niman Posted November 24, 2016 Report Share Posted November 24, 2016 Croatian Veterinary Institute has released two H5N8 sets of sequences (at GISAID) from mute swans which match Uvs Lake sequences. Link to comment Share on other sites More sharing options...
niman Posted November 24, 2016 Author Report Share Posted November 24, 2016 Isolate name: A/mute swan/Croatia/70/2016 Isolate ID: EPI_ISL_238196 Passage details/history: 0 Type: A / H5N8 Lineage: Sample information Collection date: 2016-10-31 Host Cygnus olor Additional host information: Domestic status: Wild Is vaccinated: Location: Croatia / Vukovarsko-Srijemska Zupanija Additional location information: Cerna, river Bid Health status: Dead Specimen source: Organ Strain or commercial product name used for vaccination: Institute information Originating lab: Sample ID given by the sample provider: Address: Submitting lab: Croatian Veterinary Institute Sample ID given by the submitting laboratory: Authors: Address: Croatian Veterinary Institute Poultry Centre Heinzelova 55 10000 Zagreb Croatia Publication Publication In vivo antiviral resistance Phenotype Genotype Unspecified Antiviral resistance tested by experimental procedures Adamantanes: Unknown Oseltamivir: Unknown Zanamivir: Unknown Peramivir: Unknown Other: Unknown Additional information Antigenic characterization: Note: Sequence segment identifier length accession # INSDC Sequence HA A/mute swan/Croatia/70/2016 1729 EPI861568 NA A/mute swan/Croatia/70/2016 1425 EPI861569 MP A/mute swan/Croatia/70/2016 983 EPI861570 NS A/mute swan/Croatia/70/2016 838 EPI861571 Submitter information Submitter: Savić, Vladimir Submission Date: 2016-11-24 Last modifier: Savić, Vladimir Last modified: 2016-11-24 Address: Croatian Veterinary Institute Poultry Centre Heinzelova 55 10000 Zagreb Croatia Link to comment Share on other sites More sharing options...
niman Posted November 24, 2016 Author Report Share Posted November 24, 2016 Align Segment-ID Name Score E-Value Identity EPI861568 A/mute swan/Croatia/70/2016 (A/H5N8) segment 4 (HA) 3147.8 0.000000e+00 1704/1704 (100%) EPI861572 A/mute swan/Croatia/78/2016 (A/H5N8) segment 4 (HA) 3142.3 0.000000e+00 1703/1704 (99%) EPI859212 A/tufted_duck/Germany-SH/R8446/2016 (A/H5N8) segment 4 (HA) 3098.0 0.000000e+00 1695/1704 (99%) EPI836614 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 4 (HA) 3098.0 0.000000e+00 1695/1704 (99%) EPI836606 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 4 (HA) 3098.0 0.000000e+00 1695/1704 (99%) EPI823756 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 4 (HA) 3098.0 0.000000e+00 1695/1704 (99%) EPI823748 A/wild duck/Tyva/35/2016 (A/H5N8) segment 4 (HA) 3098.0 0.000000e+00 1695/1704 (99%) EPI823460 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 4 (HA) 3098.0 0.000000e+00 1695/1704 (99%) EPI773757 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 4 (HA) 3098.0 0.000000e+00 1696/1705 (99%) EPI859650 A/wild duck/Germany-BW/R8455/2016 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI860231 A/wild duck/Poland/82A/2016 (A/H5N8) segment 4 (HA) 3072.1 0.000000e+00 1690/1704 (99%) EPI703608 A/duck/Eastern China/S1109/2014 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI681300 A/goose/Zhejiang/925104/2014 (A/H5N8) segment 4 (HA) 2992.7 0.000000e+00 1676/1704 (98%) EPI681299 A/goose/Zhejiang/925037/2014 (A/H5N8) segment 4 (HA) 2992.7 0.000000e+00 1676/1704 (98%) EPI703602 A/duck/Eastern China/S0215/2014 (A/H5N8) segment 4 (HA) 2981.6 0.000000e+00 1674/1704 (98%) EPI681290 A/goose/Zhejiang/925106/2014 (A/H5N6) segment 4 (HA) 2970.5 0.000000e+00 1672/1704 (98%) EPI509698 A/breeder duck/Korea/Gochang1/2014 (A/H5N8) segment 4 (HA) 2959.5 0.000000e+00 1670/1704 (98%) EPI561495 A/Baikal teal/Korea/H52/2014 (A/H5N8) segment 4 (HA) 2948.4 0.000000e+00 1668/1704 (97%) EPI591879 A/duck/Jiangxi/23970/2013 (A/H0) segment 4 (HA) 2942.8 0.000000e+00 1667/1704 (97%) EPI703599 A/duck/Eastern China/S1210/2013 (A/H5N8) segment 4 (HA) 2937.3 0.000000e+00 1666/1704 (97%) EPI690792 A/goose/Jiangsu/QD5/2014 (A/H5N8) segment 4 (HA) 2937.3 0.000000e+00 1666/1704 (97%) EPI762158 A/goose/Eastern China/CZ/2013 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1665/1704 (97%) EPI703607 A/goose/Eastern China/S0408/2014 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1665/1704 (97%) EPI690808 A/goose/Yangzhou/0420/2014 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1666/1705 (97%) EPI690800 A/goose/Shandong/WFSG1/2014 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1665/1704 (97%) EPI602037 A/duck/Ningbo/3262/2013 (A/H0) segment 4 (HA) 2926.2 0.000000e+00 1664/1704 (97%) EPI583870 A/duck/Shaoxing/5240/2013 (A/H0) segment 4 (HA) 2926.2 0.000000e+00 1664/1704 (97%) EPI530985 A/duck/Zhejiang/W24/2013 (A/H5N8) segment 4 (HA) 2926.2 0.000000e+00 1664/1704 (97%) EPI762150 A/duck/Eastern China/JY/2014 (A/H5N8) segment 4 (HA) 2920.7 0.000000e+00 1664/1705 (97%) EPI530986 A/duck/Zhejiang/6D18/2013 (A/H5N8) segment 4 (HA) 2920.7 0.000000e+00 1663/1704 (97%) EPI507673 A/mallard duck/Shanghai/SH-9/2013 (A/H5N8) segment 4 (HA) 2920.7 0.000000e+00 1663/1704 (97%) EPI860239 A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 4 (HA) 2917.0 0.000000e+00 1599/1609 (99%) EPI703595 A/duck/Eastern China/L1021/2012 (A/H5N8) segment 4 (HA) 2915.1 0.000000e+00 1662/1704 (97%) EPI681280 A/goose/Zhejiang/77166/2014 (A/H5N2) segment 4 (HA) 2911.4 0.000000e+00 1660/1702 (97%) EPI646105 A/goose/Jiangsu/WX202/2014 (A/H5N8) segment 4 (HA) 2904.1 0.000000e+00 1660/1704 (97%) EPI681298 A/duck/Zhejiang/925169/2014 (A/H5N8) segment 4 (HA) 2898.5 0.000000e+00 1660/1705 (97%) EPI703593 A/duck/Eastern China/L0611/2011 (A/H5N8) segment 4 (HA) 2893.0 0.000000e+00 1658/1704 (97%) EPI682915 A/duck/Wenzhou/YHQL22/2014 (A/H5N6) segment 4 (HA) 2893.0 0.000000e+00 1658/1704 (97%) EPI703592 A/duck/Eastern China/L0423/2011 (A/H5N8) segment 4 (HA) 2887.4 0.000000e+00 1657/1704 (97%) EPI681297 A/duck/Zhejiang/925019/2014 (A/H5N8) segment 4 (HA) 2887.4 0.000000e+00 1658/1705 (97%) EPI593747 A/goose/Shandong/k1201/2009 (A/H5N1) segment 4 (HA) 2881.9 0.000000e+00 1656/1704 (97%) EPI442017 A/duck/Jiangsu/k1203/2010 (A/H5N8) segment 4 (HA) 2881.9 0.000000e+00 1656/1704 (97%) EPI703594 A/duck/Eastern China/L0722/2012 (A/H5N8) segment 4 (HA) 2870.8 0.000000e+00 1654/1704 (97%) EPI643147 A/Environment/Guangdong/GZ55/2013(H5N8) (A/H5N8) segment 4 (HA) 2865.3 0.000000e+00 1651/1707 (96%) EPI475579 A/wild duck/Shandong/628/2011 (A/H5N1) segment 4 (HA) 2854.2 0.000000e+00 1651/1704 (96%) EPI703596 A/duck/Eastern China/L1120/2012 (A/H5N8) segment 4 (HA) 2848.7 0.000000e+00 1650/1704 (96%) EPI703591 A/duck/Eastern China/L0405/2010 (A/H5N8) segment 4 (HA) 2848.7 0.000000e+00 1650/1704 (96%) EPI703598 A/goose/Eastern China/L1204/2012 (A/H5N8) segment 4 (HA) 2843.1 0.000000e+00 1649/1704 (96%) EPI703590 A/duck/Eastern China/L0230/2010 (A/H5N2) segment 4 (HA) 2837.6 0.000000e+00 1648/1704 (96%) EPI703589 A/duck/Eastern China/L0321/2010 (A/H5N2) segment 4 (HA) 2837.6 0.000000e+00 1648/1704 (96%) EPI431456 A/duck/Hebei/3/2011 (A/H5N2) segment 4 (HA) 2837.6 0.000000e+00 1648/1704 (96%) EPI398966 A/goose/Eastern China/1112/2011 (A/H5N2) segment 4 (HA) 2826.5 0.000000e+00 1646/1704 (96%) EPI399960 A/duck/Jiangsu/m234/2012 (A/H5N2) segment 4 (HA) 2822.8 0.000000e+00 1638/1693 (96%) EPI398965 A/duck/Eastern China/1111/2011 (A/H5N2) segment 4 (HA) 2821.0 0.000000e+00 1645/1704 (96%) EPI672795 A/duck/Guangdong/s14044/2014 (A/H5N8) segment 4 (HA) 2809.9 0.000000e+00 1643/1704 (96%) EPI672787 A/goose/Guangdong/s13124/2013 (A/H5N8) segment 4 (HA) 2809.9 0.000000e+00 1643/1704 (96%) EPI682917 A/duck/Taizhou/TZYG12/2015 (A/H5N6) segment 4 (HA) 2798.8 0.000000e+00 1641/1704 (96%) EPI544892 A/duck/Shandong/Q1/2013 (A/H5N8) segment 4 (HA) 2798.8 0.000000e+00 1641/1704 (96%) EPI703597 A/goose/Eastern China/L1214/2012 (A/H5N8) segment 4 (HA) 2793.3 0.000000e+00 1640/1704 (96%) EPI493825 A/duck/Guangdong/wy19/2008 (A/H5N5) segment 4 (HA) 2787.7 0.000000e+00 1640/1705 (96%) EPI493817 A/duck/Guangdong/wy11/2008 (A/H5N5) segment 4 (HA) 2765.6 0.000000e+00 1638/1707 (95%) EPI431448 A/duck/Hebei/2/2011 (A/H5N2) segment 4 (HA) 2761.9 0.000000e+00 1634/1704 (95%) EPI687531 A/Enviroment/Guangdong/SS127/2013(H5N6) (A/H5N6) segment 4 (HA) 2748.9 0.000000e+00 1633/1705 (95%) EPI499478 A/chicken/China/AH/2012 (A/H5N1) segment 4 (HA) 2743.4 0.000000e+00 1631/1704 (95%) EPI676397 A/environment/GZ/75/2014 (A/H5N6) segment 4 (HA) 2737.9 0.000000e+00 1631/1705 (95%) EPI681296 A/chicken/Zhejiang/727155/2014 (A/H5N6) segment 4 (HA) 2732.3 0.000000e+00 1630/1705 (95%) EPI602419 A/chicken/Dongguan/3363/2013 (A/H5N6) segment 4 (HA) 2732.3 0.000000e+00 1630/1705 (95%) EPI602028 A/chicken/Dongguan/4190/2013 (A/H0) segment 4 (HA) 2728.6 0.000000e+00 1629/1705 (95%) EPI703600 A/goose/Eastern China/S0513/2013 (A/H5N6) segment 4 (HA) 2726.8 0.000000e+00 1629/1705 (95%) EPI681295 A/chicken/Zhejiang/727026/2014 (A/H5N6) segment 4 (HA) 2726.8 0.000000e+00 1629/1705 (95%) EPI681294 A/chicken/Zhejiang/727022/2014 (A/H5N6) segment 4 (HA) 2726.8 0.000000e+00 1629/1705 (95%) EPI681284 A/chicken/Zhejiang/727159/2014 (A/H5N2) segment 4 (HA) 2726.8 0.000000e+00 1629/1705 (95%) EPI681283 A/chicken/Zhejiang/727079/2014 (A/H5N2) segment 4 (HA) 2726.8 0.000000e+00 1629/1705 (95%) EPI599339 A/duck/Dongguan/3069/2013 (A/H5N6) segment 4 (HA) 2726.8 0.000000e+00 1629/1705 (95%) EPI599299 A/chicken/Shenzhen/1395/2013 (A/H5N6) segment 4 (HA) 2726.8 0.000000e+00 1629/1705 (95%) EPI328878 A/duck/Eastern China/031/2009 (A/H5N5) segment 4 (HA) 2726.8 0.000000e+00 1630/1706 (95%) EPI687498 A/Goose/ Guangdong /JG125/2013(H5N6) (A/H5N6) segment 4 (HA) 2721.2 0.000000e+00 1628/1705 (95%) EPI681287 A/goose/Zhejiang/727110/2014 (A/H5N6) segment 4 (HA) 2721.2 0.000000e+00 1628/1705 (95%) EPI681286 A/goose/Zhejiang/727092/2014 (A/H5N6) segment 4 (HA) 2721.2 0.000000e+00 1628/1705 (95%) EPI602484 A/chicken/Shenzhen/1061/2013 (A/H5N6) segment 4 (HA) 2721.2 0.000000e+00 1629/1706 (95%) EPI602412 A/chicken/Dongguan/2690/2013 (A/H5N6) segment 4 (HA) 2721.2 0.000000e+00 1628/1705 (95%) EPI602045 A/chicken/Dongguan/2818/2013 (A/H0) segment 4 (HA) 2721.2 0.000000e+00 1628/1705 (95%) EPI599333 A/silkie chicken/Dongguan/2809/2013 (A/H5N6) segment 4 (HA) 2721.2 0.000000e+00 1628/1705 (95%) EPI599327 A/duck/Dongguan/2685/2013 (A/H5N6) segment 4 (HA) 2721.2 0.000000e+00 1628/1705 (95%) EPI531456 A/duck/Guangdong/GD01/2014 (A/H5N6) segment 4 (HA) 2721.2 0.000000e+00 1628/1705 (95%) EPI736914 A/Changsha/1/2014 (A/H5N6) segment 4 (HA) 2717.5 0.000000e+00 1628/1705 (95%) EPI681285 A/duck/Zhejiang/727158/2014 (A/H5N6) segment 4 (HA) 2715.7 0.000000e+00 1628/1706 (95%) EPI602477 A/chicken/Shenzhen/715/2013 (A/H5N6) segment 4 (HA) 2715.7 0.000000e+00 1627/1705 (95%) EPI602094 A/chicken/Shenzhen/712/2013 (A/H0) segment 4 (HA) 2715.7 0.000000e+00 1626/1704 (95%) EPI599662 A/goose/Shantou/1806/2014 (A/H5N6) segment 4 (HA) 2715.7 0.000000e+00 1628/1706 (95%) EPI599655 A/goose/Shantou/1791/2014 (A/H5N6) segment 4 (HA) 2715.7 0.000000e+00 1628/1706 (95%) EPI599648 A/goose/Shantou/1763/2014 (A/H5N6) segment 4 (HA) 2715.7 0.000000e+00 1628/1706 (95%) EPI599285 A/chicken/Shenzhen/433/2013 (A/H5N6) segment 4 (HA) 2715.7 0.000000e+00 1627/1705 (95%) EPI530054 A/duck/Jiangxi/95/2014 (A/H5N6) segment 4 (HA) 2715.7 0.000000e+00 1627/1705 (95%) EPI645049 A/swine/Guangdong/1/2014 (A/H5N6) segment 4 (HA) 2713.8 0.000000e+00 1627/1705 (95%) EPI775291 A/duck/Guangzhou/021/2014 (A/H5N6) segment 4 (HA) 2710.2 0.000000e+00 1626/1705 (95%) EPI775283 A/duck/Guangzhou/018/2014 (A/H5N6) segment 4 (HA) 2710.2 0.000000e+00 1626/1705 (95%) EPI687547 A/Goose/ Guangdong /SSZYP/2015(H5N6) (A/H5N6) segment 4 (HA) 2710.2 0.000000e+00 1626/1705 (95%) EPI602103 A/chicken/Shenzhen/2072/2013 (A/H0) segment 4 (HA) 2710.2 0.000000e+00 1626/1705 (95%) EPI599346 A/chicken/Dongguan/4259/2013 (A/H5N6) segment 4 (HA) 2710.2 0.000000e+00 1626/1705 (95%) Link to comment Share on other sites More sharing options...
niman Posted November 24, 2016 Author Report Share Posted November 24, 2016 Descriptions Align Segment-ID Name Score E-Value Identity EPI861569 A/mute swan/Croatia/70/2016 (A/H5N8) segment 6 (NA) 2597.5 0.000000e+00 1406/1406 (100%) EPI861573 A/mute swan/Croatia/78/2016 (A/H5N8) segment 6 (NA) 2575.3 0.000000e+00 1402/1406 (99%) EPI860232 A/wild duck/Poland/82A/2016 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1399/1406 (99%) EPI859649 A/wild duck/Germany-BW/R8455/2016 (A/H5N8) segment 6 (NA) 2555.0 0.000000e+00 1398/1406 (99%) EPI836616 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI836608 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI823758 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI823750 A/wild duck/Tyva/35/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI823462 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI773759 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI859213 A/tufted_duck/Germany-SH/R8446/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI703648 A/duck/Eastern China/S1109/2014 (A/H5N8) segment 6 (NA) 2508.9 0.000000e+00 1390/1406 (98%) EPI703642 A/duck/Eastern China/S0215/2014 (A/H5N8) segment 6 (NA) 2475.6 0.000000e+00 1384/1406 (98%) EPI681357 A/goose/Zhejiang/925037/2014 (A/H5N8) segment 6 (NA) 2464.6 0.000000e+00 1382/1406 (98%) EPI681358 A/goose/Zhejiang/925104/2014 (A/H5N8) segment 6 (NA) 2442.4 0.000000e+00 1378/1406 (98%) EPI583873 A/duck/Shaoxing/5240/2013 (A/H0) segment 6 (NA) 2431.3 0.000000e+00 1376/1406 (97%) EPI591884 A/duck/Jiangxi/23970/2013 (A/H0) segment 6 (NA) 2425.8 0.000000e+00 1375/1406 (97%) EPI690794 A/goose/Jiangsu/QD5/2014 (A/H5N8) segment 6 (NA) 2420.2 0.000000e+00 1374/1406 (97%) EPI561493 A/Baikal teal/Korea/H52/2014 (A/H5N8) segment 6 (NA) 2420.2 0.000000e+00 1374/1406 (97%) EPI530990 A/duck/Zhejiang/6D18/2013 (A/H5N8) segment 6 (NA) 2420.2 0.000000e+00 1375/1407 (97%) EPI509700 A/breeder duck/Korea/Gochang1/2014 (A/H5N8) segment 6 (NA) 2420.2 0.000000e+00 1374/1406 (97%) EPI762160 A/goose/Eastern China/CZ/2013 (A/H5N8) segment 6 (NA) 2414.7 0.000000e+00 1373/1406 (97%) EPI703638 A/duck/Eastern China/S1210/2013 (A/H5N8) segment 6 (NA) 2414.7 0.000000e+00 1373/1406 (97%) EPI530989 A/duck/Zhejiang/W24/2013 (A/H5N8) segment 6 (NA) 2414.7 0.000000e+00 1374/1407 (97%) EPI690802 A/goose/Shandong/WFSG1/2014 (A/H5N8) segment 6 (NA) 2409.2 0.000000e+00 1372/1406 (97%) EPI681355 A/duck/Zhejiang/925019/2014 (A/H5N8) segment 6 (NA) 2409.2 0.000000e+00 1372/1406 (97%) EPI703635 A/duck/Eastern China/L1021/2012 (A/H5N8) segment 6 (NA) 2403.6 0.000000e+00 1371/1406 (97%) EPI681356 A/duck/Zhejiang/925169/2014 (A/H5N8) segment 6 (NA) 2403.6 0.000000e+00 1372/1407 (97%) EPI646030 A/goose/Jiangsu/WX202/2014 (A/H5N8) segment 6 (NA) 2398.1 0.000000e+00 1370/1406 (97%) EPI507675 A/mallard duck/Shanghai/SH-9/2013 (A/H5N8) segment 6 (NA) 2398.1 0.000000e+00 1371/1407 (97%) EPI602039 A/duck/Ningbo/3262/2013 (A/H0) segment 6 (NA) 2396.2 0.000000e+00 1351/1378 (98%) EPI762152 A/duck/Eastern China/JY/2014 (A/H5N8) segment 6 (NA) 2392.5 0.000000e+00 1369/1406 (97%) EPI703634 A/duck/Eastern China/L0722/2012 (A/H5N8) segment 6 (NA) 2392.5 0.000000e+00 1369/1406 (97%) EPI703633 A/duck/Eastern China/L0611/2011 (A/H5N8) segment 6 (NA) 2387.0 0.000000e+00 1369/1407 (97%) EPI703631 A/duck/Eastern China/L0405/2010 (A/H5N8) segment 6 (NA) 2387.0 0.000000e+00 1368/1406 (97%) EPI690810 A/goose/Yangzhou/0420/2014 (A/H5N8) segment 6 (NA) 2387.0 0.000000e+00 1368/1406 (97%) EPI703647 A/goose/Eastern China/S0408/2014 (A/H5N8) segment 6 (NA) 2381.5 0.000000e+00 1367/1406 (97%) EPI703632 A/duck/Eastern China/L0423/2011 (A/H5N8) segment 6 (NA) 2359.3 0.000000e+00 1358/1398 (97%) EPI442019 A/duck/Jiangsu/k1203/2010 (A/H5N8) segment 6 (NA) 2342.7 0.000000e+00 1353/1395 (96%) EPI544894 A/duck/Shandong/Q1/2013 (A/H5N8) segment 6 (NA) 2337.1 0.000000e+00 1360/1407 (96%) EPI561600 A/broiler duck/Korea/H133/2014 (A/H5N8) segment 6 (NA) 2331.6 0.000000e+00 1358/1406 (96%) EPI718279 A/ostrich/Korea/H829/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI703639 A/goose/Eastern China/L1204/2012 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI703637 A/goose/Eastern China/L1214/2012 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI703636 A/duck/Eastern China/L1120/2012 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI585633 A/baikal teal/Korea/2417/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI585632 A/baikal teal/Korea/2416/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI585630 A/baikal teal/Korea/2406/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI585629 A/baikal teal/Korea/2403/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI585628 A/baikal teal/Korea/2402/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI585626 A/baikal teal/Korea/1458/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI585624 A/baikal teal/Korea/1456/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI585623 A/baikal teal/Korea/1454/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI585620 A/baikal teal/Korea/1448/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI585619 A/baikal teal/Korea/1447/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI585617 A/baikal teal/Korea/1445/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI585616 A/baikal teal/Korea/1441/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI561692 A/common teal/Korea/H455-30/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI561676 A/bean goose/Korea/H328/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI561662 A/Korean native chicken/Korea/H257/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI561655 A/breeder chicken/Korea/H250/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI561648 A/breeder duck/Korea/H249/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI561635 A/white-fronted goose/Korea/H231/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI561628 A/mallard/Korea/H207/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI561621 A/breeder duck/Korea/H200/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI561614 A/breeder duck/Korea/H158/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI561579 A/breeder chicken/Korea/H122/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI561510 A/bean goose/Korea/H53/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI561362 A/broiler duck/Korea/H49/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI561355 A/broiler duck/Korea/H48/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI561350 A/broiler duck/Korea/H47/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI561343 A/Baikal teal/Korea/H41/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI561209 A/broiler duck/Korea/H31/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI561198 A/broiler duck/Korea/H29/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI509714 A/baikal teal/Korea/Donglim3/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI509706 A/broiler duck/Korea/Buan2/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI585627 A/baikal teal/Korea/2399/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1356/1406 (96%) EPI585625 A/baikal teal/Korea/1457/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1356/1406 (96%) EPI585622 A/baikal teal/Korea/1452/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1356/1406 (96%) EPI561707 A/bean goose/Korea/H40/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1356/1406 (96%) EPI561699 A/spot-billed duck/Korea/H455-42/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1356/1406 (96%) EPI561683 A/tundra swan/Korea/H411/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1356/1406 (96%) EPI561669 A/mallard/Korea/H297/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1356/1406 (96%) EPI561607 A/broiler duck/Korea/H145/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1356/1406 (96%) EPI561593 A/breeder duck/Korea/H128/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1356/1406 (96%) EPI561572 A/Baikal teal/Korea/H96/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1356/1406 (96%) EPI561565 A/Baikal teal/Korea/H84/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1356/1406 (96%) EPI561558 A/Coot/Korea/H81/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1357/1407 (96%) EPI561551 A/Baikal teal/Korea/H80/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1357/1407 (96%) EPI561544 A/Baikal teal/Korea/H68/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1356/1406 (96%) EPI561531 A/Baikal teal/Korea/H66/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1356/1406 (96%) EPI561524 A/broiler duck/Korea/H65/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1356/1406 (96%) EPI561517 A/Baikal teal/Korea/H62/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1356/1406 (96%) EPI552748 A/turkey/Germany/AR2485-86-L00899/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1356/1406 (96%) EPI548495 A/duck/Chiba/26-372-61/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1357/1407 (96%) EPI548487 A/duck/Chiba/26-372-48/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1357/1407 (96%) EPI544759 A/turkey/Germany-MV/R2472/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1356/1406 (96%) EPI624533 A/scarlet_ibis/Germany/AR44-L01279/2015 (A/H5N8) segment 6 (NA) 2315.0 0.000000e+00 1355/1406 (96%) EPI585631 A/baikal teal/Korea/2414/2014 (A/H5N8) segment 6 (NA) 2315.0 0.000000e+00 1355/1406 (96%) EPI585621 A/baikal teal/Korea/1449/2014 (A/H5N8) segment 6 (NA) 2315.0 0.000000e+00 1355/1406 (96%) Link to comment Share on other sites More sharing options...
niman Posted November 24, 2016 Author Report Share Posted November 24, 2016 Align Segment-ID Name Score E-Value Identity EPI861570 A/mute swan/Croatia/70/2016 (A/H5N8) segment 7 (MP) 1807.1 0.000000e+00 978/978 (100%) EPI860237 A/wild duck/Poland/82A/2016 (A/H5N8) segment 7 (MP) 1785.0 0.000000e+00 974/978 (99%) EPI773760 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 7 (MP) 1783.1 0.000000e+00 973/977 (99%) EPI823751 A/wild duck/Tyva/35/2016 (A/H5N8) segment 7 (MP) 1768.4 0.000000e+00 971/978 (99%) EPI823463 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 7 (MP) 1768.4 0.000000e+00 971/978 (99%) EPI836617 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 7 (MP) 1762.8 0.000000e+00 970/978 (99%) EPI823759 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 7 (MP) 1762.8 0.000000e+00 970/978 (99%) EPI836609 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 7 (MP) 1757.3 0.000000e+00 969/978 (99%) EPI704539 A/duck/Mongolia/709/2015 (A/H10N7) segment 7 (MP) 1718.5 0.000000e+00 962/978 (98%) EPI704531 A/duck/Mongolia/626/2015 (A/H10N7) segment 7 (MP) 1718.5 0.000000e+00 962/978 (98%) EPI704515 A/duck/Mongolia/499/2015 (A/H10N7) segment 7 (MP) 1718.5 0.000000e+00 962/978 (98%) EPI704343 A/duck/Mongolia/179/2015 (A/H3N8) segment 7 (MP) 1718.5 0.000000e+00 962/978 (98%) EPI704335 A/duck/Mongolia/173/2015 (A/H3N8) segment 7 (MP) 1718.5 0.000000e+00 962/978 (98%) EPI692379 A/duck/Chongqing/S2086/2012 (A/H4N8) segment 7 (MP) 1713.0 0.000000e+00 961/978 (98%) EPI682954 A/wild bird/Wuhan/CDHN15/2015 (A/H6N2) segment 7 (MP) 1707.4 0.000000e+00 960/978 (98%) EPI682953 A/wild bird/Wuhan/CDHN09/2015 (A/H6N2) segment 7 (MP) 1707.4 0.000000e+00 960/978 (98%) EPI590050 A/duck/Vietnam/LBM798/2014 (A/H3N6) segment 7 (MP) 1707.4 0.000000e+00 960/978 (98%) EPI467812 A/European teal/Chany/63/2011 (A/H3N8) segment 7 (MP) 1707.4 0.000000e+00 960/978 (98%) EPI461550 A/duck/Hunan/S11090/2012 (A/H4N6) segment 7 (MP) 1701.9 0.000000e+00 959/978 (98%) EPI682981 A/duck/Wuhan/WHYF05/2014 (A/H9N2) segment 7 (MP) 1696.3 0.000000e+00 959/979 (97%) EPI704449 A/duck/Mongolia/996/2015 (A/H3N8) segment 7 (MP) 1690.8 0.000000e+00 957/978 (97%) EPI704417 A/duck/Mongolia/543/2015 (A/H4N6) segment 7 (MP) 1690.8 0.000000e+00 957/978 (97%) EPI601676 A/duck/Jiangxi/34864/2013 (A/H0) segment 7 (MP) 1690.8 0.000000e+00 957/978 (97%) EPI599826 A/duck/Jiangxi/32213/2013 (A/H7N6) segment 7 (MP) 1690.8 0.000000e+00 957/978 (97%) EPI548388 A/chicken/Jilin/SD001/2014 (A/H9N2) segment 7 (MP) 1687.1 0.000000e+00 956/978 (97%) EPI682951 A/wild bird/Wuhan/CDHN173/2015 (A/H11N9) segment 7 (MP) 1685.3 0.000000e+00 956/978 (97%) EPI682950 A/wild bird/Wuhan/CDHN22/2015 (A/H11N9) segment 7 (MP) 1685.3 0.000000e+00 956/978 (97%) EPI682949 A/wild bird/Wuhan/CDHN01/2015 (A/H11N9) segment 7 (MP) 1685.3 0.000000e+00 956/978 (97%) EPI590087 A/duck/Quang Ninh/90c112/2013 (A/H3N2) segment 7 (MP) 1685.3 0.000000e+00 956/978 (97%) EPI773768 A/chicken/Netherlands/16007311-037041/2016 (A/H7N9) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI753587 A/duck/Hokkaido/W9/2015 (A/H1N1) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI704294 A/duck/Mongolia/127/2015 (A/H4N6) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI704270 A/duck/Mongolia/101/2015 (A/H4N6) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI602450 A/duck/Jiangxi/33665/2013 (A/H10N3) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI602443 A/duck/Jiangxi/33663/2013 (A/H10N3) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI602436 A/duck/Jiangxi/33651/2013 (A/H10N3) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI602429 A/duck/Jiangxi/33637/2013 (A/H10N3) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI602405 A/duck/Jiangxi/33759/2013 (A/H10N3) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI602398 A/duck/Jiangxi/33757/2013 (A/H10N3) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI602391 A/duck/Jiangxi/33753/2013 (A/H10N3) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI602384 A/duck/Jiangxi/33713/2013 (A/H10N3) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI602377 A/duck/Jiangxi/33699/2013 (A/H10N3) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI602370 A/duck/Jiangxi/33695/2013 (A/H10N3) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI602352 A/duck/Jiangxi/33777/2013 (A/H10N3) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI602345 A/duck/Jiangxi/33775/2013 (A/H10N3) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI602338 A/duck/Jiangxi/33769/2013 (A/H10N3) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI602331 A/duck/Jiangxi/33765/2013 (A/H10N3) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI602324 A/duck/Jiangxi/33763/2013 (A/H10N3) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI601720 A/duck/Jiangxi/29297/2013 (A/H0) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI599882 A/duck/Jiangxi/33779/2013 (A/H10N3) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI599875 A/duck/Jiangxi/33778/2013 (A/H10N3) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI599868 A/duck/Jiangxi/33747/2013 (A/H10N3) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI599861 A/duck/Jiangxi/33744/2013 (A/H10N3) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI599854 A/duck/Jiangxi/33701/2013 (A/H10N3) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI599847 A/duck/Jiangxi/33653/2013 (A/H10N3) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI599840 A/duck/Jiangxi/33641/2013 (A/H10N3) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI599833 A/duck/Jiangxi/33629/2013 (A/H10N3) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI704506 A/duck/Mongolia/326/2015 (A/H10N3) segment 7 (MP) 1674.2 0.000000e+00 955/979 (97%) EPI704498 A/duck/Mongolia/245/2015 (A/H10N3) segment 7 (MP) 1674.2 0.000000e+00 955/979 (97%) EPI704302 A/duck/Mongolia/141/2015 (A/H0N2) segment 7 (MP) 1674.2 0.000000e+00 955/979 (97%) EPI692667 A/chicken/Vietnam/HU1-976/2014 (A/H9N2) segment 7 (MP) 1674.2 0.000000e+00 954/978 (97%) EPI372429 A/shoveler/Egypt/00004-NAMRU3/2007 (A/H10N9) segment 7 (MP) 1674.2 0.000000e+00 955/979 (97%) EPI372421 A/teal/Egypt/01207-NAMRU3/2007 (A/H10N7) segment 7 (MP) 1674.2 0.000000e+00 955/979 (97%) EPI363933 A/duck/Guizhou/1560/2007 (A/H6N8) segment 7 (MP) 1674.2 0.000000e+00 955/979 (97%) EPI316755 A/mallard/Czech Republic/13438-29K/2010 (A/H11N9) segment 7 (MP) 1674.2 0.000000e+00 954/978 (97%) EPI306424 A/shoveler/Koymor/118/2009 (A/H3) segment 7 (MP) 1674.2 0.000000e+00 954/978 (97%) EPI841782 A/chicken/Wales/600-020823/2014 (A/H4N6) segment 7 (MP) 1668.6 0.000000e+00 954/979 (97%) EPI693701 A/duck/Mongolia/20/2015 (A/H3N8) segment 7 (MP) 1668.6 0.000000e+00 953/978 (97%) EPI514272 A/mallard/Sweden/52334/2006 (A/H4N6) segment 7 (MP) 1668.6 0.000000e+00 954/979 (97%) EPI514029 A/mallard/Sweden/68575/2007 (A/H4N6) segment 7 (MP) 1668.6 0.000000e+00 954/979 (97%) EPI439562 A/avian/Israel/824/2005 (A/H10N2) segment 7 (MP) 1668.6 0.000000e+00 954/979 (97%) EPI248496 A/mallard/Germany-RP/R193/09 (A/H1N1) segment 7 (MP) 1668.6 0.000000e+00 954/979 (97%) EPI190341 A/mallard/Netherlands/1/2006 (A/H8N4) segment 7 (MP) 1668.6 0.000000e+00 954/979 (97%) EPI685607 A/duck/Vietnam/HU1-151/2014 (A/H11N7) segment 7 (MP) 1663.1 0.000000e+00 952/978 (97%) EPI647783 A/duck/Vietnam/HU1-148/2014 (A/H11N7) segment 7 (MP) 1663.1 0.000000e+00 952/978 (97%) EPI647782 A/duck/Vietnam/HU1-16/2014 (A/H11N7) segment 7 (MP) 1663.1 0.000000e+00 952/978 (97%) EPI647780 A/muscovy duck/Vietnam/HU1-399/2014 (A/H11N7) segment 7 (MP) 1663.1 0.000000e+00 952/978 (97%) EPI619262 A/mallard/Sweden/60041/2007 (A/H8N2) segment 7 (MP) 1663.1 0.000000e+00 953/979 (97%) EPI618959 A/mallard/Sweden/1417/2002 (A/H10N7) segment 7 (MP) 1663.1 0.000000e+00 953/979 (97%) EPI513559 A/mallard/Sweden/101180/2009 (A/H4N6) segment 7 (MP) 1663.1 0.000000e+00 953/979 (97%) EPI513552 A/mallard/Sweden/101081/2009 (A/H4N6) segment 7 (MP) 1663.1 0.000000e+00 953/979 (97%) EPI513538 A/mallard/Sweden/100881/2009 (A/H4N6) segment 7 (MP) 1663.1 0.000000e+00 953/979 (97%) EPI513499 A/mallard/Sweden/101431/2009 (A/H4N6) segment 7 (MP) 1663.1 0.000000e+00 953/979 (97%) EPI513485 A/mallard/Sweden/101298/2009 (A/H4N6) segment 7 (MP) 1663.1 0.000000e+00 953/979 (97%) EPI377995 A/common teal/Netherlands/2/2008 (A/H2N3) segment 7 (MP) 1663.1 0.000000e+00 953/979 (97%) EPI372437 A/shoveler/Egypt/00006-NAMRU3/2007 (A/H10N1) segment 7 (MP) 1663.1 0.000000e+00 953/979 (97%) EPI372413 A/shoveler/Egypt/00241-NAMRU3/2007 (A/H7N3) segment 7 (MP) 1663.1 0.000000e+00 953/979 (97%) EPI372405 A/shoveler/Egypt/00215-NAMRU3/2007 (A/H7N9) segment 7 (MP) 1663.1 0.000000e+00 953/979 (97%) EPI372397 A/shoveler/Egypt/01198-NAMRU3/2007 (A/H10N7) segment 7 (MP) 1663.1 0.000000e+00 953/979 (97%) EPI296609 A/mallard/Sweden/90/2005 (A/H11N9) segment 7 (MP) 1663.1 0.000000e+00 953/979 (97%) EPI231188 A/spot-billed duck/Korea/540/2008 (A/H6N1) segment 7 (MP) 1663.1 0.000000e+00 953/979 (97%) EPI220565 A/mallard/Czech Republic/15307-17/2008 (A/H0) segment 7 (MP) 1663.1 0.000000e+00 953/979 (97%) EPI190357 A/gadwall/Netherlands/1/2006 (A/H9N2) segment 7 (MP) 1663.1 0.000000e+00 953/979 (97%) EPI181962 A/mallard/Netherlands/2/2005 (A/H4N2) segment 7 (MP) 1663.1 0.000000e+00 953/979 (97%) EPI619147 A/mallard/Sweden/50055/2006 (A/H8N4) segment 7 (MP) 1657.6 0.000000e+00 952/979 (97%) EPI619097 A/mallard/Sweden/68537/2007 (A/H0) segment 7 (MP) 1657.6 0.000000e+00 952/979 (97%) EPI618547 A/mallard/Sweden/58705/2006 (A/H5N2) segment 7 (MP) 1657.6 0.000000e+00 952/979 (97%) EPI618488 A/mallard/Sweden/101589/2009 (A/H11N9) segment 7 (MP) 1657.6 0.000000e+00 952/979 (97%) EPI559668 A/harbour seal/Germany/1/2014 (A/H10N7) segment 7 (MP) 1657.6 0.000000e+00 952/979 (97%) EPI544354 A/harbour seal/Germany/1/2014 (A/H10N7) segment 7 (MP) 1657.6 0.000000e+00 952/979 (97%) Link to comment Share on other sites More sharing options...
niman Posted November 24, 2016 Author Report Share Posted November 24, 2016 Descriptions Align Segment-ID Name Score E-Value Identity EPI861571 A/mute swan/Croatia/70/2016 (A/H5N8) segment 8 (NS) 1530.1 0.000000e+00 838/838 (100%) EPI860238 A/wild duck/Poland/82A/2016 (A/H5N8) segment 8 (NS) 1508.0 0.000000e+00 827/835 (99%) EPI836618 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 8 (NS) 1508.0 0.000000e+00 829/838 (98%) EPI836610 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 8 (NS) 1508.0 0.000000e+00 829/838 (98%) EPI823760 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 8 (NS) 1508.0 0.000000e+00 829/838 (98%) EPI823752 A/wild duck/Tyva/35/2016 (A/H5N8) segment 8 (NS) 1508.0 0.000000e+00 829/838 (98%) EPI823464 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 8 (NS) 1508.0 0.000000e+00 829/838 (98%) EPI773761 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 8 (NS) 1502.4 0.000000e+00 828/838 (98%) EPI703688 A/duck/Eastern China/S1109/2014 (A/H5N8) segment 8 (NS) 1491.4 0.000000e+00 826/838 (98%) EPI690812 A/goose/Yangzhou/0420/2014 (A/H5N8) segment 8 (NS) 1476.6 0.000000e+00 823/837 (98%) EPI764785 A/duck/Shaoxing/5240/2013 (A/H0) segment 8 (NS) 1465.5 0.000000e+00 821/837 (98%) EPI690804 A/goose/Shandong/WFSG1/2014 (A/H5N8) segment 8 (NS) 1465.5 0.000000e+00 821/837 (98%) EPI690796 A/goose/Jiangsu/QD5/2014 (A/H5N8) segment 8 (NS) 1465.5 0.000000e+00 821/837 (98%) EPI530993 A/duck/Zhejiang/W24/2013 (A/H5N8) segment 8 (NS) 1460.0 0.000000e+00 820/837 (97%) EPI703682 A/duck/Eastern China/S0215/2014 (A/H5N8) segment 8 (NS) 1458.1 0.000000e+00 821/839 (97%) EPI762162 A/goose/Eastern China/CZ/2013 (A/H5N8) segment 8 (NS) 1448.9 0.000000e+00 818/837 (97%) EPI602042 A/duck/Ningbo/3262/2013 (A/H0) segment 8 (NS) 1448.9 0.000000e+00 818/837 (97%) EPI643151 A/Environment/Guangdong/GZ55/2013(H5N8) (A/H5N8) segment 8 (NS) 1443.4 0.000000e+00 818/838 (97%) EPI561505 A/Baikal teal/Korea/H52/2014 (A/H5N8) segment 8 (NS) 1443.4 0.000000e+00 817/837 (97%) EPI530994 A/duck/Zhejiang/6D18/2013 (A/H5N8) segment 8 (NS) 1443.4 0.000000e+00 817/837 (97%) EPI509710 A/breeder duck/Korea/Gochang1/2014 (A/H5N8) segment 8 (NS) 1443.4 0.000000e+00 817/837 (97%) EPI507677 A/mallard duck/Shanghai/SH-9/2013 (A/H5N8) segment 8 (NS) 1443.4 0.000000e+00 818/838 (97%) EPI703687 A/goose/Eastern China/S0408/2014 (A/H5N8) segment 8 (NS) 1441.5 0.000000e+00 818/839 (97%) EPI762154 A/duck/Eastern China/JY/2014 (A/H5N8) segment 8 (NS) 1437.8 0.000000e+00 816/837 (97%) EPI703679 A/duck/Eastern China/S1210/2013 (A/H5N8) segment 8 (NS) 1437.8 0.000000e+00 816/837 (97%) EPI681416 A/goose/Zhejiang/925104/2014 (A/H5N8) segment 8 (NS) 1437.8 0.000000e+00 816/837 (97%) EPI681415 A/goose/Zhejiang/925037/2014 (A/H5N8) segment 8 (NS) 1432.3 0.000000e+00 815/837 (97%) EPI681406 A/goose/Zhejiang/925106/2014 (A/H5N6) segment 8 (NS) 1432.3 0.000000e+00 815/837 (97%) EPI646032 A/goose/Jiangsu/WX202/2014 (A/H5N8) segment 8 (NS) 1410.1 0.000000e+00 811/837 (96%) EPI681414 A/duck/Zhejiang/925169/2014 (A/H5N8) segment 8 (NS) 1404.6 0.000000e+00 810/837 (96%) EPI681413 A/duck/Zhejiang/925019/2014 (A/H5N8) segment 8 (NS) 1404.6 0.000000e+00 810/837 (96%) EPI461611 A/duck/Hunan/S11643/2012 (A/H4N9) segment 8 (NS) 1402.7 0.000000e+00 811/839 (96%) EPI461603 A/duck/Hunan/S11547/2012 (A/H4N9) segment 8 (NS) 1402.7 0.000000e+00 811/839 (96%) EPI837813 A/environment/Korea/W136/2006 (A/H7N7) segment 8 (NS) 1388.0 0.000000e+00 807/837 (96%) EPI470634 A/duck/Jiangxi/21714/2011 (A/H11N9) segment 8 (NS) 1388.0 0.000000e+00 807/837 (96%) EPI392653 A/wild bird/Korea/A72/10 (A/H7N7) segment 8 (NS) 1388.0 0.000000e+00 807/837 (96%) EPI299310 A/avian/Japan/8KI0068/2008 (A/H3N6) segment 8 (NS) 1388.0 0.000000e+00 807/837 (96%) EPI837815 A/environment/Korea/W148/2006 (A/H7N7) segment 8 (NS) 1382.4 0.000000e+00 806/837 (96%) EPI837814 A/environment/Korea/W143/2006 (A/H7N7) segment 8 (NS) 1382.4 0.000000e+00 806/837 (96%) EPI470663 A/northern shoveler/Hong Kong/MPK276/2009 (A/H11N9) segment 8 (NS) 1382.4 0.000000e+00 806/837 (96%) EPI387512 A/ruddy shelduck/Mongolia/2-79/2007 (A/H3N8) segment 8 (NS) 1382.4 0.000000e+00 806/837 (96%) EPI387496 A/pintail/Mongolia/2-65/2007 (A/H3N8) segment 8 (NS) 1382.4 0.000000e+00 806/837 (96%) EPI363934 A/duck/Guizhou/1560/2007 (A/H6N8) segment 8 (NS) 1382.4 0.000000e+00 806/837 (96%) EPI314535 A/avian/Japan/8KI0184/2008 (A/H4N6) segment 8 (NS) 1382.4 0.000000e+00 806/837 (96%) EPI299262 A/avian/Japan/8KI0185/2008 (A/H4N6) segment 8 (NS) 1382.4 0.000000e+00 806/837 (96%) EPI299254 A/avian/Japan/8KI0195/2008 (A/H6N8) segment 8 (NS) 1382.4 0.000000e+00 806/837 (96%) EPI284654 A/duck/Hunan/8-19/2009 (A/H4N2) segment 8 (NS) 1382.4 0.000000e+00 806/837 (96%) EPI268628 A/duck/Fujian/12035/2005 (A/H6N6) segment 8 (NS) 1382.4 0.000000e+00 806/837 (96%) EPI230017 A/red crested pochard/Mongolia/1915/2006 (A/H3N6) segment 8 (NS) 1382.4 0.000000e+00 806/837 (96%) EPI461791 A/environment/Hunan/S11511/2012 (A/H4N9) segment 8 (NS) 1380.6 0.000000e+00 807/839 (96%) EPI446539 A/environment/Jiangxi/28/2009 (A/H11N9) segment 8 (NS) 1376.9 0.000000e+00 805/837 (96%) EPI420071 A/mallard/California/2578V/2011 (A/H0) segment 8 (NS) 1376.9 0.000000e+00 805/837 (96%) EPI419972 A/mallard/California/2563V/2011 (A/H4N6) segment 8 (NS) 1376.9 0.000000e+00 805/837 (96%) EPI419965 A/mallard/California/2563P/2011 (A/H4N6) segment 8 (NS) 1376.9 0.000000e+00 805/837 (96%) EPI419907 A/mallard/California/2552V/2011 (A/H4N8) segment 8 (NS) 1376.9 0.000000e+00 805/837 (96%) EPI446518 A/environment/Jiangxi/26/2009 (A/H11N9) segment 8 (NS) 1375.0 0.000000e+00 804/836 (96%) EPI837810 A/aquatic bird/Korea/w44/2005 (A/H7N3) segment 8 (NS) 1371.3 0.000000e+00 804/837 (96%) EPI589175 A/duck/China/J1/2012 (A/H4N6) segment 8 (NS) 1371.3 0.000000e+00 804/837 (96%) EPI540193 A/duck/Bangladesh/1753/2010 (A/H11N3) segment 8 (NS) 1371.3 0.000000e+00 804/837 (96%) EPI508167 A/wild duck/Korea/CSM27-12/2009 (A/H7N6) segment 8 (NS) 1371.3 0.000000e+00 804/837 (96%) EPI504039 A/wild duck/SH17-1/2008 (A/H2N3) segment 8 (NS) 1371.3 0.000000e+00 804/837 (96%) EPI420126 A/mallard/California/2594V/2011 (A/H4N6) segment 8 (NS) 1371.3 0.000000e+00 804/837 (96%) EPI420119 A/mallard/California/2594P/2011 (A/H4N6) segment 8 (NS) 1371.3 0.000000e+00 804/837 (96%) EPI384049 A/duck/Thailand/CU-LM7288T/2010 (A/H7N6) segment 8 (NS) 1371.3 0.000000e+00 804/837 (96%) EPI384039 A/duck/Thailand/CU-LM7288C/2010 (A/H7N6) segment 8 (NS) 1371.3 0.000000e+00 804/837 (96%) EPI384017 A/duck/Thailand/CU-LM7283C/2010 (A/H7N6) segment 8 (NS) 1371.3 0.000000e+00 804/837 (96%) EPI383995 A/duck/Thailand/CU-LM7283T/2010 (A/H7N6) segment 8 (NS) 1371.3 0.000000e+00 804/837 (96%) EPI383983 A/duck/Thailand/CU-LM7285C/2010 (A/H7N6) segment 8 (NS) 1371.3 0.000000e+00 804/837 (96%) EPI383953 A/duck/Thailand/CU-LM7280C/2010 (A/H7N6) segment 8 (NS) 1371.3 0.000000e+00 804/837 (96%) EPI383937 A/duck/Thailand/CU-LM7284C/2010 (A/H7N6) segment 8 (NS) 1371.3 0.000000e+00 804/837 (96%) EPI276132 A/pintail/Akita/1364/2008 (A/H1N2) segment 8 (NS) 1371.3 0.000000e+00 804/837 (96%) EPI276127 A/pintail/Akita/1353/2008 (A/H1N2) segment 8 (NS) 1371.3 0.000000e+00 804/837 (96%) EPI760217 A/duck/Hunan/161/2015 (A/H3N6) segment 8 (NS) 1365.8 0.000000e+00 803/837 (95%) EPI470632 A/duck/Jiangxi/22041/2008 (A/H4N9) segment 8 (NS) 1365.8 0.000000e+00 803/837 (95%) EPI439096 A/chicken/Taiwan/TC149/2010 (A/H4) segment 8 (NS) 1365.8 0.000000e+00 803/837 (95%) EPI419937 A/mallard/California/2555V/2011 (A/H11N9) segment 8 (NS) 1365.8 0.000000e+00 803/837 (95%) EPI419819 A/mallard/California/2533V/2011 (A/H4N6) segment 8 (NS) 1365.8 0.000000e+00 803/837 (95%) EPI419777 A/mallard/California/2525P/2011 (A/H4N6) segment 8 (NS) 1365.8 0.000000e+00 803/837 (95%) EPI418438 A/mallard/California/2525V/2011 (A/H0) segment 8 (NS) 1365.8 0.000000e+00 803/837 (95%) EPI392651 A/wild bird/Korea/A330/09 (A/H7N7) segment 8 (NS) 1365.8 0.000000e+00 804/838 (95%) EPI392650 A/wild bird/Korea/A331/09 (A/H7N7) segment 8 (NS) 1365.8 0.000000e+00 804/838 (95%) EPI383969 A/duck/Thailand/CU-LM7279T/2010 (A/H7N6) segment 8 (NS) 1365.8 0.000000e+00 803/837 (95%) EPI276122 A/pintail/Akita/1265/2008 (A/H1N2) segment 8 (NS) 1365.8 0.000000e+00 803/837 (95%) EPI276117 A/pintail/Miyagi/1472/2008 (A/H1N1) segment 8 (NS) 1365.8 0.000000e+00 803/837 (95%) EPI268476 A/mallard/Jiangxi/13228/2005 (A/H6N1) segment 8 (NS) 1365.8 0.000000e+00 803/837 (95%) EPI692476 A/duck/Henan/S4179/2009 (A/H4N6) segment 8 (NS) 1360.3 0.000000e+00 802/837 (95%) EPI527757 A/mallard/San Jiang/275/2007 (A/H6N1) segment 8 (NS) 1360.3 0.000000e+00 802/837 (95%) EPI471877 A/duck/Guangxi/GXd-6/2010 (A/H6N8) segment 8 (NS) 1360.3 0.000000e+00 802/837 (95%) EPI470648 A/duck/Jiangxi/3292/2009 (A/H7N9) segment 8 (NS) 1360.3 0.000000e+00 802/837 (95%) EPI470642 A/duck/Jiangxi/3257/2009 (A/H7N9) segment 8 (NS) 1360.3 0.000000e+00 802/837 (95%) EPI470641 A/duck/Jiangxi/3152/2009 (A/H7N9) segment 8 (NS) 1360.3 0.000000e+00 802/837 (95%) EPI470635 A/duck/Jiangxi/3283/2009 (A/H7N9) segment 8 (NS) 1360.3 0.000000e+00 802/837 (95%) EPI470604 A/duck/Jiangxi/3286/2009 (A/H7N9) segment 8 (NS) 1360.3 0.000000e+00 802/837 (95%) EPI470603 A/duck/Jiangxi/3230/2009 (A/H7N9) segment 8 (NS) 1360.3 0.000000e+00 802/837 (95%) EPI470602 A/duck/Jiangxi/3214/2009 (A/H7N9) segment 8 (NS) 1360.3 0.000000e+00 802/837 (95%) EPI470601 A/duck/Jiangxi/3190/2009 (A/H7N9) segment 8 (NS) 1360.3 0.000000e+00 802/837 (95%) EPI470600 A/duck/Jiangxi/3169/2009 (A/H7N9) segment 8 (NS) 1360.3 0.000000e+00 802/837 (95%) EPI470599 A/duck/Jiangxi/3141/2009 (A/H7N9) segment 8 (NS) 1360.3 0.000000e+00 802/837 (95%) EPI470598 A/duck/Jiangxi/3096/2009 (A/H7N9) segment 8 (NS) 1360.3 0.000000e+00 802/837 (95%) EPI419951 A/mallard/California/2559P/2011 (A/H5N8) segment 8 (NS) 1360.3 0.000000e+00 802/837 (95%) Link to comment Share on other sites More sharing options...
niman Posted November 24, 2016 Author Report Share Posted November 24, 2016 Isolate name: A/mute swan/Croatia/78/2016 Isolate ID: EPI_ISL_238197 Passage details/history: 0 Type: A / H5N8 Lineage: Sample information Collection date: 2016-11-12 Host Cygnus cygnus Additional host information: Domestic status: Wild Is vaccinated: Location: Croatia / Osjecko-Baranjska Zupanija Additional location information: Bijelo Brdo Health status: Dead Specimen source: Organ Strain or commercial product name used for vaccination: Institute information Originating lab: Sample ID given by the sample provider: Address: Submitting lab: Croatian Veterinary Institute Sample ID given by the submitting laboratory: Authors: Address: Croatian Veterinary Institute Poultry Centre Heinzelova 55 10000 Zagreb Croatia Publication Publication In vivo antiviral resistance Phenotype Genotype Unspecified Antiviral resistance tested by experimental procedures Adamantanes: Unknown Oseltamivir: Unknown Zanamivir: Unknown Peramivir: Unknown Other: Unknown Additional information Antigenic characterization: Note: Sequence segment identifier length accession # INSDC Sequence HA A/mute swan/Croatia/78/2016 1742 EPI861572 NA A/mute swan/Croatia/78/2016 1425 EPI861573 Submitter information Submitter: Savić, Vladimir Submission Date: 2016-11-24 Last modifier: Savić, Vladimir Last modified: 2016-11-24 Address: Croatian Veterinary Institute Poultry Centre Heinzelova 55 10000 Zagreb Croatia Link to comment Share on other sites More sharing options...
niman Posted November 24, 2016 Author Report Share Posted November 24, 2016 Align Segment-ID Name Score E-Value Identity EPI861572 A/mute swan/Croatia/78/2016 (A/H5N8) segment 4 (HA) 3147.8 0.000000e+00 1704/1704 (100%) EPI861568 A/mute swan/Croatia/70/2016 (A/H5N8) segment 4 (HA) 3142.3 0.000000e+00 1703/1704 (99%) EPI859212 A/tufted_duck/Germany-SH/R8446/2016 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI836614 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI836606 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI823756 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI823748 A/wild duck/Tyva/35/2016 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI823460 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI773757 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1695/1705 (99%) EPI859650 A/wild duck/Germany-BW/R8455/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI860231 A/wild duck/Poland/82A/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI703608 A/duck/Eastern China/S1109/2014 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI681300 A/goose/Zhejiang/925104/2014 (A/H5N8) segment 4 (HA) 2987.2 0.000000e+00 1675/1704 (98%) EPI681299 A/goose/Zhejiang/925037/2014 (A/H5N8) segment 4 (HA) 2987.2 0.000000e+00 1675/1704 (98%) EPI703602 A/duck/Eastern China/S0215/2014 (A/H5N8) segment 4 (HA) 2976.1 0.000000e+00 1673/1704 (98%) EPI681290 A/goose/Zhejiang/925106/2014 (A/H5N6) segment 4 (HA) 2965.0 0.000000e+00 1671/1704 (98%) EPI509698 A/breeder duck/Korea/Gochang1/2014 (A/H5N8) segment 4 (HA) 2953.9 0.000000e+00 1669/1704 (97%) EPI561495 A/Baikal teal/Korea/H52/2014 (A/H5N8) segment 4 (HA) 2942.8 0.000000e+00 1667/1704 (97%) EPI591879 A/duck/Jiangxi/23970/2013 (A/H0) segment 4 (HA) 2937.3 0.000000e+00 1666/1704 (97%) EPI703599 A/duck/Eastern China/S1210/2013 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1665/1704 (97%) EPI690792 A/goose/Jiangsu/QD5/2014 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1665/1704 (97%) EPI762158 A/goose/Eastern China/CZ/2013 (A/H5N8) segment 4 (HA) 2926.2 0.000000e+00 1664/1704 (97%) EPI703607 A/goose/Eastern China/S0408/2014 (A/H5N8) segment 4 (HA) 2926.2 0.000000e+00 1664/1704 (97%) EPI690808 A/goose/Yangzhou/0420/2014 (A/H5N8) segment 4 (HA) 2926.2 0.000000e+00 1665/1705 (97%) EPI690800 A/goose/Shandong/WFSG1/2014 (A/H5N8) segment 4 (HA) 2926.2 0.000000e+00 1664/1704 (97%) EPI602037 A/duck/Ningbo/3262/2013 (A/H0) segment 4 (HA) 2920.7 0.000000e+00 1663/1704 (97%) EPI583870 A/duck/Shaoxing/5240/2013 (A/H0) segment 4 (HA) 2920.7 0.000000e+00 1663/1704 (97%) EPI530985 A/duck/Zhejiang/W24/2013 (A/H5N8) segment 4 (HA) 2920.7 0.000000e+00 1663/1704 (97%) EPI762150 A/duck/Eastern China/JY/2014 (A/H5N8) segment 4 (HA) 2915.1 0.000000e+00 1663/1705 (97%) EPI530986 A/duck/Zhejiang/6D18/2013 (A/H5N8) segment 4 (HA) 2915.1 0.000000e+00 1662/1704 (97%) EPI507673 A/mallard duck/Shanghai/SH-9/2013 (A/H5N8) segment 4 (HA) 2915.1 0.000000e+00 1662/1704 (97%) EPI860239 A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1598/1609 (99%) EPI703595 A/duck/Eastern China/L1021/2012 (A/H5N8) segment 4 (HA) 2909.6 0.000000e+00 1661/1704 (97%) EPI681280 A/goose/Zhejiang/77166/2014 (A/H5N2) segment 4 (HA) 2905.9 0.000000e+00 1659/1702 (97%) EPI646105 A/goose/Jiangsu/WX202/2014 (A/H5N8) segment 4 (HA) 2898.5 0.000000e+00 1659/1704 (97%) EPI681298 A/duck/Zhejiang/925169/2014 (A/H5N8) segment 4 (HA) 2893.0 0.000000e+00 1659/1705 (97%) EPI703593 A/duck/Eastern China/L0611/2011 (A/H5N8) segment 4 (HA) 2887.4 0.000000e+00 1657/1704 (97%) EPI682915 A/duck/Wenzhou/YHQL22/2014 (A/H5N6) segment 4 (HA) 2887.4 0.000000e+00 1657/1704 (97%) EPI703592 A/duck/Eastern China/L0423/2011 (A/H5N8) segment 4 (HA) 2881.9 0.000000e+00 1656/1704 (97%) EPI681297 A/duck/Zhejiang/925019/2014 (A/H5N8) segment 4 (HA) 2881.9 0.000000e+00 1657/1705 (97%) EPI593747 A/goose/Shandong/k1201/2009 (A/H5N1) segment 4 (HA) 2876.4 0.000000e+00 1655/1704 (97%) EPI442017 A/duck/Jiangsu/k1203/2010 (A/H5N8) segment 4 (HA) 2876.4 0.000000e+00 1655/1704 (97%) EPI703594 A/duck/Eastern China/L0722/2012 (A/H5N8) segment 4 (HA) 2865.3 0.000000e+00 1653/1704 (97%) EPI643147 A/Environment/Guangdong/GZ55/2013(H5N8) (A/H5N8) segment 4 (HA) 2859.7 0.000000e+00 1650/1707 (96%) EPI475579 A/wild duck/Shandong/628/2011 (A/H5N1) segment 4 (HA) 2848.7 0.000000e+00 1650/1704 (96%) EPI703596 A/duck/Eastern China/L1120/2012 (A/H5N8) segment 4 (HA) 2843.1 0.000000e+00 1649/1704 (96%) EPI703591 A/duck/Eastern China/L0405/2010 (A/H5N8) segment 4 (HA) 2843.1 0.000000e+00 1649/1704 (96%) EPI703598 A/goose/Eastern China/L1204/2012 (A/H5N8) segment 4 (HA) 2837.6 0.000000e+00 1648/1704 (96%) EPI703590 A/duck/Eastern China/L0230/2010 (A/H5N2) segment 4 (HA) 2832.0 0.000000e+00 1647/1704 (96%) EPI703589 A/duck/Eastern China/L0321/2010 (A/H5N2) segment 4 (HA) 2832.0 0.000000e+00 1647/1704 (96%) EPI431456 A/duck/Hebei/3/2011 (A/H5N2) segment 4 (HA) 2832.0 0.000000e+00 1647/1704 (96%) EPI398966 A/goose/Eastern China/1112/2011 (A/H5N2) segment 4 (HA) 2821.0 0.000000e+00 1645/1704 (96%) EPI399960 A/duck/Jiangsu/m234/2012 (A/H5N2) segment 4 (HA) 2817.3 0.000000e+00 1637/1693 (96%) EPI398965 A/duck/Eastern China/1111/2011 (A/H5N2) segment 4 (HA) 2815.4 0.000000e+00 1644/1704 (96%) EPI672795 A/duck/Guangdong/s14044/2014 (A/H5N8) segment 4 (HA) 2804.3 0.000000e+00 1642/1704 (96%) EPI672787 A/goose/Guangdong/s13124/2013 (A/H5N8) segment 4 (HA) 2804.3 0.000000e+00 1642/1704 (96%) EPI682917 A/duck/Taizhou/TZYG12/2015 (A/H5N6) segment 4 (HA) 2793.3 0.000000e+00 1640/1704 (96%) EPI544892 A/duck/Shandong/Q1/2013 (A/H5N8) segment 4 (HA) 2793.3 0.000000e+00 1640/1704 (96%) EPI703597 A/goose/Eastern China/L1214/2012 (A/H5N8) segment 4 (HA) 2787.7 0.000000e+00 1639/1704 (96%) EPI493825 A/duck/Guangdong/wy19/2008 (A/H5N5) segment 4 (HA) 2782.2 0.000000e+00 1639/1705 (96%) EPI493817 A/duck/Guangdong/wy11/2008 (A/H5N5) segment 4 (HA) 2760.0 0.000000e+00 1637/1707 (95%) EPI431448 A/duck/Hebei/2/2011 (A/H5N2) segment 4 (HA) 2756.3 0.000000e+00 1633/1704 (95%) EPI687531 A/Enviroment/Guangdong/SS127/2013(H5N6) (A/H5N6) segment 4 (HA) 2743.4 0.000000e+00 1632/1705 (95%) EPI499478 A/chicken/China/AH/2012 (A/H5N1) segment 4 (HA) 2737.9 0.000000e+00 1630/1704 (95%) EPI676397 A/environment/GZ/75/2014 (A/H5N6) segment 4 (HA) 2732.3 0.000000e+00 1630/1705 (95%) EPI681296 A/chicken/Zhejiang/727155/2014 (A/H5N6) segment 4 (HA) 2726.8 0.000000e+00 1629/1705 (95%) EPI602419 A/chicken/Dongguan/3363/2013 (A/H5N6) segment 4 (HA) 2726.8 0.000000e+00 1629/1705 (95%) EPI602028 A/chicken/Dongguan/4190/2013 (A/H0) segment 4 (HA) 2723.1 0.000000e+00 1628/1705 (95%) EPI703600 A/goose/Eastern China/S0513/2013 (A/H5N6) segment 4 (HA) 2721.2 0.000000e+00 1628/1705 (95%) EPI681295 A/chicken/Zhejiang/727026/2014 (A/H5N6) segment 4 (HA) 2721.2 0.000000e+00 1628/1705 (95%) EPI681294 A/chicken/Zhejiang/727022/2014 (A/H5N6) segment 4 (HA) 2721.2 0.000000e+00 1628/1705 (95%) EPI681284 A/chicken/Zhejiang/727159/2014 (A/H5N2) segment 4 (HA) 2721.2 0.000000e+00 1628/1705 (95%) EPI681283 A/chicken/Zhejiang/727079/2014 (A/H5N2) segment 4 (HA) 2721.2 0.000000e+00 1628/1705 (95%) EPI599339 A/duck/Dongguan/3069/2013 (A/H5N6) segment 4 (HA) 2721.2 0.000000e+00 1628/1705 (95%) EPI599299 A/chicken/Shenzhen/1395/2013 (A/H5N6) segment 4 (HA) 2721.2 0.000000e+00 1628/1705 (95%) EPI328878 A/duck/Eastern China/031/2009 (A/H5N5) segment 4 (HA) 2721.2 0.000000e+00 1629/1706 (95%) EPI687498 A/Goose/ Guangdong /JG125/2013(H5N6) (A/H5N6) segment 4 (HA) 2715.7 0.000000e+00 1627/1705 (95%) EPI681287 A/goose/Zhejiang/727110/2014 (A/H5N6) segment 4 (HA) 2715.7 0.000000e+00 1627/1705 (95%) EPI681286 A/goose/Zhejiang/727092/2014 (A/H5N6) segment 4 (HA) 2715.7 0.000000e+00 1627/1705 (95%) EPI602484 A/chicken/Shenzhen/1061/2013 (A/H5N6) segment 4 (HA) 2715.7 0.000000e+00 1628/1706 (95%) EPI602412 A/chicken/Dongguan/2690/2013 (A/H5N6) segment 4 (HA) 2715.7 0.000000e+00 1627/1705 (95%) EPI602045 A/chicken/Dongguan/2818/2013 (A/H0) segment 4 (HA) 2715.7 0.000000e+00 1627/1705 (95%) EPI599333 A/silkie chicken/Dongguan/2809/2013 (A/H5N6) segment 4 (HA) 2715.7 0.000000e+00 1627/1705 (95%) EPI599327 A/duck/Dongguan/2685/2013 (A/H5N6) segment 4 (HA) 2715.7 0.000000e+00 1627/1705 (95%) EPI531456 A/duck/Guangdong/GD01/2014 (A/H5N6) segment 4 (HA) 2715.7 0.000000e+00 1627/1705 (95%) EPI736914 A/Changsha/1/2014 (A/H5N6) segment 4 (HA) 2712.0 0.000000e+00 1627/1705 (95%) EPI681285 A/duck/Zhejiang/727158/2014 (A/H5N6) segment 4 (HA) 2710.2 0.000000e+00 1627/1706 (95%) EPI602477 A/chicken/Shenzhen/715/2013 (A/H5N6) segment 4 (HA) 2710.2 0.000000e+00 1626/1705 (95%) EPI602094 A/chicken/Shenzhen/712/2013 (A/H0) segment 4 (HA) 2710.2 0.000000e+00 1625/1704 (95%) EPI599662 A/goose/Shantou/1806/2014 (A/H5N6) segment 4 (HA) 2710.2 0.000000e+00 1627/1706 (95%) EPI599655 A/goose/Shantou/1791/2014 (A/H5N6) segment 4 (HA) 2710.2 0.000000e+00 1627/1706 (95%) EPI599648 A/goose/Shantou/1763/2014 (A/H5N6) segment 4 (HA) 2710.2 0.000000e+00 1627/1706 (95%) EPI599285 A/chicken/Shenzhen/433/2013 (A/H5N6) segment 4 (HA) 2710.2 0.000000e+00 1626/1705 (95%) EPI530054 A/duck/Jiangxi/95/2014 (A/H5N6) segment 4 (HA) 2710.2 0.000000e+00 1626/1705 (95%) EPI645049 A/swine/Guangdong/1/2014 (A/H5N6) segment 4 (HA) 2708.3 0.000000e+00 1626/1705 (95%) EPI775291 A/duck/Guangzhou/021/2014 (A/H5N6) segment 4 (HA) 2704.6 0.000000e+00 1625/1705 (95%) EPI775283 A/duck/Guangzhou/018/2014 (A/H5N6) segment 4 (HA) 2704.6 0.000000e+00 1625/1705 (95%) EPI687547 A/Goose/ Guangdong /SSZYP/2015(H5N6) (A/H5N6) segment 4 (HA) 2704.6 0.000000e+00 1625/1705 (95%) EPI602103 A/chicken/Shenzhen/2072/2013 (A/H0) segment 4 (HA) 2704.6 0.000000e+00 1625/1705 (95%) EPI599346 A/chicken/Dongguan/4259/2013 (A/H5N6) segment 4 (HA) 2704.6 0.000000e+00 1625/1705 (95%) Link to comment Share on other sites More sharing options...
niman Posted November 24, 2016 Author Report Share Posted November 24, 2016 Align Segment-ID Name Score E-Value Identity EPI861573 A/mute swan/Croatia/78/2016 (A/H5N8) segment 6 (NA) 2597.5 0.000000e+00 1406/1406 (100%) EPI861569 A/mute swan/Croatia/70/2016 (A/H5N8) segment 6 (NA) 2575.3 0.000000e+00 1402/1406 (99%) EPI860232 A/wild duck/Poland/82A/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI859649 A/wild duck/Germany-BW/R8455/2016 (A/H5N8) segment 6 (NA) 2544.0 0.000000e+00 1396/1406 (99%) EPI836616 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI836608 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI823758 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI823750 A/wild duck/Tyva/35/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI823462 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI773759 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 6 (NA) 2536.6 0.000000e+00 1395/1406 (99%) EPI859213 A/tufted_duck/Germany-SH/R8446/2016 (A/H5N8) segment 6 (NA) 2531.0 0.000000e+00 1394/1406 (99%) EPI703648 A/duck/Eastern China/S1109/2014 (A/H5N8) segment 6 (NA) 2497.8 0.000000e+00 1388/1406 (98%) EPI703642 A/duck/Eastern China/S0215/2014 (A/H5N8) segment 6 (NA) 2464.6 0.000000e+00 1382/1406 (98%) EPI681357 A/goose/Zhejiang/925037/2014 (A/H5N8) segment 6 (NA) 2453.5 0.000000e+00 1380/1406 (98%) EPI681358 A/goose/Zhejiang/925104/2014 (A/H5N8) segment 6 (NA) 2431.3 0.000000e+00 1376/1406 (97%) EPI583873 A/duck/Shaoxing/5240/2013 (A/H0) segment 6 (NA) 2420.2 0.000000e+00 1374/1406 (97%) EPI591884 A/duck/Jiangxi/23970/2013 (A/H0) segment 6 (NA) 2414.7 0.000000e+00 1373/1406 (97%) EPI530989 A/duck/Zhejiang/W24/2013 (A/H5N8) segment 6 (NA) 2414.7 0.000000e+00 1374/1407 (97%) EPI690794 A/goose/Jiangsu/QD5/2014 (A/H5N8) segment 6 (NA) 2409.2 0.000000e+00 1372/1406 (97%) EPI561493 A/Baikal teal/Korea/H52/2014 (A/H5N8) segment 6 (NA) 2409.2 0.000000e+00 1372/1406 (97%) EPI530990 A/duck/Zhejiang/6D18/2013 (A/H5N8) segment 6 (NA) 2409.2 0.000000e+00 1373/1407 (97%) EPI509700 A/breeder duck/Korea/Gochang1/2014 (A/H5N8) segment 6 (NA) 2409.2 0.000000e+00 1372/1406 (97%) EPI762160 A/goose/Eastern China/CZ/2013 (A/H5N8) segment 6 (NA) 2403.6 0.000000e+00 1371/1406 (97%) EPI703638 A/duck/Eastern China/S1210/2013 (A/H5N8) segment 6 (NA) 2403.6 0.000000e+00 1371/1406 (97%) EPI681355 A/duck/Zhejiang/925019/2014 (A/H5N8) segment 6 (NA) 2398.1 0.000000e+00 1370/1406 (97%) EPI703635 A/duck/Eastern China/L1021/2012 (A/H5N8) segment 6 (NA) 2392.5 0.000000e+00 1369/1406 (97%) EPI690802 A/goose/Shandong/WFSG1/2014 (A/H5N8) segment 6 (NA) 2392.5 0.000000e+00 1369/1406 (97%) EPI681356 A/duck/Zhejiang/925169/2014 (A/H5N8) segment 6 (NA) 2392.5 0.000000e+00 1370/1407 (97%) EPI646030 A/goose/Jiangsu/WX202/2014 (A/H5N8) segment 6 (NA) 2387.0 0.000000e+00 1368/1406 (97%) EPI507675 A/mallard duck/Shanghai/SH-9/2013 (A/H5N8) segment 6 (NA) 2387.0 0.000000e+00 1369/1407 (97%) EPI602039 A/duck/Ningbo/3262/2013 (A/H0) segment 6 (NA) 2385.1 0.000000e+00 1349/1378 (97%) EPI762152 A/duck/Eastern China/JY/2014 (A/H5N8) segment 6 (NA) 2381.5 0.000000e+00 1367/1406 (97%) EPI703634 A/duck/Eastern China/L0722/2012 (A/H5N8) segment 6 (NA) 2381.5 0.000000e+00 1367/1406 (97%) EPI703633 A/duck/Eastern China/L0611/2011 (A/H5N8) segment 6 (NA) 2375.9 0.000000e+00 1367/1407 (97%) EPI703631 A/duck/Eastern China/L0405/2010 (A/H5N8) segment 6 (NA) 2375.9 0.000000e+00 1366/1406 (97%) EPI690810 A/goose/Yangzhou/0420/2014 (A/H5N8) segment 6 (NA) 2375.9 0.000000e+00 1366/1406 (97%) EPI703647 A/goose/Eastern China/S0408/2014 (A/H5N8) segment 6 (NA) 2370.4 0.000000e+00 1365/1406 (97%) EPI703632 A/duck/Eastern China/L0423/2011 (A/H5N8) segment 6 (NA) 2348.2 0.000000e+00 1356/1398 (96%) EPI442019 A/duck/Jiangsu/k1203/2010 (A/H5N8) segment 6 (NA) 2331.6 0.000000e+00 1351/1395 (96%) EPI544894 A/duck/Shandong/Q1/2013 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1358/1407 (96%) EPI561600 A/broiler duck/Korea/H133/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1356/1406 (96%) EPI718279 A/ostrich/Korea/H829/2014 (A/H5N8) segment 6 (NA) 2315.0 0.000000e+00 1355/1406 (96%) EPI703639 A/goose/Eastern China/L1204/2012 (A/H5N8) segment 6 (NA) 2315.0 0.000000e+00 1355/1406 (96%) EPI703637 A/goose/Eastern China/L1214/2012 (A/H5N8) segment 6 (NA) 2315.0 0.000000e+00 1355/1406 (96%) EPI703636 A/duck/Eastern China/L1120/2012 (A/H5N8) segment 6 (NA) 2315.0 0.000000e+00 1355/1406 (96%) EPI585633 A/baikal teal/Korea/2417/2014 (A/H5N8) segment 6 (NA) 2315.0 0.000000e+00 1355/1406 (96%) EPI585632 A/baikal teal/Korea/2416/2014 (A/H5N8) segment 6 (NA) 2315.0 0.000000e+00 1355/1406 (96%) EPI585630 A/baikal teal/Korea/2406/2014 (A/H5N8) segment 6 (NA) 2315.0 0.000000e+00 1355/1406 (96%) EPI585629 A/baikal teal/Korea/2403/2014 (A/H5N8) segment 6 (NA) 2315.0 0.000000e+00 1355/1406 (96%) EPI585628 A/baikal teal/Korea/2402/2014 (A/H5N8) segment 6 (NA) 2315.0 0.000000e+00 1355/1406 (96%) EPI585626 A/baikal teal/Korea/1458/2014 (A/H5N8) segment 6 (NA) 2315.0 0.000000e+00 1355/1406 (96%) EPI585624 A/baikal teal/Korea/1456/2014 (A/H5N8) segment 6 (NA) 2315.0 0.000000e+00 1355/1406 (96%) EPI585623 A/baikal teal/Korea/1454/2014 (A/H5N8) segment 6 (NA) 2315.0 0.000000e+00 1355/1406 (96%) EPI585620 A/baikal teal/Korea/1448/2014 (A/H5N8) segment 6 (NA) 2315.0 0.000000e+00 1355/1406 (96%) EPI585619 A/baikal teal/Korea/1447/2014 (A/H5N8) segment 6 (NA) 2315.0 0.000000e+00 1355/1406 (96%) EPI585617 A/baikal teal/Korea/1445/2014 (A/H5N8) segment 6 (NA) 2315.0 0.000000e+00 1355/1406 (96%) EPI585616 A/baikal teal/Korea/1441/2014 (A/H5N8) segment 6 (NA) 2315.0 0.000000e+00 1355/1406 (96%) EPI561692 A/common teal/Korea/H455-30/2014 (A/H5N8) segment 6 (NA) 2315.0 0.000000e+00 1355/1406 (96%) EPI561676 A/bean goose/Korea/H328/2014 (A/H5N8) segment 6 (NA) 2315.0 0.000000e+00 1355/1406 (96%) EPI561662 A/Korean native chicken/Korea/H257/2014 (A/H5N8) segment 6 (NA) 2315.0 0.000000e+00 1355/1406 (96%) EPI561655 A/breeder chicken/Korea/H250/2014 (A/H5N8) segment 6 (NA) 2315.0 0.000000e+00 1355/1406 (96%) EPI561648 A/breeder duck/Korea/H249/2014 (A/H5N8) segment 6 (NA) 2315.0 0.000000e+00 1355/1406 (96%) EPI561635 A/white-fronted goose/Korea/H231/2014 (A/H5N8) segment 6 (NA) 2315.0 0.000000e+00 1355/1406 (96%) EPI561628 A/mallard/Korea/H207/2014 (A/H5N8) segment 6 (NA) 2315.0 0.000000e+00 1355/1406 (96%) EPI561621 A/breeder duck/Korea/H200/2014 (A/H5N8) segment 6 (NA) 2315.0 0.000000e+00 1355/1406 (96%) EPI561614 A/breeder duck/Korea/H158/2014 (A/H5N8) segment 6 (NA) 2315.0 0.000000e+00 1355/1406 (96%) EPI561579 A/breeder chicken/Korea/H122/2014 (A/H5N8) segment 6 (NA) 2315.0 0.000000e+00 1355/1406 (96%) EPI561510 A/bean goose/Korea/H53/2014 (A/H5N8) segment 6 (NA) 2315.0 0.000000e+00 1355/1406 (96%) EPI561362 A/broiler duck/Korea/H49/2014 (A/H5N8) segment 6 (NA) 2315.0 0.000000e+00 1355/1406 (96%) EPI561355 A/broiler duck/Korea/H48/2014 (A/H5N8) segment 6 (NA) 2315.0 0.000000e+00 1355/1406 (96%) EPI561350 A/broiler duck/Korea/H47/2014 (A/H5N8) segment 6 (NA) 2315.0 0.000000e+00 1355/1406 (96%) EPI561343 A/Baikal teal/Korea/H41/2014 (A/H5N8) segment 6 (NA) 2315.0 0.000000e+00 1355/1406 (96%) EPI561209 A/broiler duck/Korea/H31/2014 (A/H5N8) segment 6 (NA) 2315.0 0.000000e+00 1355/1406 (96%) EPI561198 A/broiler duck/Korea/H29/2014 (A/H5N8) segment 6 (NA) 2315.0 0.000000e+00 1355/1406 (96%) EPI509714 A/baikal teal/Korea/Donglim3/2014 (A/H5N8) segment 6 (NA) 2315.0 0.000000e+00 1355/1406 (96%) EPI509706 A/broiler duck/Korea/Buan2/2014 (A/H5N8) segment 6 (NA) 2315.0 0.000000e+00 1355/1406 (96%) EPI585627 A/baikal teal/Korea/2399/2014 (A/H5N8) segment 6 (NA) 2309.4 0.000000e+00 1354/1406 (96%) EPI585625 A/baikal teal/Korea/1457/2014 (A/H5N8) segment 6 (NA) 2309.4 0.000000e+00 1354/1406 (96%) EPI585622 A/baikal teal/Korea/1452/2014 (A/H5N8) segment 6 (NA) 2309.4 0.000000e+00 1354/1406 (96%) EPI561707 A/bean goose/Korea/H40/2014 (A/H5N8) segment 6 (NA) 2309.4 0.000000e+00 1354/1406 (96%) EPI561699 A/spot-billed duck/Korea/H455-42/2014 (A/H5N8) segment 6 (NA) 2309.4 0.000000e+00 1354/1406 (96%) EPI561683 A/tundra swan/Korea/H411/2014 (A/H5N8) segment 6 (NA) 2309.4 0.000000e+00 1354/1406 (96%) EPI561669 A/mallard/Korea/H297/2014 (A/H5N8) segment 6 (NA) 2309.4 0.000000e+00 1354/1406 (96%) EPI561607 A/broiler duck/Korea/H145/2014 (A/H5N8) segment 6 (NA) 2309.4 0.000000e+00 1354/1406 (96%) EPI561593 A/breeder duck/Korea/H128/2014 (A/H5N8) segment 6 (NA) 2309.4 0.000000e+00 1354/1406 (96%) EPI561572 A/Baikal teal/Korea/H96/2014 (A/H5N8) segment 6 (NA) 2309.4 0.000000e+00 1354/1406 (96%) EPI561565 A/Baikal teal/Korea/H84/2014 (A/H5N8) segment 6 (NA) 2309.4 0.000000e+00 1354/1406 (96%) EPI561558 A/Coot/Korea/H81/2014 (A/H5N8) segment 6 (NA) 2309.4 0.000000e+00 1355/1407 (96%) EPI561551 A/Baikal teal/Korea/H80/2014 (A/H5N8) segment 6 (NA) 2309.4 0.000000e+00 1355/1407 (96%) EPI561544 A/Baikal teal/Korea/H68/2014 (A/H5N8) segment 6 (NA) 2309.4 0.000000e+00 1354/1406 (96%) EPI561531 A/Baikal teal/Korea/H66/2014 (A/H5N8) segment 6 (NA) 2309.4 0.000000e+00 1354/1406 (96%) EPI561524 A/broiler duck/Korea/H65/2014 (A/H5N8) segment 6 (NA) 2309.4 0.000000e+00 1354/1406 (96%) EPI561517 A/Baikal teal/Korea/H62/2014 (A/H5N8) segment 6 (NA) 2309.4 0.000000e+00 1354/1406 (96%) EPI552748 A/turkey/Germany/AR2485-86-L00899/2014 (A/H5N8) segment 6 (NA) 2309.4 0.000000e+00 1354/1406 (96%) EPI548495 A/duck/Chiba/26-372-61/2014 (A/H5N8) segment 6 (NA) 2309.4 0.000000e+00 1355/1407 (96%) EPI548487 A/duck/Chiba/26-372-48/2014 (A/H5N8) segment 6 (NA) 2309.4 0.000000e+00 1355/1407 (96%) EPI544759 A/turkey/Germany-MV/R2472/2014 (A/H5N8) segment 6 (NA) 2309.4 0.000000e+00 1354/1406 (96%) EPI624533 A/scarlet_ibis/Germany/AR44-L01279/2015 (A/H5N8) segment 6 (NA) 2303.9 0.000000e+00 1353/1406 (96%) EPI585631 A/baikal teal/Korea/2414/2014 (A/H5N8) segment 6 (NA) 2303.9 0.000000e+00 1353/1406 (96%) EPI585621 A/baikal teal/Korea/1449/2014 (A/H5N8) segment 6 (NA) 2303.9 0.000000e+00 1353/1406 (96%) Link to comment Share on other sites More sharing options...
niman Posted November 30, 2016 Author Report Share Posted November 30, 2016 Descriptions Align Segment-ID Name Score E-Value Identity EPI861568 A/mute swan/Croatia/70/2016 (A/H5N8) segment 4 (HA) 3147.8 0.000000e+00 1704/1704 (100%) EPI861572 A/mute swan/Croatia/78/2016 (A/H5N8) segment 4 (HA) 3142.3 0.000000e+00 1703/1704 (99%) EPI859212 A/tufted_duck/Germany-SH/R8446/2016 (A/H5N8) segment 4 (HA) 3098.0 0.000000e+00 1695/1704 (99%) EPI836614 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 4 (HA) 3098.0 0.000000e+00 1695/1704 (99%) EPI836606 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 4 (HA) 3098.0 0.000000e+00 1695/1704 (99%) EPI823756 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 4 (HA) 3098.0 0.000000e+00 1695/1704 (99%) EPI823748 A/wild duck/Tyva/35/2016 (A/H5N8) segment 4 (HA) 3098.0 0.000000e+00 1695/1704 (99%) EPI823460 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 4 (HA) 3098.0 0.000000e+00 1695/1704 (99%) EPI773757 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 4 (HA) 3098.0 0.000000e+00 1696/1705 (99%) EPI859650 A/wild duck/Germany-BW/R8455/2016 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI863865 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI860231 A/wild duck/Poland/82A/2016 (A/H5N8) segment 4 (HA) 3072.1 0.000000e+00 1690/1704 (99%) EPI863857 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI863849 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI863834 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI863826 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI703608 A/duck/Eastern China/S1109/2014 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI681300 A/goose/Zhejiang/925104/2014 (A/H5N8) segment 4 (HA) 2992.7 0.000000e+00 1676/1704 (98%) EPI681299 A/goose/Zhejiang/925037/2014 (A/H5N8) segment 4 (HA) 2992.7 0.000000e+00 1676/1704 (98%) EPI703602 A/duck/Eastern China/S0215/2014 (A/H5N8) segment 4 (HA) 2981.6 0.000000e+00 1674/1704 (98%) EPI681290 A/goose/Zhejiang/925106/2014 (A/H5N6) segment 4 (HA) 2970.5 0.000000e+00 1672/1704 (98%) EPI509698 A/breeder duck/Korea/Gochang1/2014 (A/H5N8) segment 4 (HA) 2959.5 0.000000e+00 1670/1704 (98%) EPI561495 A/Baikal teal/Korea/H52/2014 (A/H5N8) segment 4 (HA) 2948.4 0.000000e+00 1668/1704 (97%) EPI591879 A/duck/Jiangxi/23970/2013 (A/H0) segment 4 (HA) 2942.8 0.000000e+00 1667/1704 (97%) EPI703599 A/duck/Eastern China/S1210/2013 (A/H5N8) segment 4 (HA) 2937.3 0.000000e+00 1666/1704 (97%) EPI690792 A/goose/Jiangsu/QD5/2014 (A/H5N8) segment 4 (HA) 2937.3 0.000000e+00 1666/1704 (97%) EPI762158 A/goose/Eastern China/CZ/2013 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1665/1704 (97%) EPI703607 A/goose/Eastern China/S0408/2014 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1665/1704 (97%) EPI690808 A/goose/Yangzhou/0420/2014 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1666/1705 (97%) EPI690800 A/goose/Shandong/WFSG1/2014 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1665/1704 (97%) EPI602037 A/duck/Ningbo/3262/2013 (A/H0) segment 4 (HA) 2926.2 0.000000e+00 1664/1704 (97%) EPI583870 A/duck/Shaoxing/5240/2013 (A/H0) segment 4 (HA) 2926.2 0.000000e+00 1664/1704 (97%) EPI530985 A/duck/Zhejiang/W24/2013 (A/H5N8) segment 4 (HA) 2926.2 0.000000e+00 1664/1704 (97%) EPI762150 A/duck/Eastern China/JY/2014 (A/H5N8) segment 4 (HA) 2920.7 0.000000e+00 1664/1705 (97%) EPI530986 A/duck/Zhejiang/6D18/2013 (A/H5N8) segment 4 (HA) 2920.7 0.000000e+00 1663/1704 (97%) EPI507673 A/mallard duck/Shanghai/SH-9/2013 (A/H5N8) segment 4 (HA) 2920.7 0.000000e+00 1663/1704 (97%) EPI860239 A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 4 (HA) 2917.0 0.000000e+00 1599/1609 (99%) EPI703595 A/duck/Eastern China/L1021/2012 (A/H5N8) segment 4 (HA) 2915.1 0.000000e+00 1662/1704 (97%) EPI681280 A/goose/Zhejiang/77166/2014 (A/H5N2) segment 4 (HA) 2911.4 0.000000e+00 1660/1702 (97%) EPI646105 A/goose/Jiangsu/WX202/2014 (A/H5N8) segment 4 (HA) 2904.1 0.000000e+00 1660/1704 (97%) EPI681298 A/duck/Zhejiang/925169/2014 (A/H5N8) segment 4 (HA) 2898.5 0.000000e+00 1660/1705 (97%) EPI703593 A/duck/Eastern China/L0611/2011 (A/H5N8) segment 4 (HA) 2893.0 0.000000e+00 1658/1704 (97%) EPI682915 A/duck/Wenzhou/YHQL22/2014 (A/H5N6) segment 4 (HA) 2893.0 0.000000e+00 1658/1704 (97%) EPI703592 A/duck/Eastern China/L0423/2011 (A/H5N8) segment 4 (HA) 2887.4 0.000000e+00 1657/1704 (97%) EPI681297 A/duck/Zhejiang/925019/2014 (A/H5N8) segment 4 (HA) 2887.4 0.000000e+00 1658/1705 (97%) EPI593747 A/goose/Shandong/k1201/2009 (A/H5N1) segment 4 (HA) 2881.9 0.000000e+00 1656/1704 (97%) EPI442017 A/duck/Jiangsu/k1203/2010 (A/H5N8) segment 4 (HA) 2881.9 0.000000e+00 1656/1704 (97%) EPI703594 A/duck/Eastern China/L0722/2012 (A/H5N8) segment 4 (HA) 2870.8 0.000000e+00 1654/1704 (97%) EPI643147 A/Environment/Guangdong/GZ55/2013(H5N8) (A/H5N8) segment 4 (HA) 2865.3 0.000000e+00 1651/1707 (96%) EPI475579 A/wild duck/Shandong/628/2011 (A/H5N1) segment 4 (HA) 2854.2 0.000000e+00 1651/1704 (96%) EPI703596 A/duck/Eastern China/L1120/2012 (A/H5N8) segment 4 (HA) 2848.7 0.000000e+00 1650/1704 (96%) EPI703591 A/duck/Eastern China/L0405/2010 (A/H5N8) segment 4 (HA) 2848.7 0.000000e+00 1650/1704 (96%) EPI703598 A/goose/Eastern China/L1204/2012 (A/H5N8) segment 4 (HA) 2843.1 0.000000e+00 1649/1704 (96%) EPI703590 A/duck/Eastern China/L0230/2010 (A/H5N2) segment 4 (HA) 2837.6 0.000000e+00 1648/1704 (96%) EPI703589 A/duck/Eastern China/L0321/2010 (A/H5N2) segment 4 (HA) 2837.6 0.000000e+00 1648/1704 (96%) EPI431456 A/duck/Hebei/3/2011 (A/H5N2) segment 4 (HA) 2837.6 0.000000e+00 1648/1704 (96%) EPI398966 A/goose/Eastern China/1112/2011 (A/H5N2) segment 4 (HA) 2826.5 0.000000e+00 1646/1704 (96%) EPI399960 A/duck/Jiangsu/m234/2012 (A/H5N2) segment 4 (HA) 2822.8 0.000000e+00 1638/1693 (96%) EPI398965 A/duck/Eastern China/1111/2011 (A/H5N2) segment 4 (HA) 2821.0 0.000000e+00 1645/1704 (96%) EPI672795 A/duck/Guangdong/s14044/2014 (A/H5N8) segment 4 (HA) 2809.9 0.000000e+00 1643/1704 (96%) EPI672787 A/goose/Guangdong/s13124/2013 (A/H5N8) segment 4 (HA) 2809.9 0.000000e+00 1643/1704 (96%) EPI682917 A/duck/Taizhou/TZYG12/2015 (A/H5N6) segment 4 (HA) 2798.8 0.000000e+00 1641/1704 (96%) EPI544892 A/duck/Shandong/Q1/2013 (A/H5N8) segment 4 (HA) 2798.8 0.000000e+00 1641/1704 (96%) EPI703597 A/goose/Eastern China/L1214/2012 (A/H5N8) segment 4 (HA) 2793.3 0.000000e+00 1640/1704 (96%) EPI493825 A/duck/Guangdong/wy19/2008 (A/H5N5) segment 4 (HA) 2787.7 0.000000e+00 1640/1705 (96%) EPI493817 A/duck/Guangdong/wy11/2008 (A/H5N5) segment 4 (HA) 2765.6 0.000000e+00 1638/1707 (95%) EPI431448 A/duck/Hebei/2/2011 (A/H5N2) segment 4 (HA) 2761.9 0.000000e+00 1634/1704 (95%) EPI687531 A/Enviroment/Guangdong/SS127/2013(H5N6) (A/H5N6) segment 4 (HA) 2748.9 0.000000e+00 1633/1705 (95%) EPI499478 A/chicken/China/AH/2012 (A/H5N1) segment 4 (HA) 2743.4 0.000000e+00 1631/1704 (95%) EPI676397 A/environment/GZ/75/2014 (A/H5N6) segment 4 (HA) 2737.9 0.000000e+00 1631/1705 (95%) EPI681296 A/chicken/Zhejiang/727155/2014 (A/H5N6) segment 4 (HA) 2732.3 0.000000e+00 1630/1705 (95%) EPI602419 A/chicken/Dongguan/3363/2013 (A/H5N6) segment 4 (HA) 2732.3 0.000000e+00 1630/1705 (95%) EPI602028 A/chicken/Dongguan/4190/2013 (A/H0) segment 4 (HA) 2728.6 0.000000e+00 1629/1705 (95%) EPI703600 A/goose/Eastern China/S0513/2013 (A/H5N6) segment 4 (HA) 2726.8 0.000000e+00 1629/1705 (95%) EPI681295 A/chicken/Zhejiang/727026/2014 (A/H5N6) segment 4 (HA) 2726.8 0.000000e+00 1629/1705 (95%) EPI681294 A/chicken/Zhejiang/727022/2014 (A/H5N6) segment 4 (HA) 2726.8 0.000000e+00 1629/1705 (95%) EPI681284 A/chicken/Zhejiang/727159/2014 (A/H5N2) segment 4 (HA) 2726.8 0.000000e+00 1629/1705 (95%) EPI681283 A/chicken/Zhejiang/727079/2014 (A/H5N2) segment 4 (HA) 2726.8 0.000000e+00 1629/1705 (95%) EPI599339 A/duck/Dongguan/3069/2013 (A/H5N6) segment 4 (HA) 2726.8 0.000000e+00 1629/1705 (95%) EPI599299 A/chicken/Shenzhen/1395/2013 (A/H5N6) segment 4 (HA) 2726.8 0.000000e+00 1629/1705 (95%) EPI328878 A/duck/Eastern China/031/2009 (A/H5N5) segment 4 (HA) 2726.8 0.000000e+00 1630/1706 (95%) EPI687498 A/Goose/ Guangdong /JG125/2013(H5N6) (A/H5N6) segment 4 (HA) 2721.2 0.000000e+00 1628/1705 (95%) EPI681287 A/goose/Zhejiang/727110/2014 (A/H5N6) segment 4 (HA) 2721.2 0.000000e+00 1628/1705 (95%) EPI681286 A/goose/Zhejiang/727092/2014 (A/H5N6) segment 4 (HA) 2721.2 0.000000e+00 1628/1705 (95%) EPI602484 A/chicken/Shenzhen/1061/2013 (A/H5N6) segment 4 (HA) 2721.2 0.000000e+00 1629/1706 (95%) EPI602412 A/chicken/Dongguan/2690/2013 (A/H5N6) segment 4 (HA) 2721.2 0.000000e+00 1628/1705 (95%) EPI602045 A/chicken/Dongguan/2818/2013 (A/H0) segment 4 (HA) 2721.2 0.000000e+00 1628/1705 (95%) EPI599333 A/silkie chicken/Dongguan/2809/2013 (A/H5N6) segment 4 (HA) 2721.2 0.000000e+00 1628/1705 (95%) EPI599327 A/duck/Dongguan/2685/2013 (A/H5N6) segment 4 (HA) 2721.2 0.000000e+00 1628/1705 (95%) EPI531456 A/duck/Guangdong/GD01/2014 (A/H5N6) segment 4 (HA) 2721.2 0.000000e+00 1628/1705 (95%) EPI736914 A/Changsha/1/2014 (A/H5N6) segment 4 (HA) 2717.5 0.000000e+00 1628/1705 (95%) EPI681285 A/duck/Zhejiang/727158/2014 (A/H5N6) segment 4 (HA) 2715.7 0.000000e+00 1628/1706 (95%) EPI602477 A/chicken/Shenzhen/715/2013 (A/H5N6) segment 4 (HA) 2715.7 0.000000e+00 1627/1705 (95%) EPI602094 A/chicken/Shenzhen/712/2013 (A/H0) segment 4 (HA) 2715.7 0.000000e+00 1626/1704 (95%) EPI599662 A/goose/Shantou/1806/2014 (A/H5N6) segment 4 (HA) 2715.7 0.000000e+00 1628/1706 (95%) EPI599655 A/goose/Shantou/1791/2014 (A/H5N6) segment 4 (HA) 2715.7 0.000000e+00 1628/1706 (95%) EPI599648 A/goose/Shantou/1763/2014 (A/H5N6) segment 4 (HA) 2715.7 0.000000e+00 1628/1706 (95%) EPI599285 A/chicken/Shenzhen/433/2013 (A/H5N6) segment 4 (HA) 2715.7 0.000000e+00 1627/1705 (95%) EPI530054 A/duck/Jiangxi/95/2014 (A/H5N6) segment 4 (HA) 2715.7 0.000000e+00 1627/1705 (95%) EPI645049 A/swine/Guangdong/1/2014 (A/H5N6) segment 4 (HA) 2713.8 0.000000e+00 1627/1705 (95%) Link to comment Share on other sites More sharing options...
niman Posted November 30, 2016 Author Report Share Posted November 30, 2016 Descriptions Align Segment-ID Name Score E-Value Identity EPI861569 A/mute swan/Croatia/70/2016 (A/H5N8) segment 6 (NA) 2597.5 0.000000e+00 1406/1406 (100%) EPI861573 A/mute swan/Croatia/78/2016 (A/H5N8) segment 6 (NA) 2575.3 0.000000e+00 1402/1406 (99%) EPI860232 A/wild duck/Poland/82A/2016 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1399/1406 (99%) EPI859649 A/wild duck/Germany-BW/R8455/2016 (A/H5N8) segment 6 (NA) 2555.0 0.000000e+00 1398/1406 (99%) EPI863867 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI863851 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI863836 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI863828 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI836616 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI836608 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI823758 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI823750 A/wild duck/Tyva/35/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI823462 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI863859 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 6 (NA) 2549.5 0.000000e+00 1397/1406 (99%) EPI773759 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI859213 A/tufted_duck/Germany-SH/R8446/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI703648 A/duck/Eastern China/S1109/2014 (A/H5N8) segment 6 (NA) 2508.9 0.000000e+00 1390/1406 (98%) EPI703642 A/duck/Eastern China/S0215/2014 (A/H5N8) segment 6 (NA) 2475.6 0.000000e+00 1384/1406 (98%) EPI681357 A/goose/Zhejiang/925037/2014 (A/H5N8) segment 6 (NA) 2464.6 0.000000e+00 1382/1406 (98%) EPI681358 A/goose/Zhejiang/925104/2014 (A/H5N8) segment 6 (NA) 2442.4 0.000000e+00 1378/1406 (98%) EPI583873 A/duck/Shaoxing/5240/2013 (A/H0) segment 6 (NA) 2431.3 0.000000e+00 1376/1406 (97%) EPI591884 A/duck/Jiangxi/23970/2013 (A/H0) segment 6 (NA) 2425.8 0.000000e+00 1375/1406 (97%) EPI690794 A/goose/Jiangsu/QD5/2014 (A/H5N8) segment 6 (NA) 2420.2 0.000000e+00 1374/1406 (97%) EPI561493 A/Baikal teal/Korea/H52/2014 (A/H5N8) segment 6 (NA) 2420.2 0.000000e+00 1374/1406 (97%) EPI530990 A/duck/Zhejiang/6D18/2013 (A/H5N8) segment 6 (NA) 2420.2 0.000000e+00 1375/1407 (97%) EPI509700 A/breeder duck/Korea/Gochang1/2014 (A/H5N8) segment 6 (NA) 2420.2 0.000000e+00 1374/1406 (97%) EPI762160 A/goose/Eastern China/CZ/2013 (A/H5N8) segment 6 (NA) 2414.7 0.000000e+00 1373/1406 (97%) EPI703638 A/duck/Eastern China/S1210/2013 (A/H5N8) segment 6 (NA) 2414.7 0.000000e+00 1373/1406 (97%) EPI530989 A/duck/Zhejiang/W24/2013 (A/H5N8) segment 6 (NA) 2414.7 0.000000e+00 1374/1407 (97%) EPI690802 A/goose/Shandong/WFSG1/2014 (A/H5N8) segment 6 (NA) 2409.2 0.000000e+00 1372/1406 (97%) EPI681355 A/duck/Zhejiang/925019/2014 (A/H5N8) segment 6 (NA) 2409.2 0.000000e+00 1372/1406 (97%) EPI703635 A/duck/Eastern China/L1021/2012 (A/H5N8) segment 6 (NA) 2403.6 0.000000e+00 1371/1406 (97%) EPI681356 A/duck/Zhejiang/925169/2014 (A/H5N8) segment 6 (NA) 2403.6 0.000000e+00 1372/1407 (97%) EPI646030 A/goose/Jiangsu/WX202/2014 (A/H5N8) segment 6 (NA) 2398.1 0.000000e+00 1370/1406 (97%) EPI507675 A/mallard duck/Shanghai/SH-9/2013 (A/H5N8) segment 6 (NA) 2398.1 0.000000e+00 1371/1407 (97%) EPI602039 A/duck/Ningbo/3262/2013 (A/H0) segment 6 (NA) 2396.2 0.000000e+00 1351/1378 (98%) EPI762152 A/duck/Eastern China/JY/2014 (A/H5N8) segment 6 (NA) 2392.5 0.000000e+00 1369/1406 (97%) EPI703634 A/duck/Eastern China/L0722/2012 (A/H5N8) segment 6 (NA) 2392.5 0.000000e+00 1369/1406 (97%) EPI703633 A/duck/Eastern China/L0611/2011 (A/H5N8) segment 6 (NA) 2387.0 0.000000e+00 1369/1407 (97%) EPI703631 A/duck/Eastern China/L0405/2010 (A/H5N8) segment 6 (NA) 2387.0 0.000000e+00 1368/1406 (97%) EPI690810 A/goose/Yangzhou/0420/2014 (A/H5N8) segment 6 (NA) 2387.0 0.000000e+00 1368/1406 (97%) EPI703647 A/goose/Eastern China/S0408/2014 (A/H5N8) segment 6 (NA) 2381.5 0.000000e+00 1367/1406 (97%) EPI703632 A/duck/Eastern China/L0423/2011 (A/H5N8) segment 6 (NA) 2359.3 0.000000e+00 1358/1398 (97%) EPI442019 A/duck/Jiangsu/k1203/2010 (A/H5N8) segment 6 (NA) 2342.7 0.000000e+00 1353/1395 (96%) EPI544894 A/duck/Shandong/Q1/2013 (A/H5N8) segment 6 (NA) 2337.1 0.000000e+00 1360/1407 (96%) EPI561600 A/broiler duck/Korea/H133/2014 (A/H5N8) segment 6 (NA) 2331.6 0.000000e+00 1358/1406 (96%) EPI718279 A/ostrich/Korea/H829/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI703639 A/goose/Eastern China/L1204/2012 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI703637 A/goose/Eastern China/L1214/2012 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI703636 A/duck/Eastern China/L1120/2012 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI585633 A/baikal teal/Korea/2417/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI585632 A/baikal teal/Korea/2416/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI585630 A/baikal teal/Korea/2406/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI585629 A/baikal teal/Korea/2403/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI585628 A/baikal teal/Korea/2402/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI585626 A/baikal teal/Korea/1458/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI585624 A/baikal teal/Korea/1456/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI585623 A/baikal teal/Korea/1454/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI585620 A/baikal teal/Korea/1448/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI585619 A/baikal teal/Korea/1447/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI585617 A/baikal teal/Korea/1445/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI585616 A/baikal teal/Korea/1441/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI561692 A/common teal/Korea/H455-30/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI561676 A/bean goose/Korea/H328/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI561662 A/Korean native chicken/Korea/H257/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI561655 A/breeder chicken/Korea/H250/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI561648 A/breeder duck/Korea/H249/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI561635 A/white-fronted goose/Korea/H231/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI561628 A/mallard/Korea/H207/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI561621 A/breeder duck/Korea/H200/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI561614 A/breeder duck/Korea/H158/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI561579 A/breeder chicken/Korea/H122/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI561510 A/bean goose/Korea/H53/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI561362 A/broiler duck/Korea/H49/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI561355 A/broiler duck/Korea/H48/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI561350 A/broiler duck/Korea/H47/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI561343 A/Baikal teal/Korea/H41/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI561209 A/broiler duck/Korea/H31/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI561198 A/broiler duck/Korea/H29/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI509714 A/baikal teal/Korea/Donglim3/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI509706 A/broiler duck/Korea/Buan2/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI585627 A/baikal teal/Korea/2399/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1356/1406 (96%) EPI585625 A/baikal teal/Korea/1457/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1356/1406 (96%) EPI585622 A/baikal teal/Korea/1452/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1356/1406 (96%) EPI561707 A/bean goose/Korea/H40/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1356/1406 (96%) EPI561699 A/spot-billed duck/Korea/H455-42/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1356/1406 (96%) EPI561683 A/tundra swan/Korea/H411/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1356/1406 (96%) EPI561669 A/mallard/Korea/H297/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1356/1406 (96%) EPI561607 A/broiler duck/Korea/H145/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1356/1406 (96%) EPI561593 A/breeder duck/Korea/H128/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1356/1406 (96%) EPI561572 A/Baikal teal/Korea/H96/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1356/1406 (96%) EPI561565 A/Baikal teal/Korea/H84/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1356/1406 (96%) EPI561558 A/Coot/Korea/H81/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1357/1407 (96%) EPI561551 A/Baikal teal/Korea/H80/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1357/1407 (96%) EPI561544 A/Baikal teal/Korea/H68/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1356/1406 (96%) EPI561531 A/Baikal teal/Korea/H66/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1356/1406 (96%) EPI561524 A/broiler duck/Korea/H65/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1356/1406 (96%) EPI561517 A/Baikal teal/Korea/H62/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1356/1406 (96%) EPI552748 A/turkey/Germany/AR2485-86-L00899/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1356/1406 (96%) EPI548495 A/duck/Chiba/26-372-61/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1357/1407 (96%) Link to comment Share on other sites More sharing options...
niman Posted November 30, 2016 Author Report Share Posted November 30, 2016 Descriptions Align Segment-ID Name Score E-Value Identity EPI861570 A/mute swan/Croatia/70/2016 (A/H5N8) segment 7 (MP) 1794.2 0.000000e+00 971/971 (100%) EPI860237 A/wild duck/Poland/82A/2016 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI773760 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI863860 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 7 (MP) 1766.5 0.000000e+00 966/971 (99%) EPI863852 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 7 (MP) 1762.8 0.000000e+00 965/971 (99%) EPI863837 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 7 (MP) 1762.8 0.000000e+00 965/971 (99%) EPI863829 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 7 (MP) 1762.8 0.000000e+00 965/971 (99%) EPI863868 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 7 (MP) 1761.0 0.000000e+00 965/971 (99%) EPI823751 A/wild duck/Tyva/35/2016 (A/H5N8) segment 7 (MP) 1755.4 0.000000e+00 964/971 (99%) EPI823463 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 7 (MP) 1755.4 0.000000e+00 964/971 (99%) EPI836617 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 7 (MP) 1749.9 0.000000e+00 963/971 (99%) EPI823759 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 7 (MP) 1749.9 0.000000e+00 963/971 (99%) EPI836609 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 7 (MP) 1744.4 0.000000e+00 962/971 (99%) EPI704539 A/duck/Mongolia/709/2015 (A/H10N7) segment 7 (MP) 1705.6 0.000000e+00 955/971 (98%) EPI704531 A/duck/Mongolia/626/2015 (A/H10N7) segment 7 (MP) 1705.6 0.000000e+00 955/971 (98%) EPI704515 A/duck/Mongolia/499/2015 (A/H10N7) segment 7 (MP) 1705.6 0.000000e+00 955/971 (98%) EPI704343 A/duck/Mongolia/179/2015 (A/H3N8) segment 7 (MP) 1705.6 0.000000e+00 955/971 (98%) EPI704335 A/duck/Mongolia/173/2015 (A/H3N8) segment 7 (MP) 1705.6 0.000000e+00 955/971 (98%) EPI692379 A/duck/Chongqing/S2086/2012 (A/H4N8) segment 7 (MP) 1700.0 0.000000e+00 954/971 (98%) EPI682954 A/wild bird/Wuhan/CDHN15/2015 (A/H6N2) segment 7 (MP) 1694.5 0.000000e+00 953/971 (98%) EPI682953 A/wild bird/Wuhan/CDHN09/2015 (A/H6N2) segment 7 (MP) 1694.5 0.000000e+00 953/971 (98%) EPI590050 A/duck/Vietnam/LBM798/2014 (A/H3N6) segment 7 (MP) 1694.5 0.000000e+00 953/971 (98%) EPI467812 A/European teal/Chany/63/2011 (A/H3N8) segment 7 (MP) 1694.5 0.000000e+00 953/971 (98%) EPI461550 A/duck/Hunan/S11090/2012 (A/H4N6) segment 7 (MP) 1689.0 0.000000e+00 952/971 (98%) EPI682981 A/duck/Wuhan/WHYF05/2014 (A/H9N2) segment 7 (MP) 1683.4 0.000000e+00 952/972 (97%) EPI704449 A/duck/Mongolia/996/2015 (A/H3N8) segment 7 (MP) 1677.9 0.000000e+00 950/971 (97%) EPI704417 A/duck/Mongolia/543/2015 (A/H4N6) segment 7 (MP) 1677.9 0.000000e+00 950/971 (97%) EPI601676 A/duck/Jiangxi/34864/2013 (A/H0) segment 7 (MP) 1677.9 0.000000e+00 950/971 (97%) EPI599826 A/duck/Jiangxi/32213/2013 (A/H7N6) segment 7 (MP) 1677.9 0.000000e+00 950/971 (97%) EPI548388 A/chicken/Jilin/SD001/2014 (A/H9N2) segment 7 (MP) 1674.2 0.000000e+00 949/971 (97%) EPI682951 A/wild bird/Wuhan/CDHN173/2015 (A/H11N9) segment 7 (MP) 1672.3 0.000000e+00 949/971 (97%) EPI682950 A/wild bird/Wuhan/CDHN22/2015 (A/H11N9) segment 7 (MP) 1672.3 0.000000e+00 949/971 (97%) EPI682949 A/wild bird/Wuhan/CDHN01/2015 (A/H11N9) segment 7 (MP) 1672.3 0.000000e+00 949/971 (97%) EPI590087 A/duck/Quang Ninh/90c112/2013 (A/H3N2) segment 7 (MP) 1672.3 0.000000e+00 949/971 (97%) EPI773768 A/chicken/Netherlands/16007311-037041/2016 (A/H7N9) segment 7 (MP) 1666.8 0.000000e+00 948/971 (97%) EPI753587 A/duck/Hokkaido/W9/2015 (A/H1N1) segment 7 (MP) 1666.8 0.000000e+00 948/971 (97%) EPI704294 A/duck/Mongolia/127/2015 (A/H4N6) segment 7 (MP) 1666.8 0.000000e+00 948/971 (97%) EPI704270 A/duck/Mongolia/101/2015 (A/H4N6) segment 7 (MP) 1666.8 0.000000e+00 948/971 (97%) EPI602450 A/duck/Jiangxi/33665/2013 (A/H10N3) segment 7 (MP) 1666.8 0.000000e+00 948/971 (97%) EPI602443 A/duck/Jiangxi/33663/2013 (A/H10N3) segment 7 (MP) 1666.8 0.000000e+00 948/971 (97%) EPI602436 A/duck/Jiangxi/33651/2013 (A/H10N3) segment 7 (MP) 1666.8 0.000000e+00 948/971 (97%) EPI602429 A/duck/Jiangxi/33637/2013 (A/H10N3) segment 7 (MP) 1666.8 0.000000e+00 948/971 (97%) EPI602405 A/duck/Jiangxi/33759/2013 (A/H10N3) segment 7 (MP) 1666.8 0.000000e+00 948/971 (97%) EPI602398 A/duck/Jiangxi/33757/2013 (A/H10N3) segment 7 (MP) 1666.8 0.000000e+00 948/971 (97%) EPI602391 A/duck/Jiangxi/33753/2013 (A/H10N3) segment 7 (MP) 1666.8 0.000000e+00 948/971 (97%) EPI602384 A/duck/Jiangxi/33713/2013 (A/H10N3) segment 7 (MP) 1666.8 0.000000e+00 948/971 (97%) EPI602377 A/duck/Jiangxi/33699/2013 (A/H10N3) segment 7 (MP) 1666.8 0.000000e+00 948/971 (97%) EPI602370 A/duck/Jiangxi/33695/2013 (A/H10N3) segment 7 (MP) 1666.8 0.000000e+00 948/971 (97%) EPI602352 A/duck/Jiangxi/33777/2013 (A/H10N3) segment 7 (MP) 1666.8 0.000000e+00 948/971 (97%) EPI602345 A/duck/Jiangxi/33775/2013 (A/H10N3) segment 7 (MP) 1666.8 0.000000e+00 948/971 (97%) EPI602338 A/duck/Jiangxi/33769/2013 (A/H10N3) segment 7 (MP) 1666.8 0.000000e+00 948/971 (97%) EPI602331 A/duck/Jiangxi/33765/2013 (A/H10N3) segment 7 (MP) 1666.8 0.000000e+00 948/971 (97%) EPI602324 A/duck/Jiangxi/33763/2013 (A/H10N3) segment 7 (MP) 1666.8 0.000000e+00 948/971 (97%) EPI601720 A/duck/Jiangxi/29297/2013 (A/H0) segment 7 (MP) 1666.8 0.000000e+00 948/971 (97%) EPI599882 A/duck/Jiangxi/33779/2013 (A/H10N3) segment 7 (MP) 1666.8 0.000000e+00 948/971 (97%) EPI599875 A/duck/Jiangxi/33778/2013 (A/H10N3) segment 7 (MP) 1666.8 0.000000e+00 948/971 (97%) EPI599868 A/duck/Jiangxi/33747/2013 (A/H10N3) segment 7 (MP) 1666.8 0.000000e+00 948/971 (97%) EPI599861 A/duck/Jiangxi/33744/2013 (A/H10N3) segment 7 (MP) 1666.8 0.000000e+00 948/971 (97%) EPI599854 A/duck/Jiangxi/33701/2013 (A/H10N3) segment 7 (MP) 1666.8 0.000000e+00 948/971 (97%) EPI599847 A/duck/Jiangxi/33653/2013 (A/H10N3) segment 7 (MP) 1666.8 0.000000e+00 948/971 (97%) EPI599840 A/duck/Jiangxi/33641/2013 (A/H10N3) segment 7 (MP) 1666.8 0.000000e+00 948/971 (97%) EPI599833 A/duck/Jiangxi/33629/2013 (A/H10N3) segment 7 (MP) 1666.8 0.000000e+00 948/971 (97%) EPI704506 A/duck/Mongolia/326/2015 (A/H10N3) segment 7 (MP) 1661.3 0.000000e+00 948/972 (97%) EPI704498 A/duck/Mongolia/245/2015 (A/H10N3) segment 7 (MP) 1661.3 0.000000e+00 948/972 (97%) EPI704302 A/duck/Mongolia/141/2015 (A/H0N2) segment 7 (MP) 1661.3 0.000000e+00 948/972 (97%) EPI692667 A/chicken/Vietnam/HU1-976/2014 (A/H9N2) segment 7 (MP) 1661.3 0.000000e+00 947/971 (97%) EPI372429 A/shoveler/Egypt/00004-NAMRU3/2007 (A/H10N9) segment 7 (MP) 1661.3 0.000000e+00 948/972 (97%) EPI372421 A/teal/Egypt/01207-NAMRU3/2007 (A/H10N7) segment 7 (MP) 1661.3 0.000000e+00 948/972 (97%) EPI363933 A/duck/Guizhou/1560/2007 (A/H6N8) segment 7 (MP) 1661.3 0.000000e+00 948/972 (97%) EPI316755 A/mallard/Czech Republic/13438-29K/2010 (A/H11N9) segment 7 (MP) 1661.3 0.000000e+00 947/971 (97%) EPI306424 A/shoveler/Koymor/118/2009 (A/H3) segment 7 (MP) 1661.3 0.000000e+00 947/971 (97%) EPI841782 A/chicken/Wales/600-020823/2014 (A/H4N6) segment 7 (MP) 1655.7 0.000000e+00 947/972 (97%) EPI693701 A/duck/Mongolia/20/2015 (A/H3N8) segment 7 (MP) 1655.7 0.000000e+00 946/971 (97%) EPI514272 A/mallard/Sweden/52334/2006 (A/H4N6) segment 7 (MP) 1655.7 0.000000e+00 947/972 (97%) EPI514029 A/mallard/Sweden/68575/2007 (A/H4N6) segment 7 (MP) 1655.7 0.000000e+00 947/972 (97%) EPI439562 A/avian/Israel/824/2005 (A/H10N2) segment 7 (MP) 1655.7 0.000000e+00 947/972 (97%) EPI248496 A/mallard/Germany-RP/R193/09 (A/H1N1) segment 7 (MP) 1655.7 0.000000e+00 947/972 (97%) EPI190341 A/mallard/Netherlands/1/2006 (A/H8N4) segment 7 (MP) 1655.7 0.000000e+00 947/972 (97%) EPI685607 A/duck/Vietnam/HU1-151/2014 (A/H11N7) segment 7 (MP) 1650.2 0.000000e+00 945/971 (97%) EPI647783 A/duck/Vietnam/HU1-148/2014 (A/H11N7) segment 7 (MP) 1650.2 0.000000e+00 945/971 (97%) EPI647782 A/duck/Vietnam/HU1-16/2014 (A/H11N7) segment 7 (MP) 1650.2 0.000000e+00 945/971 (97%) EPI647780 A/muscovy duck/Vietnam/HU1-399/2014 (A/H11N7) segment 7 (MP) 1650.2 0.000000e+00 945/971 (97%) EPI619262 A/mallard/Sweden/60041/2007 (A/H8N2) segment 7 (MP) 1650.2 0.000000e+00 946/972 (97%) EPI618959 A/mallard/Sweden/1417/2002 (A/H10N7) segment 7 (MP) 1650.2 0.000000e+00 946/972 (97%) EPI513559 A/mallard/Sweden/101180/2009 (A/H4N6) segment 7 (MP) 1650.2 0.000000e+00 946/972 (97%) EPI513552 A/mallard/Sweden/101081/2009 (A/H4N6) segment 7 (MP) 1650.2 0.000000e+00 946/972 (97%) EPI513538 A/mallard/Sweden/100881/2009 (A/H4N6) segment 7 (MP) 1650.2 0.000000e+00 946/972 (97%) EPI513499 A/mallard/Sweden/101431/2009 (A/H4N6) segment 7 (MP) 1650.2 0.000000e+00 946/972 (97%) EPI513485 A/mallard/Sweden/101298/2009 (A/H4N6) segment 7 (MP) 1650.2 0.000000e+00 946/972 (97%) EPI377995 A/common teal/Netherlands/2/2008 (A/H2N3) segment 7 (MP) 1650.2 0.000000e+00 946/972 (97%) EPI372437 A/shoveler/Egypt/00006-NAMRU3/2007 (A/H10N1) segment 7 (MP) 1650.2 0.000000e+00 946/972 (97%) EPI372413 A/shoveler/Egypt/00241-NAMRU3/2007 (A/H7N3) segment 7 (MP) 1650.2 0.000000e+00 946/972 (97%) EPI372405 A/shoveler/Egypt/00215-NAMRU3/2007 (A/H7N9) segment 7 (MP) 1650.2 0.000000e+00 946/972 (97%) EPI372397 A/shoveler/Egypt/01198-NAMRU3/2007 (A/H10N7) segment 7 (MP) 1650.2 0.000000e+00 946/972 (97%) EPI296609 A/mallard/Sweden/90/2005 (A/H11N9) segment 7 (MP) 1650.2 0.000000e+00 946/972 (97%) EPI231188 A/spot-billed duck/Korea/540/2008 (A/H6N1) segment 7 (MP) 1650.2 0.000000e+00 946/972 (97%) EPI220565 A/mallard/Czech Republic/15307-17/2008 (A/H0) segment 7 (MP) 1650.2 0.000000e+00 946/972 (97%) EPI190357 A/gadwall/Netherlands/1/2006 (A/H9N2) segment 7 (MP) 1650.2 0.000000e+00 946/972 (97%) EPI181962 A/mallard/Netherlands/2/2005 (A/H4N2) segment 7 (MP) 1650.2 0.000000e+00 946/972 (97%) EPI231180 A/spot-billed duck/Korea/537/2008 (A/H6N1) segment 7 (MP) 1648.3 0.000000e+00 945/971 (97%) 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niman Posted November 30, 2016 Author Report Share Posted November 30, 2016 Descriptions Align Segment-ID Name Score E-Value Identity EPI861571 A/mute swan/Croatia/70/2016 (A/H5N8) segment 8 (NS) 1482.1 0.000000e+00 812/812 (100%) EPI863869 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 8 (NS) 1476.6 0.000000e+00 806/812 (99%) EPI863853 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 8 (NS) 1465.5 0.000000e+00 804/812 (99%) EPI863838 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 8 (NS) 1465.5 0.000000e+00 804/812 (99%) EPI863830 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 8 (NS) 1465.5 0.000000e+00 804/812 (99%) EPI860238 A/wild duck/Poland/82A/2016 (A/H5N8) segment 8 (NS) 1465.5 0.000000e+00 804/812 (99%) EPI863861 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 8 (NS) 1461.8 0.000000e+00 803/812 (98%) EPI836618 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 8 (NS) 1460.0 0.000000e+00 803/812 (98%) EPI836610 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 8 (NS) 1460.0 0.000000e+00 803/812 (98%) EPI823760 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 8 (NS) 1460.0 0.000000e+00 803/812 (98%) EPI823752 A/wild duck/Tyva/35/2016 (A/H5N8) segment 8 (NS) 1460.0 0.000000e+00 803/812 (98%) EPI823464 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 8 (NS) 1460.0 0.000000e+00 803/812 (98%) EPI773761 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 8 (NS) 1454.4 0.000000e+00 802/812 (98%) EPI703688 A/duck/Eastern China/S1109/2014 (A/H5N8) segment 8 (NS) 1443.4 0.000000e+00 800/812 (98%) EPI690812 A/goose/Yangzhou/0420/2014 (A/H5N8) segment 8 (NS) 1432.3 0.000000e+00 799/813 (98%) EPI764785 A/duck/Shaoxing/5240/2013 (A/H0) segment 8 (NS) 1421.2 0.000000e+00 797/813 (98%) EPI690804 A/goose/Shandong/WFSG1/2014 (A/H5N8) segment 8 (NS) 1421.2 0.000000e+00 797/813 (98%) EPI690796 A/goose/Jiangsu/QD5/2014 (A/H5N8) segment 8 (NS) 1421.2 0.000000e+00 797/813 (98%) EPI530993 A/duck/Zhejiang/W24/2013 (A/H5N8) segment 8 (NS) 1415.7 0.000000e+00 796/813 (97%) EPI703682 A/duck/Eastern China/S0215/2014 (A/H5N8) segment 8 (NS) 1410.1 0.000000e+00 795/813 (97%) EPI762162 A/goose/Eastern China/CZ/2013 (A/H5N8) segment 8 (NS) 1404.6 0.000000e+00 794/813 (97%) EPI602042 A/duck/Ningbo/3262/2013 (A/H0) segment 8 (NS) 1404.6 0.000000e+00 794/813 (97%) EPI703679 A/duck/Eastern China/S1210/2013 (A/H5N8) segment 8 (NS) 1399.0 0.000000e+00 793/813 (97%) EPI643151 A/Environment/Guangdong/GZ55/2013(H5N8) (A/H5N8) segment 8 (NS) 1399.0 0.000000e+00 794/814 (97%) EPI561505 A/Baikal teal/Korea/H52/2014 (A/H5N8) segment 8 (NS) 1399.0 0.000000e+00 793/813 (97%) EPI530994 A/duck/Zhejiang/6D18/2013 (A/H5N8) segment 8 (NS) 1399.0 0.000000e+00 793/813 (97%) EPI509710 A/breeder duck/Korea/Gochang1/2014 (A/H5N8) segment 8 (NS) 1399.0 0.000000e+00 793/813 (97%) EPI507677 A/mallard duck/Shanghai/SH-9/2013 (A/H5N8) segment 8 (NS) 1399.0 0.000000e+00 794/814 (97%) EPI762154 A/duck/Eastern China/JY/2014 (A/H5N8) segment 8 (NS) 1393.5 0.000000e+00 792/813 (97%) EPI703687 A/goose/Eastern China/S0408/2014 (A/H5N8) segment 8 (NS) 1393.5 0.000000e+00 792/813 (97%) EPI681416 A/goose/Zhejiang/925104/2014 (A/H5N8) segment 8 (NS) 1393.5 0.000000e+00 792/813 (97%) EPI681415 A/goose/Zhejiang/925037/2014 (A/H5N8) segment 8 (NS) 1388.0 0.000000e+00 791/813 (97%) EPI681406 A/goose/Zhejiang/925106/2014 (A/H5N6) segment 8 (NS) 1388.0 0.000000e+00 791/813 (97%) EPI646032 A/goose/Jiangsu/WX202/2014 (A/H5N8) segment 8 (NS) 1365.8 0.000000e+00 787/813 (96%) EPI681414 A/duck/Zhejiang/925169/2014 (A/H5N8) segment 8 (NS) 1360.3 0.000000e+00 786/813 (96%) EPI681413 A/duck/Zhejiang/925019/2014 (A/H5N8) segment 8 (NS) 1360.3 0.000000e+00 786/813 (96%) EPI461611 A/duck/Hunan/S11643/2012 (A/H4N9) segment 8 (NS) 1354.7 0.000000e+00 785/813 (96%) EPI461603 A/duck/Hunan/S11547/2012 (A/H4N9) segment 8 (NS) 1354.7 0.000000e+00 785/813 (96%) EPI837813 A/environment/Korea/W136/2006 (A/H7N7) segment 8 (NS) 1343.6 0.000000e+00 783/813 (96%) EPI470634 A/duck/Jiangxi/21714/2011 (A/H11N9) segment 8 (NS) 1343.6 0.000000e+00 783/813 (96%) EPI392653 A/wild bird/Korea/A72/10 (A/H7N7) segment 8 (NS) 1343.6 0.000000e+00 783/813 (96%) EPI299310 A/avian/Japan/8KI0068/2008 (A/H3N6) segment 8 (NS) 1343.6 0.000000e+00 783/813 (96%) EPI837815 A/environment/Korea/W148/2006 (A/H7N7) segment 8 (NS) 1338.1 0.000000e+00 782/813 (96%) EPI837814 A/environment/Korea/W143/2006 (A/H7N7) segment 8 (NS) 1338.1 0.000000e+00 782/813 (96%) EPI470663 A/northern shoveler/Hong Kong/MPK276/2009 (A/H11N9) segment 8 (NS) 1338.1 0.000000e+00 782/813 (96%) EPI387512 A/ruddy shelduck/Mongolia/2-79/2007 (A/H3N8) segment 8 (NS) 1338.1 0.000000e+00 782/813 (96%) EPI387496 A/pintail/Mongolia/2-65/2007 (A/H3N8) segment 8 (NS) 1338.1 0.000000e+00 782/813 (96%) EPI363934 A/duck/Guizhou/1560/2007 (A/H6N8) segment 8 (NS) 1338.1 0.000000e+00 782/813 (96%) EPI314535 A/avian/Japan/8KI0184/2008 (A/H4N6) segment 8 (NS) 1338.1 0.000000e+00 782/813 (96%) EPI299262 A/avian/Japan/8KI0185/2008 (A/H4N6) segment 8 (NS) 1338.1 0.000000e+00 782/813 (96%) EPI299254 A/avian/Japan/8KI0195/2008 (A/H6N8) segment 8 (NS) 1338.1 0.000000e+00 782/813 (96%) EPI284654 A/duck/Hunan/8-19/2009 (A/H4N2) segment 8 (NS) 1338.1 0.000000e+00 782/813 (96%) EPI268628 A/duck/Fujian/12035/2005 (A/H6N6) segment 8 (NS) 1338.1 0.000000e+00 782/813 (96%) EPI230017 A/red crested pochard/Mongolia/1915/2006 (A/H3N6) segment 8 (NS) 1338.1 0.000000e+00 782/813 (96%) EPI262750 A/aquatic bird/Korea/w209/2007 (A/H5N3) segment 8 (NS) 1336.2 0.000000e+00 781/812 (96%) EPI461791 A/environment/Hunan/S11511/2012 (A/H4N9) segment 8 (NS) 1332.6 0.000000e+00 781/813 (96%) EPI446539 A/environment/Jiangxi/28/2009 (A/H11N9) segment 8 (NS) 1332.6 0.000000e+00 781/813 (96%) EPI446518 A/environment/Jiangxi/26/2009 (A/H11N9) segment 8 (NS) 1332.6 0.000000e+00 781/813 (96%) EPI420071 A/mallard/California/2578V/2011 (A/H0) segment 8 (NS) 1332.6 0.000000e+00 781/813 (96%) EPI419972 A/mallard/California/2563V/2011 (A/H4N6) segment 8 (NS) 1332.6 0.000000e+00 781/813 (96%) EPI419965 A/mallard/California/2563P/2011 (A/H4N6) segment 8 (NS) 1332.6 0.000000e+00 781/813 (96%) EPI419907 A/mallard/California/2552V/2011 (A/H4N8) segment 8 (NS) 1332.6 0.000000e+00 781/813 (96%) EPI314207 A/wild duck/Taiwan/WB1364/2007 (A/H4N6) segment 8 (NS) 1332.6 0.000000e+00 781/813 (96%) EPI837810 A/aquatic bird/Korea/w44/2005 (A/H7N3) segment 8 (NS) 1327.0 0.000000e+00 780/813 (95%) EPI589175 A/duck/China/J1/2012 (A/H4N6) segment 8 (NS) 1327.0 0.000000e+00 780/813 (95%) EPI540193 A/duck/Bangladesh/1753/2010 (A/H11N3) segment 8 (NS) 1327.0 0.000000e+00 780/813 (95%) EPI508167 A/wild duck/Korea/CSM27-12/2009 (A/H7N6) segment 8 (NS) 1327.0 0.000000e+00 780/813 (95%) EPI504039 A/wild duck/SH17-1/2008 (A/H2N3) segment 8 (NS) 1327.0 0.000000e+00 780/813 (95%) EPI420126 A/mallard/California/2594V/2011 (A/H4N6) segment 8 (NS) 1327.0 0.000000e+00 780/813 (95%) EPI420119 A/mallard/California/2594P/2011 (A/H4N6) segment 8 (NS) 1327.0 0.000000e+00 780/813 (95%) EPI384049 A/duck/Thailand/CU-LM7288T/2010 (A/H7N6) segment 8 (NS) 1327.0 0.000000e+00 780/813 (95%) EPI384039 A/duck/Thailand/CU-LM7288C/2010 (A/H7N6) segment 8 (NS) 1327.0 0.000000e+00 780/813 (95%) EPI384017 A/duck/Thailand/CU-LM7283C/2010 (A/H7N6) segment 8 (NS) 1327.0 0.000000e+00 780/813 (95%) EPI383995 A/duck/Thailand/CU-LM7283T/2010 (A/H7N6) segment 8 (NS) 1327.0 0.000000e+00 780/813 (95%) EPI383983 A/duck/Thailand/CU-LM7285C/2010 (A/H7N6) segment 8 (NS) 1327.0 0.000000e+00 780/813 (95%) EPI383953 A/duck/Thailand/CU-LM7280C/2010 (A/H7N6) segment 8 (NS) 1327.0 0.000000e+00 780/813 (95%) EPI383937 A/duck/Thailand/CU-LM7284C/2010 (A/H7N6) segment 8 (NS) 1327.0 0.000000e+00 780/813 (95%) EPI276132 A/pintail/Akita/1364/2008 (A/H1N2) segment 8 (NS) 1327.0 0.000000e+00 780/813 (95%) EPI276127 A/pintail/Akita/1353/2008 (A/H1N2) segment 8 (NS) 1327.0 0.000000e+00 780/813 (95%) EPI760217 A/duck/Hunan/161/2015 (A/H3N6) segment 8 (NS) 1321.5 0.000000e+00 779/813 (95%) EPI470632 A/duck/Jiangxi/22041/2008 (A/H4N9) segment 8 (NS) 1321.5 0.000000e+00 779/813 (95%) EPI439096 A/chicken/Taiwan/TC149/2010 (A/H4) segment 8 (NS) 1321.5 0.000000e+00 779/813 (95%) EPI419937 A/mallard/California/2555V/2011 (A/H11N9) segment 8 (NS) 1321.5 0.000000e+00 779/813 (95%) EPI419819 A/mallard/California/2533V/2011 (A/H4N6) segment 8 (NS) 1321.5 0.000000e+00 779/813 (95%) EPI419777 A/mallard/California/2525P/2011 (A/H4N6) segment 8 (NS) 1321.5 0.000000e+00 779/813 (95%) EPI418438 A/mallard/California/2525V/2011 (A/H0) segment 8 (NS) 1321.5 0.000000e+00 779/813 (95%) EPI392651 A/wild bird/Korea/A330/09 (A/H7N7) segment 8 (NS) 1321.5 0.000000e+00 780/814 (95%) EPI392650 A/wild bird/Korea/A331/09 (A/H7N7) segment 8 (NS) 1321.5 0.000000e+00 780/814 (95%) EPI389736 A/duck/Eastern China/318/2003 (A/H11) segment 8 (NS) 1321.5 0.000000e+00 779/813 (95%) EPI383969 A/duck/Thailand/CU-LM7279T/2010 (A/H7N6) segment 8 (NS) 1321.5 0.000000e+00 779/813 (95%) EPI296191 A/wild duck/Korea/YS44/2004 (A/H1N2) segment 8 (NS) 1321.5 0.000000e+00 779/813 (95%) EPI276122 A/pintail/Akita/1265/2008 (A/H1N2) segment 8 (NS) 1321.5 0.000000e+00 779/813 (95%) EPI276117 A/pintail/Miyagi/1472/2008 (A/H1N1) segment 8 (NS) 1321.5 0.000000e+00 779/813 (95%) EPI268476 A/mallard/Jiangxi/13228/2005 (A/H6N1) segment 8 (NS) 1321.5 0.000000e+00 779/813 (95%) EPI256790 A/muscovy duck/Thailand/CU-LM4761/2009 (A/H10N3) segment 8 (NS) 1321.5 0.000000e+00 779/813 (95%) EPI256782 A/muscovy duck/Thailand/CU-LM4759/2009 (A/H10N3) segment 8 (NS) 1321.5 0.000000e+00 779/813 (95%) EPI256774 A/muscovy duck/Thailand/CU-LM4754/2009 (A/H10N3) segment 8 (NS) 1321.5 0.000000e+00 779/813 (95%) EPI182408 A/duck/Primorie/2633/01 (A/H5N3) segment 8 (NS) 1321.5 0.000000e+00 779/813 (95%) EPI170823 A/duck/Primorie/2633/01 (A/H5N3) segment 8 (NS) 1321.5 0.000000e+00 779/813 (95%) EPI127084 A/aquatic bird/Korea/CN-1/2004 (A/H3N6) segment 8 (NS) 1321.5 0.000000e+00 779/813 (95%) Link to comment Share on other sites More sharing options...
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