2287 100% 0.0 99% KU758877.1 Select seq gb|KU758874.1| Zika virus isolate 20114 polyprotein gene, partial cds 2287 2287 100% 0.0 99% KU758874.1 Select seq gb|KU758871.1| Zika virus isolate 17170 polyprotein gene, partial cds 2287 2287 100% 0.0 99% KU758871.1 Select seq gb|KU758870.1| Zika virus isolate 17160 polyprotein gene, partial cds 2287 2287 100% 0.0 99% KU758870.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 2287 2287 100% 0.0 99% KX262887.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 2287 2287 100% 0.0 99% KU937936.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 2287 2287 100% 0.0 99% KX051563.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 2287 2287 100% 0.0 99% KU940228.1 Select seq gb|KU312314.1| Zika virus isolate Z1106031 polyprotein gene, partial cds 2287 2287 100% 0.0 99% KU312314.1 Select seq gb|KY014316.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-039-URI polyprotein gene, complete cds 2286 2286 100% 0.0 99% KY014316.1 Select seq gb|KY014327.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME167-PLA polyprotein gene, complete cds 2282 2282 100% 0.0 99% KY014327.1 Select seq gb|KY014315.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME152-SER polyprotein gene, complete cds 2282 2282 100% 0.0 99% KY014315.1 Select seq gb|KY014312.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME58-PLA polyprotein gene, complete cds 2282 2282 100% 0.0 99% KY014312.1 Select seq gb|KY014306.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME178-PLA polyprotein gene, complete cds 2282 2282 100% 0.0 99% KY014306.1 Select seq gb|KY014301.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ107D1-URI polyprotein gene, complete cds 2282 2282 100% 0.0 99% KY014301.1 Select seq gb|KX879604.1| Zika virus isolate SN089, complete genome 2282 2282 100% 0.0 99% KX879604.1 Select seq gb|KX879603.1| Zika virus isolate SN062, complete genome 2282 2282 100% 0.0 99% KX879603.1 Select seq gb|KX856011.1| Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome 2282 2282 100% 0.0 99% KX856011.1 Select seq gb|KX447521.1| Zika virus isolate 1_0080_PF polyprotein gene, partial cds 2282 2282 100% 0.0 99% KX447521.1 Select seq gb|KX447520.1| Zika virus isolate 1_0016_PF polyprotein gene, partial cds 2282 2282 100% 0.0 99% KX447520.1 Select seq gb|KX447518.1| Zika virus isolate 1_0117_PF polyprotein gene, partial cds 2282 2282 100% 0.0 99% KX447518.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 2282 2282 100% 0.0 99% KX447512.1 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 2282 2282 100% 0.0 99% KX447509.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 2282 2282 100% 0.0 99% KX520666.1 Select seq gb|KU758876.1| Zika virus isolate 21068 polyprotein gene, partial cds 2282 2282 100% 0.0 99% KU758876.1 Select seq gb|KU758875.1| Zika virus isolate 15042 polyprotein gene, partial cds 2282 2282 100% 0.0 99% KU758875.1 Select seq gb|KU758873.1| Zika virus isolate 18246 polyprotein gene, partial cds 2282 2282 100% 0.0 99% KU758873.1 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 2282 2282 100% 0.0 99% KX247632.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 2282 2282 100% 0.0 99% KU991811.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 2282 2282 100% 0.0 99% KU926309.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 2282 2282 100% 0.0 99% KU707826.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 2282 2282 100% 0.0 99% KU527068.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 2282 2282 100% 0.0 99% KU501217.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 2282 2282 100% 0.0 99% KU501216.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 2282 2282 100% 0.0 99% KU365779.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 2282 2282 100% 0.0 99% KU365778.1 Select seq gb|KY014310.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME42-SER polyprotein gene, complete cds 2280 2280 100% 0.0 99% KY014310.1 Select seq gb|KY014317.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ28D1-URI polyprotein gene, complete cds 2278 2278 100% 0.0 99% KY014317.1 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 2278 2278 100% 0.0 99% KJ776791.2 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 2278 2278 100% 0.0 99% KX766028.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 2278 2278 100% 0.0 99% KX447515.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 2278 2278 100% 0.0 99% KX447514.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 2278 2278 100% 0.0 99% KX447510.1 Select seq gb|KX576684.1| Zika virus vector pZIKV-ICD, complete sequence 2278 2278 100% 0.0 99% KX576684.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 2278 2278 100% 0.0 99% KX369547.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 2278 2278 100% 0.0 99% KX446951.1 Select seq gb|KU758872.1| Zika virus isolate 01170 polyprotein gene, partial cds 2278 2278 100% 0.0 99% KU758872.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 2278 2278 100% 0.0 99% KX280026.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 2278 2278 100% 0.0 99% KX056898.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 2278 2278 100% 0.0 99% KU509998.3 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 2278 2278 100% 0.0 99% KU955590.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 2278 2278 100% 0.0 99% KU926310.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 2278 2278 100% 0.0 99% KU729218.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 2278 2278 100% 0.0 99% KU365780.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 2278 2278 100% 0.0 99% KU365777.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 2278 2278 100% 0.0 99% KU312312.1 Select seq gb|KY014307.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ49D1-PLA polyprotein gene, complete cds 2277 2277 100% 0.0 99% KY014307.1 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 2273 2273 100% 0.0 99% KX766029.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 2273 2273 100% 0.0 99% KX447516.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 2273 2273 100% 0.0 99% KX601168.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 2273 2273 100% 0.0 99% KX446950.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 2273 2273 100% 0.0 99% KX377337.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 2273 2273 100% 0.0 99% KX087101.2 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 2273 2273 100% 0.0 99% KU729217.2 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 2273 2273 100% 0.0 99% KU497555.1 Select seq gb|KY014309.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ47D1-PLA polyprotein gene, partial cds 2271 2271 100% 0.0 99% KY014309.1 Link to comment Share on other sites More sharing options...
niman Posted October 25, 2016 Author Report Share Posted October 25, 2016 Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KY014325.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-030-URI polyprotein gene, complete cds 15885 15885 100% 0.0 100% KY014325.1 Select seq gb|KX922704.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds 15885 15885 100% 0.0 99% KX922704.1 Select seq gb|KY014295.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-010-URI polyprotein gene, complete cds 15867 15867 100% 0.0 99% KY014295.1 Select seq gb|KX842449.2| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds 15867 15867 100% 0.0 99% KX842449.2 Select seq gb|KX832731.1| Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds 15858 15858 100% 0.0 99% KX832731.1 Select seq gb|KY014323.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-02-MOS polyprotein gene, complete cds 15852 15852 100% 0.0 99% KY014323.1 Select seq gb|KX922703.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds 15852 15852 100% 0.0 99% KX922703.1 Select seq gb|KX838905.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds 15852 15852 100% 0.0 99% KX838905.2 Select seq gb|KX922706.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds 15851 15851 100% 0.0 99% KX922706.1 Select seq gb|KX838904.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds 15847 15847 100% 0.0 99% KX838904.2 Select seq gb|KY014324.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-01-MOS polyprotein gene, complete cds 15843 15843 100% 0.0 99% KY014324.1 Select seq gb|KY014300.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0208-SER polyprotein gene, complete cds 15825 15825 100% 0.0 99% KY014300.1 Select seq gb|KY014304.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0180-SER polyprotein gene, complete cds 15822 15822 100% 0.0 99% KY014304.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 15822 15822 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 15820 15820 100% 0.0 99% KU853012.1 Select seq gb|KY014321.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0115-SER polyprotein gene, complete cds 15813 15813 100% 0.0 99% KY014321.1 Select seq dbj|LC190723.1| Zika virus genomic RNA, complete genome, strain: ZIKV/Hu/Yokohama/1/2016 15813 15813 100% 0.0 99% LC190723.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 15798 15798 100% 0.0 99% KX673530.1 Select seq gb|KY014314.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0436-SER polyprotein gene, complete cds 15795 15795 100% 0.0 99% KY014314.1 Select seq gb|KX922707.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds 15795 15795 100% 0.0 99% KX922707.1 Select seq gb|KY014316.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-039-URI polyprotein gene, complete cds 15791 15791 100% 0.0 99% KY014316.1 Select seq gb|KY014322.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-03-MOS polyprotein gene, complete cds 15789 15789 100% 0.0 99% KY014322.1 Select seq gb|KX838906.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds 15789 15789 100% 0.0 99% KX838906.2 Select seq gb|KX922705.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds 15778 15778 100% 0.0 99% KX922705.1 Select seq gb|KX922708.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds 15771 15771 100% 0.0 99% KX922708.1 Select seq gb|KY014299.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-04-MOS polyprotein gene, complete cds 15768 15768 100% 0.0 99% KY014299.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 15741 15741 100% 0.0 99% KX447510.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 15735 15735 100% 0.0 99% KX280026.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 15732 15732 100% 0.0 99% KX369547.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 15732 15732 100% 0.0 99% KU509998.3 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 15732 15732 100% 0.0 99% KU729217.2 Select seq gb|KX811222.1| Zika virus isolate Brazil_2015_MG, complete genome 15726 15726 100% 0.0 99% KX811222.1 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 15726 15726 100% 0.0 99% KJ776791.2 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 15726 15726 100% 0.0 99% KX447512.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 15726 15726 100% 0.0 99% KU321639.1 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 15723 15723 100% 0.0 99% KX447509.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 15723 15723 100% 0.0 99% KU991811.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 15717 15717 100% 0.0 99% KX447515.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 15717 15717 100% 0.0 99% KX198135.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 15714 15714 100% 0.0 99% KX447516.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 15714 15714 100% 0.0 99% KX447514.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 15714 15714 100% 0.0 99% KX447513.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 15714 15714 100% 0.0 99% KX447511.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 15714 15714 100% 0.0 99% KX197192.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 15714 15714 100% 0.0 99% KU707826.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 15714 15714 100% 0.0 99% KU365779.1 Select seq gb|KX879604.1| Zika virus isolate SN089, complete genome 15708 15708 100% 0.0 99% KX879604.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 15708 15708 100% 0.0 99% KX197205.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 15708 15708 100% 0.0 99% KU729218.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 15708 15708 100% 0.0 99% KU647676.1 Select seq gb|KY014303.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0127-SER polyprotein gene, complete cds 15705 15705 100% 0.0 99% KY014303.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 15705 15705 100% 0.0 99% KX247646.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 15705 15705 100% 0.0 99% KX156776.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 15705 15705 100% 0.0 99% KX051563.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 15705 15705 100% 0.0 99% KU926310.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 15705 15705 100% 0.0 99% KU527068.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 15705 15705 100% 0.0 99% KU365780.1 Select seq gb|KY014320.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ42D1-URI polyprotein gene, complete cds 15699 15699 100% 0.0 99% KY014320.1 Select seq gb|KX879603.1| Zika virus isolate SN062, complete genome 15699 15699 100% 0.0 99% KX879603.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 15699 15699 100% 0.0 99% KU820897.5 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 15699 15699 100% 0.0 99% KX447517.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 15699 15699 100% 0.0 99% KX156775.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 15699 15699 100% 0.0 99% KX156774.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 15699 15699 100% 0.0 99% KX087102.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 15699 15699 100% 0.0 99% KU926309.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 15699 15699 100% 0.0 99% KU365777.1 Select seq gb|KY014296.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ131D1-URI polyprotein gene, complete cds 15696 15696 100% 0.0 99% KY014296.1 Select seq gb|KX893855.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-2/2016, complete genome 15696 15696 100% 0.0 99% KX893855.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 15696 15696 100% 0.0 99% KX702400.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 15696 15696 100% 0.0 99% KX262887.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 15692 15692 99% 0.0 99% KU497555.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 15690 15690 100% 0.0 99% KU940228.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 15690 15690 100% 0.0 99% KU922960.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 15690 15690 100% 0.0 99% KU922923.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 15690 15690 100% 0.0 99% KU501217.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 15686 15686 100% 0.0 99% KX694534.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 15686 15686 100% 0.0 99% KU758877.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 15686 15686 100% 0.0 99% KU501216.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 15686 15686 100% 0.0 99% KU312312.1 Select seq gb|KY014297.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-6864-URI polyprotein gene, complete cds 15681 15681 100% 0.0 99% KY014297.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 15681 15681 100% 0.0 99% KX548902.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 15681 15681 100% 0.0 99% KU501215.1 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 15679 15679 100% 0.0 99% KU940224.1 Select seq gb|KX806557.2| Zika virus isolate TS17-2016, complete genome 15677 15677 100% 0.0 99% KX806557.2 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 15677 15677 100% 0.0 99% KX601168.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 15677 15677 100% 0.0 99% KX520666.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 15677 15677 100% 0.0 99% KX087101.2 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 15677 15677 100% 0.0 99% KU365778.1 Select seq gb|KY014327.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME167-PLA polyprotein gene, complete cds 15674 15674 100% 0.0 99% KY014327.1 Select seq gb|KY014315.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME152-SER polyprotein gene, complete cds 15672 15672 100% 0.0 99% KY014315.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 15672 15672 100% 0.0 99% KX377337.1 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 15672 15672 100% 0.0 99% KX247632.1 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 15672 15672 100% 0.0 99% KU870645.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 15668 15668 100% 0.0 99% KX446951.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 15668 15668 100% 0.0 99% KX446950.1 Select seq gb|KX856011.1| Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome 15663 15663 100% 0.0 99% KX856011.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 15663 15663 100% 0.0 99% KU937936.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 15663 15663 100% 0.0 99% KU820898.1 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 15654 15654 100% 0.0 99% KX766029.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 15654 15654 100% 0.0 99% KU740184.2 Link to comment Share on other sites More sharing options...
niman Posted October 25, 2016 Author Report Share Posted October 25, 2016 LOCUS KY014326 10365 bp RNA linear VRL 21-OCT-2016 DEFINITION Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-038-URI polyprotein gene, complete cds. ACCESSION KY014326 VERSION KY014326.1 DBLINK BioProject: PRJNA344504 BioSample: SAMN05844993 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10365) AUTHORS Baniecki,M.L., Barnes,K.G., Bosch,I., Cannons,A., Cone,M., Freije,C.A., Gehrke,L., Gladden-Young,A.D., Gnirke,A., Hogan,K., Isern,S., Kopp,E., Luo,C.Y., MacInnis,B., Matranga,C.B., Metsky,H.C., Michael,S., Park,D.J., Qu,J., Sabeti,P.C., Tan,A., Tomkins-Tinch,C.H., West,K.L., Winnicki,S., Wohl,S. and Yozwiak,N.L. TITLE Direct Submission JOURNAL Submitted (20-OCT-2016) Viral Genomics, Infectious Disease Program (Infectious Disease Initiative), Broad Institute, 75 Ames St, Cambridge, MA 02142, USA COMMENT ##Assembly-Data-START## Assembly Method :: github.com/broadinstitute/viral-ngs v. v1.11.0-119-g0edb62f-dirty Assembly Name :: USA_2016_FL-038_URI-1 Sequencing Technology :: Illumina; Swift LC ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10365 /organism="Zika virus" /mol_type="genomic RNA" /isolate="Zika virus/H.sapiens-wt/USA/2016/FL-038-URI" /isolation_source="urine" /host="Homo sapiens" /db_xref="taxon:64320" /country="USA: Dade County, FL" /collection_date="05-Aug-2016" /collected_by="Florida Department of Health, Florida, USA" 5'UTR <1..69 CDS 70..10341 /note="contains structural and nonstructural proteins" /codon_start=1 /product="polyprotein" /protein_id="AOY08547.1" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGXXXXXXXXXXXXXXXXXXXXXXXXNKCYIQI MDLGHMCDXXXXXXXXXXXXXXXXXXXDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSVVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLVNGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTIEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGEEEKYMDYLST QVRYLGEEGSTPGVL" gap 4939..5434 /estimated_length=496 gap 7942..8139 /estimated_length=198 gap 9160..9940 /estimated_length=781 3'UTR 10342..>10365 ORIGIN 1 gtttgaagcg aaagctagca acagtatcaa caggttttat tttggatttg gaaacgagag 61 tttctggtca tgaaaaaccc aaaaaagaaa tccggaggat tccggattgt caatatgcta 121 aaacgcggag tagcccgtgt gagccccttt gggggcttga agaggctgcc agccggactt 181 ctgctgggtc atgggcccat caggatggtc ttggcgattc tagccttttt gagattcacg 241 gcaatcaagc catcactggg tctcatcaat agatggggtt cagtggggaa aaaagaggct 301 atggaaataa taaagaagtt caagaaagat ctggctgcca tgctgagaat aatcaatgct 361 aggaaggaga agaagagacg aggcgcagat actagtgtcg gaattgttgg cctcctgctg 421 accacagcta tggcagcgga ggtcactaga cgtgggannn nnnnnnnnnn nnnnnnnnnn 481 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnaa taagtgttat 541 atacagatca tggatcttgg acacatgtgt gatnnnnnnn nnnnnnnnnn nnnnnnnnnn 601 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnc gattgttggt gcaacacgac gtcaacttgg 661 gttgtgtacg gaacctgcca tcacaaaaaa ggtgaagcac ggagatctag aagagctgtg 721 acgctcccct cccattccac taggaagctg caaacgcggt cgcaaacctg gttggaatca 781 agagaataca caaagcactt gattagagtc gaaaattgga tattcaggaa ccctggcttc 841 gcgttagcag cagctgccat cgcttggctt ttgggaagct caacgagcca aaaagttata 901 tacttggtca tgatactgct gattgccccg gcatacagca tcaggtgcat aggagtcagc 961 aatagggact ttgtggaagg tatgtcaggt gggacttggg ttgatgttgt cttggaacat 1021 ggaggctgtg tcaccgtaat ggcacaggac aaaccgactg tcgacataga gctggttaca 1081 acaacagtca gcaacatggc ggaggtaaga tcctactgct atgaggcatc aatatcagac 1141 atggcttcgg acagccgctg cccaacacaa ggtgaagcct accttgacaa gcaatcagac 1201 actcaatatg tctgcaaaag aacgttagtg gacagaggct ggggaaatgg atgtggactt 1261 tttggcaaag ggagcctggt gacatgcgct aagtttgcat gctccaagaa aatgaccggg 1321 aagagcatcc agccagagaa tctggagtac cggataatgc tgtcagttca tggctcccag 1381 cacagtggga tgatcgttaa tgacacagga catgaaactg atgagaatag agcgaaggtt 1441 gagataacgc ccaattcacc aagagccgaa gccaccctgg ggggttttgg aagcctagga 1501 ctggattgtg aaccgaggac aggccttgac ttttcagatt tgtattactt gactatgaat 1561 aacaagcact ggttggttca caaggagtgg ttccacgaca ttccattacc ttggcacgct 1621 ggggcagaca ccggaactcc acactggaac aacaaagaag cactggtaga gttcaaggac 1681 gcacatgcca aaaggcaaac tgtcgtggtt ctagggagtc aagaaggagc agttcacacg 1741 gcccttgctg gagctctgga ggctgagatg gatggtgcaa agggaaggct gtcctctggc 1801 cacttgaaat gtcgcctgaa aatggataaa cttagattga agggcgtgtc atactccttg 1861 tgtaccgcag cgttcacatt caccaagatc ccggctgaaa cactgcacgg gacagtcaca 1921 gtggaggtac agtacgcagg gacagatgga ccttgcaagg ttccagctca gatggcggtg 1981 gacatgcaaa ctctgacccc agttgggagg ttgataaccg ccaaccccgt aatcactgaa 2041 agcactgaga actctaagat gatgctggaa cttgatccac catttgggga ctcttacatt 2101 gtcataggag tcggggagaa gaagatcacc caccactggc acaggagtgg cagcaccatt 2161 ggaaaagcat ttgaagccac tgtgagaggt gccaagagaa tggcagtctt gggagataca 2221 gcctgggact ttggatcagt tggaggcgct ctcaactcat tgggcaaggg catccatcaa 2281 atttttggag cagctttcaa atcattgttt ggaggaatgt cctggttctc acaaatcctc 2341 attggaacgt tgctgatgtg gttgggtctg aacacaaaga atggatctat ttccctcatg 2401 tgcttggcct tagggggagt gttgatcttc ttatccacag ccgtctctgc tgatgtgggg 2461 tgctcggtgg acttctcaaa gaaggagacg agatgcggta caggggtgtt cgtctataac 2521 gacgttgaag cctggaggga caggtacaag taccatcctg actccccccg tagattggca 2581 gcagcagtca agcaagcctg ggaagatggt atctgcggga tctcctctgt ttcaagaatg 2641 gaaaacatca tgtggagatc agtagaaggg gagctcaatg caatcctgga agagaatgga 2701 gttcaactga cggtcgttgt gggatctgta aaaaacccca tgtggagagg tccacagaga 2761 ttgcccgtgc ctgtgaacga gctgccccac ggctggaagg cttgggggaa atcgtacttc 2821 gttagagcag caaagacaaa taacagcttt gtcgtggatg gtgacacact gaaggaatgc 2881 ccactcaaac atagagcatg gaacagcttt cttgtggagg atcatgggtt cggggtattt 2941 cacactagtg tctggctcaa ggttagagaa gattattcat tagagtgtga tccagccgtt 3001 attggaacag ctgttaaggg aaaggaggct gtacacagtg atctaggcta ctggattgag 3061 agtgagaaga atgacacatg gaggctgaag agggcccatc tgatcgagat gaaaacatgt 3121 gaatggccaa agtcccacac attgtggaca gatggaatag aagagagtga tctgatcata 3181 cccaagtctt tagctgggcc actcagccat cacaatacca gagagggcta caggacccaa 3241 atgaaagggc catggcacag tgaagagctt gaaattcggt ttgaggaatg cccaggcact 3301 aaggtccacg tggaggaaac atgtggaaca agaggaccat ctctgagatc aaccactgca 3361 agcggaaggg tgatcgagga atggtgctgc agggagtgca caatgccccc actgtcgttc 3421 cgggctaaag atggctgttg gtatggaatg gagataaggc ccaggaaaga accagaaagc 3481 aacttagtaa ggtcagtggt gactgcagga tcaactgatc acatggatca cttctccctt 3541 ggagtgcttg tgattctgct catggtgcag gaagggctga agaagagaat gaccacaaag 3601 atcatcataa gcacatcaat ggcagtgctg gtagctatga tcctgggagg attttcaatg 3661 agtgacctgg ctaagcttgc aattttgatg ggtgccacct tcgcggaaat gaacactgga 3721 ggagatgtag ctcatctggc gctgatagcg gcattcaaag tcagaccagc gttgctggta 3781 tctttcatct tcagagctaa ttggacaccc cgtgaaagca tgctgctggc cttggcctcg 3841 tgtcttttgc aaactgcgat ctccgccttg gaaggcgacc tgatggttct catcaatggt 3901 tttgctttgg cctggttggc aatacgagcg atggttgttc cacgcactga taacatcacc 3961 ttggcaatcc tggctgctct gacaccactg gcccggggca cactgcttgt ggcgtggaga 4021 gcaggccttg ctacttgcgg ggggtttatg ctcctctctc tgaagggaaa aggcagtgtg 4081 aagaagaact taccatttgt catggccctg ggactaaccg ctgtgaggct ggtcgacccc 4141 atcaacgtgg tgggactgct gttgctcaca aggagtggga agcggagctg gccccctagc 4201 gaagtactca cagctgttgg cctgatatgc gcattggctg gagggttcgc caaggcagat 4261 atagagatgg ctgggcccat ggccgcggtc ggtctgctaa ttgtcagtta cgtggtctca 4321 ggaaagagtg tggacatgta cattgaaaga gcaggtgaca tcacatggga aaaagatgcg 4381 gaagtcactg gaaacagtcc ccggctcgat gtggcgctag atgagagtgg tgatttctcc 4441 ctggtggagg atgacggtcc ccccatgaga gagatcatac tcaaggtggt cctgatgacc 4501 atctgtggca tgaacccaat agccataccc tttgcagctg gagcgtggta cgtatacgtg 4561 aagactggaa aaaggagtgg tgctctatgg gatgtgcctg ctcccaagga agtaaaaaag 4621 ggggagacca cagatggagt gtacagagta atgactcgta gactgctagg ttcaacacaa 4681 gttggagtgg gagttatgca agagggggtc tttcacacta tgtggcacgt cacaaaagga 4741 tccgcgctga gaagcggtga agggagactt gatccatact ggggagatgt caagcaggat 4801 ctggtgtcat actgtggtcc atggaagcta gatgccgcct gggacgggca cagcgaggtg 4861 cagctcttgg ccgtgccccc cggagagaga gcgaggaaca tccagactct gcccggaata 4921 tttaagacaa aggatggg [gap 496 bp] Expand Ns 5435 cccact tcacagatcc ctcaagtata 5461 gcagcaagag gatacatttc aacaagggtt gagatgggcg aggcggctgc catcttcatg 5521 accgccacgc caccaggaac ccgtgacgca tttccggact ccaactcacc aattatggac 5581 accgaagtgg aagtcccaga gagagcctgg agctcaggct ttgattgggt gacggatcat 5641 tctggaaaaa cagtttggtt tgttccaagc gtgaggaacg gcaatgagat cgcagcttgt 5701 ctgacaaagg ctggaaaacg ggtcatacag ctcagcagaa agacttttga gacagagttc 5761 cagaaaacaa aacatcaaga gtgggacttt gtcgtgacaa ccgacatttc agagatgggc 5821 gccaacttta aagctgaccg tgtcatagat tccaggagat gcctaaagcc ggtcatactt 5881 gatggcgaga gagtcattct ggctggaccc atgcctgtca cacatgccag cgctgcccag 5941 aggagggggc gcataggcag gaatcccaac aaacctggag atgagtatct gtatggaggt 6001 gggtgcgcag agactgacga agaccatgca cactggcttg aagcaagaat gctccttgac 6061 aatatttacc tccaagatgg cctcatagcc tcgctctatc gacctgaggc cgacaaagta 6121 gcagccattg agggagagtt caagcttagg acggagcaaa ggaagacctt tgtggaactc 6181 atgaaaagag gagatcttcc tgtttggctg gcctatcagg ttgcatctgc cggaataact 6241 tacacagata gaagatggtg ctttgatggc acgaccaaca acaccataat ggaagacagt 6301 gtgccggcag aggtgtggac cagacacgga gagaaaagag tgctcaaacc gaggtggatg 6361 gacgccagag tttgttcaga tcatgcggcc ctgaagtcat tcaaggagtt tgccgctggg 6421 aaaagaggag cggcttttgg agtgatggaa gccctgggaa cactgccagg acacatgaca 6481 gagagattcc aggaagccat tgacaacctc gctgtgctca tgcgggcaga gactggaagc 6541 aggccttaca aagccgcggc ggcccaattg ccggagaccc tagagaccat tatgcttttg 6601 gggttgctgg gaacagtctc gctgggaatc tttttcgtct tgatgaggaa caagggcata 6661 gggaagatgg gctttggaat ggtgactctt ggggccagcg catggctcat gtggctctcg 6721 gaaattgagc cagccagaat tgcatgtgtc ctcattgttg tgttcctatt gctggtggtg 6781 ctcatacctg agccagaaaa gcaaagatct ccccaggaca accaaatggc aatcatcatc 6841 atggtagcag taggtcttct aggcttgatc accgccaatg aactcggatg gttggagaga 6901 acaaagagtg acctaagcca tctaatggga aggagagagg agggagcaac cataggattc 6961 tcaatggaca ttgacctgcg gccagcctca gcttgggcca tctatgctgc cttgacaact 7021 ttcattaccc cagccgtcca acatgcagtg accacttcat acaacaacta ctccttaatg 7081 gcgatggcca cgcaagctgg agtgttgttt ggtatgggca aagggatgcc attctacgca 7141 tgggactttg gagtcccgct gctaatgata ggttgctact cacaattaac acccctgacc 7201 ctaatagtgg ccatcatttt gctcgtggcg cactacatgt acttgatccc agggctgcag 7261 gcagcagctg cgcgtgctgc ccagaagaga acggcagctg gcatcatgaa gaaccctgtt 7321 gtggatggaa tagtggtgac tgacattgac acaatgacaa ttgaccccca agtggagaaa 7381 aagatgggac aggtgctact catagcagta gccgtctcca gcgccatact gtcgcggacc 7441 gcctgggggt ggggggaggc tggggccctg atcacagccg caacttccac tttgtgggaa 7501 ggctctccga acaagtactg gaactcctct acagccactt cactgtgtaa catttttagg 7561 ggaagttact tggctggagc ttctctaatc tacacagtaa caagaaacgc tggcttggtc 7621 aagagacgtg ggggtggaac aggagagacc ctgggagaga aatggaaggc ccgcttgaac 7681 cagatgtcgg ccctggagtt ctactcctac aaaaagtcag gcatcaccga ggtgtgcaga 7741 gaagaggccc gccgcgccct caaggacggt gtggcaacgg gaggccatgc tgtgtcccga 7801 ggaagtgcaa agctgagatg gttggtggag cggggatacc tgcagcccta tggaaaggtc 7861 attgatcttg gatgtggcag agggggctgg agttactacg ccgccaccat ccgcaaagtt 7921 caagaagtga aaggatacac a [gap 198 bp] Expand Ns 8140 t ggcttgaaaa aagaccagga 8161 gccttttgta taaaagtgtt gtgcccatac accagcacta tgatggaaac cctggagcga 8221 ctgcagcgta ggtatggggg aggactggtc agagtgccac tctcccgcaa ctctacacat 8281 gagatgtact gggtctctgg agcgaaaagc aacaccataa aaagtgtgtc caccacgagc 8341 cagctcctct tggggcgcat ggacgggcct aggaggccag tgaaatatga ggaggatgtg 8401 aatctcggct ctggcacgcg ggctgtggta agctgcgctg aagctcccaa catgaagatc 8461 attggtaacc gcattgaaag gatccgcagt gagcacgcgg aaacgtggtt ctttgacgag 8521 aaccacccat ataggacatg ggcttaccat ggaagctatg aggcccccac acaagggtca 8581 gcatcctctc tagtaaacgg ggttgtcagg ctcctgtcaa aaccctggga tgtggtgact 8641 ggagtcacag gaatagccat gaccgacacc acaccgtatg gtcagcaaag agttttcaag 8701 gaaaaagtgg acactagggt gccagacccc caagaaggca ctcgtcaggt tatgagcatg 8761 gtctcttcct ggttgtggaa agagctaggc aaacacaaac ggccacgagt ctgtaccaaa 8821 gaagagttca tcaacaaggt tcgtagcaat gcagcattag gggcaatatt tgaagaggaa 8881 aaagagtgga agactgcagt ggaagctgtg aacgatccaa ggttctgggc tctagtggac 8941 aaggaaagag agcaccacct gagaggagag tgccagagtt gtgtgtacaa catgatggga 9001 aaaagagaaa agaaacaagg ggaatttgga aaggccaagg gcagccgcgc catctggtat 9061 atgtggctag gggctagatt tctagagttc gaagcccttg gattcttgaa cgaggatcac 9121 tggatgggga gagagaactc aggaggtggt gttgaaggg [gap 781 bp] Expand Ns 9941 gaagggacct ccgactgatg 9961 gccaatgcca tttgttcatc tgtgccagtt gactgggttc caactgggag aactacctgg 10021 tcaatccatg gaaagggaga atggatgacc attgaagaca tgcttgtggt gtggaacaga 10081 gtgtggattg aggagaacga ccacatggaa gacaagaccc cagttacgaa atggacagac 10141 attccctatt tgggaaaaag ggaagacttg tggtgtggat ctctcatagg gcacagaccg 10201 cgcaccacct gggctgagaa cattaaaaac acagtcaaca tggtgcgcag gatcataggt 10261 gaggaagaaa agtacatgga ctacctatcc acccaagtcc gctacttggg tgaagaaggg 10321 tctacacctg gagtgctgta agcaccaatc ttaatgttgt caggc Link to comment Share on other sites More sharing options...
niman Posted October 25, 2016 Author Report Share Posted October 25, 2016 Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KY014326.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-038-URI polyprotein gene, complete cds 7772 8555 97% 0.0 100% KY014326.1 Select seq gb|KY014323.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-02-MOS polyprotein gene, complete cds 7772 8555 97% 0.0 100% KY014323.1 Select seq gb|KY014295.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-010-URI polyprotein gene, complete cds 7772 8555 97% 0.0 100% KY014295.1 Select seq gb|KX922704.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds 7772 8555 97% 0.0 100% KX922704.1 Select seq gb|KX842449.2| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds 7772 8555 97% 0.0 100% KX842449.2 Select seq gb|KX838905.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds 7772 8555 97% 0.0 100% KX838905.2 Select seq gb|KX922706.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds 7768 8551 97% 0.0 99% KX922706.1 Select seq gb|KX922703.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds 7766 8550 97% 0.0 99% KX922703.1 Select seq gb|KX832731.1| Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds 7766 8550 97% 0.0 99% KX832731.1 Select seq gb|KX838904.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds 7764 8548 97% 0.0 99% KX838904.2 Select seq gb|KY014324.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-01-MOS polyprotein gene, complete cds 7762 8546 97% 0.0 99% KY014324.1 Select seq gb|KY014304.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0180-SER polyprotein gene, complete cds 7744 8528 97% 0.0 99% KY014304.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 7744 8528 97% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 7741 8524 97% 0.0 99% KU853012.1 Select seq gb|KY014300.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0208-SER polyprotein gene, complete cds 7739 8522 97% 0.0 99% KY014300.1 Select seq gb|KY014321.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0115-SER polyprotein gene, complete cds 7735 8519 97% 0.0 99% KY014321.1 Select seq dbj|LC190723.1| Zika virus genomic RNA, complete genome, strain: ZIKV/Hu/Yokohama/1/2016 7735 8519 97% 0.0 99% LC190723.1 Select seq gb|KX922707.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds 7735 8519 97% 0.0 99% KX922707.1 Select seq gb|KX922705.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds 7735 8519 97% 0.0 99% KX922705.1 Select seq gb|KY014322.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-03-MOS polyprotein gene, complete cds 7730 8513 97% 0.0 99% KY014322.1 Select seq gb|KY014316.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-039-URI polyprotein gene, complete cds 7730 8513 97% 0.0 99% KY014316.1 Select seq gb|KY014298.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-032-URI polyprotein gene, complete cds 7730 8513 97% 0.0 99% KY014298.1 Select seq gb|KX838906.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds 7730 8513 97% 0.0 99% KX838906.2 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 7730 8513 97% 0.0 99% KX673530.1 Select seq gb|KY014299.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-04-MOS polyprotein gene, complete cds 7726 8510 97% 0.0 99% KY014299.1 Select seq gb|KX922708.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds 7726 8510 97% 0.0 99% KX922708.1 Select seq gb|KY014314.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0436-SER polyprotein gene, complete cds 7721 8504 97% 0.0 99% KY014314.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 7721 8495 97% 0.0 99% KX447510.1 Select seq gb|KX447518.1| Zika virus isolate 1_0117_PF polyprotein gene, partial cds 7717 8501 97% 0.0 99% KX447518.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 7717 8501 97% 0.0 99% KX280026.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 7717 8495 97% 0.0 99% KU729218.1 Select seq gb|KX879604.1| Zika virus isolate SN089, complete genome 7712 8495 97% 0.0 99% KX879604.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 7712 8490 97% 0.0 99% KU509998.3 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 7712 8490 97% 0.0 99% KU926310.1 Select seq gb|KX879603.1| Zika virus isolate SN062, complete genome 7708 8492 97% 0.0 99% KX879603.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 7708 8492 97% 0.0 99% KX447513.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 7708 8483 97% 0.0 99% KU321639.1 Select seq gb|KX811222.1| Zika virus isolate Brazil_2015_MG, complete genome 7703 8486 97% 0.0 99% KX811222.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 7703 8486 97% 0.0 99% KX197205.1 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 7703 8486 97% 0.0 99% KJ776791.2 Select seq gb|KX447521.1| Zika virus isolate 1_0080_PF polyprotein gene, partial cds 7703 8486 97% 0.0 99% KX447521.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 7703 8481 97% 0.0 99% KX447515.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 7703 8486 97% 0.0 99% KX447512.1 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 7703 8486 97% 0.0 99% KX447509.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 7703 8486 97% 0.0 99% KX369547.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 7703 8486 97% 0.0 99% KX262887.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 7703 8477 97% 0.0 99% KX197192.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 7703 8486 97% 0.0 99% KU940228.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 7703 8486 97% 0.0 99% KU729217.2 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 7703 8486 97% 0.0 99% KU707826.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 7703 8486 97% 0.0 99% KU365779.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 7699 8483 97% 0.0 99% KU365780.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 7699 8483 97% 0.0 99% KU365777.1 Select seq gb|KY014309.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ47D1-PLA polyprotein gene, partial cds 7698 8476 97% 0.0 99% KY014309.1 Select seq gb|KX447520.1| Zika virus isolate 1_0016_PF polyprotein gene, partial cds 7694 8472 97% 0.0 99% KX447520.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 7694 8477 97% 0.0 99% KX447514.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 7694 8477 97% 0.0 99% KX447511.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 7694 8477 97% 0.0 99% KX051563.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 7694 8477 97% 0.0 99% KU501217.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 7694 8477 97% 0.0 99% KU501216.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 7694 8472 97% 0.0 99% KU365778.1 Select seq gb|KY014297.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-6864-URI polyprotein gene, complete cds 7692 8476 97% 0.0 99% KY014297.1 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 7692 8393 96% 0.0 99% KU940224.1 Select seq gb|KY014317.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ28D1-URI polyprotein gene, complete cds 7690 8474 97% 0.0 99% KY014317.1 Select seq gb|KX806557.2| Zika virus isolate TS17-2016, complete genome 7690 8468 97% 0.0 99% KX806557.2 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 7690 8474 97% 0.0 99% KX694534.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 7690 8474 97% 0.0 99% KX447516.1 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 7690 8474 97% 0.0 99% KX247632.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 7690 8474 97% 0.0 99% KU991811.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 7690 8468 97% 0.0 99% KU527068.1 Select seq gb|KY014307.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ49D1-PLA polyprotein gene, complete cds 7689 8468 97% 0.0 99% KY014307.1 Select seq gb|KY014315.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME152-SER polyprotein gene, complete cds 7687 8465 97% 0.0 99% KY014315.1 Select seq gb|KY014306.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME178-PLA polyprotein gene, complete cds 7687 8470 97% 0.0 99% KY014306.1 Select seq gb|KY014327.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME167-PLA polyprotein gene, complete cds 7685 8468 97% 0.0 99% KY014327.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 7685 8468 97% 0.0 99% KX520666.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 7685 8468 97% 0.0 99% KU758877.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 7685 8468 97% 0.0 99% KU926309.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 7685 8459 97% 0.0 99% KU497555.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 7685 8463 97% 0.0 99% KU501215.1 Select seq gb|KY014319.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME38-PLA polyprotein gene, complete cds 7681 8306 97% 0.0 99% KY014319.1 Select seq gb|KX856011.1| Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome 7681 8465 97% 0.0 99% KX856011.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 7681 8459 97% 0.0 99% KX601168.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 7681 8465 97% 0.0 99% KX446951.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 7681 8459 97% 0.0 99% KX377337.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 7681 8459 97% 0.0 99% KX087101.2 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 7681 8456 97% 0.0 99% KX198135.1 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 7681 8459 97% 0.0 99% KU870645.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 7681 8459 97% 0.0 99% KU312312.1 Select seq gb|KY014310.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME42-SER polyprotein gene, complete cds 7678 8461 97% 0.0 99% KY014310.1 Select seq gb|KY014303.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0127-SER polyprotein gene, complete cds 7676 8454 97% 0.0 99% KY014303.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 7676 8449 97% 0.0 99% KX447517.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 7676 8459 97% 0.0 99% KX446950.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 7676 8459 97% 0.0 99% KU937936.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 7676 8459 97% 0.0 99% KU955590.1 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 7672 8456 97% 0.0 99% KX766029.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 7672 8447 97% 0.0 99% KX117076.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 7672 8456 97% 0.0 99% KX056898.1 Select seq gb|KY014320.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ42D1-URI polyprotein gene, complete cds 7667 8411 97% 0.0 99% KY014320.1 Select seq gb|KY014296.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ131D1-URI polyprotein gene, complete cds 7667 8450 97% 0.0 99% KY014296.1 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 7667 8441 97% 0.0 99% KX253996.1 Link to comment Share on other sites More sharing options...
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