Scripps has posted the full Zika sequence for mosquito pool 8 in South Miami Beach (1236 Drexel Ave - same trap as pool 5)

https://www.google.com/maps/d/edit?hl=en&hl=en&authuser=0&authuser=0&mid=1FlIB7hHnVgGD9TlbSx5HwAj-PEQ&ll=25.784761829428696%2C-80.13496935328521&z=18

Edited November 1, 20169 yr by niman

Ae-aegypti_FL08M_2016-10-05

Sequences producing significant alignments:

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AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments

Sequences producing significant alignments:

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
Select seq gb|KY014295.1|	Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-010-URI polyprotein gene, complete cds	18947	18947	100%	0.0	99%	KY014295.1
Select seq gb|KX842449.2|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds	18947	18947	100%	0.0	99%	KX842449.2
Select seq gb|KY014323.1|	Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-02-MOS polyprotein gene, complete cds	18942	18942	100%	0.0	99%	KY014323.1
Select seq gb|KX922703.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds	18942	18942	100%	0.0	99%	KX922703.1
Select seq gb|KX838905.2|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds	18942	18942	100%	0.0	99%	KX838905.2
Select seq gb|KX832731.1|	Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds	18931	18931	100%	0.0	99%	KX832731.1
Select seq gb|KX922706.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds	18927	18927	100%	0.0	99%	KX922706.1
Select seq gb|KX922704.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds	18925	18925	100%	0.0	99%	KX922704.1
Select seq gb|KX838904.2|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds	18918	18918	100%	0.0	99%	KX838904.2
Select seq gb|KY014324.1|	Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-01-MOS polyprotein gene, complete cds	18914	18914	100%	0.0	99%	KY014324.1
Select seq gb|KY014304.1|	Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0180-SER polyprotein gene, complete cds	18870	18870	100%	0.0	99%	KY014304.1
Select seq gb|KY014300.1|	Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0208-SER polyprotein gene, complete cds	18870	18870	100%	0.0	99%	KY014300.1
Select seq gb|KU853013.1|	Zika virus isolate Dominican Republic/2016/PD2, complete genome	18864	18864	100%	0.0	99%	KU853013.1
Select seq gb|KU853012.1|	Zika virus isolate Dominican Republic/2016/PD1, complete genome	18862	18862	100%	0.0	99%	KU853012.1
Select seq dbj|LC190723.1|	Zika virus genomic RNA, complete genome, strain: ZIKV/Hu/Yokohama/1/2016	18859	18859	100%	0.0	99%	LC190723.1
Select seq gb|KY014321.1|	Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0115-SER polyprotein gene, complete cds	18853	18853	100%	0.0	99%	KY014321.1
Select seq gb|KX922707.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds	18836	18836	100%	0.0	99%	KX922707.1
Select seq gb|KX673530.1|	Zika virus isolate PHE_semen_Guadeloupe, complete genome	18836	18836	100%	0.0	99%	KX673530.1
Select seq gb|KY014322.1|	Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-03-MOS polyprotein gene, complete cds	18831	18831	100%	0.0	99%	KY014322.1
Select seq gb|KY014314.1|	Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0436-SER polyprotein gene, complete cds	18831	18831	100%	0.0	99%	KY014314.1
Select seq gb|KX838906.2|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds	18831	18831	100%	0.0	99%	KX838906.2
Select seq gb|KY014316.1|	Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-039-URI polyprotein gene, complete cds	18825	18825	100%	0.0	99%	KY014316.1
Select seq gb|KX922708.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds	18820	18820	100%	0.0	99%	KX922708.1
Select seq gb|KX922705.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds	18816	18816	100%	0.0	99%	KX922705.1
Select seq gb|KY014299.1|	Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-04-MOS polyprotein gene, complete cds	18803	18803	100%	0.0	99%	KY014299.1
Select seq gb|KX447510.1|	Zika virus isolate 1_0049_PF polyprotein gene, complete cds	18753	18753	100%	0.0	99%	KX447510.1
Select seq gb|KX280026.1|	Zika virus isolate Paraiba_01, complete genome	18748	18748	100%	0.0	99%	KX280026.1
Select seq gb|KX447512.1|	Zika virus isolate 1_0181_PF polyprotein gene, complete cds	18742	18742	100%	0.0	99%	KX447512.1
Select seq gb|KX369547.1|	Zika virus strain PF13/251013-18, complete genome	18742	18742	100%	0.0	99%	KX369547.1
Select seq gb|KU509998.3|	Zika virus strain Haiti/1225/2014, complete genome	18742	18742	100%	0.0	99%	KU509998.3
Select seq gb|KJ776791.2|	Zika virus strain H/PF/2013, complete genome	18737	18737	100%	0.0	99%	KJ776791.2
Select seq gb|KX447509.1|	Zika virus isolate 1_0087_PF polyprotein gene, complete cds	18737	18737	100%	0.0	99%	KX447509.1
Select seq gb|KU991811.1|	Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds	18737	18737	100%	0.0	99%	KU991811.1
Select seq gb|KU729217.2|	Zika virus isolate BeH823339 polyprotein gene, complete cds	18737	18737	100%	0.0	99%	KU729217.2
Select seq gb|KX447513.1|	Zika virus isolate 1_0134_PF polyprotein gene, complete cds	18731	18731	100%	0.0	99%	KX447513.1
Select seq gb|KR872956.1|	Zika virus strain 17829 polyprotein gene, complete cds	18726	18726	100%	0.0	99%	KR872956.1
Select seq gb|KX811222.1|	Zika virus isolate Brazil_2015_MG, complete genome	18726	18726	100%	0.0	99%	KX811222.1
Select seq gb|KX197205.1|	Zika virus isolate 9, complete genome	18726	18726	100%	0.0	99%	KX197205.1
Select seq gb|KX447515.1|	Zika virus isolate 1_0030_PF polyprotein gene, complete cds	18726	18726	100%	0.0	99%	KX447515.1
Select seq gb|KX447511.1|	Zika virus isolate 1_0015_PF polyprotein gene, complete cds	18726	18726	100%	0.0	99%	KX447511.1
Select seq gb|KU321639.1|	Zika virus strain ZikaSPH2015, complete genome	18726	18726	100%	0.0	99%	KU321639.1
Select seq gb|KX879604.1|	Zika virus isolate SN089, complete genome	18720	18720	100%	0.0	99%	KX879604.1
Select seq gb|KX447514.1|	Zika virus isolate 1_0035_PF polyprotein gene, complete cds	18720	18720	100%	0.0	99%	KX447514.1
Select seq gb|KX051563.1|	Zika virus isolate Haiti/1/2016, complete genome	18720	18720	100%	0.0	99%	KX051563.1
Select seq gb|KX447516.1|	Zika virus isolate 1_0111_PF polyprotein gene, complete cds	18715	18715	100%	0.0	99%	KX447516.1
Select seq gb|KU729218.1|	Zika virus isolate BeH828305 polyprotein gene, complete cds	18715	18715	100%	0.0	99%	KU729218.1
Select seq gb|KU707826.1|	Zika virus isolate SSABR1, complete genome	18715	18715	100%	0.0	99%	KU707826.1
Select seq gb|KU527068.1|	Zika virus strain Natal RGN, complete genome	18715	18715	100%	0.0	99%	KU527068.1
Select seq gb|KU365779.1|	Zika virus strain BeH819966 polyprotein gene, complete cds	18715	18715	100%	0.0	99%	KU365779.1
Select seq gb|KX879603.1|	Zika virus isolate SN062, complete genome	18709	18709	100%	0.0	99%	KX879603.1
Select seq gb|KX262887.1|	Zika virus isolate 103451, complete genome	18709	18709	100%	0.0	99%	KX262887.1
Select seq gb|KX197192.1|	Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome	18709	18709	100%	0.0	99%	KX197192.1
Select seq gb|KU926310.1|	Zika virus isolate Rio-S1, complete genome	18709	18709	100%	0.0	99%	KU926310.1
Select seq gb|KU926309.1|	Zika virus isolate Rio-U1, complete genome	18709	18709	100%	0.0	99%	KU926309.1
Select seq gb|KU940228.1|	Zika virus isolate Bahia07, partial genome	18703	18703	100%	0.0	99%	KU940228.1
Select seq gb|KX694534.1|	Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome	18698	18698	100%	0.0	99%	KX694534.1
Select seq gb|KX198135.1|	Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome	18698	18698	100%	0.0	99%	KX198135.1
Select seq gb|KU501217.1|	Zika virus strain 8375 polyprotein gene, complete cds	18698	18698	100%	0.0	99%	KU501217.1
Select seq gb|KU365780.1|	Zika virus strain BeH815744 polyprotein gene, complete cds	18698	18698	100%	0.0	99%	KU365780.1
Select seq gb|KY014303.1|	Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0127-SER polyprotein gene, complete cds	18692	18692	100%	0.0	99%	KY014303.1
Select seq gb|KU647676.1|	Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds	18692	18692	100%	0.0	99%	KU647676.1
Select seq gb|KU501216.1|	Zika virus strain 103344 polyprotein gene, complete cds	18692	18692	100%	0.0	99%	KU501216.1
Select seq gb|KU365777.1|	Zika virus strain BeH818995 polyprotein gene, complete cds	18692	18692	100%	0.0	99%	KU365777.1
Select seq gb|KX447517.1|	Zika virus isolate 1_0038_PF polyprotein gene, complete cds	18687	18687	100%	0.0	99%	KX447517.1
Select seq gb|KU758877.1|	Zika virus isolate 17271 polyprotein gene, complete cds	18687	18687	100%	0.0	99%	KU758877.1
Select seq gb|KX247646.1|	Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome	18687	18687	100%	0.0	99%	KX247646.1
Select seq gb|KX156776.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome	18687	18687	100%	0.0	99%	KX156776.1
Select seq gb|KY014297.1|	Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-6864-URI polyprotein gene, complete cds	18685	18685	100%	0.0	99%	KY014297.1
Select seq gb|KU497555.1|	Zika virus isolate Brazil-ZKV2015, complete genome	18683	18683	99%	0.0	99%	KU497555.1
Select seq gb|KX520666.1|	Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds	18681	18681	100%	0.0	99%	KX520666.1
Select seq gb|KX156774.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome	18681	18681	100%	0.0	99%	KX156774.1
Select seq gb|KY014327.1|	Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME167-PLA polyprotein gene, complete cds	18678	18678	100%	0.0	99%	KY014327.1
Select seq gb|KU820897.5|	Zika virus isolate FLR polyprotein gene, complete cds	18676	18676	100%	0.0	99%	KU820897.5
Select seq gb|KX247632.1|	Zika virus isolate MEX_I_7 polyprotein gene, complete cds	18676	18676	100%	0.0	99%	KX247632.1
Select seq gb|KX156775.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome	18676	18676	100%	0.0	99%	KX156775.1
Select seq gb|KX087102.1|	Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome	18676	18676	100%	0.0	99%	KX087102.1
Select seq gb|KU365778.1|	Zika virus strain BeH819015 polyprotein gene, complete cds	18676	18676	100%	0.0	99%	KU365778.1
Select seq gb|KU312312.1|	Zika virus isolate Z1106033 polyprotein gene, complete cds	18676	18676	100%	0.0	99%	KU312312.1
Select seq gb|KY014315.1|	Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME152-SER polyprotein gene, complete cds	18670	18670	100%	0.0	99%	KY014315.1
Select seq gb|KU922960.1|	Zika virus isolate MEX/InDRE/Sm/2016, complete genome	18670	18670	100%	0.0	99%	KU922960.1
Select seq gb|KY014296.1|	Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ131D1-URI polyprotein gene, complete cds	18665	18665	100%	0.0	99%	KY014296.1
Select seq gb|KX806557.2|	Zika virus isolate TS17-2016, complete genome	18665	18665	100%	0.0	99%	KX806557.2
Select seq gb|KX856011.1|	Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome	18665	18665	100%	0.0	99%	KX856011.1
Select seq gb|KX548902.1|	Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds	18665	18665	100%	0.0	99%	KX548902.1
Select seq gb|KX446951.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome	18665	18665	100%	0.0	99%	KX446951.1
Select seq gb|KU937936.1|	Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds	18665	18665	100%	0.0	99%	KU937936.1
Select seq gb|KU922923.1|	Zika virus isolate MEX/InDRE/Lm/2016, complete genome	18665	18665	100%	0.0	99%	KU922923.1
Select seq gb|KU501215.1|	Zika virus strain PRVABC59, complete genome	18665	18665	100%	0.0	99%	KU501215.1
Select seq gb|KX601168.1|	Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome	18659	18659	100%	0.0	99%	KX601168.1
Select seq gb|KX446950.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome	18659	18659	100%	0.0	99%	KX446950.1
Select seq gb|KX087101.2|	Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome	18659	18659	100%	0.0	99%	KX087101.2
Select seq gb|KU870645.1|	Zika virus isolate FB-GWUH-2016, complete genome	18659	18659	100%	0.0	99%	KU870645.1
Select seq gb|KX893855.1|	Zika virus strain Zika virus/Homo sapiens/VEN/UF-2/2016, complete genome	18657	18657	100%	0.0	99%	KX893855.1
Select seq gb|KX702400.1|	Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome	18654	18654	100%	0.0	99%	KX702400.1
Select seq gb|KX377337.1|	Zika virus strain PRVABC-59, complete genome	18654	18654	100%	0.0	99%	KX377337.1
Select seq gb|KX766029.1|	Zika virus isolate R116265, complete genome	18643	18643	100%	0.0	99%	KX766029.1
Select seq gb|KU820898.1|	Zika virus isolate GZ01 polyprotein gene, complete cds	18643	18643	100%	0.0	99%	KU820898.1
Select seq gb|KX056898.1|	Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds	18637	18637	100%	0.0	99%	KX056898.1
Select seq gb|KU955590.1|	Zika virus isolate Z16019 polyprotein gene, complete cds	18637	18637	100%	0.0	99%	KU955590.1
Select seq gb|KX766028.1|	Zika virus isolate R114916, complete genome	18633	18633	100%	0.0	99%	KX766028.1