National Veterinary Institute in Sweden has released a full H5N8 sequence (at GISAID) from chicken farm in Morap.

		A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016	EPI_ISL_238896	H5N8	Clinical Sample	2280	2297	2190	1704	1463	1413	982	835	---	---	2016-11-21
		A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016	EPI_ISL_238895	H5N8	Clinical sample	2280	2297	2190	1704	1463	1413	982	835	---	---	2016-11-21
		A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016	EPI_ISL_238894	H5N8	Clinocal Sample	2280	2297	2190	1704	1463	1413	982	835	---	---	2016-11-21
		A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016	EPI_ISL_238893	H5N8	Clinical sample	2280	2297	2190	1704	1463	1413	982	835	---	---	2016-11-21

Isolate detail

Isolate name:

A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016

Isolate ID:   EPI_ISL_238896      Passage details/history:   Clinical Sample

Type:   A / H5N8      Lineage:

Sample information

 

Collection date:   2016-11-21      Host   Gallus gallus      Additional host information:   http://www.oie.int/wahis_2/public/wahid.php/Reviewreport/Review?page_refer=MapFullEventReport&reportid=21663     Domestic status:   Domestic      Is vaccinated:   N

Location:   Sweden / Skane Lan / Helsingborgs Kommun      Additional location information:   City of Mörarp, Lat. 56.053495 Long. 12.848939      Health status:   Sick      Specimen source:   Organ      Strain or commercial product name used for vaccination:

Institute information

 

Originating lab:   National Veterinary Institute   Sample ID given by the sample provider:

Address:   National Veterinary Institute Ulls v 2B S-75189 75 189 Uppsala Sweden

Submitting lab:   National Veterinary Institute   Sample ID given by the submitting laboratory:         Authors:

Address:   National Veterinary Institute Ulls v 2B S-75189 75 189 Uppsala Sweden

Publication

Publication

In vivo antiviral resistance

 

• Phenotype
• Genotype
• Unspecified

Antiviral resistance tested by experimental procedures

Adamantanes:

Unknown

Oseltamivir:

Unknown

Zanamivir:

Unknown

Peramivir:

Unknown

Other:

Unknown

Additional information

Antigenic characterization:

Note:

 

Sequence

 

	segment	identifier	length	accession #	INSDC	Sequence
	PB2	A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016	2280	EPI863854
	PB1	A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016	2297	EPI863855
	PA	A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016	2190	EPI863856
	HA	A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016	1704	EPI863857
	NP	A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016	1463	EPI863858
	NA	A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016	1413	EPI863859
	MP	A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016	982	EPI863860
	NS	A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016	835	EPI863861

Submitter information

 

Submitter:   Zohari, Siamak       Submission Date:   2016-11-29      Last modifier:   Zohari, Siamak       Last modified:   2016-11-29

Address:   National Veterinary Institute Ulls v 2B S-75189 75 189 Uppsala Sweden