niman Posted October 22, 2016 Report Share Posted October 22, 2016 The Broad Institute has release a set for full Florida mosquito sequences, Link to comment Share on other sites More sharing options...
niman Posted October 22, 2016 Author Report Share Posted October 22, 2016 Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-01-MOS polyprotein gene, complete cds 10,659 bp linear RNA Accession: KY014324.1 GI: 1087986200 GenBankFASTAGraphics Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-02-MOS polyprotein gene, complete cds 10,646 bp linear RNA Accession: KY014323.1 GI: 1087986198 GenBankFASTAGraphics Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-03-MOS polyprotein gene, complete cds 10,659 bp linear RNA Accession: KY014322.1 GI: 1087986193 GenBankFASTAGraphics Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-04-MOS polyprotein gene, complete cds 10,651 bp linear RNA Accession: KY014299.1 GI: 1087986128 GenBankFASTAGraphics Link to comment Share on other sites More sharing options...
niman Posted October 23, 2016 Author Report Share Posted October 23, 2016 LOCUS KY014324 10659 bp RNA linear VRL 21-OCT-2016 DEFINITION Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-01-MOS polyprotein gene, complete cds. ACCESSION KY014324 VERSION KY014324.1 DBLINK BioProject: PRJNA344504 BioSample: SAMN05761900 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10659) AUTHORS Baniecki,M.L., Barnes,K.G., Bosch,I., Freije,C.A., Gehrke,L., Gladden-Young,A.D., Gnirke,A., Isern,S., Luo,C.Y., MacInnis,B., Matranga,C.B., Metsky,H.C., Michael,S., Park,D.J., Paul,L., Porcelli,M., Qu,J., Sabeti,P.C., Tomkins-Tinch,C.H., Vasquez,C., West,K.L., Winnicki,S., Wohl,S. and Yozwiak,N.L. TITLE Direct Submission JOURNAL Submitted (20-OCT-2016) Viral Genomics, Infectious Disease Program (Infectious Disease Initiative), Broad Institute, 75 Ames St, Cambridge, MA 02142, USA COMMENT ##Assembly-Data-START## Assembly Method :: github.com/broadinstitute/viral-ngs v. v1.11.0-119-g0edb62f-dirty Assembly Name :: USA_2016_FL-01_MOS-1 Coverage :: 479x Sequencing Technology :: Illumina; Swift LC ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10659 /organism="Zika virus" /mol_type="genomic RNA" /isolate="Zika virus/A.aegypti-wt/USA/2016/FL-01-MOS" /isolation_source="pool of 39 female mosquitos" /host="Aedes aegypti" /db_xref="taxon:64320" /country="USA: Miami, FL" /collection_date="22-Aug-2016" /collected_by="Miami-Dade Mosquito Control" 5'UTR <1..88 CDS 89..10360 /note="contains structural and nonstructural proteins" /codon_start=1 /product="polyprotein" /protein_id="AOY08545.1" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSVVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGKREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLVNGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTIEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGEEEKYMDYLST QVRYLGEEGSTPGVL" 3'UTR 10361..10659 ORIGIN 1 tcagactgcg acagttcgag tttgaagcga aagctagcaa cagtatcaac aggttttatt 61 ttggatttgg aaacgagagt ttctggtcat gaaaaaccca aaaaagaaat ccggaggatt 121 ccggattgtc aatatgctaa aacgcggagt agcccgtgtg agcccctttg ggggcttgaa 181 gaggctgcca gccggacttc tgctgggtca tgggcccatc aggatggtct tggcgattct 241 agcctttttg agattcacgg caatcaagcc atcactgggt ctcatcaata gatggggttc 301 agtggggaaa aaagaggcta tggaaataat aaagaagttc aagaaagatc tggctgccat 361 gctgagaata atcaatgcta ggaaggagaa gaagagacga ggcgcagata ctagtgtcgg 421 aattgttggc ctcctgctga ccacagctat ggcagcggag gtcactagac gtgggagtgc 481 atactacatg tacttggaca gaaacgatgc tggggaggcc atatctttcc caaccacatt 541 ggggatgaat aagtgttata tacagatcat ggatcttgga cacatgtgtg atgccaccat 601 gagctatgaa tgccctatgc tggatgaggg ggtagaacca gatgacgtcg attgttggtg 661 caacacgacg tcaacttggg ttgtgtacgg aacctgccat cacaaaaaag gtgaagcacg 721 gagatctaga agagctgtga cgctcccctc ccattccact aggaagctgc aaacgcggtc 781 gcaaacctgg ttggaatcaa gagaatacac aaagcacttg attagagtcg aaaattggat 841 attcaggaac cctggcttcg cgttagcagc agctgccatc gcttggcttt tgggaagctc 901 aacgagccaa aaagttatat acttggtcat gatactgctg attgccccgg catacagcat 961 caggtgcata ggagtcagca atagggactt tgtggaaggt atgtcaggtg ggacttgggt 1021 tgatgttgtc ttggaacatg gaggctgtgt caccgtaatg gcacaggaca aaccgactgt 1081 cgacatagag ctggttacaa caacagtcag caacatggcg gaggtaagat cctactgcta 1141 tgaggcatca atatcagaca tggcttcgga cagccgctgc ccaacacaag gtgaagccta 1201 ccttgacaag caatcagaca ctcaatatgt ctgcaaaaga acgttagtgg acagaggctg 1261 gggaaatgga tgtggacttt ttggcaaagg gagcctggtg acatgcgcta agtttgcatg 1321 ctccaagaaa atgaccggga agagcatcca gccagagaat ctggagtacc ggataatgct 1381 gtcagttcat ggctcccagc acagtgggat gatcgttaat gacacaggac atgaaactga 1441 tgagaataga gcgaaggttg agataacgcc caattcacca agagccgaag ccaccctggg 1501 gggttttgga agcctaggac tggattgtga accgaggaca ggccttgact tttcagattt 1561 gtattacttg actatgaata acaagcactg gttggttcac aaggagtggt tccacgacat 1621 tccattacct tggcacgctg gggcagacac cggaactcca cactggaaca acaaagaagc 1681 actggtagag ttcaaggacg cacatgccaa aaggcaaact gtcgtggttc tagggagtca 1741 agaaggagca gttcacacgg cccttgctgg agctctggag gctgagatgg atggtgcaaa 1801 gggaaggctg tcctctggcc acttgaaatg tcgcctgaaa atggataaac ttagattgaa 1861 gggcgtgtca tactccttgt gtaccgcagc gttcacattc accaagatcc cggctgaaac 1921 actgcacggg acagtcacag tggaggtaca gtacgcaggg acagatggac cttgcaaggt 1981 tccagctcag atggcggtgg acatgcaaac tctgacccca gttgggaggt tgataaccgc 2041 caaccccgta atcactgaaa gcactgagaa ctctaagatg atgctggaac ttgatccacc 2101 atttggggac tcttacattg tcataggagt cggggagaag aagatcaccc accactggca 2161 caggagtggc agcaccattg gaaaagcatt tgaagccact gtgagaggtg ccaagagaat 2221 ggcagtcttg ggagatacag cctgggactt tggatcagtt ggaggcgctc tcaactcatt 2281 gggcaagggc atccatcaaa tttttggagc agctttcaaa tcattgtttg gaggaatgtc 2341 ctggttctca caaatcctca ttggaacgtt gctgatgtgg ttgggtctga acacaaagaa 2401 tggatctatt tccctcatgt gcttggcctt agggggagtg ttgatcttct tatccacagc 2461 cgtctctgct gatgtggggt gctcggtgga cttctcaaag aaggagacga gatgcggtac 2521 aggggtgttc gtctataacg acgttgaagc ctggagggac aggtacaagt accatcctga 2581 ctccccccgt agattggcag cagcagtcaa gcaagcctgg gaagatggta tctgcgggat 2641 ctcctctgtt tcaagaatgg aaaacatcat gtggagatca gtagaagggg agctcaatgc 2701 aatcctggaa gagaatggag ttcaactgac ggtcgttgtg ggatctgtaa aaaaccccat 2761 gtggagaggt ccacagagat tgcccgtgcc tgtgaacgag ctgccccacg gctggaaggc 2821 ttgggggaaa tcgtacttcg ttagagcagc aaagacaaat aacagctttg tcgtggatgg 2881 tgacacactg aaggaatgcc cactcaaaca tagagcatgg aacagctttc ttgtggagga 2941 tcatgggttc ggggtatttc acactagtgt ctggctcaag gttagagaag attattcatt 3001 agagtgtgat ccagccgtta ttggaacagc tgttaaggga aaggaggctg tacacagtga 3061 tctaggctac tggattgaga gtgagaagaa tgacacatgg aggctgaaga gggcccatct 3121 gatcgagatg aaaacatgtg aatggccaaa gtcccacaca ttgtggacag atggaataga 3181 agagagtgat ctgatcatac ccaagtcttt agctgggcca ctcagccatc acaataccag 3241 agagggctac aggacccaaa tgaaagggcc atggcacagt gaagagcttg aaattcggtt 3301 tgaggaatgc ccaggcacta aggtccacgt ggaggaaaca tgtggaacaa gaggaccatc 3361 tctgagatca accactgcaa gcggaagggt gatcgaggaa tggtgctgca gggagtgcac 3421 aatgccccca ctgtcgttcc gggctaaaga tggctgttgg tatggaatgg agataaggcc 3481 caggaaagaa ccagaaagca acttagtaag gtcagtggtg actgcaggat caactgatca 3541 catggatcac ttctcccttg gagtgcttgt gattctgctc atggtgcagg aagggctgaa 3601 gaagagaatg accacaaaga tcatcataag cacatcaatg gcagtgctgg tagctatgat 3661 cctgggagga ttttcaatga gtgacctggc taagcttgca attttgatgg gtgccacctt 3721 cgcggaaatg aacactggag gagatgtagc tcatctggcg ctgatagcgg cattcaaagt 3781 cagaccagcg ttgctggtat ctttcatctt cagagctaat tggacacccc gtgaaagcat 3841 gctgctggcc ttggcctcgt gtcttttgca aactgcgatc tccgccttgg aaggcgacct 3901 gatggttctc atcaatgggt ttgctttggc ctggttggca atacgagcga tggttgttcc 3961 acgcactgat aacatcacct tggcaatcct ggctgctctg acaccactgg cccggggcac 4021 actgcttgtg gcgtggagag caggccttgc tacttgcggg gggtttatgc tcctctctct 4081 gaagggaaaa ggcagtgtga agaagaactt accatttgtc atggccctgg gactaaccgc 4141 tgtgaggctg gtcgacccca tcaacgtggt gggactgctg ttgctcacaa ggagtgggaa 4201 gcggagctgg ccccctagcg aagtactcac agctgttggc ctgatatgcg cattggctgg 4261 agggttcgcc aaggcagata tagagatggc tgggcccatg gccgcggtcg gtctgctaat 4321 tgtcagttac gtggtctcag gaaagagtgt ggacatgtac attgaaagag caggtgacat 4381 cacatgggaa aaagatgcgg aagtcactgg aaacagtccc cggctcgatg tggcgctaga 4441 tgagagtggt gatttctccc tggtggagga tgacggtccc cccatgagag agatcatact 4501 caaggtggtc ctgatgacca tctgtggcat gaacccaata gccataccct ttgcagctgg 4561 agcgtggtac gtatacgtga agactggaaa aaggagtggt gctctatggg atgtgcctgc 4621 tcccaaggaa gtaaaaaagg gggagaccac agatggagtg tacagagtaa tgactcgtag 4681 actgctaggt tcaacacagg ttggagtggg agttatgcaa gagggggtct ttcacactat 4741 gtggcacgtc acaaaaggat ccgcgctgag aagcggtgaa gggagacttg atccatactg 4801 gggagatgtc aagcaggatc tggtgtcata ctgtggtcca tggaagctag atgccgcctg 4861 ggacgggcac agcgaggtgc agctcttggc cgtgcccccc ggagagagag cgaggaacat 4921 ccagactctg cccggaatat ttaagacaaa ggatggggac attggagcgg ttgcgctgga 4981 ttacccagca ggaacttcag gatctccaat cctagacaag tgtgggagag tgataggact 5041 ttatggcaat ggggtcgtga tcaaaaatgg gagttatgtt agtgccatca cccaagggag 5101 gagggaggaa gagactcctg ttgagtgctt cgagccttcg atgctgaaga agaagcagct 5161 aactgtctta gacttgcatc ctggagctgg gaaaaccagg agagttcttc ctgaaatagt 5221 ccgtgaagct ataaaaacaa gactccgtac tgtgatctta gctccaacca gggttgtcgc 5281 tgctgaaatg gaggaagccc ttagagggct tccagtgcgt tatatgacaa cagcagtcaa 5341 tgtcacccat tctggaacag aaatcgtcga cttaatgtgc catgccacct tcacttcacg 5401 tctactacag ccaatcagag tccccaacta taatctgtat attatggatg aggcccactt 5461 cacagatccc tcaagtatag cagcaagagg atacatttca acaagggttg agatgggcga 5521 ggcggctgcc atcttcatga ccgccacgcc accaggaacc cgtgacgcat ttccggactc 5581 caactcacca attatggaca ccgaagtgga agtcccagag agagcctgga gctcaggctt 5641 tgattgggtg acggatcatt ctggaaaaac agtttggttt gttccaagcg tgaggaacgg 5701 caatgagatc gcagcttgtc tgacaaaggc tggaaaacgg gtcatacagc tcagcagaaa 5761 gacttttgag acagagttcc agaaaacaaa acatcaagag tgggactttg tcgtgacaac 5821 cgacatttca gagatgggcg ccaactttaa agctgaccgt gtcatagatt ccaggagatg 5881 cctaaagccg gtcatacttg atggcgagag agtcattctg gctggaccca tgcctgtcac 5941 acatgccagc gctgcccaga ggagggggcg cataggcagg aatcccaaca aacctggaga 6001 tgagtatctg tatggaggtg ggtgcgcaga gactgacgaa gaccatgcac actggcttga 6061 agcaagaatg ctccttgaca atatttacct ccaagatggc ctcatagcct cgctctatcg 6121 acctgaggcc gacaaagtag cagccattga gggagagttc aagcttagga cggagcaaag 6181 gaagaccttt gtggaactca tgaaaagagg agatcttcct gtttggctgg cctatcaggt 6241 tgcatctgcc ggaataactt acacagatag aagatggtgc tttgatggca cgaccaacaa 6301 caccataatg gaagacagtg tgccggcaga ggtgtggacc agacacggag agaaaagagt 6361 gctcaaaccg aggtggatgg acgccagagt ttgttcagat catgcggccc tgaagtcatt 6421 caaggagttt gccgctggga aaagaggagc ggcttttgga gtgatggaag ccctgggaac 6481 actgccagga cacatgacag agagattcca ggaagccatt gacaacctcg ctgtgctcat 6541 gcgggcagag actggaagca ggccttacaa agccgcggcg gcccaattgc cggagaccct 6601 agagaccatt atgcttttgg ggttgctggg aacagtctcg ctgggaatct ttttcgtctt 6661 gatgaggaac aagggcatag ggaagatggg ctttggaatg gtgactcttg gggccagcgc 6721 atggctcatg tggctctcgg aaattgagcc agccagaatt gcatgtgtcc tcattgttgt 6781 gttcctattg ctggtggtgc tcatacctga gccagaaaag caaagatctc cccaggacaa 6841 ccaaatggca atcatcatca tggtagcagt aggtcttcta ggcttgatca ccgccaatga 6901 actcggatgg ttggagagaa caaagagtga cctaagccat ctaatgggaa agagagagga 6961 gggagcaacc ataggattct caatggacat tgacctgcgg ccagcctcag cttgggccat 7021 ctatgctgcc ttgacaactt tcattacccc agccgtccaa catgcagtga ccacttcata 7081 caacaactac tccttaatgg cgatggccac gcaagctgga gtgttgtttg gtatgggcaa 7141 agggatgcca ttctacgcat gggactttgg agtcccgctg ctaatgatag gttgctactc 7201 acaattaaca cccctgaccc taatagtggc catcattttg ctcgtggcgc actacatgta 7261 cttgatccca gggctgcagg cagcagctgc gcgtgctgcc cagaagagaa cggcagctgg 7321 catcatgaag aaccctgttg tggatggaat agtggtgact gacattgaca caatgacaat 7381 tgacccccaa gtggagaaaa agatgggaca ggtgctactc atagcagtag ccgtctccag 7441 cgccatactg tcgcggaccg cctgggggtg gggggaggct ggggccctga tcacagccgc 7501 aacttccact ttgtgggaag gctctccgaa caagtactgg aactcctcta cagccacttc 7561 actgtgtaac atttttaggg gaagttactt ggctggagct tctctaatct acacagtaac 7621 aagaaacgct ggcttggtca agagacgtgg gggtggaaca ggagagaccc tgggagagaa 7681 atggaaggcc cgcttgaacc agatgtcggc cctggagttc tactcctaca aaaagtcagg 7741 catcaccgag gtgtgcagag aagaggcccg ccgcgccctc aaggacggtg tggcaacggg 7801 aggccatgct gtgtcccgag gaagtgcaaa gctgagatgg ttggtggagc ggggatacct 7861 gcagccctat ggaaaggtca ttgatcttgg atgtggcaga gggggctgga gttactacgc 7921 cgccaccatc cgcaaagttc aagaagtgaa aggatacaca aaaggaggcc ctggtcatga 7981 agaacccgtg ttggtgcaaa gctatgggtg gaacatagtc cgtctcaaga gtggggtgga 8041 cgtctttcat atggcggctg agccgtgtga cacgttgcta tgtgacatag gtgagtcatc 8101 atctagtcct gaagtggaag aagcacggac gctcagagtc ctctccatgg tgggggattg 8161 gcttgaaaaa agaccaggag ccttttgtat aaaagtgttg tgcccataca ccagcactat 8221 gatggaaacc ctggagcgac tgcagcgtag gtatggggga ggactggtca gagtgccact 8281 ctcccgcaac tctacacatg agatgtactg ggtctctgga gcgaaaagca acaccataaa 8341 aagtgtgtcc accacgagcc agctcctctt ggggcgcatg gacgggccta ggaggccagt 8401 gaaatatgag gaggatgtga atctcggctc tggcacgcgg gctgtggtaa gctgcgctga 8461 agctcccaac atgaagatca ttggtaaccg cattgaaagg atccgcagtg agcacgcgga 8521 aacgtggttc tttgacgaga accacccata taggacatgg gcttaccatg gaagctatga 8581 ggcccccaca caagggtcag catcctctct agtaaacggg gttgtcaggc tcctgtcaaa 8641 accctgggat gtggtgactg gagtcacagg aatagccatg accgacacca caccgtatgg 8701 tcagcaaaga gttttcaagg aaaaagtgga cactagggtg ccagaccccc aagaaggcac 8761 tcgtcaggtt atgagcatgg tctcttcctg gttgtggaaa gagctaggta aacacaaacg 8821 gccacgagtc tgtaccaaag aagagttcat caacaaggtt cgtagcaatg cagcattagg 8881 ggcaatattt gaagaggaaa aagagtggaa gactgcagtg gaagctgtga acgatccaag 8941 gttctgggct ctagtggaca aggaaagaga gcaccacctg agaggagagt gccagagttg 9001 tgtgtacaac atgatgggaa aaagagaaaa gaaacaaggg gaatttggaa aggccaaggg 9061 cagccgcgcc atctggtata tgtggctagg ggctagattt ctagagttcg aagcccttgg 9121 attcttgaac gaggatcact ggatggggag agagaactca ggaggtggtg ttgaagggct 9181 gggattacaa agactcggat atgtcctaga agagatgagt cgcataccag gaggaaggat 9241 gtatgcagat gacactgctg gctgggatac ccgcatcagc aggtttgatc tagagaatga 9301 agctctaatc accaaccaaa tggagaaagg gcacagggcc ttggcattgg ccataatcaa 9361 gtacacatac caaaacaaag tggtaaaggt ccttagacca gctgaaaaag ggaaaacagt 9421 tatggacatt atttcgagac aagaccaaag ggggagcgga caagttgtca cttacgctct 9481 taacacattt accaacctag tggtgcaact cattcggaat atggaggctg aggaagttct 9541 agagatgcaa gacttgtggc tgctgcggag gtcagagaaa gtgaccaact ggttgcagag 9601 caacggatgg gataggctca aacgaatggc agtcagtgga gatgattgcg ttgtgaagcc 9661 aattgatgat aggtttgcac atgccctcag gttcttgaat gatatgggaa aagttaggaa 9721 ggacacacaa gagtggaaac cctcaactgg atgggacaac tgggaagaag ttccgttctg 9781 ctcccaccac ttcaacaagc tccatctcaa ggacgggagg tccattgtgg ttccctgccg 9841 ccaccaagat gaactgattg gccgggcccg cgtctctcca ggggcgggat ggagcatccg 9901 ggagactgct tgcctagcaa aatcatatgc gcaaatgtgg cagctccttt atttccacag 9961 aagggacctc cgactgatgg ccaatgccat ttgttcatct gtgccagttg actgggttcc 10021 aactgggaga actacctggt caatccatgg aaagggagaa tggatgacca ttgaagacat 10081 gcttgtggtg tggaacagag tgtggattga ggagaacgac cacatggaag acaagacccc 10141 agttacgaaa tggacagaca ttccctattt gggaaaaagg gaagacttgt ggtgtggatc 10201 tctcataggg cacagaccgc gcaccacctg ggctgagaac attaaaaaca cagtcaacat 10261 ggtgcgcagg atcataggtg aggaagaaaa gtacatggac tacctatcca cccaagtccg 10321 ctacttgggt gaagaagggt ctacacctgg agtgctgtaa gcaccaatct taatgttgtc 10381 aggcctgcta gtcagccaca gcttggggaa agctgtgcag cctgtgaccc ccccaggaga 10441 agctgggaaa ccaagcctat agtcaggccg agaacgccat ggcacggaag aagccatgct 10501 gcctgtgagc ccctcagagg acactgagtc aaaaaacccc acgcgcttgg aggcgcagga 10561 tgggaaaaga aggtggcgac cttccccacc cttcaatctg gggcctgaac tggagatcag 10621 ctgtggatct ccagaagagg gactagtggt tagaggaga Link to comment Share on other sites More sharing options...
niman Posted October 23, 2016 Author Report Share Posted October 23, 2016 Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KX838904.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds 18520 18520 100% 0.0 99% KX838904.2 Select seq gb|KX842449.2| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds 18498 18498 100% 0.0 99% KX842449.2 Select seq gb|KX922703.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds 18484 18484 100% 0.0 99% KX922703.1 Select seq gb|KX838905.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds 18484 18484 100% 0.0 99% KX838905.2 Select seq gb|KX832731.1| Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds 18484 18484 100% 0.0 99% KX832731.1 Select seq gb|KX922706.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds 18482 18482 100% 0.0 99% KX922706.1 Select seq gb|KX922704.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds 18480 18480 100% 0.0 99% KX922704.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 18429 18429 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 18429 18429 100% 0.0 99% KU853012.1 Select seq dbj|LC190723.1| Zika virus gnomic RNA, complete genome, strain: ZIKV/Hu/Yokohama/1/2016 18426 18426 100% 0.0 99% LC190723.1 Select seq gb|KX922707.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds 18408 18408 100% 0.0 99% KX922707.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 18408 18408 100% 0.0 99% KX673530.1 Select seq gb|KX838906.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds 18402 18402 100% 0.0 99% KX838906.2 Select seq gb|KX922705.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds 18392 18392 100% 0.0 99% KX922705.1 Select seq gb|KX922708.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds 18384 18384 100% 0.0 99% KX922708.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 18339 18339 100% 0.0 99% KX447510.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 18336 18336 100% 0.0 99% KX280026.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 18330 18330 100% 0.0 99% KX447512.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 18330 18330 100% 0.0 99% KX369547.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 18330 18330 100% 0.0 99% KU509998.3 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 18327 18327 100% 0.0 99% KJ776791.2 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 18327 18327 100% 0.0 99% KX447509.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 18327 18327 100% 0.0 99% KU991811.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 18327 18327 100% 0.0 99% KU729217.2 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 18321 18321 100% 0.0 99% KX447513.1 Select seq gb|KX811222.1| Zika virus isolate Brazil_2015_MG, complete genome 18318 18318 100% 0.0 99% KX811222.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 18318 18318 100% 0.0 99% KX197205.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 18318 18318 100% 0.0 99% KX447515.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 18318 18318 100% 0.0 99% KX447511.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 18318 18318 100% 0.0 99% KU321639.1 Select seq gb|KX879604.1| Zika virus isolate SN089, complete genome 18312 18312 100% 0.0 99% KX879604.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 18312 18312 100% 0.0 99% KX447514.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 18312 18312 100% 0.0 99% KX051563.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 18309 18309 100% 0.0 99% KX447516.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 18309 18309 100% 0.0 99% KU729218.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 18309 18309 100% 0.0 99% KU707826.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 18309 18309 100% 0.0 99% KU527068.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 18309 18309 100% 0.0 99% KU365779.1 Select seq gb|KX879603.1| Zika virus isolate SN062, complete genome 18303 18303 100% 0.0 99% KX879603.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 18303 18303 100% 0.0 99% KX262887.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 18303 18303 100% 0.0 99% KX197192.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 18303 18303 100% 0.0 99% KU926310.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 18303 18303 100% 0.0 99% KU926309.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 18300 18300 100% 0.0 99% KU940228.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 18294 18294 100% 0.0 99% KX694534.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 18294 18294 100% 0.0 99% KX198135.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 18294 18294 100% 0.0 99% KU501217.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 18294 18294 100% 0.0 99% KU365780.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 18291 18291 100% 0.0 99% KU647676.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 18291 18291 100% 0.0 99% KU501216.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 18291 18291 100% 0.0 99% KU365777.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 18285 18285 100% 0.0 99% KX447517.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 18285 18285 100% 0.0 99% KU758877.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 18285 18285 100% 0.0 99% KX247646.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 18285 18285 100% 0.0 99% KX156776.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 18282 18282 100% 0.0 99% KX520666.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 18282 18282 100% 0.0 99% KX156774.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 18282 18282 99% 0.0 99% KU497555.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 18276 18276 100% 0.0 99% KU820897.5 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 18276 18276 100% 0.0 99% KX247632.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 18276 18276 100% 0.0 99% KX156775.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 18276 18276 100% 0.0 99% KX087102.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 18276 18276 100% 0.0 99% KU365778.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 18276 18276 100% 0.0 99% KU312312.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 18273 18273 100% 0.0 99% KU922960.1 Select seq gb|KX806557.2| Zika virus isolate TS17-2016, complete genome 18267 18267 100% 0.0 99% KX806557.2 Select seq gb|KX856011.1| Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome 18267 18267 100% 0.0 99% KX856011.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 18267 18267 100% 0.0 99% KX548902.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 18267 18267 100% 0.0 99% KX446951.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 18267 18267 100% 0.0 99% KU937936.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 18267 18267 100% 0.0 99% KU922923.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 18267 18267 100% 0.0 99% KU501215.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 18264 18264 100% 0.0 99% KX601168.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 18264 18264 100% 0.0 99% KX446950.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 18264 18264 100% 0.0 99% KX087101.2 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 18264 18264 100% 0.0 99% KU870645.1 Select seq gb|KX893855.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-2/2016, complete genome 18262 18262 100% 0.0 99% KX893855.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 18258 18258 100% 0.0 99% KX702400.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 18258 18258 100% 0.0 99% KX377337.1 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 18249 18249 100% 0.0 99% KX766029.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 18249 18249 100% 0.0 99% KU820898.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 18245 18245 100% 0.0 99% KX056898.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 18245 18245 100% 0.0 99% KU955590.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 18242 18242 100% 0.0 99% KX766028.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 18240 18240 100% 0.0 99% KU740184.2 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 18240 18240 100% 0.0 99% KU761564.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 18236 18236 100% 0.0 99% KX117076.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 18227 18227 100% 0.0 99% KX185891.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 18227 18227 100% 0.0 99% KU963796.1 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 18222 18222 100% 0.0 99% KX253996.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 18222 18222 100% 0.0 99% KU955589.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 18222 18222 100% 0.0 99% KU820899.2 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 18218 18218 100% 0.0 99% KX266255.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 18218 18218 100% 0.0 99% KU866423.2 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 18204 18204 99% 0.0 99% KU940224.1 Select seq gb|KU744693.1| Zika virus isolate VE_Ganxian, complete genome 18092 18092 100% 0.0 99% KU744693.1 Select seq gb|KX827309.1| Zika virus isolate ZKA-16-291 polyprotein gene, complete cds 18069 18069 100% 0.0 99% KX827309.1 Select seq gb|KX813683.1| Zika virus isolate ZKA-16-097 polyprotein gene, complete cds 18056 18056 100% 0.0 99% KX813683.1 Select seq gb|KU681081.3| Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome 18002 18002 100% 0.0 99% KU681081.3 Select seq gb|KX694532.1| Zika virus strain ZIKV/Homo sapiens/THA/PLCal_ZV/2013, complete genome 17879 17879 100% 0.0 99% KX694532.1 Link to comment Share on other sites More sharing options...
niman Posted October 24, 2016 Author Report Share Posted October 24, 2016 Update Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KY014324.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-01-MOS polyprotein gene, complete cds 18525 18525 100% 0.0 100% KY014324.1 Select seq gb|KX838904.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds 18520 18520 100% 0.0 99% KX838904.2 Select seq gb|KY014295.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-010-URI polyprotein gene, complete cds 18498 18498 100% 0.0 99% KY014295.1 Select seq gb|KX842449.2| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds 18498 18498 100% 0.0 99% KX842449.2 Select seq gb|KY014323.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-02-MOS polyprotein gene, complete cds 18484 18484 100% 0.0 99% KY014323.1 Select seq gb|KX922703.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds 18484 18484 100% 0.0 99% KX922703.1 Select seq gb|KX838905.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds 18484 18484 100% 0.0 99% KX838905.2 Select seq gb|KX832731.1| Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds 18484 18484 100% 0.0 99% KX832731.1 Select seq gb|KX922706.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds 18482 18482 100% 0.0 99% KX922706.1 Select seq gb|KX922704.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds 18480 18480 100% 0.0 99% KX922704.1 Select seq gb|KY014304.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0180-SER polyprotein gene, complete cds 18435 18435 100% 0.0 99% KY014304.1 Select seq gb|KY014300.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0208-SER polyprotein gene, complete cds 18435 18435 100% 0.0 99% KY014300.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 18429 18429 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 18429 18429 100% 0.0 99% KU853012.1 Select seq dbj|LC190723.1| Zika virus genomic RNA, complete genome, strain: ZIKV/Hu/Yokohama/1/2016 18426 18426 100% 0.0 99% LC190723.1 Select seq gb|KY014321.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0115-SER polyprotein gene, complete cds 18420 18420 100% 0.0 99% KY014321.1 Select seq gb|KX922707.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds 18408 18408 100% 0.0 99% KX922707.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 18408 18408 100% 0.0 99% KX673530.1 Select seq gb|KY014322.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-03-MOS polyprotein gene, complete cds 18402 18402 100% 0.0 99% KY014322.1 Select seq gb|KY014314.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0436-SER polyprotein gene, complete cds 18402 18402 100% 0.0 99% KY014314.1 Select seq gb|KX838906.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds 18402 18402 100% 0.0 99% KX838906.2 Select seq gb|KY014316.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-039-URI polyprotein gene, complete cds 18399 18399 100% 0.0 99% KY014316.1 Select seq gb|KX922705.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds 18392 18392 100% 0.0 99% KX922705.1 Select seq gb|KX922708.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds 18384 18384 100% 0.0 99% KX922708.1 Select seq gb|KY014299.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-04-MOS polyprotein gene, complete cds 18381 18381 100% 0.0 99% KY014299.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 18339 18339 100% 0.0 99% KX447510.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 18336 18336 100% 0.0 99% KX280026.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 18330 18330 100% 0.0 99% KX447512.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 18330 18330 100% 0.0 99% KX369547.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 18330 18330 100% 0.0 99% KU509998.3 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 18327 18327 100% 0.0 99% KJ776791.2 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 18327 18327 100% 0.0 99% KX447509.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 18327 18327 100% 0.0 99% KU991811.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 18327 18327 100% 0.0 99% KU729217.2 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 18321 18321 100% 0.0 99% KX447513.1 Select seq gb|KX811222.1| Zika virus isolate Brazil_2015_MG, complete genome 18318 18318 100% 0.0 99% KX811222.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 18318 18318 100% 0.0 99% KX197205.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 18318 18318 100% 0.0 99% KX447515.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 18318 18318 100% 0.0 99% KX447511.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 18318 18318 100% 0.0 99% KU321639.1 Select seq gb|KX879604.1| Zika virus isolate SN089, complete genome 18312 18312 100% 0.0 99% KX879604.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 18312 18312 100% 0.0 99% KX447514.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 18312 18312 100% 0.0 99% KX051563.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 18309 18309 100% 0.0 99% KX447516.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 18309 18309 100% 0.0 99% KU729218.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 18309 18309 100% 0.0 99% KU707826.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 18309 18309 100% 0.0 99% KU527068.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 18309 18309 100% 0.0 99% KU365779.1 Select seq gb|KX879603.1| Zika virus isolate SN062, complete genome 18303 18303 100% 0.0 99% KX879603.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 18303 18303 100% 0.0 99% KX262887.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 18303 18303 100% 0.0 99% KX197192.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 18303 18303 100% 0.0 99% KU926310.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 18303 18303 100% 0.0 99% KU926309.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 18300 18300 100% 0.0 99% KU940228.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 18294 18294 100% 0.0 99% KX694534.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 18294 18294 100% 0.0 99% KX198135.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 18294 18294 100% 0.0 99% KU501217.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 18294 18294 100% 0.0 99% KU365780.1 Select seq gb|KY014303.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0127-SER polyprotein gene, complete cds 18291 18291 100% 0.0 99% KY014303.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 18291 18291 100% 0.0 99% KU647676.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 18291 18291 100% 0.0 99% KU501216.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 18291 18291 100% 0.0 99% KU365777.1 Select seq gb|KY014297.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-6864-URI polyprotein gene, complete cds 18285 18285 100% 0.0 99% KY014297.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 18285 18285 100% 0.0 99% KX447517.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 18285 18285 100% 0.0 99% KU758877.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 18285 18285 100% 0.0 99% KX247646.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 18285 18285 100% 0.0 99% KX156776.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 18282 18282 100% 0.0 99% KX520666.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 18282 18282 100% 0.0 99% KX156774.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 18282 18282 99% 0.0 99% KU497555.1 Select seq gb|KY014327.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME167-PLA polyprotein gene, complete cds 18278 18278 100% 0.0 99% KY014327.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 18276 18276 100% 0.0 99% KU820897.5 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 18276 18276 100% 0.0 99% KX247632.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 18276 18276 100% 0.0 99% KX156775.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 18276 18276 100% 0.0 99% KX087102.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 18276 18276 100% 0.0 99% KU365778.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 18276 18276 100% 0.0 99% KU312312.1 Select seq gb|KY014315.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME152-SER polyprotein gene, complete cds 18273 18273 100% 0.0 99% KY014315.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 18273 18273 100% 0.0 99% KU922960.1 Select seq gb|KY014296.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ131D1-URI polyprotein gene, complete cds 18267 18267 100% 0.0 99% KY014296.1 Select seq gb|KX806557.2| Zika virus isolate TS17-2016, complete genome 18267 18267 100% 0.0 99% KX806557.2 Select seq gb|KX856011.1| Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome 18267 18267 100% 0.0 99% KX856011.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 18267 18267 100% 0.0 99% KX548902.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 18267 18267 100% 0.0 99% KX446951.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 18267 18267 100% 0.0 99% KU937936.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 18267 18267 100% 0.0 99% KU922923.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 18267 18267 100% 0.0 99% KU501215.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 18264 18264 100% 0.0 99% KX601168.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 18264 18264 100% 0.0 99% KX446950.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 18264 18264 100% 0.0 99% KX087101.2 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 18264 18264 100% 0.0 99% KU870645.1 Select seq gb|KX893855.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-2/2016, complete genome 18262 18262 100% 0.0 99% KX893855.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 18258 18258 100% 0.0 99% KX702400.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 18258 18258 100% 0.0 99% KX377337.1 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 18249 18249 100% 0.0 99% KX766029.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 18249 18249 100% 0.0 99% KU820898.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 18245 18245 100% 0.0 99% KX056898.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 18245 18245 100% 0.0 99% KU955590.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 18242 18242 100% 0.0 99% KX766028.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 18240 18240 100% 0.0 99% KU740184.2 Link to comment Share on other sites More sharing options...
niman Posted October 24, 2016 Author Report Share Posted October 24, 2016 LOCUS KY014323 10646 bp RNA linear VRL 21-OCT-2016 DEFINITION Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-02-MOS polyprotein gene, complete cds. ACCESSION KY014323 VERSION KY014323.1 DBLINK BioProject: PRJNA344504 BioSample: SAMN05761899 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10646) AUTHORS Baniecki,M.L., Barnes,K.G., Bosch,I., Freije,C.A., Gehrke,L., Gladden-Young,A.D., Gnirke,A., Isern,S., Luo,C.Y., MacInnis,B., Matranga,C.B., Metsky,H.C., Michael,S., Park,D.J., Paul,L., Porcelli,M., Qu,J., Sabeti,P.C., Tomkins-Tinch,C.H., Vasquez,C., West,K.L., Winnicki,S., Wohl,S. and Yozwiak,N.L. TITLE Direct Submission JOURNAL Submitted (20-OCT-2016) Viral Genomics, Infectious Disease Program (Infectious Disease Initiative), Broad Institute, 75 Ames St, Cambridge, MA 02142, USA COMMENT ##Assembly-Data-START## Assembly Method :: github.com/broadinstitute/viral-ngs v. v1.11.0-119-g0edb62f-dirty Assembly Name :: USA_2016_FL-02_MOS-1 Coverage :: 98x Sequencing Technology :: Illumina; Swift LC ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10646 /organism="Zika virus" /mol_type="genomic RNA" /isolate="Zika virus/A.aegypti-wt/USA/2016/FL-02-MOS" /isolation_source="pool of 25 female mosquitos" /host="Aedes aegypti" /db_xref="taxon:64320" /country="USA: Miami, FL" /collection_date="23-Aug-2016" /collected_by="Miami-Dade Mosquito Control" 5'UTR <1..88 CDS 89..10360 /note="contains structural and nonstructural proteins" /codon_start=1 /product="polyprotein" /protein_id="AOY08544.1" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSVVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLVNGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTIEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGEEEKYMDYLST QVRYLGEEGSTPGVL" 3'UTR 10361..>10646 ORIGIN 1 tcagactgcg acagttcgag tttgaagcga aagctagcaa cagtatcaac aggttttatt 61 ttggatttgg aaacgagagt ttctggtcat gaaaaaccca aaaaagaaat ccggaggatt 121 ccggattgtc aatatgctaa aacgcggagt agcccgtgtg agcccctttg ggggcttgaa 181 gaggctgcca gccggacttc tgctgggtca tgggcccatc aggatggtct tggcgattct 241 agcctttttg agattcacgg caatcaagcc atcactgggt ctcatcaata gatggggttc 301 agtggggaaa aaagaggcta tggaaataat aaagaagttc aagaaagatc tggctgccat 361 gctgagaata atcaatgcta ggaaggagaa gaagagacga ggcgcagata ctagtgtcgg 421 aattgttggc ctcctgctga ccacagctat ggcagcggag gtcactagac gtgggagtgc 481 atactacatg tacttggaca gaaacgatgc tggggaggcc atatctttcc caaccacatt 541 ggggatgaat aagtgttata tacagatcat ggatcttgga cacatgtgtg atgccaccat 601 gagctatgaa tgccctatgc tggatgaggg ggtggaacca gatgacgtcg attgttggtg 661 caacacgacg tcaacttggg ttgtgtacgg aacctgccat cacaaaaaag gtgaagcacg 721 gagatctaga agagctgtga cgctcccctc ccattccact aggaagctgc aaacgcggtc 781 gcaaacctgg ttggaatcaa gagaatacac aaagcacttg attagagtcg aaaattggat 841 attcaggaac cctggcttcg cgttagcagc agctgccatc gcttggcttt tgggaagctc 901 aacgagccaa aaagttatat acttggtcat gatactgctg attgccccgg catacagcat 961 caggtgcata ggagtcagca atagggactt tgtggaaggt atgtcaggtg ggacttgggt 1021 tgatgttgtc ttggaacatg gaggctgtgt caccgtaatg gcacaggaca aaccgactgt 1081 cgacatagag ctggttacaa caacagtcag caacatggcg gaggtaagat cctactgcta 1141 tgaggcatca atatcagaca tggcttcgga cagccgctgc ccaacacaag gtgaagccta 1201 ccttgacaag caatcagaca ctcaatatgt ctgcaaaaga acgttagtgg acagaggctg 1261 gggaaatgga tgtggacttt ttggcaaagg gagcctggtg acatgcgcta agtttgcatg 1321 ctccaagaaa atgaccggga agagcatcca gccagagaat ctggagtacc ggataatgct 1381 gtcagttcat ggctcccagc acagtgggat gatcgttaat gacacaggac atgaaactga 1441 tgagaataga gcgaaggttg agataacgcc caattcacca agagccgaag ccaccctggg 1501 gggttttgga agcctaggac tggattgtga accgaggaca ggccttgact tttcagattt 1561 gtattacttg actatgaata acaagcactg gttggttcac aaggagtggt tccacgacat 1621 tccattacct tggcacgctg gggcagacac cggaactcca cactggaaca acaaagaagc 1681 actggtagag ttcaaggacg cacatgccaa aaggcaaact gtcgtggttc tagggagtca 1741 agaaggagca gttcacacgg cccttgctgg agctctggag gctgagatgg atggtgcaaa 1801 gggaaggctg tcctctggcc acttgaaatg tcgcctgaaa atggataaac ttagattgaa 1861 gggcgtgtca tactccttgt gtaccgcagc gttcacattc accaagatcc cggctgaaac 1921 actgcacggg acagtcacag tggaggtaca gtacgcaggg acagatggac cttgcaaggt 1981 tccagctcag atggcggtgg acatgcaaac tctgacccca gttgggaggt tgataaccgc 2041 caaccccgta atcactgaaa gcactgagaa ctctaagatg atgctggaac ttgatccacc 2101 atttggggac tcttacattg tcataggagt cggggagaag aagatcaccc accactggca 2161 caggagtggc agcaccattg gaaaagcatt tgaagccact gtgagaggtg ccaagagaat 2221 ggcagtcttg ggagatacag cctgggactt tggatcagtt ggaggcgctc tcaactcatt 2281 gggcaagggc atccatcaaa tttttggagc agctttcaaa tcattgtttg gaggaatgtc 2341 ctggttctca caaatcctca ttggaacgtt gctgatgtgg ttgggtctga acacaaagaa 2401 tggatctatt tccctcatgt gcttggcctt agggggagtg ttgatcttct tatccacagc 2461 cgtctctgct gatgtggggt gctcggtgga cttctcaaag aaggagacga gatgcggtac 2521 aggggtgttc gtctataacg acgttgaagc ctggagggac aggtacaagt accatcctga 2581 ctccccccgt agattggcag cagcagtcaa gcaagcctgg gaagatggta tctgcgggat 2641 ctcctctgtt tcaagaatgg aaaacatcat gtggagatca gtagaagggg agctcaatgc 2701 aatcctggaa gagaatggag ttcaactgac ggtcgttgtg ggatctgtaa aaaaccccat 2761 gtggagaggt ccacagagat tgcccgtgcc tgtgaacgag ctgccccacg gctggaaggc 2821 ttgggggaaa tcgtacttcg ttagagcagc aaagacaaat aacagctttg tcgtggatgg 2881 tgacacactg aaggaatgcc cactcaaaca tagagcatgg aacagctttc ttgtggagga 2941 tcatgggttc ggggtatttc acactagtgt ctggctcaag gttagagaag attattcatt 3001 agagtgtgat ccagccgtta ttggaacagc tgttaaggga aaggaggctg tacacagtga 3061 tctaggctac tggattgaga gtgagaagaa tgacacatgg aggctgaaga gggcccatct 3121 gatcgagatg aaaacatgtg aatggccaaa gtcccacaca ttgtggacag atggaataga 3181 agagagtgat ctgatcatac ccaagtcttt agctgggcca ctcagccatc acaataccag 3241 agagggctac aggacccaaa tgaaagggcc atggcacagt gaagagcttg aaattcggtt 3301 tgaggaatgc ccaggcacta aggtccacgt ggaggaaaca tgtggaacaa gaggaccatc 3361 tctgagatca accactgcaa gcggaagggt gatcgaggaa tggtgctgca gggagtgcac 3421 aatgccccca ctgtcgttcc gggctaaaga tggctgttgg tatggaatgg agataaggcc 3481 caggaaagaa ccagaaagca acttagtaag gtcagtggtg actgcaggat caactgatca 3541 catggatcac ttctcccttg gagtgcttgt gattctgctc atggtgcagg aagggctgaa 3601 gaagagaatg accacaaaga tcatcataag cacatcaatg gcagtgctgg tagctatgat 3661 cctgggagga ttttcaatga gtgacctggc taagcttgca attttgatgg gtgccacctt 3721 cgcggaaatg aacactggag gagatgtagc tcatctggcg ctgatagcgg cattcaaagt 3781 cagaccagcg ttgctggtat ctttcatctt cagagctaat tggacacccc gtgaaagcat 3841 gctgctggcc ttggcctcgt gtcttttgca aactgcgatc tccgccttgg aaggcgacct 3901 gatggttctc atcaatggtt ttgctttggc ctggttggca atacgagcga tggttgttcc 3961 acgcactgat aacatcacct tggcaatcct ggctgctctg acaccactgg cccggggcac 4021 actgcttgtg gcgtggagag caggccttgc tacttgcggg gggtttatgc tcctctctct 4081 gaagggaaaa ggcagtgtga agaagaactt accatttgtc atggccctgg gactaaccgc 4141 tgtgaggctg gtcgacccca tcaacgtggt gggactgctg ttgctcacaa ggagtgggaa 4201 gcggagctgg ccccctagcg aagtactcac agctgttggc ctgatatgcg cattggctgg 4261 agggttcgcc aaggcagata tagagatggc tgggcccatg gccgcggtcg gtctgctaat 4321 tgtcagttac gtggtctcag gaaagagtgt ggacatgtac attgaaagag caggtgacat 4381 cacatgggaa aaagatgcgg aagtcactgg aaacagtccc cggctcgatg tggcgctaga 4441 tgagagtggt gatttctccc tggtggagga tgacggtccc cccatgagag agatcatact 4501 caaggtggtc ctgatgacca tctgtggcat gaacccaata gccataccct ttgcagctgg 4561 agcgtggtac gtatacgtga agactggaaa aaggagtggt gctctatggg atgtgcctgc 4621 tcccaaggaa gtaaaaaagg gggagaccac agatggagtg tacagagtaa tgactcgtag 4681 actgctaggt tcaacacaag ttggagtggg agttatgcaa gagggggtct ttcacactat 4741 gtggcacgtc acaaaaggat ccgcgctgag aagcggtgaa gggagacttg atccatactg 4801 gggagatgtc aagcaggatc tggtgtcata ctgtggtcca tggaagctag atgccgcctg 4861 ggacgggcac agcgaggtgc agctcttggc cgtgcccccc ggagagagag cgaggaacat 4921 ccagactctg cccggaatat ttaagacaaa ggatggggac attggagcgg ttgcgctgga 4981 ttacccagca ggaacttcag gatctccaat cctagacaag tgtgggagag tgataggact 5041 ttatggcaat ggggtcgtga tcaaaaatgg gagttatgtt agtgccatca cccaagggag 5101 gagggaggaa gagactcctg ttgagtgctt cgagccttcg atgctgaaga agaagcagct 5161 aactgtctta gacttgcatc ctggagctgg gaaaaccagg agagttcttc ctgaaatagt 5221 ccgtgaagct ataaaaacaa gactccgtac tgtgatctta gctccaacca gggttgtcgc 5281 tgctgaaatg gaggaagccc ttagagggct tccagtgcgt tatatgacaa cagcagtcaa 5341 tgtcacccat tctggaacag aaatcgtcga cttaatgtgc catgccacct tcacttcacg 5401 tctactacag ccaatcagag tccccaacta taatctgtat attatggatg aggcccactt 5461 cacagatccc tcaagtatag cagcaagagg atacatttca acaagggttg agatgggcga 5521 ggcggctgcc atcttcatga ccgccacgcc accaggaacc cgtgacgcat ttccggactc 5581 caactcacca attatggaca ccgaagtgga agtcccagag agagcctgga gctcaggctt 5641 tgattgggtg acggatcatt ctggaaaaac agtttggttt gttccaagcg tgaggaacgg 5701 caatgagatc gcagcttgtc tgacaaaggc tggaaaacgg gtcatacagc tcagcagaaa 5761 gacttttgag acagagttcc agaaaacaaa acatcaagag tgggactttg tcgtgacgac 5821 cgacatttca gagatgggcg ccaactttaa agctgaccgt gtcatagatt ccaggagatg 5881 cctaaagccg gtcatacttg atggcgagag agtcattctg gctggaccca tgcctgtcac 5941 acatgccagc gctgcccaga ggagggggcg cataggcagg aatcccaaca aacctggaga 6001 tgagtatctg tatggaggtg ggtgcgcaga gactgacgaa gaccatgcac actggcttga 6061 agcaagaatg ctccttgaca atatttacct ccaagatggc ctcatagcct cgctctatcg 6121 acctgaggcc gacaaagtag cagccattga gggagagttc aagcttagga cggagcaaag 6181 gaagaccttt gtggaactca tgaaaagagg agatcttcct gtttggctgg cctatcaggt 6241 tgcatctgcc ggaataactt acacagatag aagatggtgc tttgatggca cgaccaacaa 6301 caccataatg gaagacagtg tgccggcaga ggtgtggacc agacacggag agaaaagagt 6361 gctcaaaccg aggtggatgg acgccagagt ttgttcagat catgcggccc tgaagtcatt 6421 caaggagttt gccgctggga aaagaggagc ggcttttgga gtgatggaag ccctgggaac 6481 actgccagga cacatgacag agagattcca ggaagccatt gacaacctcg ctgtgctcat 6541 gcgggcagag actggaagca ggccttacaa agccgcggcg gcccaattgc cggagaccct 6601 agagaccatt atgcttttgg ggttgctggg aacagtctcg ctgggaatct ttttcgtctt 6661 gatgaggaac aagggcatag ggaagatggg ctttggaatg gtgactcttg gggccagcgc 6721 atggctcatg tggctctcgg aaattgagcc agccagaatt gcatgtgtcc tcattgttgt 6781 gttcctattg ctggtggtgc tcatacctga gccagaaaag caaagatctc cccaggacaa 6841 ccaaatggca atcatcatca tggtagcagt aggtcttcta ggcttgatca ccgccaatga 6901 actcggatgg ttggagagaa caaagagtga cctaagccat ctaatgggaa ggagagagga 6961 gggagcaacc ataggattct caatggacat tgacctgcgg ccagcctcag cttgggccat 7021 ctatgctgcc ttgacaactt tcattacccc agccgtccaa catgcagtga ccacttcata 7081 caacaactac tccttaatgg cgatggccac gcaagctgga gtgttgtttg gtatgggcaa 7141 agggatgcca ttctacgcat gggactttgg agtcccgctg ctaatgatag gttgctactc 7201 acaattaaca cccctgaccc taatagtggc catcattttg ctcgtggcgc actacatgta 7261 cttgatccca gggctgcagg cagcagctgc gcgtgctgcc cagaagagaa cggcagctgg 7321 catcatgaag aaccctgttg tggatggaat agtggtgact gacattgaca caatgacaat 7381 tgacccccaa gtggagaaaa agatgggaca ggtgctactc atagcagtag ccgtctccag 7441 cgccatactg tcgcggaccg cctgggggtg gggggaggct ggggccctga tcacagccgc 7501 aacttccact ttgtgggaag gctctccgaa caagtactgg aactcctcta cagccacttc 7561 actgtgtaac atttttaggg gaagttactt ggctggagct tctctaatct acacagtaac 7621 aagaaacgct ggcttggtca agagacgtgg gggtggaaca ggagagaccc tgggagagaa 7681 atggaaggcc cgcttgaacc agatgtcggc cctggagttc tactcctaca aaaagtcagg 7741 catcaccgag gtgtgcagag aagaggcccg ccgcgccctc aaggacggtg tggcaacggg 7801 aggccatgct gtgtcccgag gaagtgcaaa gctgagatgg ttggtggagc ggggatacct 7861 gcagccctat ggaaaggtca ttgatcttgg atgtggcaga gggggctgga gttactacgc 7921 cgccaccatc cgcaaagttc aagaagtgaa aggatacaca aaaggaggcc ctggtcatga 7981 agaacccgtg ttggtgcaaa gctatgggtg gaacatagtc cgtctcaaga gtggggtgga 8041 cgtctttcat atggcggctg agccgtgtga cacgttgcta tgtgacatag gtgagtcatc 8101 atctagtcct gaagtggaag aagcacggac gctcagagtc ctctccatgg tgggggattg 8161 gcttgaaaaa agaccaggag ccttttgtat aaaagtgttg tgcccataca ccagcactat 8221 gatggaaacc ctggagcgac tgcagcgtag gtatggggga ggactggtca gagtgccact 8281 ctcccgcaac tctacacatg agatgtactg ggtctctgga gcgaaaagca acaccataaa 8341 aagtgtgtcc accacgagcc agctcctctt ggggcgcatg gacgggccta ggaggccagt 8401 gaaatatgag gaggacgtga atctcggctc tggcacgcgg gctgtggtaa gctgcgctga 8461 agctcccaac atgaagatca ttggtaaccg cattgaaagg atccgcagtg agcacgcgga 8521 aacgtggttc tttgacgaga accacccata taggacatgg gcttaccatg gaagctatga 8581 ggcccccaca caagggtcag catcctctct agtaaacggg gttgtcaggc tcctgtcaaa 8641 accctgggat gtggtgactg gagtcacagg aatagccatg accgacacca caccgtatgg 8701 tcagcaaaga gttttcaagg aaaaagtgga cactagggtg ccagaccccc aagaaggcac 8761 tcgtcaggtt atgagcatgg tctcttcctg gttgtggaaa gagctaggca aacacaaacg 8821 gccacgagtc tgtaccaaag aagagttcat caacaaggtt cgtagcaatg cagcattagg 8881 ggcaatattt gaagaggaaa aagagtggaa gactgcagtg gaagctgtga acgatccaag 8941 gttctgggct ctagtggaca aggaaagaga gcaccacctg agaggagagt gccagagttg 9001 tgtgtacaac atgatgggaa aaagagaaaa gaaacaaggg gaatttggaa aggccaaggg 9061 cagccgcgcc atctggtata tgtggctagg ggctagattt ctagagttcg aagcccttgg 9121 attcttgaac gaggatcact ggatggggag agagaactca ggaggtggtg ttgaagggct 9181 gggattacaa agactcggat atgtcctaga agagatgagt cgcataccag gaggaaggat 9241 gtatgcagat gacactgctg gctgggatac ccgcatcagc aggtttgatc tagagaatga 9301 agctctaatc accaaccaaa tggagaaagg gcacagggcc ttggcattgg ccataatcaa 9361 gtacacatac caaaacaaag tggtaaaggt ccttagacca gctgaaaaag ggaaaacagt 9421 tatggacatt atttcgagac aagaccaaag ggggagcgga caagttgtca cttacgctct 9481 taacacattt accaacctag tggtgcaact cattcggaat atggaggctg aggaagttct 9541 agagatgcaa gacttgtggc tgctgcggag gtcagagaaa gtgaccaact ggttgcagag 9601 caacggatgg gataggctca aacgaatggc agtcagtgga gatgattgcg ttgtgaagcc 9661 aattgatgat aggtttgcac atgccctcag gttcttgaat gatatgggaa aagttaggaa 9721 ggacacacaa gagtggaaac cctcaactgg atgggacaac tgggaagaag ttccgttttg 9781 ctcccaccac ttcaacaagc tccatctcaa ggacgggagg tccattgtgg ttccctgccg 9841 ccaccaagat gaactgattg gtcgggcccg cgtctctcca ggggcgggat ggagcatccg 9901 ggagactgct tgcctagcaa aatcatatgc gcaaatgtgg cagctccttt atttccacag 9961 aagggacctc cgactgatgg ccaatgccat ttgttcatct gtgccagttg actgggttcc 10021 aactgggaga actacctggt caatccatgg aaagggagaa tggatgacca ttgaagacat 10081 gcttgtggtg tggaacagag tgtggattga ggagaacgac cacatggaag acaagacccc 10141 agttacgaaa tggacagaca ttccctattt gggaaaaagg gaagacttgt ggtgtggatc 10201 tctcataggg cacagaccgc gcaccacctg ggctgagaac attaaaaaca cagtcaacat 10261 ggtgcgcagg atcataggtg aggaagaaaa gtacatggac tacctatcca cccaagtccg 10321 ctacttgggt gaagaagggt ctacacctgg agtgctgtaa gcaccaatct taatgttgtc 10381 aggcctgcta gtcagccaca gcttggggaa agctgtgcag cctgtgaccc ccccaggaga 10441 agctgggaaa ccaagcctat agtcaggccg agaacgccat ggcacggaag aagccatgct 10501 gcctgtgagc ccctcagagg acactgagtc aaaaaacccc acgcgcttgg aggcgcagga 10561 tgggaaaaga aggtggcgac cttccccacc cttcaatctg gggcctgaac tggagatcag 10621 ctgtggatct ccagaagagg gactag Link to comment Share on other sites More sharing options...
niman Posted October 24, 2016 Author Report Share Posted October 24, 2016 Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KY014323.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-02-MOS polyprotein gene, complete cds 18525 18525 100% 0.0 100% KY014323.1 Select seq gb|KX838905.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds 18525 18525 100% 0.0 100% KX838905.2 Select seq gb|KY014295.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-010-URI polyprotein gene, complete cds 18511 18511 100% 0.0 99% KY014295.1 Select seq gb|KX842449.2| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds 18511 18511 100% 0.0 99% KX842449.2 Select seq gb|KX922703.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds 18507 18507 100% 0.0 99% KX922703.1 Select seq gb|KX832731.1| Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds 18498 18498 100% 0.0 99% KX832731.1 Select seq gb|KX922706.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds 18494 18494 100% 0.0 99% KX922706.1 Select seq gb|KX922704.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds 18493 18493 100% 0.0 99% KX922704.1 Select seq gb|KX838904.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds 18487 18487 100% 0.0 99% KX838904.2 Select seq gb|KY014324.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-01-MOS polyprotein gene, complete cds 18484 18484 100% 0.0 99% KY014324.1 Select seq gb|KY014304.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0180-SER polyprotein gene, complete cds 18447 18447 100% 0.0 99% KY014304.1 Select seq gb|KY014300.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0208-SER polyprotein gene, complete cds 18447 18447 100% 0.0 99% KY014300.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 18444 18444 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 18442 18442 100% 0.0 99% KU853012.1 Select seq dbj|LC190723.1| Zika virus genomic RNA, complete genome, strain: ZIKV/Hu/Yokohama/1/2016 18438 18438 100% 0.0 99% LC190723.1 Select seq gb|KY014321.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0115-SER polyprotein gene, complete cds 18435 18435 100% 0.0 99% KY014321.1 Select seq gb|KX922707.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds 18420 18420 100% 0.0 99% KX922707.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 18420 18420 100% 0.0 99% KX673530.1 Select seq gb|KY014322.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-03-MOS polyprotein gene, complete cds 18417 18417 100% 0.0 99% KY014322.1 Select seq gb|KY014314.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0436-SER polyprotein gene, complete cds 18417 18417 100% 0.0 99% KY014314.1 Select seq gb|KX838906.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds 18417 18417 100% 0.0 99% KX838906.2 Select seq gb|KY014316.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-039-URI polyprotein gene, complete cds 18413 18413 100% 0.0 99% KY014316.1 Select seq gb|KX922705.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds 18404 18404 100% 0.0 99% KX922705.1 Select seq gb|KX922708.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds 18399 18399 100% 0.0 99% KX922708.1 Select seq gb|KY014299.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-04-MOS polyprotein gene, complete cds 18393 18393 100% 0.0 99% KY014299.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 18354 18354 100% 0.0 99% KX447510.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 18348 18348 100% 0.0 99% KX280026.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 18345 18345 100% 0.0 99% KX447512.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 18345 18345 100% 0.0 99% KX369547.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 18345 18345 100% 0.0 99% KU509998.3 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 18339 18339 100% 0.0 99% KJ776791.2 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 18339 18339 100% 0.0 99% KX447509.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 18339 18339 100% 0.0 99% KU991811.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 18339 18339 100% 0.0 99% KU729217.2 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 18336 18336 100% 0.0 99% KX447513.1 Select seq gb|KX811222.1| Zika virus isolate Brazil_2015_MG, complete genome 18330 18330 100% 0.0 99% KX811222.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 18330 18330 100% 0.0 99% KX197205.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 18330 18330 100% 0.0 99% KX447515.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 18330 18330 100% 0.0 99% KX447511.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 18330 18330 100% 0.0 99% KU321639.1 Select seq gb|KX879604.1| Zika virus isolate SN089, complete genome 18327 18327 100% 0.0 99% KX879604.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 18327 18327 100% 0.0 99% KX447514.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 18327 18327 100% 0.0 99% KX051563.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 18321 18321 100% 0.0 99% KX447516.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 18321 18321 100% 0.0 99% KU729218.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 18321 18321 100% 0.0 99% KU707826.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 18321 18321 100% 0.0 99% KU527068.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 18321 18321 100% 0.0 99% KU365779.1 Select seq gb|KX879603.1| Zika virus isolate SN062, complete genome 18318 18318 100% 0.0 99% KX879603.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 18318 18318 100% 0.0 99% KX262887.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 18318 18318 100% 0.0 99% KX197192.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 18318 18318 100% 0.0 99% KU926310.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 18318 18318 100% 0.0 99% KU926309.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 18312 18312 100% 0.0 99% KU940228.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 18309 18309 100% 0.0 99% KX694534.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 18309 18309 100% 0.0 99% KX198135.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 18309 18309 100% 0.0 99% KU501217.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 18309 18309 100% 0.0 99% KU365780.1 Select seq gb|KY014303.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0127-SER polyprotein gene, complete cds 18303 18303 100% 0.0 99% KY014303.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 18303 18303 100% 0.0 99% KU647676.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 18303 18303 100% 0.0 99% KU501216.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 18303 18303 100% 0.0 99% KU365777.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 18300 18300 100% 0.0 99% KX447517.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 18300 18300 100% 0.0 99% KU758877.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 18300 18300 100% 0.0 99% KX247646.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 18300 18300 100% 0.0 99% KX156776.1 Select seq gb|KY014297.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-6864-URI polyprotein gene, complete cds 18298 18298 100% 0.0 99% KY014297.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 18296 18296 99% 0.0 99% KU497555.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 18294 18294 100% 0.0 99% KX520666.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 18294 18294 100% 0.0 99% KX156774.1 Select seq gb|KY014327.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME167-PLA polyprotein gene, complete cds 18292 18292 100% 0.0 99% KY014327.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 18291 18291 100% 0.0 99% KU820897.5 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 18291 18291 100% 0.0 99% KX247632.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 18291 18291 100% 0.0 99% KX156775.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 18291 18291 100% 0.0 99% KX087102.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 18291 18291 100% 0.0 99% KU365778.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 18291 18291 100% 0.0 99% KU312312.1 Select seq gb|KY014315.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME152-SER polyprotein gene, complete cds 18287 18287 100% 0.0 99% KY014315.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 18285 18285 100% 0.0 99% KU922960.1 Select seq gb|KY014296.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ131D1-URI polyprotein gene, complete cds 18282 18282 100% 0.0 99% KY014296.1 Select seq gb|KX806557.2| Zika virus isolate TS17-2016, complete genome 18282 18282 100% 0.0 99% KX806557.2 Select seq gb|KX856011.1| Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome 18282 18282 100% 0.0 99% KX856011.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 18282 18282 100% 0.0 99% KX548902.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 18282 18282 100% 0.0 99% KX446951.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 18282 18282 100% 0.0 99% KU937936.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 18282 18282 100% 0.0 99% KU922923.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 18282 18282 100% 0.0 99% KU501215.1 Select seq gb|KX893855.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-2/2016, complete genome 18276 18276 100% 0.0 99% KX893855.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 18276 18276 100% 0.0 99% KX601168.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 18276 18276 100% 0.0 99% KX446950.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 18276 18276 100% 0.0 99% KX087101.2 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 18276 18276 100% 0.0 99% KU870645.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 18273 18273 100% 0.0 99% KX702400.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 18273 18273 100% 0.0 99% KX377337.1 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 18264 18264 100% 0.0 99% KX766029.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 18264 18264 100% 0.0 99% KU820898.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 18258 18258 100% 0.0 99% KX056898.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 18258 18258 100% 0.0 99% KU955590.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 18256 18256 100% 0.0 99% KX766028.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 18254 18254 100% 0.0 99% KU740184.2 Link to comment Share on other sites More sharing options...
niman Posted October 24, 2016 Author Report Share Posted October 24, 2016 LOCUS KY014322 10659 bp RNA linear VRL 21-OCT-2016 DEFINITION Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-03-MOS polyprotein gene, complete cds. ACCESSION KY014322 VERSION KY014322.1 DBLINK BioProject: PRJNA344504 BioSample: SAMN05761898 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10659) AUTHORS Baniecki,M.L., Barnes,K.G., Bosch,I., Freije,C.A., Gehrke,L., Gladden-Young,A.D., Gnirke,A., Isern,S., Luo,C.Y., MacInnis,B., Matranga,C.B., Metsky,H.C., Michael,S., Park,D.J., Paul,L., Porcelli,M., Qu,J., Sabeti,P.C., Tomkins-Tinch,C.H., Vasquez,C., West,K.L., Winnicki,S., Wohl,S. and Yozwiak,N.L. TITLE Direct Submission JOURNAL Submitted (20-OCT-2016) Viral Genomics, Infectious Disease Program (Infectious Disease Initiative), Broad Institute, 75 Ames St, Cambridge, MA 02142, USA COMMENT ##Assembly-Data-START## Assembly Method :: github.com/broadinstitute/viral-ngs v. v1.11.0-119-g0edb62f-dirty Assembly Name :: USA_2016_FL-03_MOS-1 Coverage :: 1331x Sequencing Technology :: Illumina; Swift LC ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10659 /organism="Zika virus" /mol_type="genomic RNA" /isolate="Zika virus/A.aegypti-wt/USA/2016/FL-03-MOS" /isolation_source="pool of 40 female mosquitos" /host="Aedes aegypti" /db_xref="taxon:64320" /country="USA: Miami, FL" /collection_date="23-Aug-2016" /collected_by="Miami-Dade Mosquito Control" 5'UTR <1..88 CDS 89..10360 /note="contains structural and nonstructural proteins" /codon_start=1 /product="polyprotein" /protein_id="AOY08543.1" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSVVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRNGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLVNGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTIEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGEEEKYMDYLST QVRYLGEEGSTPGVL" 3'UTR 10361..10659 ORIGIN 1 tcagactgcg acagttcgag tttgaagcga aagctagcaa cagtatcaac aggttttatt 61 ttggatttgg aaacgagagt ttctggtcat gaaaaaccca aaaaagaaat ccggaggatt 121 ccggattgtc aatatgctaa aacgcggagt agcccgtgtg agcccctttg ggggcttgaa 181 gaggctgcca gccggacttc tgctgggtca tgggcccatc aggatggtct tggcgattct 241 agcctttttg agattcacgg caatcaagcc atcactgggt ctcatcaata gatggggttc 301 agtggggaaa aaagaggcta tggaaataat aaagaagttc aagaaagatc tggctgccat 361 gctgagaata atcaatgcta ggaaggagaa gaagagacga ggcgcagata ctagtgtcgg 421 aattgttggc ctcctgctga ccacagctat ggcagcggag gtcactagac gtgggagtgc 481 atactacatg tacttggaca gaaacgatgc tggggaggcc atatcttttc caaccacatt 541 ggggatgaat aagtgttata tacagatcat ggatcttgga cacatgtgtg atgccaccat 601 gagctatgaa tgccctatgc tggatgaggg ggtggaacca gatgacgtcg attgttggtg 661 caacacgacg tcaacttggg ttgtgtacgg aacctgccat cacaaaaaag gtgaagcacg 721 gagatctaga agagctgtga cgctcccctc ccattccact aggaagctgc aaacgcggtc 781 gcaaacctgg ttggaatcaa gagaatacac aaagcacttg attagagtcg aaaattggat 841 attcaggaac cctggcttcg cgttagcagc agctgccatc gcttggcttt tgggaagctc 901 aacgagccaa aaagtcatat acttggtcat gatactgctg attgccccgg catacagcat 961 caggtgcata ggagtcagca atagggactt tgtggaaggt atgtcaggtg ggacttgggt 1021 tgatgttgtc ttggaacatg gaggttgtgt caccgtaatg gcacaggaca aaccgactgt 1081 cgacatagag ctggttacaa caacagtcag caacatggcg gaggtaagat cctactgcta 1141 tgaggcatca atatcagaca tggcttcgga cagccgctgc ccaacacaag gtgaagccta 1201 ccttgacaag caatcagaca ctcaatatgt ctgcaaaaga acgttagtgg acagaggctg 1261 gggaaatgga tgtggacttt ttggcaaagg gagcctggtg acatgcgcta agtttgcatg 1321 ctccaagaaa atgaccggga agagcatcca gccagagaat ctggagtacc ggataatgct 1381 gtcagttcat ggctcccagc acagtgggat gatcgttaat gacacaggac atgaaactga 1441 tgagaataga gcgaaggttg agataacgcc caattcacca agagccgaag ccaccctggg 1501 gggttttgga agcctaggac ttgattgtga accgaggaca ggccttgact tctcagattt 1561 gtattacttg actatgaata acaagcactg gttggttcac aaggagtggt tccacgacat 1621 tccattacct tggcacgctg gggcagacac cggaactcca cactggaaca acaaagaagc 1681 actggtagag ttcaaggacg cacatgccaa aaggcaaact gtcgtggttc tagggagtca 1741 agaaggagca gttcacacgg cccttgctgg agctctggag gctgagatgg atggtgcaaa 1801 gggaaggctg tcctctggcc acttgaaatg tcgcctgaaa atggataaac ttagattgaa 1861 gggcgtgtca tactccttgt gtaccgcagc gttcacattc accaagatcc cggctgaaac 1921 actgcacggg acagtcacag tggaggtaca gtacgcaggg acagatggac cttgcaaggt 1981 tccagctcag atggcggtgg acatgcaaac tctgacccca gttgggaggt tgataaccgc 2041 caaccccgta atcactgaaa gcactgagaa ctctaagatg atgctggaac ttgatccacc 2101 atttggggac tcttacattg tcataggagt cggggagaag aagatcaccc accactggca 2161 caggagtggc agcaccattg gaaaagcatt tgaagccact gtgagaggtg ccaagagaat 2221 ggcagtcttg ggagacacag cctgggactt tggatcagtt ggaggcgctc tcaactcatt 2281 gggcaagggc atccatcaaa tttttggagc agctttcaaa tcattgtttg gaggaatgtc 2341 ctggttctca caaatcctca ttggaacgtt gctgatgtgg ttgggtctga acacaaagaa 2401 tggatctatt tccctcatgt gcttggcctt agggggagtg ctgatcttct tatccacagc 2461 cgtctctgct gatgtggggt gctcggtgga cttctcaaag aaggagacga gatgcggtac 2521 aggggtgttc gtctataacg acgttgaagc ctggagggac aggtacaagt accatcctga 2581 ctccccccgt agattggcag cagcagtcaa gcaagcctgg gaagatggta tctgcgggat 2641 ctcctctgtt tcaagaatgg aaaacatcat gtggagatca gtagaagggg agctcaatgc 2701 aatcctggaa gagaatggag ttcaactgac ggtcgttgtg ggatctgtaa aaaaccccat 2761 gtggagaggt ccacagagat tgcccgtgcc tgtgaacgag ctgccccacg gctggaaggc 2821 ttgggggaaa tcgtacttcg ttagagcagc aaagacaaat aacagctttg tcgtggatgg 2881 tgacacactg aaggaatgcc cactcaaaca tagagcatgg aacagctttc ttgtggagga 2941 tcatgggttc ggggtattcc acactagtgt ctggctcaag gttagagaag attattcatt 3001 agagtgtgat ccagccgtta ttggaacagc tgttaaggga aaggaggctg tacacagtga 3061 tctaggctac tggattgaga gtgagaagaa tgacacatgg aggctgaaga gggcccatct 3121 gatcgagatg aaaacatgtg aatggccaaa gtcccacaca ttgtggacag atggaataga 3181 agagagtgat ctgatcatac ccaagtcttt agctgggcca ctcagccatc acaataccag 3241 agagggctac aggacccaaa tgaaagggcc atggcacagt gaagagcttg aaattcggtt 3301 tgaggaatgc ccaggcacta aggtccacgt ggaggaaaca tgtggaacaa gaggaccatc 3361 tctgagatca accactgcaa gcggaagggt gatcgaggaa tggtgctgca gggagtgcac 3421 aatgccccca ctgtcgttcc gggctaaaga tggctgttgg tatggaatgg agataaggcc 3481 caggaaagaa ccagaaagca acttagtaag gtcagtggtg actgcaggat caactgatca 3541 catggatcac ttctcccttg gagtgcttgt gattctgctc atggtgcagg aagggctgaa 3601 gaagagaatg accacaaaga tcatcataag cacatcaatg gcagtgctgg tagctatgat 3661 cctgggagga ttttcaatga gtgacctggc taagcttgca attttgatgg gtgccacctt 3721 cgcggaaatg aacactggag gagatgtagc tcatctggcg ctgatagcgg cattcaaagt 3781 cagaccagcg ttgctggtat ctttcatctt cagagctaat tggacacccc gtgaaagcat 3841 gctgctggcc ttggcctcgt gtcttttgca aactgcgatc tccgccttgg aaggcgacct 3901 gatggttctc atcaatggtt ttgctttggc ctggttggca atacgagcga tggttgttcc 3961 acgcactgat aacatcacct tggcaatcct ggctgctctg acaccactgg cccggggcac 4021 actgcttgtg gcgtggagag caggccttgc tacttgcggg gggtttatgc tcctctctct 4081 gaagggaaaa ggcagtgtga agaagaactt accatttgtc atggccctgg gactaaccgc 4141 tgtgagactg gtcgacccca tcaacgtggt gggactgctg ttgctcacaa ggaatgggaa 4201 gcggagctgg ccccctagcg aagtactcac agctgttggc ctgatatgcg cattggctgg 4261 agggttcgcc aaggcagata tagagatggc tgggcccatg gccgcggtcg gtctgctaat 4321 tgtcagttac gtggtctcag gaaagagtgt ggacatgtac attgaaagag caggtgacat 4381 cacatgggaa aaagatgcgg aagtcactgg aaacagtccc cggctcgatg tggcgctaga 4441 tgagagtggt gatttctccc tggtggagga tgacggtccc cccatgagag agatcatact 4501 caaggtggtc ctgatgacca tctgtggcat gaacccaata gccataccct ttgcagctgg 4561 agcgtggtac gtatacgtga agactggaaa aaggagtggt gctctatggg atgtgcctgc 4621 tcccaaggaa gtaaaaaagg gggagaccac agatggagtg tacagagtaa tgactcgtag 4681 actgctaggt tcaacacaag ttggagtggg agttatgcaa gagggggtct ttcacactat 4741 gtggcacgtc acaaaaggat ccgcgctgag aagcggtgaa gggagacttg atccatactg 4801 gggagatgtc aagcaggatc tggtgtcata ctgtggtcca tggaagctag atgccgcctg 4861 ggacgggcac agcgaggtgc agctcttggc cgtgcccccc ggagagagag cgaggaacat 4921 ccagactctg cccggaatat ttaagacaaa ggatggggac attggagcgg ttgcgctgga 4981 ttacccagca ggaacttcag gatctccaat cctagacaag tgtgggagag tgataggact 5041 ttatggcaat ggggtcgtga tcaaaaatgg gagttatgtt agtgccatca cccaagggag 5101 gagggaggaa gagactcctg ttgagtgctt cgagccttcg atgctgaaga agaagcagct 5161 aactgtctta gacttgcacc ctggagctgg gaaaaccagg agagttcttc ctgaaatagt 5221 ccgtgaagct ataaaaacaa gactccgtac tgtgatctta gctccaacca gggttgtcgc 5281 tgctgaaatg gaggaagccc ttagagggct tccagtgcgt tatatgacaa cagcagtcaa 5341 tgtcacccat tctggaacag aaatcgtcga cttaatgtgc catgccacct tcacttcacg 5401 tctactacag ccaatcagag tccccaacta taatctgtat attatggatg aggcccactt 5461 cacagatccc tcaagtatag cagcaagagg atacatttca acaagggttg agatgggcga 5521 ggcggctgcc atcttcatga ccgccacgcc accaggaacc cgtgacgcat ttccggactc 5581 caactcacca attatggaca ccgaagtgga agtcccagag agagcctgga gctcaggctt 5641 tgattgggtg acggatcatt ctggaaaaac agtttggttt gttccaagcg tgaggaacgg 5701 caatgagatc gcagcttgtc tgacaaaggc tggaaaacgg gtcatacagc tcagcagaaa 5761 gacttttgag acagagttcc agaaaacaaa acatcaagag tgggactttg tcgtgacaac 5821 cgacatttca gagatgggcg ccaactttaa agctgaccgt gtcatagatt ccaggagatg 5881 cctaaagccg gtcatacttg atggcgagag agtcattctg gctggaccca tgcctgtcac 5941 acatgccagc gctgcccaga ggagggggcg cataggcagg aatcccaaca aacctggaga 6001 tgagtatctg tatggaggtg ggtgcgcaga gactgacgaa gaccatgcac actggcttga 6061 agcaagaatg ctccttgaca atatttacct ccaagatggc ctcatagcct cgctctatcg 6121 acctgaggcc gacaaagtag cagccattga gggagagttc aagcttagga cggagcaaag 6181 gaagaccttt gtggaactca tgaaaagagg agatcttcct gtttggctgg cctatcaggt 6241 tgcatctgcc ggaataactt acacagatag aagatggtgc tttgatggca cgaccaacaa 6301 caccataatg gaagacagtg tgccggcaga ggtgtggacc agacacggag agaaaagagt 6361 gctcaaaccg aggtggatgg acgccagagt ttgttcagat catgcggccc tgaagtcatt 6421 caaggagttt gccgctggga aaagaggagc ggcttttgga gtgatggaag ccctgggaac 6481 actgccagga cacatgacag agagattcca ggaagccatt gacaacctcg ctgtgctcat 6541 gcgggcagag actggaagca ggccttacaa agccgcggcg gcccaattgc cggagaccct 6601 agagaccatt atgcttttgg ggttgctggg aacagtctcg ctgggaatct ttttcgtctt 6661 gatgaggaac aagggcatag ggaagatggg ctttggaatg gtgactcttg gggccagcgc 6721 atggctcatg tggctctcgg aaattgagcc agccagaatt gcatgtgtcc tcattgttgt 6781 gttcctattg ctggtggtgc tcatacctga gccagaaaag caaagatctc cccaggacaa 6841 ccaaatggca atcatcatca tggtagcagt aggtcttctg ggcttgatca ccgccaatga 6901 actcggatgg ttggagagaa caaagagtga cctaagccat ctaatgggaa ggagagagga 6961 gggagcaacc ataggattct caatggacat tgacctgcgg ccagcctcag cttgggccat 7021 ctatgctgcc ttgacaactt tcattacccc agccgtccaa catgcagtga ccacttcata 7081 caacaactac tccttaatgg cgatggccac gcaagctgga gtgttgtttg gtatgggcaa 7141 agggatgcca ttctacgcat gggactttgg agtcccgctg ctaatgatag gttgctactc 7201 acaattaaca cccctgaccc taatagtggc catcattttg ctcgtggcgc actacatgta 7261 cttgatccca gggctgcagg cagcagctgc gcgtgctgcc cagaagagaa cggcagctgg 7321 catcatgaag aaccctgttg tggatggaat agtggtgact gacattgaca caatgacaat 7381 tgacccccaa gtggagaaaa agatgggaca ggtgctactc atagcagtag ccgtctccag 7441 cgccatactg tcgcggaccg cctgggggtg gggggaggct ggggccctga tcacagccgc 7501 aacttccact ttgtgggaag gctctccgaa caagtactgg aactcctcta cagccacttc 7561 actgtgtaac atttttaggg ggagttactt ggctggagct tctctaatct acacagtaac 7621 aagaaacgct ggcttggtca agagacgtgg gggtggaaca ggagagaccc tgggagagaa 7681 atggaaggcc cgcttgaacc agatgtcggc cctggagttc tactcctaca aaaagtcagg 7741 catcaccgag gtgtgcagag aagaggcccg ccgcgccctc aaggacggtg tggcaacggg 7801 aggccatgct gtgtcccgag gaagtgcaaa gctgagatgg ttggtggagc ggggatacct 7861 gcagccctat ggaaaggtca ttgatcttgg atgtggcaga gggggctgga gttactacgc 7921 cgccaccatc cgcaaagttc aagaagtgaa aggatacaca aaaggaggcc ctggtcatga 7981 agaacctgtg ttggtgcaaa gctatgggtg gaacatagtc cgtctcaaga gtggggtgga 8041 cgtctttcat atggcggctg agccgtgtga cacgttgctg tgtgacatag gtgagtcatc 8101 atctagtcct gaagtggaag aagcacggac gctcagagtc ctctccatgg tgggggattg 8161 gcttgaaaaa agaccaggag ccttttgtat aaaagtgttg tgcccataca ccagcactat 8221 gatggaaacc ttggagcggc tgcagcgtag gtatggggga ggactggtca gagtgccact 8281 ctcccgcaac tctacacatg agatgtactg ggtctctgga gcgaaaagca acaccataaa 8341 aagtgtgtcc accacgagcc agctcctctt ggggcgcatg gacgggccta ggaggccagt 8401 gaaatatgag gaggatgtga atctcggctc tggcacgcgg gctgtggtaa gctgcgctga 8461 agctcccaac atgaagatca ttggtaaccg cattgaaagg atccgcagtg agcacgcgga 8521 aacgtggttc tttgacgaga accacccata taggacatgg gcttaccatg gaagctatga 8581 ggcccctaca caagggtcag catcctctct agtaaacggg gttgtcaggc tcctgtcaaa 8641 accctgggat gtggtgactg gagtcacagg aatagccatg accgacacca caccgtatgg 8701 tcagcaaaga gttttcaagg aaaaagtgga cactagggtg ccagaccccc aagaaggcac 8761 tcgtcaggtt atgagcatgg tctcttcctg gttgtggaaa gagctaggca aacacaaacg 8821 gccacgagtc tgcaccaaag aagagttcat caacaaggtt cgtagcaatg cagcattagg 8881 ggcaatattt gaagaggaaa aagagtggaa gactgcagtg gaagctgtga acgatccaag 8941 gttctgggct ctagtggaca aggaaagaga gcaccacctg agaggagagt gccagagttg 9001 tgtgtacaac atgatgggaa aaagagaaaa gaaacaaggg gaatttggaa aggccaaggg 9061 cagccgcgcc atctggtata tgtggctagg ggctagattt ctagagttcg aagcccttgg 9121 attcttgaac gaggatcact ggatggggag agagaactca ggaggtggtg ttgaagggct 9181 gggattacaa agactcggat atgtcctaga agagatgagt cgcataccag gaggaaggat 9241 gtatgcagat gacactgctg gctgggatac ccgcatcagc aggtttgatc tagagaatga 9301 agctctaatc accaaccaaa tggagaaagg gcacagggcc ttggcattgg ccataatcaa 9361 gtacacatac caaaataaag tggtaaaggt ccttagacca gctgaaaaag ggaaaacagt 9421 tatggacatt atttcgagac aagaccaaag ggggagcgga caagttgtca cttacgctct 9481 taacacattt accaacctag tggtgcaact cattcggaat atggaggctg aggaagttct 9541 agagatgcaa gacttgtggc tgctgcggag gtcagagaaa gtgaccaact ggttgcagag 9601 caacggatgg gataggctca aacgaatggc agtcagtgga gatgattgcg ttgtgaagcc 9661 aattgatgat aggtttgcac atgccctcag gttcttgaat gatatgggaa aagttaggaa 9721 ggacacacaa gagtggaaac cctcaactgg atgggacaac tgggaagaag ttccgttttg 9781 ctcccaccac ttcaacaagc tccatctcaa ggacgggagg tccattgtgg ttccctgccg 9841 ccaccaagat gaactgattg gccgggcccg cgtctctcca ggggcgggat ggagcatccg 9901 ggagactgct tgcctagcaa aatcatatgc gcaaatgtgg cagctccttt atttccacag 9961 aagggacctc cgactgatgg ccaatgccat ttgttcatct gtgccagttg actgggttcc 10021 aactgggaga actacctggt caatccatgg aaagggagaa tggatgacca ttgaagacat 10081 gcttgtggtg tggaacagag tgtggattga ggagaacgac cacatggaag acaagacccc 10141 agttacgaaa tggacagaca ttccctattt gggaaaaagg gaagacttgt ggtgtggatc 10201 tctcataggg cacagaccgc gcaccacctg ggctgagaac attaaaaaca cagtcaacat 10261 ggtgcgcagg atcataggtg aggaagaaaa gtacatggac tacctatcca cccaagttcg 10321 ctacttgggt gaagaagggt ctacacctgg agtgctgtaa gcaccaatct taatgttgtc 10381 aggcctgcta gtcagccaca gcttggggaa agctgtgcag cctgtgaccc ccccaggaga 10441 agctgggaaa ccaagcctat agtcaggccg agaacgccat ggcacggaag aagccatgct 10501 gcctgtgagc ccctcagagg acactgagtc aaaaaacccc acgcgcttgg aggcgcagga 10561 tgggaaaaga aggtggcgac cttccccacc cttcaatctg gggcctgaac tggagatcag 10621 ctgtggatct ccagaagagg gactagtggt tagaggaga Link to comment Share on other sites More sharing options...
niman Posted October 24, 2016 Author Report Share Posted October 24, 2016 Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KY014322.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-03-MOS polyprotein gene, complete cds 18525 18525 100% 0.0 100% KY014322.1 Select seq gb|KX838906.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds 18525 18525 100% 0.0 100% KX838906.2 Select seq gb|KX922705.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds 18503 18503 100% 0.0 99% KX922705.1 Select seq gb|KX922708.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds 18498 18498 100% 0.0 99% KX922708.1 Select seq gb|KY014299.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-04-MOS polyprotein gene, complete cds 18493 18493 100% 0.0 99% KY014299.1 Select seq gb|KY014304.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0180-SER polyprotein gene, complete cds 18447 18447 100% 0.0 99% KY014304.1 Select seq gb|KY014300.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0208-SER polyprotein gene, complete cds 18438 18438 100% 0.0 99% KY014300.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 18438 18438 100% 0.0 99% KX673530.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 18435 18435 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 18433 18433 100% 0.0 99% KU853012.1 Select seq gb|KY014295.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-010-URI polyprotein gene, complete cds 18429 18429 100% 0.0 99% KY014295.1 Select seq dbj|LC190723.1| Zika virus genomic RNA, complete genome, strain: ZIKV/Hu/Yokohama/1/2016 18429 18429 100% 0.0 99% LC190723.1 Select seq gb|KX842449.2| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds 18429 18429 100% 0.0 99% KX842449.2 Select seq gb|KY014321.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0115-SER polyprotein gene, complete cds 18426 18426 100% 0.0 99% KY014321.1 Select seq gb|KY014323.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-02-MOS polyprotein gene, complete cds 18417 18417 100% 0.0 99% KY014323.1 Select seq gb|KX922703.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds 18417 18417 100% 0.0 99% KX922703.1 Select seq gb|KX838905.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds 18417 18417 100% 0.0 99% KX838905.2 Select seq gb|KX832731.1| Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds 18417 18417 100% 0.0 99% KX832731.1 Select seq gb|KX922706.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds 18413 18413 100% 0.0 99% KX922706.1 Select seq gb|KX922707.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds 18411 18411 100% 0.0 99% KX922707.1 Select seq gb|KX922704.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds 18411 18411 100% 0.0 99% KX922704.1 Select seq gb|KY014314.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0436-SER polyprotein gene, complete cds 18408 18408 100% 0.0 99% KY014314.1 Select seq gb|KX838904.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds 18406 18406 100% 0.0 99% KX838904.2 Select seq gb|KY014316.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-039-URI polyprotein gene, complete cds 18404 18404 100% 0.0 99% KY014316.1 Select seq gb|KY014324.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-01-MOS polyprotein gene, complete cds 18402 18402 100% 0.0 99% KY014324.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 18345 18345 100% 0.0 99% KX447510.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 18339 18339 100% 0.0 99% KX280026.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 18339 18339 100% 0.0 99% KU729217.2 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 18336 18336 100% 0.0 99% KX447512.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 18336 18336 100% 0.0 99% KX369547.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 18336 18336 100% 0.0 99% KU509998.3 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 18330 18330 100% 0.0 99% KJ776791.2 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 18330 18330 100% 0.0 99% KX447509.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 18330 18330 100% 0.0 99% KU991811.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 18327 18327 100% 0.0 99% KX447513.1 Select seq gb|KX811222.1| Zika virus isolate Brazil_2015_MG, complete genome 18321 18321 100% 0.0 99% KX811222.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 18321 18321 100% 0.0 99% KX197205.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 18321 18321 100% 0.0 99% KX447515.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 18321 18321 100% 0.0 99% KX447511.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 18321 18321 100% 0.0 99% KU321639.1 Select seq gb|KX879604.1| Zika virus isolate SN089, complete genome 18318 18318 100% 0.0 99% KX879604.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 18318 18318 100% 0.0 99% KX447514.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 18318 18318 100% 0.0 99% KX051563.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 18312 18312 100% 0.0 99% KX447516.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 18312 18312 100% 0.0 99% KU729218.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 18312 18312 100% 0.0 99% KU707826.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 18312 18312 100% 0.0 99% KU527068.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 18312 18312 100% 0.0 99% KU365779.1 Select seq gb|KX879603.1| Zika virus isolate SN062, complete genome 18309 18309 100% 0.0 99% KX879603.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 18309 18309 100% 0.0 99% KX262887.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 18309 18309 100% 0.0 99% KX197192.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 18309 18309 100% 0.0 99% KU926310.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 18309 18309 100% 0.0 99% KU926309.1 Select seq gb|KY014303.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0127-SER polyprotein gene, complete cds 18303 18303 100% 0.0 99% KY014303.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 18303 18303 100% 0.0 99% KU940228.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 18300 18300 100% 0.0 99% KX694534.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 18300 18300 100% 0.0 99% KX198135.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 18300 18300 100% 0.0 99% KU501217.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 18300 18300 100% 0.0 99% KU365780.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 18294 18294 100% 0.0 99% KU647676.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 18294 18294 100% 0.0 99% KU501216.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 18294 18294 100% 0.0 99% KU365777.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 18291 18291 100% 0.0 99% KX447517.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 18291 18291 100% 0.0 99% KU758877.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 18291 18291 100% 0.0 99% KX247646.1 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 18291 18291 100% 0.0 99% KX247632.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 18291 18291 100% 0.0 99% KX156776.1 Select seq gb|KY014297.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-6864-URI polyprotein gene, complete cds 18289 18289 100% 0.0 99% KY014297.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 18287 18287 99% 0.0 99% KU497555.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 18285 18285 100% 0.0 99% KX520666.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 18285 18285 100% 0.0 99% KX156774.1 Select seq gb|KY014327.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME167-PLA polyprotein gene, complete cds 18283 18283 100% 0.0 99% KY014327.1 Select seq gb|KX856011.1| Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome 18282 18282 100% 0.0 99% KX856011.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 18282 18282 100% 0.0 99% KU820897.5 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 18282 18282 100% 0.0 99% KX446951.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 18282 18282 100% 0.0 99% KX156775.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 18282 18282 100% 0.0 99% KX087102.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 18282 18282 100% 0.0 99% KU501215.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 18282 18282 100% 0.0 99% KU365778.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 18282 18282 100% 0.0 99% KU312312.1 Select seq gb|KY014315.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME152-SER polyprotein gene, complete cds 18278 18278 100% 0.0 99% KY014315.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 18276 18276 100% 0.0 99% KX601168.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 18276 18276 100% 0.0 99% KX446950.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 18276 18276 100% 0.0 99% KX087101.2 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 18276 18276 100% 0.0 99% KU922960.1 Select seq gb|KY014296.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ131D1-URI polyprotein gene, complete cds 18273 18273 100% 0.0 99% KY014296.1 Select seq gb|KX806557.2| Zika virus isolate TS17-2016, complete genome 18273 18273 100% 0.0 99% KX806557.2 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 18273 18273 100% 0.0 99% KX548902.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 18273 18273 100% 0.0 99% KX377337.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 18273 18273 100% 0.0 99% KU937936.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 18273 18273 100% 0.0 99% KU922923.1 Select seq gb|KX893855.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-2/2016, complete genome 18267 18267 100% 0.0 99% KX893855.1 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 18267 18267 100% 0.0 99% KU870645.1 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 18264 18264 100% 0.0 99% KX766029.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 18264 18264 100% 0.0 99% KX702400.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 18254 18254 100% 0.0 99% KU820898.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 18249 18249 100% 0.0 99% KX056898.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 18249 18249 100% 0.0 99% KU955590.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 18247 18247 100% 0.0 99% KX766028.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 18245 18245 100% 0.0 99% KU740184.2 Link to comment Share on other sites More sharing options...
niman Posted October 25, 2016 Author Report Share Posted October 25, 2016 LOCUS KY014299 10651 bp RNA linear VRL 21-OCT-2016 DEFINITION Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-04-MOS polyprotein gene, complete cds. ACCESSION KY014299 VERSION KY014299.1 DBLINK BioProject: PRJNA344504 BioSample: SAMN05844995 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10651) AUTHORS Baniecki,M.L., Barnes,K.G., Bosch,I., Freije,C.A., Gehrke,L., Gladden-Young,A.D., Gnirke,A., Isern,S., Luo,C.Y., MacInnis,B., Matranga,C.B., Metsky,H.C., Michael,S., Park,D.J., Paul,L., Porcelli,M., Qu,J., Sabeti,P.C., Tomkins-Tinch,C.H., Vasquez,C., West,K.L., Winnicki,S., Wohl,S. and Yozwiak,N.L. TITLE Direct Submission JOURNAL Submitted (20-OCT-2016) Viral Genomics, Infectious Disease Program (Infectious Disease Initiative), Broad Institute, 75 Ames St, Cambridge, MA 02142, USA COMMENT ##Assembly-Data-START## Assembly Method :: github.com/broadinstitute/viral-ngs v. v1.11.0-119-g0edb62f-dirty Assembly Name :: USA_2016_FL-04_MOS-1 Coverage :: 27x Sequencing Technology :: Illumina; Swift LC ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10651 /organism="Zika virus" /mol_type="genomic RNA" /isolate="Zika virus/A.aegypti-wt/USA/2016/FL-04-MOS" /isolation_source="pool of 50 female mosquitos" /host="Aedes aegypti" /db_xref="taxon:64320" /country="USA: Miami, FL" /collection_date="04-Sep-2016" /collected_by="Miami-Dade Mosquito Control" 5'UTR <1..81 CDS 82..10353 /note="contains structural and nonstructural proteins" /codon_start=1 /product="polyprotein" /protein_id="AOY08520.1" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSVVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGGGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLVNGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTIEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGEEEKYMDYLST QVRYLGEEGSTPGVL" 3'UTR 10354..>10651 ORIGIN 1 gcgacagttc gagtttgaag cgaaagctag caacagtatc aacaggtttt attttggatt 61 tggaaacgag agtttctggt catgaaaaac ccaaaaaaga aatccggagg attccggatt 121 gtcaatatgc taaaacgcgg agtagcccgt gtgagcccct ttgggggctt gaagaggctg 181 ccagccggac ttctgctggg tcatgggccc atcaggatgg tcttggcgat tctagccttt 241 ttgagattca cggcaatcaa gccatcactg ggtctcatca atagatgggg ttcagtgggg 301 aaaaaagagg ctatggaaat aataaagaag ttcaagaaag atctggctgc catgctgaga 361 ataatcaatg ctaggaagga gaagaagaga cgaggcgcag atactagtgt cggaattgtt 421 ggcctcctgc tgaccacagc tatggcagcg gaggtcacta gacgtgggag tgcatactac 481 atgtacttgg acagaaacga tgctggggag gccatatctt ttccaaccac attggggatg 541 aataagtgtt atatacagat catggatctt ggacacatgt gtgatgccac catgagctat 601 gaatgcccta tgctggatga gggggtggaa ccagatgacg tcgattgttg gtgcaacacg 661 acgtcaactt gggttgtgta cggaacctgc catcacaaaa aaggtgaagc acggagatct 721 agaagagctg tgacgctccc ctcccattcc actaggaagc tgcaaacgcg gtcgcaaacc 781 tggttggaat caagagaata cacaaagcac ttgattagag tcgaaaattg gatattcagg 841 aaccctggct tcgcgttagc agcagctgcc atcgcttggc ttttgggaag ctcaacgagc 901 caaaaagtca tatacttggt catgatactg ctgattgccc cggcatacag catcaggtgc 961 ataggagtca gcaataggga ctttgtggaa ggtatgtcag gtgggacttg ggttgatgtt 1021 gtcttggaac atggaggttg tgtcaccgta atggcacagg acaaaccgac tgtcgacata 1081 gagctggtta caacaacagt cagcaacatg gcggaggtaa gatcctactg ctatgaggca 1141 tcaatatcag acatggcttc ggacagccgc tgcccaacac aaggtgaagc ctaccttgac 1201 aagcaatcag acactcaata tgtctgcaaa agaacgttag tggacagagg ctggggaaat 1261 ggatgtggac tttttggcaa agggagcctg gtgacatgcg ctaagtttgc atgctccaag 1321 aaaatgaccg ggaagagcat ccagccagag aatctggagt accggataat gctgtcagtt 1381 catggctccc agcacagtgg gatgatcgtt aatgacacag gacatgaaac tgatgagaat 1441 agagcgaagg ttgagataac gcccaattca ccaagagccg aagccaccct ggggggtttt 1501 ggaagcctag gacttgattg tgaaccgagg acaggccttg acttctcaga tttgtattac 1561 ttgactatga ataacaagca ctggttggtt cacaaggagt ggttccacga cattccatta 1621 ccttggcacg ctggggcaga caccggaact ccacactgga acaacaaaga agcactggta 1681 gagttcaagg acgcacatgc caaaaggcaa actgtcgtgg ttctagggag tcaagaagga 1741 gcagttcaca cggcccttgc tggagctctg gaggctgaga tggatggtgc aaagggaagg 1801 ctgtcctctg gccacttgaa atgtcgcctg aaaatggata aacttagatt gaagggcgtg 1861 tcatactcct tgtgtaccgc agcgttcaca ttcaccaaga tcccggctga aacactgcac 1921 gggacagtca cagtggaggt acagtacgca gggacagatg gaccttgcaa ggttccagct 1981 cagatggcgg tggacatgca aactctgacc ccagttggga ggttgataac cgccaacccc 2041 gtaatcactg aaagcactga gaactctaag atgatgctgg aacttgatcc accatttggg 2101 gactcttaca ttgtcatagg agtcggggag aagaagatca cccaccactg gcacaggagt 2161 ggcagcacca ttggaaaagc atttgaagcc actgtgagag gtgccaagag aatggcagtc 2221 ttgggagaca cagcctggga ctttggatca gttggaggcg ctctcaactc attgggcaag 2281 ggcatccatc aaatttttgg agcagctttc aaatcattgt ttggaggaat gtcctggttc 2341 tcacaaatcc tcattggaac gttgctgatg tggttgggtc taaacacaaa gaatggatct 2401 atttccctca tgtgcttggc cttaggggga gtgctgatct tcttatccac agccgtctct 2461 gctgatgtgg ggtgctcggt ggacttctca aagaaggaga cgagatgcgg tacaggggtg 2521 ttcgtctata acgacgttga agcctggagg gacaggtaca agtaccatcc tgactccccc 2581 cgtagattgg cagcagcagt caagcaagcc tgggaagatg gtatctgcgg gatctcctct 2641 gtttcaagaa tggaaaacat catgtggaga tcagtagaag gggagctcaa tgcaatcctg 2701 gaagagaatg gagttcaact gacggtcgtt gtgggatctg taaaaaaccc catgtggaga 2761 ggtccacaga gattgcccgt gcctgtgaac gagctgcccc acggctggaa ggcttggggg 2821 aaatcgtact tcgttagagc agcaaagaca aataacagct ttgtcgtgga tggtgacaca 2881 ctgaaggaat gcccactcaa acatagagca tggaacagct ttcttgtgga ggatcatggg 2941 ttcggggtat tccacactag tgtctggctc aaggttagag aagattattc attagagtgt 3001 gatccagccg ttattggaac agctgttaag ggaaaggagg ctgtacacag tgatctaggc 3061 tactggattg agagtgagaa gaatgacaca tggaggctga agagggccca tctgatcgag 3121 atgaaaacat gtgaatggcc aaagtcccac acattgtgga cagatggaat agaagagagt 3181 gatctgatca tacccaagtc tttagctggg ccactcagcc atcacaatac cagagagggc 3241 tacaggaccc aaatgaaagg gccatggcac agtgaagagc ttgaaattcg gtttgaggaa 3301 tgcccaggca ctaaggtcca cgtggaggaa acatgtggaa caagaggacc atctctgaga 3361 tcaaccactg caagcggaag ggtgatcgag gaatggtgct gcagggagtg cacaatgccc 3421 ccactgtcgt tccgggctaa agatggctgt tggtatggaa tggagataag gcccaggaaa 3481 gaaccagaaa gcaacttagt aaggtcagtg gtgactgcag gatcaactga tcacatggat 3541 cacttctccc ttggagtgct tgtgattctg ctcatggtgc aggaagggct gaagaagaga 3601 atgaccacaa agatcatcat aagcacatca atggcagtgc tggtagctat gatcctggga 3661 ggattttcaa tgagtgacct ggctaagctt gcaatcttga tgggtgccac cttcgcggaa 3721 atgaacactg gaggagatgt agctcatctg gcgctgatag cggcattcaa agtcagacca 3781 gcgttgctgg tatctttcat cttcagagct aattggacac cccgtgaaag catgctgctg 3841 gccttggcct cgtgtctttt gcaaactgcg atctccgcct tggaaggcga cctgatggtt 3901 ctcatcaatg gttttgcttt ggcctggttg gcaatacgag cgatggttgt tccacgcact 3961 gataacatca ccttggcaat cctggctgct ctgacaccac tggcccgggg cacactgctt 4021 gtggcgtgga gagcaggcct tgctacttgc ggggggttta tgctcctctc tctgaaggga 4081 aaaggcagtg tgaagaagaa cttaccattt gtcatggccc tgggactaac cgctgtgaga 4141 ctggtcgacc ccatcaacgt ggtgggactg ctgttgctca caaggagtgg gaagcggagc 4201 tggcccccta gcgaagtact cacagctgtt ggcctgatat gcgcattggc tggagggttc 4261 gccaaggcag atatagagat ggctgggccc atggccgcgg tcggtctgct aattgtcagt 4321 tacgtggtct caggaaagag tgtggacatg tacattgaaa gagcaggtga catcacatgg 4381 gaaaaagatg cggaagtcac tggaaacagt ccccggctcg atgtggcgct agatgagagt 4441 ggtgatttct ccctggtgga ggatgacggt ccccccatga gagagatcat actcaaggtg 4501 gtcctgatga ccatctgtgg catgaaccca atagccatac cctttgcagc tggagcgtgg 4561 tacgtatacg tgaagactgg aaaaaggagt ggtgctctat gggatgtgcc tgctcccaag 4621 gaagtaaaaa agggggagac cacagatgga gtgtacagag taatgactcg tagactgcta 4681 ggttcaacac aagttggagt gggagttatg caagaggggg tctttcacac tatgtggcac 4741 gtcacaaaag gatccgcgct gagaagcggt gaagggagac ttgatccata ctggggagat 4801 gtcaagcagg atctggtgtc atactgtggt ccatggaagc tagatgccgc ctgggacggg 4861 cacagcgagg tgcagctctt ggccgtgccc cccggagaga gagcgaggaa catccagact 4921 ctgcccggaa tatttaagac aaaggatggg gacattggag cggttgcgct ggattaccca 4981 gcaggaactt caggatctcc aatcctagac aagtgtggga gagtgatagg actttatggc 5041 aatggggtcg tgatcaaaaa tgggagttat gttagtgcca tcacccaagg gaggagggag 5101 gaagagactc ctgttgagtg cttcgagcct tcgatgctga agaagaagca gctaactgtc 5161 ttagacttgc accctggagc tgggaaaacc aggagagttc ttcctgaaat agtccgtgaa 5221 gctataaaaa caagactccg tactgtgatc ttagctccaa ccagggttgt cgctgctgaa 5281 atggaggaag cccttagagg gcttccagtg cgttatatga caacagcagt caatgtcacc 5341 cattctggaa cagaaatcgt cgacttaatg tgccatgcca ccttcacttc acgtctacta 5401 cagccaatca gagtccccaa ctataatctg tatattatgg atgaggccca cttcacagat 5461 ccctcaagta tagcagcaag aggatacatt tcaacaaggg ttgagatggg cgaggcggct 5521 gccatcttca tgaccgccac gccaccagga acccgtgacg catttccgga ctccaactca 5581 ccaattatgg acaccgaagt ggaagtccca gagagagcct ggagctcagg ctttgattgg 5641 gtgacggatc attctggaaa aacagtttgg tttgttccaa gcgtgaggaa cggcaatgag 5701 atcgcagctt gtctgacaaa ggctggaaaa cgggtcatac agctcagcag aaagactttt 5761 gagacagagt tccagaaaac aaaacatcaa gagtgggact ttgtcgtgac aaccgacatt 5821 tcagagatgg gcgccaactt taaagctgac cgtgtcatag attccaggag atgcctaaag 5881 ccggtcatac ttgatggcga gagagtcatt ctggctggac ccatgcctgt cacacatgcc 5941 agcgctgccc agaggagggg gcgcataggc aggaatccca acaaacctgg agatgagtat 6001 ctgtatggag gtgggtgcgc agagactgac gaagaccatg cacactggct tgaagcaaga 6061 atgctccttg acaatattta cctccaagat ggcctcatag cctcgctcta tcgacctgag 6121 gctgacaaag tagcagccat tgagggagag ttcaagctta ggacggagca aaggaagacc 6181 tttgtggaac tcatgaaaag aggagatctt cctgtttggc tggcctatca ggttgcatct 6241 gccggaataa cttacacaga tagaagatgg tgctttgatg gcacgaccaa caacaccata 6301 atggaagaca gtgtgccggc agaggtgtgg accagacacg gagagaaaag agtgctcaaa 6361 ccgaggtgga tggacgccag agtttgttca gatcatgcgg ccctgaagtc attcaaggag 6421 tttgccgctg ggaaaagagg agcggctttt ggagtgatgg aagccctggg aacactgcca 6481 ggacacatga cagagagatt ccaggaagcc attgacaacc tcgctgtgct catgcgggca 6541 gagactggaa gcaggcctta caaagccgcg gcggcccaat tgccggagac cctagagacc 6601 attatgcttt tggggttgct gggaacagtc tcgctgggaa tctttttcgt cttgatgagg 6661 aacaagggca tagggaagat gggctttgga atggtgactc ttggggccag cgcatggctc 6721 atgtggctct cggaaattga gccagccaga attgcatgtg tcctcattgt tgtgttccta 6781 ttgctggtgg tgctcatacc tgagccagaa aagcaaagat ctccccagga caaccaaatg 6841 gcaatcatca tcatggtagc agtaggtctt ctgggcttga tcaccgccaa tgaactcgga 6901 tggttggaga gaacaaagag tgacctaagc catctaatgg gaaggagaga ggagggagca 6961 accataggat tctcaatgga cattgacctg cggccagcct cagcttgggc catctatgct 7021 gccttgacaa ctttcattac cccagccgtc caacatgcag tgaccacttc atacaacaac 7081 tactccttaa tggcgatggc cacgcaagct ggagtgttgt ttggtatggg caaagggatg 7141 ccattctacg catgggactt tggagtcccg ctgctaatga taggttgcta ctcacaatta 7201 acacccctga ccctaatagt ggccatcatt ttgctcgtgg cgcactacat gtacttgatc 7261 ccagggctgc aggcagcagc tgcgcgtgct gcccagaaga gaacggcagc tggcatcatg 7321 aagaaccctg ttgtggatgg aatagtggtg actgacattg acacaatgac aattgacccc 7381 caagtggaga aaaagatggg acaggtgcta ctcatagcag tagccgtctc cagcgccata 7441 ctgtcgcgga ccgcctgggg ggggggggag gctggggccc tgatcacagc cgcaacttcc 7501 actttgtggg aaggctctcc gaacaagtac tggaactcct ctacagccac ttcactgtgt 7561 aacattttta gggggagtta cttggctgga gcttctctaa tctacacagt aacaagaaac 7621 gctggcttgg tcaagagacg tgggggtgga acaggagaga ccctgggaga gaaatggaag 7681 gcccgcttga accagatgtc ggccctggag ttctactcct acaaaaagtc aggcatcacc 7741 gaggtgtgca gagaagaggc ccgccgcgcc ctcaaggacg gtgtggcaac gggaggccat 7801 gctgtgtccc gaggaagtgc aaagctgaga tggttggtgg agcggggata cctgcagccc 7861 tatggaaagg tcattgatct tggatgtggc agagggggct ggagttacta cgccgccacc 7921 atccgcaaag ttcaagaagt gaaaggatac acaaaaggag gccctggtca tgaagaacct 7981 gtgttggtgc aaagctatgg gtggaacata gtccgtctca agagtggggt ggacgtcttt 8041 catatggcgg ctgagccgtg tgacacgttg ctgtgtgaca taggtgagtc atcatctagt 8101 cctgaagtgg aagaagcacg gacgctcaga gtcctctcca tggtggggga ttggcttgaa 8161 aaaagaccag gagccttttg tataaaagtg ttgtgcccat acaccagcac tatgatggaa 8221 accttggagc ggctgcagcg taggtatggg ggaggactgg tcagagtgcc actctcccgc 8281 aactctacac atgagatgta ctgggtctct ggagcgaaaa gcaacaccat aaaaagtgtg 8341 tccaccacga gccagctcct cttggggcgc atggacgggc ctaggaggcc agtgaaatat 8401 gaggaggatg tgaatctcgg ctctggcacg cgggctgtgg taagctgcgc tgaagctccc 8461 aacatgaaga tcattggtaa ccgcattgaa aggatccgca gtgagcacgc ggaaacgtgg 8521 ttctttgacg agaaccaccc atataggaca tgggcttacc atggaagcta tgaggcccct 8581 acacaagggt cagcatcctc tctagtaaac ggggttgtca ggctcctgtc aaaaccctgg 8641 gatgtggtga ctggagtcac aggaatagcc atgaccgaca ccacaccgta tggtcagcaa 8701 agagttttca aggaaaaagt ggacactagg gtgccagacc cccaagaagg cactcgtcag 8761 gttatgagca tggtctcttc ctggttgtgg aaagagctag gcaaacacaa acggccacga 8821 gtctgcacca aagaagagtt catcaacaag gttcgtagca atgcagcatt aggggcaata 8881 tttgaagagg aaaaagagtg gaagactgca gtggaagctg tgaacgatcc aaggttctgg 8941 gctctagtgg acaaggaaag agagcaccac ctgagaggag agtgccagag ttgtgtgtac 9001 aacatgatgg gaaaaagaga aaagaaacaa ggggaatttg gaaaggccaa gggcagccgc 9061 gccatctggt atatgtggct aggggctaga tttctagagt tcgaagccct tggattcttg 9121 aacgaggatc actggatggg gagagagaac tcaggaggtg gtgttgaagg gctgggatta 9181 caaagactcg gatatgtcct agaagagatg agtcgcatac caggaggaag gatgtatgca 9241 gatgacactg ctggctggga tacccgcatc agcaggtttg atctagagaa tgaagctcta 9301 atcaccaacc aaatggagaa agggcacagg gccttggcat tggccataat caagtacaca 9361 taccaaaata aagtggtaaa ggtccttaga ccagctgaaa aagggaaaac agttatggac 9421 attatttcga gacaagacca aagggggagc ggacaagttg tcacttacgc tcttaacaca 9481 tttaccaacc tagtggtgca actcattcgg aatatggagg ctgaggaagt tctagagatg 9541 caagacttgt ggctgctgcg gaggtcagag aaagtgacca actggttgca gagcaacgga 9601 tgggataggc tcaaacgaat ggcagtcagt ggagatgatt gcgttgtgaa gccaattgat 9661 gataggtttg cacatgccct caggttcttg aatgatatgg gaaaagttag gaaggacaca 9721 caagagtgga aaccctcaac tggatgggac aactgggaag aagttccgtt ttgctcccac 9781 cacttcaata agctccatct caaggacggg aggtccattg tggttccctg ccgccaccaa 9841 gatgaactga ttggccgggc ccgcgtctct ccaggggcgg gatggagcat ccgggagact 9901 gcttgcctag caaaatcata tgcgcaaatg tggcagctcc tttatttcca cagaagggac 9961 ctccgactga tggccaatgc catttgttca tctgtgccag ttgactgggt tccaactggg 10021 agaactacct ggtcaatcca tggaaaggga gaatggatga ccattgaaga catgcttgtg 10081 gtgtggaaca gagtgtggat tgaggagaac gaccacatgg aagacaagac cccagttacg 10141 aaatggacag acattcccta tttgggaaaa agggaagact tgtggtgtgg atctctcata 10201 gggcacagac cgcgcaccac ctgggctgag aacattaaaa acacagtcaa catggtgcgc 10261 aggatcatag gtgaggaaga aaagtacatg gactacctat ccacccaagt tcgttacttg 10321 ggtgaagaag ggtctacacc tggagtgctg taagcaccaa tcttaatgtt gtcaggcctg 10381 ctagtcagcc acagcttggg gaaagctgtg cagcctgtga cccccccagg agaagctggg 10441 aaaccaagcc tatagtcagg ccgagaacgc catggcacgg aagaagccat gctgcctgtg 10501 agcccctcag aggacactga gtcaaaaaac cccacgcgct tggaggcgca ggatgggaaa 10561 agaaggtggc gaccttcccc acccttcaat ctggggcctg aactggagat cagctgtgga 10621 tctccagaag agggactagt ggttagagga g Link to comment Share on other sites More sharing options...
niman Posted October 25, 2016 Author Report Share Posted October 25, 2016 Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KY014299.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-04-MOS polyprotein gene, complete cds 18525 18525 100% 0.0 100% KY014299.1 Select seq gb|KX922708.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds 18511 18511 100% 0.0 99% KX922708.1 Select seq gb|KY014322.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-03-MOS polyprotein gene, complete cds 18493 18493 100% 0.0 99% KY014322.1 Select seq gb|KX838906.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds 18493 18493 100% 0.0 99% KX838906.2 Select seq gb|KX922705.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds 18482 18482 100% 0.0 99% KX922705.1 Select seq gb|KY014304.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0180-SER polyprotein gene, complete cds 18426 18426 100% 0.0 99% KY014304.1 Select seq gb|KY014300.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0208-SER polyprotein gene, complete cds 18417 18417 100% 0.0 99% KY014300.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 18417 18417 100% 0.0 99% KX673530.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 18411 18411 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 18411 18411 100% 0.0 99% KU853012.1 Select seq gb|KY014295.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-010-URI polyprotein gene, complete cds 18408 18408 100% 0.0 99% KY014295.1 Select seq dbj|LC190723.1| Zika virus genomic RNA, complete genome, strain: ZIKV/Hu/Yokohama/1/2016 18408 18408 100% 0.0 99% LC190723.1 Select seq gb|KX842449.2| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds 18408 18408 100% 0.0 99% KX842449.2 Select seq gb|KY014321.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0115-SER polyprotein gene, complete cds 18402 18402 100% 0.0 99% KY014321.1 Select seq gb|KY014323.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-02-MOS polyprotein gene, complete cds 18393 18393 100% 0.0 99% KY014323.1 Select seq gb|KX922703.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds 18393 18393 100% 0.0 99% KX922703.1 Select seq gb|KX838905.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds 18393 18393 100% 0.0 99% KX838905.2 Select seq gb|KX832731.1| Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds 18393 18393 100% 0.0 99% KX832731.1 Select seq gb|KX922706.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds 18392 18392 100% 0.0 99% KX922706.1 Select seq gb|KX922707.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds 18390 18390 100% 0.0 99% KX922707.1 Select seq gb|KX922704.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds 18390 18390 100% 0.0 99% KX922704.1 Select seq gb|KY014314.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0436-SER polyprotein gene, complete cds 18384 18384 100% 0.0 99% KY014314.1 Select seq gb|KX838904.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds 18384 18384 100% 0.0 99% KX838904.2 Select seq gb|KY014324.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-01-MOS polyprotein gene, complete cds 18381 18381 100% 0.0 99% KY014324.1 Select seq gb|KY014316.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-039-URI polyprotein gene, complete cds 18381 18381 100% 0.0 99% KY014316.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 18321 18321 100% 0.0 99% KX447510.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 18318 18318 100% 0.0 99% KX280026.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 18318 18318 100% 0.0 99% KU729217.2 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 18312 18312 100% 0.0 99% KX447512.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 18312 18312 100% 0.0 99% KX369547.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 18312 18312 100% 0.0 99% KU509998.3 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 18309 18309 100% 0.0 99% KJ776791.2 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 18309 18309 100% 0.0 99% KX447509.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 18309 18309 100% 0.0 99% KU991811.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 18303 18303 100% 0.0 99% KX447513.1 Select seq gb|KX811222.1| Zika virus isolate Brazil_2015_MG, complete genome 18300 18300 100% 0.0 99% KX811222.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 18300 18300 100% 0.0 99% KX197205.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 18300 18300 100% 0.0 99% KX447515.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 18300 18300 100% 0.0 99% KX447511.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 18300 18300 100% 0.0 99% KU321639.1 Select seq gb|KX879604.1| Zika virus isolate SN089, complete genome 18294 18294 100% 0.0 99% KX879604.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 18294 18294 100% 0.0 99% KX447514.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 18294 18294 100% 0.0 99% KX051563.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 18291 18291 100% 0.0 99% KX447516.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 18291 18291 100% 0.0 99% KU729218.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 18291 18291 100% 0.0 99% KU707826.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 18291 18291 100% 0.0 99% KU527068.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 18291 18291 100% 0.0 99% KU365779.1 Select seq gb|KX879603.1| Zika virus isolate SN062, complete genome 18285 18285 100% 0.0 99% KX879603.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 18285 18285 100% 0.0 99% KX262887.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 18285 18285 100% 0.0 99% KX197192.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 18285 18285 100% 0.0 99% KU926310.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 18285 18285 100% 0.0 99% KU926309.1 Select seq gb|KY014303.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0127-SER polyprotein gene, complete cds 18282 18282 100% 0.0 99% KY014303.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 18282 18282 100% 0.0 99% KU940228.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 18276 18276 100% 0.0 99% KX694534.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 18276 18276 100% 0.0 99% KX447517.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 18276 18276 100% 0.0 99% KX247646.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 18276 18276 100% 0.0 99% KX198135.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 18276 18276 100% 0.0 99% KX156776.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 18276 18276 100% 0.0 99% KU501217.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 18276 18276 100% 0.0 99% KU365780.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 18273 18273 100% 0.0 99% KX156774.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 18273 18273 100% 0.0 99% KU647676.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 18273 18273 100% 0.0 99% KU501216.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 18273 18273 100% 0.0 99% KU365777.1 Select seq gb|KY014297.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-6864-URI polyprotein gene, complete cds 18267 18267 100% 0.0 99% KY014297.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 18267 18267 100% 0.0 99% KU820897.5 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 18267 18267 100% 0.0 99% KU758877.1 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 18267 18267 100% 0.0 99% KX247632.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 18267 18267 100% 0.0 99% KX156775.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 18267 18267 100% 0.0 99% KX087102.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 18264 18264 100% 0.0 99% KX520666.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 18264 18264 99% 0.0 99% KU497555.1 Select seq gb|KY014327.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME167-PLA polyprotein gene, complete cds 18260 18260 100% 0.0 99% KY014327.1 Select seq gb|KX856011.1| Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome 18258 18258 100% 0.0 99% KX856011.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 18258 18258 100% 0.0 99% KX446951.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 18258 18258 100% 0.0 99% KU501215.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 18258 18258 100% 0.0 99% KU365778.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 18258 18258 100% 0.0 99% KU312312.1 Select seq gb|KY014315.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME152-SER polyprotein gene, complete cds 18254 18254 100% 0.0 99% KY014315.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 18254 18254 100% 0.0 99% KX601168.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 18254 18254 100% 0.0 99% KX446950.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 18254 18254 100% 0.0 99% KX087101.2 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 18254 18254 100% 0.0 99% KU922960.1 Select seq gb|KX893855.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-2/2016, complete genome 18253 18253 100% 0.0 99% KX893855.1 Select seq gb|KY014296.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ131D1-URI polyprotein gene, complete cds 18249 18249 100% 0.0 99% KY014296.1 Select seq gb|KX806557.2| Zika virus isolate TS17-2016, complete genome 18249 18249 100% 0.0 99% KX806557.2 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 18249 18249 100% 0.0 99% KX702400.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 18249 18249 100% 0.0 99% KX548902.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 18249 18249 100% 0.0 99% KX377337.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 18249 18249 100% 0.0 99% KU937936.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 18249 18249 100% 0.0 99% KU922923.1 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 18245 18245 100% 0.0 99% KU870645.1 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 18240 18240 100% 0.0 99% KX766029.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 18231 18231 100% 0.0 99% KU820898.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 18227 18227 100% 0.0 99% KX056898.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 18227 18227 100% 0.0 99% KU955590.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 18224 18224 100% 0.0 99% KX766028.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 18222 18222 100% 0.0 99% KU740184.2 Link to comment Share on other sites More sharing options...
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