niman Posted January 28, 2016 Report Share Posted January 28, 2016 Evandro Chagas Institute has released four full Zika sequences from Brazil. Link to comment Share on other sites More sharing options...
niman Posted January 28, 2016 Author Report Share Posted January 28, 2016 LOCUS KU365777 10662 bp RNA linear VRL 26-JAN-2016 DEFINITION Zika virus strain BeH818995 polyprotein gene, complete cds. ACCESSION KU365777 VERSION KU365777.1 GI:975885964 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus; Spondweni virus group. REFERENCE 1 (bases 1 to 10662) AUTHORS Azevedo,R.S.S., Cruz,A.C.R., Nunes,B.T.D., Quieroz,A.L.N., Oliveira,R.S., Medeiros,D.B.A., Rodrigues,D.S.G., Silva,E.V.P., Pantoja,J.A.S., Massafra,J.M.V., Santos,M., Silva,S.P., Lemos,P.S., Santos,A.C.M., Vasconcelos,H.B., Lima,J.A., Rodrigues,S.G., Tesh,R.B., Nunes,M.R.T. and Vasconcelos,P.F.C. TITLE Genome sequences of four Zika virus isolates from Brazil JOURNAL Unpublished REFERENCE 2 (bases 1 to 10662) AUTHORS Azevedo,R.S.S., Cruz,A.C.R., Nunes,B.T.D., Quieroz,A.L.N., Oliveira,R.S., Medeiros,D.B.A., Rodrigues,D.S.G., Silva,E.V.P., Pantoja,J.A.S., Massafra,J.M.V., Santos,M., Silva,S.P., Lemos,P.S., Santos,A.C.M., Vasconcelos,H.B., Lima,J.A., Rodrigues,S.G., Tesh,R.B., Nunes,M.R.T. and Vasconcelos,P.F.C. TITLE Direct Submission JOURNAL Submitted (30-DEC-2015) Center for Technological Innovation, Evandro Chagas Institute, BR 316, Km 07, s/n, Ananindeua, Para 67030-000, Brazil COMMENT EMAIL: [email protected] ##Assembly-Data-START## Assembly method: Mira 4.0 and Geneious 7.0 Sequencing Technology: Ion and 454 ##Assembly-Data-END##. FEATURES Location/Qualifiers source 1..10662 /organism="Zika virus" /mol_type="genomic RNA" /strain="BeH818995" /host="Homo sapiens" /db_xref="taxon:64320" /country="Brazil" /collection_date="2015" CDS 94..10365 /codon_start=1 /product="polyprotein" /protein_id="AMA12084.1" /db_xref="GI:975885965" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSMVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVDLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST QVRYLGEEGSTPGVL" ORIGIN 1 gtgaatcaga ctgcgacagt tcgagtttga agcgaaagct agcaacagta tcaacaggtt 61 ttattttgga tttggaaacg agagtttctg gtcatgaaaa acccaaaaaa gaaatccgga 121 ggattccgga ttgtcaatat gctaaaacgc ggagtagccc gtgtgagccc ctttgggggc 181 ttgaagaggc tgccagccgg acttctgctg ggtcatgggc ccatcaggat ggtcttggcg 241 attctagcct ttttgagatt cacggcaatc aagccatcac tgggtctcat caatagatgg 301 ggttcagtgg ggaaaaaaga ggctatggaa ataataaaga agttcaagaa agatctggct 361 gccatgctga gaataatcaa tgctaggaag gagaagaaga gacgaggcgc agatactagt 421 gtcggaattg ttggcctcct gctgaccaca gctatggcag cggaggtcac tagacgtggg 481 agtgcatact atatgtactt ggacagaaac gatgctgggg aggccatatc ttttccaacc 541 acattgggga tgaataagtg ttatatacag atcatggatc ttggacacat gtgtgatgcc 601 accatgagct atgaatgccc tatgctggat gagggggtgg aaccagatga cgtcgattgt 661 tggtgcaaca cgacgtcaac ttgggttgtg tacggaacct gccatcacaa aaaaggtgaa 721 gcacggagat ctagaagagc tgtgacgctc ccctcccatt ccactaggaa gctgcaaacg 781 cggtcgcaaa cctggttgga atcaagagaa tacacaaagc acttgattag agtcgaaaat 841 tggatattta ggaaccctgg cttcgcgtta gcagcagctg ccatcgcttg gcttttggga 901 agctcaacga gccaaaaagt catatacttg gtcatgatac tgctgattgc cccggcatac 961 agcatcaggt gcataggagt cagcaatagg gactttgtgg aaggtatgtc aggtgggacc 1021 tgggttgatg ttgtcttgga acatggaggt tgtgtcaccg taatggcaca ggacaaaccg 1081 actgtcgaca tagagctggt tacaacaaca gtcagcaaca tggcggaggt aagatcctac 1141 tgctatgagg catcaatatc agacatggct tcggacagcc gctgcccaac acaaggtgaa 1201 gcctaccttg acaagcaatc agacactcaa tatgtctgca aaagaacgtt agtggacaga 1261 ggctggggaa atggatgtgg actttttggc aaagggagcc tggtgacatg cgctaagttt 1321 gcatgctcca agaaaatgac cgggaagagc atccagccag agaatctgga gtaccggata 1381 atgctgtcag ttcatggctc ccagcacagt gggatgattg ttaatgacac aggacatgaa 1441 actgatgaga atagagcgaa agttgagata acgcccaatt caccaagagc cgaagccacc 1501 ctggggggtt ttggaagcct aggacttgat tgtgaaccga ggacaggcct tgacttttca 1561 gatttgtatt acttgactat gaataacaag cactggttgg ttcacaagga gtggttccac 1621 gacattccat taccttggca cgctggggca gacaccggaa ctccacactg gaacaacaaa 1681 gaagcactgg tagagttcaa ggacgcacat gccaaaaggc aaactgtcgt ggttctaggg 1741 agtcaagaag gagcagttca cacggccctt gctggagctc tggaggctga gatggatggt 1801 gcaaagggaa ggctgtcctc tggccacttg aaatgtcgcc tgaaaatgga taaacttaga 1861 ttgaagggcg tgtcatactc cttgtgtact gcagcgttca cattcaccaa gatcccggct 1921 gaaacactgc acgggacagt cacagtggag gtacagtacg cagggacaga tggaccttgc 1981 aaggttccag ctcagatggc ggtggacatg caaactctga ccccagttgg gaggttgata 2041 accgctaacc ccgtaatcac tgaaagcact gagaactcta agatgatgct ggaacttgat 2101 ccaccatttg gggactctta cattgtcata ggagtcgggg agaagaagat cacccaccac 2161 tggcacagga gtggcagcac cattggaaaa gcatttgaag ccactgtgag aggtgccaag 2221 agaatggcag tcttgggaga cacagcctgg gactttggat cagttggagg cgctctcaac 2281 tcattgggca agggcatcca tcaaattttt ggagcagctt tcaaatcatt gtttggagga 2341 atgtcctggt tctcacaaat tctcattgga acgttgctga tgtggttggg tctgaacaca 2401 aagaatggat ctatttccct tatgtgcttg gccttagggg gagtgttgat cttcttatcc 2461 acagccgtct ctgctgatgt ggggtgctcg gtggacttct caaagaagga gacgagatgc 2521 ggtacagggg tgttcgtcta taacgacgtt gaagcctgga gggacaggta caagtaccat 2581 cctgactccc cccgtagatt ggcagcagca gtcaagcaag cctgggaaga tggtatctgc 2641 gggatctcct ctgtttcaag aatggaaaac atcatgtgga gatcagtaga aggggagctc 2701 aacgcaatcc tggaagagaa tggagttcaa ctgacggtcg ttgtgggatc tgtaaaaaac 2761 cccatgtgga gaggtccaca gagattgccc gtgcctgtga acgagctgcc ccacggctgg 2821 aaggcttggg ggaaatcgta cttcgtcaga gcagcaaaga caaataacag ctttgtcgtg 2881 gatggtgaca cactgaagga atgcccactc aaacatagag catggaacag ctttcttgtg 2941 gaggatcatg ggttcggggt atttcacact agtgtctggc tcaaggttag agaagattat 3001 tcattagagt gtgatccagc cgttattgga acagctgtta agggaaagga ggctgtacac 3061 agtgatctag gctactggat tgagagtgag aagaatgaca catggaggct gaagagggcc 3121 catctgatcg agatgaaaac atgtgaatgg ccaaagtccc acacattgtg gacagatgga 3181 atagaagaga gtgatctgat catacccaag tctttagctg ggccactcag ccatcacaat 3241 accagagagg gctacaggac ccaaatgaaa gggccatggc acagtgaaga gcttgaaatt 3301 cggtttgagg aatgcccagg cactaaggtc cacgtggagg aaacatgtgg aacaagagga 3361 ccatctctga gatcaaccac tgcaagcgga agggtgatcg aggaatggtg ctgcagggag 3421 tgcacaatgc ccccactgtc gttccgggct aaagatggct gttggtatgg aatggagata 3481 aggcccagga aagaaccaga aagcaactta gtaaggtcaa tggtgactgc aggatcaact 3541 gatcacatgg accacttctc ccttggagtg cttgtgattc tgctcatggt gcaggaaggg 3601 ctgaagaaga gaatgaccac aaagatcatc ataagcacat caatggcagt gctggtagct 3661 atgatcctgg gaggattttc aatgagtgac ctggctaagc ttgcaatttt gatgggtgcc 3721 accttcgcgg aaatgaacac tggaggagat gtagctcatc tggcgctgat agcggcattc 3781 aaagtcagac cagcgttgct ggtatctttc atcttcagag ctaattggac accccgtgaa 3841 agcatgctgc tggccttggc ctcgtgtctt ttgcaaactg cgatctccgc cttggaaggc 3901 gacctgatgg ttctcatcaa tggttttgct ttggcctggt tggcaatacg agcgatggtt 3961 gttccacgca ctgataacat caccttggca atcctggctg ctctgacacc actggcccgg 4021 ggcacactgc ttgtggcgtg gagagcaggc cttgctactt gcggggggtt tatgctcctc 4081 tctctgaagg gaaaaggcag tgtgaagaag aacttaccat ttgtcatggc cctgggacta 4141 accgctgtga ggctggtcga ccccatcaac gtggtgggac tgctgttgct cacaaggagt 4201 gggaagcgga gctggccccc tagcgaagta ctcacagctg ttggcctgat atgcgcattg 4261 gctggagggt tcgccaaggc agatatagag atggctgggc ccatggccgc ggtcggtctg 4321 ctaattgtca gttacgtggt ctcaggaaag agtgtggaca tgtacattga aagagcaggt 4381 gacatcacat gggaaaaaga tgcggaagtc actggaaaca gtccccggct cgatgtggcg 4441 ctagatgaga gtggtgattt ctccctggtg gaggatgacg gtccccccat gagagagatc 4501 atactcaagg tggtcctgat gaccatctgt ggcatgaacc caatagccat accctttgca 4561 gctggagcgt ggtacgtata cgtgaagact ggaaaaagga gtggtgctct atgggatgtg 4621 cctgctccca aggaagtaaa aaagggggag accacagatg gagtgtacag agtaatgact 4681 cgtagactgc taggttcaac acaagttgga gtgggagtta tgcaagaggg ggtctttcac 4741 actatgtggc acgtcacaaa aggatccgcg ctgagaagcg gtgaagggag acttgatcca 4801 tactggggag atgtcaagca ggatctggtg tcatactgtg gtccatggaa gctagatgcc 4861 gcctgggacg ggcacagcga ggtgcagctc ttggccgtgc cccccggaga gagagcgagg 4921 aacatccaga ctctgcccgg aatatttaag acaaaggatg gggacattgg agcggttgcg 4981 ctggattacc cagcaggaac ttcaggatct ccaatcctag acaagtgtgg gagagtgata 5041 ggactttatg gcaatggggt cgtgatcaaa aatgggagtt atgttagtgc catcacccaa 5101 gggaggaggg aggaagagac tcctgttgag tgcttcgagc cttcgatgct gaagaagaag 5161 cagctaactg tcttagactt gcatcctgga gctgggaaaa ccaggagagt tcttcctgaa 5221 atagtccgtg aagccataaa aacaagactc cgcaccgtga tcttagctcc aaccagggtt 5281 gtcgctgctg aaatggagga ggcccttaga gggcttccag tgcgttatat gacaacagca 5341 gtcaatgtca cccactctgg aacagaaatc gtcgacttaa tgtgccatgc caccttcact 5401 tcacgtctac tacagccaat cagagtcccc aactataatc tgtatattat ggatgaggcc 5461 cacttcacag atccctcaag tatagcagca agaggataca tttcaacaag ggttgagatg 5521 ggcgaggcgg ctgccatctt catgaccgcc acgccaccag gaacccgtga cgcatttccg 5581 gactccaact caccaattat ggacaccgaa gtggaagtcc cagagagagc ctggagctca 5641 ggctttgatt gggtgacgga tcattctgga aaaacagttt ggtttgttcc aagcgtgagg 5701 aacggcaatg agatcgcagc ttgtctgaca aaggctggaa aacgggtcat acagctcagc 5761 agaaagactt ttgagacaga gttccagaaa acaaaacatc aagagtggga ctttgtcgtg 5821 acaactgaca tttcagagat gggcgccaac tttaaagctg accgtgtcat agattccagg 5881 agatgcctaa agccggtcat acttgatggc gagagagtca ttctggctgg acccatgcct 5941 gtcacacatg ccagcgctgc ccagaggagg gggcgcatag gcaggaatcc caacaaacct 6001 ggagatgagt atctgtatgg aggtgggtgc gcagagactg acgaagacca tgcacactgg 6061 cttgaagcaa gaatgctcct tgacaatatt tacctccaag atggcctcat agcctcgctc 6121 tatcgacctg aggccgacaa agtagcagcc attgagggag agttcaagct taggacggag 6181 caaaggaaga cctttgtgga actcatgaaa agaggagatc ttcctgtttg gctggcctat 6241 caggttgcat ctgccggaat aacctacaca gatagaagat ggtgctttga tggcacgacc 6301 aacaacacca taatggaaga cagtgtgccg gcagaggtgt ggaccagaca cggagagaaa 6361 agagtgctca aaccgaggtg gatggacgcc agagtttgtt cagatcatgc ggccctgaag 6421 tcattcaagg agtttgccgc tgggaaaaga ggagcggctt ttggagtgat ggaagccctg 6481 ggaacactgc caggacacat gacagagaga ttccaggaag ccattgacaa cctcgctgtg 6541 ctcatgcggg cagagactgg aagcaggcct tacaaagccg cggcggccca attgccggag 6601 accctagaga ccattatgct tttggggttg ctgggaacag tctcgctggg aatcttcttc 6661 gtcttgatga ggaacaaggg catagggaag atgggctttg gaatggtgac tcttggggcc 6721 agcgcatggc tcatgtggct ctcggaaatt gagccagcca gaattgcatg tgtcctcatt 6781 gttgtgtttc tattgctggt ggtgctcata cctgagccag aaaagcaaag atctccccag 6841 gacaaccaaa tggcaatcat catcatggta gcagtaggtc ttctgggctt gattaccgcc 6901 aatgaactcg gatggttgga gagaacaaag agtgacctaa gccatctaat gggaaggaga 6961 gaggaggggg caaccatagg attctcaatg gacattgacc tgcggccagc ctcagcttgg 7021 gccatctatg ctgccttgac aactttcatt accccagccg tccaacatgc agtgaccact 7081 tcatacaaca actactcctt aatggcgatg gccacgcaag ctggagtgtt gtttggtatg 7141 ggcaaaggga tgccattcta cgcatgggac tttggagtcc cgctgctaat gataggttgc 7201 tactcacaat taacacccct gaccctaata gtggccatca ttttgctcgt ggcgcactac 7261 atgtacttga tcccagggct gcaggcagca gctgcgcgtg ctgcccagaa gagaacggca 7321 gctggcatca tgaagaaccc tgttgtggat ggaatagtgg tgactgacat tgacacaatg 7381 acaattgacc cccaagtgga gaaaaagatg ggacaggtgc tactcatagc agtagccgtc 7441 tccagcgcca tactgtcgcg gaccgcctgg gggtgggggg aggctggggc cctgatcaca 7501 gccgcaactt ccactttgtg ggaaggctct ccgaacaagt actggaactc ctctacagcc 7561 acttcactgt gtaacatttt taggggaagt tacttggctg gagcttctct aatctacaca 7621 gtaacaagaa acgctggctt ggtcaagaga cgtgggggtg gaacaggaga gaccctggga 7681 gagaaatgga aggcccgctt gaaccagatg tcggccctgg agttctactc ctacaaaaag 7741 tcaggcatca ccgaggtgtg cagagaagag gcccgccgcg ccctcaagga cggtgtggca 7801 acgggaggcc atgctgtgtc ccgaggaagt gcaaagctga gatggttggt ggagcgggga 7861 tacctgcagc cctatggaaa ggtcattgat cttggatgtg gcagaggggg ctggagttac 7921 tacgccgcca ccatccgcaa agttcaagaa gtgaaaggat acacaaaagg aggccctggt 7981 catgaagaac ccgtgttggt gcaaagctat gggtggaaca tagtccgtct taagagtggg 8041 gtggacgtct ttcatatggc ggctgagccg tgtgacacgt tgctgtgtga cataggtgag 8101 tcatcatcta gtcctgaagt ggaagaagca cggacgctca gagtcctctc catggtgggg 8161 gattggcttg aaaaaagacc aggagccttt tgtataaagg tgttgtgccc atacaccagc 8221 actatgatgg aaaccctgga gcgactgcag cgtaggtatg ggggaggact ggtcagagtg 8281 ccactctccc gcaactctac acatgagatg tattgggtct ctggagcgaa aagcaacacc 8341 ataaaaagtg tgtccaccac gagccagctc ctcttggggc gcatggacgg gcctaggagg 8401 ccagtgaaat atgaggagga tgtggatctc ggctctggca cgcgggctgt ggtaagctgc 8461 gctgaagctc ccaacatgaa gatcattggt aaccgcattg aaaggatccg cagtgagcac 8521 gcggaaacgt ggttctttga cgagaaccac ccatatagga catgggctta ccatggaagc 8581 tatgaggccc ccacacaagg gtcagcgtcc tctctaataa acggggttgt caggctcctg 8641 tcaaaaccct gggatgtggt gactggagtc acaggaatag ccatgaccga caccacaccg 8701 tatggtcagc aaagagtttt caaggaaaaa gtggacacta gggtgccaga cccccaagaa 8761 ggcactcgtc aggttatgag catggtctct tcctggttgt ggaaagagct aggcaaacac 8821 aaacggccac gagtctgtac caaagaagag ttcatcaaca aggttcgtag caatgcagca 8881 ttaggggcaa tatttgaaga ggaaaaagag tggaagactg cagtggaagc tgtgaacgat 8941 ccaaggttct gggctctagt ggataaggaa agagagcacc acctgagagg agagtgccag 9001 agttgtgtgt acaacatgat gggaaaaaga gaaaagaaac aaggggaatt tggaaaggcc 9061 aagggcagcc gcgccatctg gtatatgtgg ctaggggcta gatttctaga gttcgaagcc 9121 cttggattct tgaacgagga tcactggatg gggagagaga actcaggagg tggtgttgaa 9181 gggctgggat tacaaagact cggatatgtc ctagaagaga tgagtcgtat accaggagga 9241 aggatgtatg cagatgacac tgctggctgg gacacccgca tcagcaggtt tgatctggag 9301 aatgaagctc taatcaccaa ccaaatggaa aaagggcaca gggccttggc attggccata 9361 atcaagtaca cataccaaaa caaagtggta aaggtcctta gaccagctga aaaagggaaa 9421 acagttatgg acattatttc gagacaagac caaaggggga gcggacaagt tgtcacttac 9481 gctcttaaca catttaccaa cctagtggtg caactcattc ggaatatgga ggctgaggaa 9541 gttctagaga tgcaagactt gtggctgctg cggaggtcag agaaagtgac caactggttg 9601 cagagcaacg gatgggatag gctcaaacga atggcagtca gtggagatga ttgcgttgtg 9661 aagccaattg atgataggtt tgcacatgcc ctcaggttct tgaatgatat gggaaaagtt 9721 aggaaggaca cacaagagtg gaaaccctca actggatggg acaactggga agaagttccg 9781 ttttgctccc accacttcaa caagctccat ctcaaggacg ggaggtccat tgtggttccc 9841 tgccgccacc aagatgaact gattggccgg gcccgcgtct ctccaggggc gggatggagc 9901 atccgggaga ctgcttgcct agcaaaatca tatgcgcaaa tgtggcagct cctttatttc 9961 cacagaaggg acctccgact gatggccaat gccatttgtt catctgtgcc agttgactgg 10021 gttccaactg ggagaactac ctggtcaatc catggaaagg gagaatggat gaccactgaa 10081 gacatgcttg tggtgtggaa cagagtgtgg attgaggaga acgaccacat ggaagacaag 10141 accccagtta cgaaatggac agacatcccc tatttgggaa aaagggaaga cttgtggtgt 10201 ggatctctca tagggcacag accgcgcacc acctgggctg agaacattaa aaacacagtc 10261 aacatggtgc gcaggatcat aggtgatgaa gaaaagtaca tggactacct atccacccaa 10321 gttcgctact tgggtgaaga agggtctaca cctggagtgc tgtaagcacc agtcttaatg 10381 ttgtcaggcc tgctagtcag ccacagcttg gggaaagctg tgcagcctgt gaccccccag 10441 gagaagctgg gaaaccaagc ctatagtcag gccgagaacg ccatggcacg gaagaagcca 10501 tgctgcctgt gagcccctca gaggacactg agtcaaaaaa ccccacgcgc ttggaggcgc 10561 aggatgggaa aagaaggtgg cgaccttccc cacccttcaa tctggggcct gaactggaga 10621 tcagctgtgg atctccagaa gagggactag tggttagagg ag Link to comment Share on other sites More sharing options...
niman Posted January 28, 2016 Author Report Share Posted January 28, 2016 Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome190681906899%0.099%KU321639.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds190031900399%0.099%KJ776791.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds185831858397%0.099%KU312312.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds177571775796%0.098%JN860885.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds177031770395%0.099%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds175941759496%0.098%EU545988.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds164661646696%0.096%HQ234499.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID1392513925100%0.089%LC002520.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds1392313923100%0.089%KF268949.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds1392313923100%0.089%KF268948.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds1391613916100%0.089%KF268950.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome1386713867100%0.089%AY632535.2Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds133291332996%0.089%KF383115.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds133291332996%0.089%HQ234498.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds133081330896%0.089%KF383119.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds132841328496%0.089%DQ859059.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds132701327096%0.089%KF383116.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds132631326396%0.089%HQ234501.1Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds132001320096%0.088%KF383117.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds131831318396%0.088%HQ234500.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds129941306296%0.088%KF383118.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds129091290993%0.089%KF383121.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence108861088693%0.084%KF383120.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds5077507726%0.099%KU312314.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds5052505226%0.099%KU312313.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds3452345218%0.099%KU312315.1Select seq gb|DQ859064.1|Spondweni virus strain SM-6 V-1 polyprotein gene, complete cds2856419191%0.071%DQ859064.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds2686268614%0.099%KJ634273.1Select seq gb|KM078936.1|Zika virus strain CHI1410214 NS5 protein gene, partial cds174617469%0.099%KM078936.1Select seq gb|KM078961.1|Zika virus strain CHI2612114 NS5 protein gene, partial cds174517459%0.099%KM078961.1Select seq gb|KM078930.1|Zika virus strain CHI2283714 NS5 protein gene, partial cds174317439%0.099%KM078930.1Select seq gb|KM078971.1|Zika virus strain CHI2613014 NS5 protein gene, partial cds173917399%0.099%KM078971.1Select seq gb|KM078970.1|Zika virus strain CHI2490414 NS5 protein gene, partial cds173917399%0.099%KM078970.1Select seq gb|KM078933.1|Zika virus strain CHI1058514 NS5 protein gene, partial cds173917399%0.099%KM078933.1Select seq gb|KM078929.1|Zika virus strain CHI1805214 NS5 protein gene, partial cds173717379%0.099%KM078929.1Select seq gb|KJ873160.1|Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds159715978%0.099%KJ873160.1Select seq gb|KJ873161.1|Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds141514157%0.099%KJ873161.1Select seq gb|KM851039.1|Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds138213827%0.099%KM851039.1Select seq gb|KM851038.1|Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds134613467%0.098%KM851038.1 Link to comment Share on other sites More sharing options...
niman Posted January 28, 2016 Author Report Share Posted January 28, 2016 LOCUS KU365778 10727 bp RNA linear VRL 26-JAN-2016 DEFINITION Zika virus strain BeH819015 polyprotein gene, complete cds. ACCESSION KU365778 VERSION KU365778.1 GI:975885966 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus; Spondweni virus group. REFERENCE 1 (bases 1 to 10727) AUTHORS Azevedo,R.S.S., Cruz,A.C.R., Nunes,B.T.D., Quieroz,A.L.N., Oliveira,R.S., Medeiros,D.B.A., Rodrigues,D.S.G., Silva,E.V.P., Pantoja,J.A.S., Massafra,J.M.V., Santos,M., Silva,S.P., Lemos,P.S., Santos,A.C.M., Vasconcelos,H.B., Lima,J.A., Rodrigues,S.G., Tesh,R.B., Nunes,M.R.T. and Vasconcelos,P.F.C. TITLE Genome sequences of four Zika virus isolates from Brazil JOURNAL Unpublished REFERENCE 2 (bases 1 to 10727) AUTHORS Azevedo,R.S.S., Cruz,A.C.R., Nunes,B.T.D., Quieroz,A.L.N., Oliveira,R.S., Medeiros,D.B.A., Rodrigues,D.S.G., Silva,E.V.P., Pantoja,J.A.S., Massafra,J.M.V., Santos,M., Silva,S.P., Lemos,P.S., Santos,A.C.M., Vasconcelos,H.B., Lima,J.A., Rodrigues,S.G., Tesh,R.B., Nunes,M.R.T. and Vasconcelos,P.F.C. TITLE Direct Submission JOURNAL Submitted (30-DEC-2015) Center for Technological Innovation, Evandro Chagas Institute, BR 316, Km 07, s/n, Ananindeua, Para 67030-000, Brazil COMMENT EMAIL: [email protected] ##Assembly-Data-START## Assembly method: Mira 4.0 and Geneious 7.0 Sequencing Technology: Ion and 454 ##Assembly-Data-END##. FEATURES Location/Qualifiers source 1..10727 /organism="Zika virus" /mol_type="genomic RNA" /strain="BeH819015" /host="Homo sapiens" /db_xref="taxon:64320" /country="Brazil" /collection_date="2015" CDS 95..10366 /codon_start=1 /product="polyprotein" /protein_id="AMA12085.1" /db_xref="GI:975885967" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSMVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST QVRYLGEEGSTPGVL" ORIGIN 1 tgtgaatcag actgcgacag ttcgagtttg aagcgaaagc tagcaacagt atcaacaggt 61 tttattttgg atttggaaac gagagtttct ggtcatgaaa aacccaaaaa agaaatccgg 121 aggattccgg attgtcaata tgctaaaacg cggagtagcc cgtgtgagcc cctttggggg 181 cttgaagagg ctgccagccg gacttctgct gggtcatggg cccatcagga tggtcttggc 241 gattctagcc tttttgagat tcacggcaat caagccatca ctgggtctca tcaatagatg 301 gggttcagtt gggaaaaaag aggctatgga aataataaag aagttcaaga aagatctggc 361 tgccatgctg agaataatca atgctaggaa ggagaagaag agacgaggcg cagatactag 421 tgtcggaatt gttggcctcc tgctgaccac agctatggca gcggaggtca ctagacgtgg 481 gagtgcatac tatatgtact tggacagaaa cgatgctggg gaggccatat cttttccaac 541 cacattgggg atgaataagt gttatataca gatcatggat cttggacaca tgtgtgatgc 601 caccatgagc tatgaatgcc ctatgctgga tgagggggtg gaaccagatg acgtcgattg 661 ttggtgcaac acgacgtcaa cttgggttgt gtacggaacc tgccatcaca aaaaaggtga 721 agcacggaga tctagaagag ctgtgacgct cccctcccat tccactagga agctgcaaac 781 gcggtcgcaa acctggttgg aatcaagaga atacacaaag cacttgatta gagtcgaaaa 841 ttggatattc aggaaccctg gcttcgcgtt agcagcagct gccatcgctt ggcttttggg 901 aagctcaacg agccaaaaag tcatatactt ggtcatgata ctgctgattg ccccggcata 961 cagcatcagg tgcataggag tcagcaatag ggactttgtg gaaggtatgt caggtgggac 1021 ttgggttgat gttgtcttgg aacatggagg ttgtgtcacc gtaatggcac aggacaaacc 1081 gactgtcgac atagagctgg ttacaacaac agtcagcaac atggcggagg taagatccta 1141 ctgctatgag gcatcaatat cagacatggc ttcggacagc cgctgcccaa cacaaggtga 1201 agcctacctt gacaagcaat cagacactca atatgtctgc aaaagaacgt tagtggacag 1261 aggctgggga aatggatgtg gactttttgg caaagggagc ctggtgacat gcgctaagtt 1321 tgcatgctcc aagaaaatga ccgggaagag catccagcca gagaatctgg agtaccggat 1381 aatgctgtca gttcatggct cccagcacag tgggatgatc gttaatgaca caggacatga 1441 aactgatgag aatagagcga aagttgagat aacgcccaat tcaccaagag ccgaagccac 1501 cctggggggt tttggaagcc taggacttga ttgtgaaccg aggacaggcc ttgacttttc 1561 agatttgtat tacttgacta tgaataacaa gcactggttg gttcacaagg agtggttcca 1621 cgacattcca ttaccttggc acgctggggc agacaccgga actccacact ggaacaacaa 1681 agaagcactg gtagagttca aggacgcaca tgccaaaagg caaactgtcg tggttctagg 1741 gagtcaagaa ggagcagttc acacggccct tgctggagct ctggaggctg agatggatgg 1801 tgcaaaggga aggctgtcct ctggccactt gaaatgtcgc ctgaaaatgg ataaacttag 1861 attgaagggc gtgtcatact ccttgtgtac tgcagcgttc acattcacca agatcccggc 1921 tgaaacactg cacgggacag tcacagtgga ggtacagtac gcagggacag atggaccttg 1981 caaggttcca gctcagatgg cggtggacat gcaaactctg accccagttg ggaggttgat 2041 aaccgctaac cccgtaatca ctgaaagcac tgagaactct aagatgatgc tggaacttga 2101 tccaccattt ggggactctt acattgtcat aggagtcggg gagaagaaga tcacccacca 2161 ctggcacagg agtggcagca ccattggaaa agcatttgaa gccactgtga gaggtgccaa 2221 gagaatggca gtcttgggag acacagcctg ggactttgga tcagttggag gcgctctcaa 2281 ctcattgggc aagggcatcc atcaaatttt tggagcagct ttcaaatcat tgtttggagg 2341 aatgtcctgg ttctcacaaa ttctcattgg aacgttgctg atgtggttgg gtctgaacac 2401 aaagaatgga tctatttccc ttatgtgctt ggccttaggg ggggtgttga tcttcttatc 2461 cacagccgtc tctgctgatg tggggtgctc ggtggacttc tcaaagaagg agacgagatg 2521 cggtacaggg gtgttcgtct ataacgacgt tgaagcctgg agggacaggt acaagtacca 2581 tcctgactcc ccccgtagat tggcagcagc agtcaagcaa gcctgggaag atggtatctg 2641 cgggatctcc tctgtttcaa gaatggaaaa catcatgtgg agatcagtag aaggggagct 2701 caacgcaatc ctggaagaga atggagttca actgacggtc gttgtgggat ctgtaaaaaa 2761 ccccatgtgg agaggtccac agagattgcc cgtgcctgtg aacgagctgc cccacggctg 2821 gaaggcttgg gggaaatcgt acttcgtcag agcagcaaag acaaataaca gctttgtcgt 2881 ggatggtgac acactgaagg aatgcccact caaacataga gcatggaaca gctttcttgt 2941 ggaggatcat gggttcgggg tatttcacac tagtgtctgg ctcaaggtta gagaagatta 3001 ttcattagag tgtgatccag ccgttattgg aacagctgtt aagggaaagg aggctgtaca 3061 cagtgatcta ggctactgga ttgagagtga gaagaatgac acatggaggc tgaagagggc 3121 ccatctgatc gagatgaaaa catgtgaatg gccaaagtcc cacacattgt ggacagatgg 3181 aatagaagag agtgatctga tcatacccaa gtctttagct gggccactca gccatcacaa 3241 taccagagag ggctacagga cccaaatgaa agggccatgg cacagtgaag agcttgaaat 3301 tcggtttgag gaatgcccag gcactaaggt ccacgtggag gaaacatgtg gaacaagagg 3361 accatctctg agatcaacca ctgcaagcgg aagggtgatc gaggaatggt gctgcaggga 3421 gtgcacaatg cccccactgt cgttccgggc taaagatggc tgttggtatg gaatggagat 3481 aaggcccagg aaagaaccag aaagcaactt agtaaggtca atggtgactg caggatcaac 3541 tgatcacatg gaccacttct cccttggagt gcttgtgatc ctgctcatgg tgcaggaagg 3601 gctgaagaag agaatgacca caaagatcat cataagcaca tcaatggcag tgctggtagc 3661 tatgatcctg ggaggatttt caatgagtga cctggctaag cttgcaattt tgatgggtgc 3721 caccttcgcg gaaatgaaca ctggaggaga tgtagctcat ctggcgctga tagcggcatt 3781 caaagtcaga ccagcgttgc tggtatcttt catcttcaga gctaattgga caccccgtga 3841 aagcatgctg ctggccttgg cctcgtgtct tttgcaaact gcgatctccg ccttggaagg 3901 cgacctgatg gttctcatca atggttttgc tttggcctgg ttggcaatac gagcgatggt 3961 tgttccacgc actgataaca tcaccttggc aatcctggct gctctgacac cactggcccg 4021 gggcacactg cttgtggcgt ggagagcagg ccttgctact tgcggggggt ttatgctcct 4081 ctctctgaag ggaaaaggca gtgtgaagaa gaacttacca tttgtcatgg ccctgggact 4141 aaccgctgtg aggctggtcg accccatcaa cgtggtggga ctgctgttac tcacaaggag 4201 tgggaagcgg agctggcccc ctagcgaagt actcacagct gttggcctga tatgcgcatt 4261 ggctggaggg ttcgccaagg cagatataga gatggctggg cccatggccg cggtcggtct 4321 gctaattgtc agttacgtgg tctcaggaaa gagtgtggac atgtacattg aaagagcagg 4381 tgacatcaca tgggaaaaag atgcggaagt cactggaaac agtccccggc tcgatgtggc 4441 gctagatgag agtggtgatt tctccctggt ggaggatgac ggtcccccca tgagagagat 4501 catactcaag gtggtcctga tgaccatctg tggcatgaat ccaatagcca taccctttgc 4561 agctggagcg tggtacgtat acgtgaagac tggaaaaagg agtggtgctc tatgggatgt 4621 gcctgctccc aaggaagtaa aaaaggggga gaccacagat ggagtgtaca gagtaatgac 4681 tcgtagactg ctaggttcaa cacaagttgg agtgggagtt atgcaagagg gggtctttca 4741 cactatgtgg cacgtcacaa aaggatccgc gctgagaagc ggtgaaggga gacttgatcc 4801 atactgggga gatgtcaagc aggatctggt gtcatactgt ggtccatgga agctagatgc 4861 cgcctgggac gggcacagcg aggtgcagct cttggccgtg ccccccggag agagagcgag 4921 gaacatccag actctgcccg gaatatttaa gacaaaggat ggggacattg gagcggttgc 4981 gctggattac ccagcaggaa cttcaggatc tccaatccta gacaagtgtg ggagagtgat 5041 aggactttat ggcaatgggg tcgtgatcaa aaatgggagt tatgttagtg ccatcaccca 5101 agggaggagg gaagaagaga ctcctgttga gtgcttcgag ccctcgatgc tgaagaagaa 5161 gcagctaact gtcttagact tgcatcctgg agctgggaaa accaggagag ttcttcctga 5221 aatagtccgt gaagccataa aaacaagact ccgtactgtg atcttagctc caaccagggt 5281 tgtcgctgct gaaatggagg aggcccttag agggcttcca gtgcgttata tgacaacagc 5341 agtcaatgtc acccactctg gaacagaaat cgtcgactta atgtgccatg ccaccttcac 5401 ttcacgtcta ctacagccaa tcagagtccc caactataat ctgtatatta tggatgaggc 5461 ccacttcaca gatccctcaa gtatagcagc aagaggatac atttcaacaa gggttgagat 5521 gggcgaggcg gctgccatct tcatgaccgc cacgccacca ggaacccgtg acgcatttcc 5581 ggactccaac tcaccaatta tggacaccga agtggaagtc ccagagagag cctggagctc 5641 aggctttgat tgggtgacgg atcattctgg aaaaacagtt tggtttgttc caagcgtgag 5701 gaacggcaat gagatcgcag cttgtctgac aaaggctgga aaacgggtca tacagctcag 5761 cagaaagact tttgagacag agttccagaa aacaaaacat caagagtggg actttgtcgt 5821 gacaactgac atttcagaga tgggcgccaa ctttaaagct gaccgtgtca tagattccag 5881 gagatgccta aagccggtca tacttgatgg cgagagagtc attctggctg gacccatgcc 5941 tgtcacacat gccagcgctg cccagaggag ggggcgcata ggcaggaatc ccaacaaacc 6001 tggagatgag tatctgtatg gaggtgggtg cgcagagact gacgaagacc atgcacactg 6061 gcttgaagca agaatgctcc ttgacaatat ttacctccaa gatggcctca tagcctcgct 6121 ctatcgacct gaggccgaca aagtagcagc cattgaggga gagttcaagc ttaggacgga 6181 gcaaaggaag acctttgtgg aactcatgaa aagaggagat cttcctgttt ggctggccta 6241 tcaggttgca tctgccggaa taacctacac agatagaaga tggtgctttg atggcacgac 6301 caacaacacc ataatggaag atagtgtgcc ggcagaggtg tggaccagac acggagagaa 6361 aagagtgctc aaaccgaggt ggatggacgc cagagtttgt tcagatcatg cggccctgaa 6421 gtcattcaag gagtttgccg ctgggaaaag aggagcggct tttggagtga tggaagccct 6481 gggaacactg ccaggacaca tgacagagag attccaggaa gccattgaca acctcgctgt 6541 gctcatgcgg gcagagactg gaagcaggcc ttacaaagcc gcggcggccc aattgccgga 6601 gaccctagag accataatgc ttttggggtt gctgggaaca gtctcgctgg gaatcttctt 6661 cgtcttgatg aggaacaagg gcatagggaa gatgggcttt ggaatggtga ctcttggggc 6721 cagcgcatgg ctcatgtggc tctcggaaat tgagccagcc agaattgcat gtgtcctcat 6781 tgttgtgttc ctattgctgg tggtgctcat acctgagcca gaaaagcaaa gatctcccca 6841 ggacaaccaa atggcaatca tcatcatggt agcagtaggt cttctgggct tgattaccgc 6901 caatgaactc ggatggttgg agagaacaaa gagtgaccta agccatctaa tgggaaggag 6961 agaggagggg gcaaccatag gattctcaat ggacattgac ctgcggccag cctcagcttg 7021 ggccatctat gctgccttga caactttcat taccccagcc gtccaacatg cagtgaccac 7081 ctcatacaac aactactcct taatggcgat ggccacgcaa gctggagtgt tgtttggtat 7141 gggcaaaggg atgccattct acgcatggga ctttggagtc ccgctgctaa tgataggttg 7201 ctactcacaa ttaacacccc tgaccctaat agtggccatc attttgctcg tggcgcacta 7261 catgtacttg atcccagggc tgcaggcagc agctgcgcgt gctgcccaga agagaacggc 7321 agctggcatc atgaagaacc ctgttgtgga tggaatagtg gtgactgaca ttgacacaat 7381 gacaattgac ccccaagtgg agaaaaagat gggacaggtg ctactcatag cagtagccgt 7441 ctccagcgcc atactgtcgc ggaccgcctg ggggtggggg gaggctgggg ccctgatcac 7501 agccgcaact tccactttgt gggaaggctc tccgaacaag tactggaact cctctacagc 7561 cacttcactg tgtaacattt ttaggggaag ttacttggct ggagcttctc taatctacac 7621 agtaacaaga aacgctggct tggtcaagag acgtgggggt ggaacaggag agaccctggg 7681 agagaaatgg aaggcccgct tgaaccagat gtcggccctg gagttctact cctacaaaaa 7741 gtcaggcatc accgaggtgt gcagagaaga ggcccgccgc gccctcaagg acggtgtggc 7801 aacgggaggc catgctgtgt cccgaggaag tgcaaagctg agatggttgg tggagcgggg 7861 atacctgcag ccctatggaa aggtcattga tcttggatgt ggcagagggg gctggagtta 7921 ctacgccgcc accatccgca aagttcaaga agtgaaagga tacacaaaag gaggccctgg 7981 tcatgaagaa cccgtgttgg tgcaaagcta tgggtggaac atagtccgtc ttaagagtgg 8041 ggtggacgtc tttcatatgg cggctgagcc gtgtgacacg ctgctgtgtg acataggtga 8101 gtcatcatct agtcctgaag tggaagaagc acggacgctc agagtcctct ccatggtggg 8161 ggattggctt gaaaaaagac caggagcctt ttgtataaaa gtgttgtgcc catacaccag 8221 cactatgatg gaaaccctgg agcgactgca gcgtaggtat gggggaggac tggtcagagt 8281 gccactctcc cgcaactcta cacatgagat gtactgggtc tctggagcga aaagcaacac 8341 cataaaaagt gtgtccacca cgagccagct cctcttgggg cgcatggacg ggcctaggag 8401 gccagtgaaa tatgaggagg atgtgaatct cggctctggc acgcgggctg tggtaagctg 8461 cgctgaagct cccaacatga agatcattgg taaccgcatt gaaaggatcc gcagtgagca 8521 cgcggaaacg tggttctttg acgagaacca cccatatagg acatgggctt accatggaag 8581 ctatgaggcc cccacacaag ggtcagcgtc ctctctaata aacggggttg tcaggctcct 8641 gtcaaaaccc tgggatgtgg tgactggagt cacaggaata gccatgaccg acaccacacc 8701 gtatggtcag caaagagttt tcaaggaaaa agtggacact agggtgccag acccccaaga 8761 aggcactcgt caggttatga gcatggtctc ttcctggttg tggaaagagc taggcaaaca 8821 caaacggcca cgagtctgta ccaaagaaga gttcatcaac aaggttcgta gcaatgcagc 8881 attaggggca atatttgaag aggaaaaaga gtggaagact gcagtggaag ctgtgaacga 8941 tccaaggttc tgggctctag tggacaagga aagagagcac cacctgagag gagagtgcca 9001 gagttgtgtg tataacatga tgggaaaaag agaaaagaaa caaggggaat ttggaaaggc 9061 caagggcagc cgcgccatct ggtatatgtg gctaggggct agatttctag agttcgaagc 9121 ccttggattc ttgaacgagg atcactggat ggggagagag aactcaggag gtggtgttga 9181 agggctggga ttacaaagac tcggatatgt cctagaagag atgagtcgta taccaggagg 9241 aaggatgtat gcagatgaca ctgctggctg ggacacccgc attagcaggt ttgatctgga 9301 gaatgaagct ctaatcacca accaaatgga gaaagggcac agggccttgg cattggccat 9361 aatcaagtac acataccaaa acaaagtggt aaaggtcctt agaccagctg aaaaagggaa 9421 aacagttatg gacattattt cgagacaaga ccaaaggggg agcggacaag ttgtcactta 9481 cgctcttaac acatttacca acctagtggt gcaactcatt cggaatatgg aggctgagga 9541 agttctagag atgcaagact tgtggctgct gcggaggtca gagaaagtga ccaactggtt 9601 gcagagcaac ggatgggata ggctcaaacg aatggcagtc agtggagatg attgcgttgt 9661 gaagccaatt gatgataggt ttgcacatgc cctcaggttc ttgaatgata tgggaaaagt 9721 tagaaaggac acacaagagt ggaaaccctc aactggatgg gacaactggg aagaagttcc 9781 gttttgctcc caccacttca acaagctcca tctcaaggac gggaggtcca ttgtggttcc 9841 ctgccgccac caagatgaac tgattggccg ggcccgcgtc tctccagggg cgggatggag 9901 catccgggag actgcttgcc tagcaaaatc atatgcgcag atgtggcagc tcctttattt 9961 ccacagaagg gacctccgac tgatggccaa tgccatttgt tcatctgtgc cagttgactg 10021 ggttccaact gggagaacta cctggtcaat ccatggaaag ggagaatgga tgaccactga 10081 agacatgctt gtggtgtgga acagagtgtg gattgaggag aacgaccaca tggaagacaa 10141 gaccccagtt acgaaatgga cagacattcc ctatttggga aaaagggaag acttgtggtg 10201 tggatctctc atagggcaca gaccgcgcac cacctgggct gagaacatta aaaacacagt 10261 caacatggtg cgcaggatca taggtgatga agaaaagtac atggactacc tatccaccca 10321 agttcgctac ttgggtgaag aagggtctac acctggagtg ctgtaagcac caatcttaat 10381 gttgtcaggc ctgctagtca gccacagctt ggggaaagct gtgcagcctg tgacccccca 10441 ggagaagctg ggaaaccaag cctatagtca ggccgagaac gccatggcac ggaagaagcc 10501 atgctgcctg tgagcccctc agaggatact gagtcaaaaa accccacgcg cttggaggcg 10561 caggatggga aaagaaggtg gcgaccttcc ccacccttca atctggggcc tgaactggag 10621 atcagctgtg gatccccaga agagggacta gtggttagag gagacccccc ggaaaacgca 10681 aaacagcata ttgacgctgg gaaagaccag agactccatg agtttcc Link to comment Share on other sites More sharing options...
niman Posted January 28, 2016 Author Report Share Posted January 28, 2016 Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome190521905299%0.099%KU321639.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds189851898598%0.099%KJ776791.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds185921859296%0.099%KU312312.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds177391773995%0.098%JN860885.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds176881768894%0.099%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds175851758595%0.098%EU545988.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds164061640695%0.095%HQ234499.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID1401514015100%0.089%LC002520.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds1401314013100%0.089%KF268949.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds1400414004100%0.089%KF268948.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds1399713997100%0.089%KF268950.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome1394813948100%0.089%AY632535.2Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds133081330895%0.089%HQ234498.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds132971329795%0.089%KF383115.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds132861328695%0.089%KF383119.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds132481324895%0.089%KF383116.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds132481324895%0.089%DQ859059.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds132231322395%0.089%HQ234501.1Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds131871318795%0.088%KF383117.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds131471314795%0.088%HQ234500.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds129721303795%0.088%KF383118.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds128821288293%0.089%KF383121.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence108861088693%0.084%KF383120.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds5081508126%0.099%KU312314.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds5056505626%0.099%KU312313.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds3458345817%0.099%KU312315.1Select seq gb|DQ859064.1|Spondweni virus strain SM-6 V-1 polyprotein gene, complete cds2861419391%0.071%DQ859064.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds2691269114%0.099%KJ634273.1Select seq gb|KM078936.1|Zika virus strain CHI1410214 NS5 protein gene, partial cds173717379%0.099%KM078936.1Select seq gb|KM078961.1|Zika virus strain CHI2612114 NS5 protein gene, partial cds173617369%0.099%KM078961.1Select seq gb|KM078930.1|Zika virus strain CHI2283714 NS5 protein gene, partial cds173417349%0.099%KM078930.1Select seq gb|KM078971.1|Zika virus strain CHI2613014 NS5 protein gene, partial cds173017309%0.099%KM078971.1Select seq gb|KM078970.1|Zika virus strain CHI2490414 NS5 protein gene, partial cds173017309%0.099%KM078970.1Select seq gb|KM078933.1|Zika virus strain CHI1058514 NS5 protein gene, partial cds173017309%0.099%KM078933.1Select seq gb|KM078929.1|Zika virus strain CHI1805214 NS5 protein gene, partial cds172817289%0.099%KM078929.1Select seq gb|KJ873160.1|Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds158815888%0.099%KJ873160.1Select seq gb|KJ873161.1|Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds140614067%0.099%KJ873161.1Select seq gb|KM851039.1|Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds137313737%0.099%KM851039.1Select seq gb|KM851038.1|Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds133713377%0.098%KM851038.1 Link to comment Share on other sites More sharing options...
niman Posted January 28, 2016 Author Report Share Posted January 28, 2016 LOCUS KU365779 10662 bp RNA linear VRL 26-JAN-2016 DEFINITION Zika virus strain BeH819966 polyprotein gene, complete cds. ACCESSION KU365779 VERSION KU365779.1 GI:975885969 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus; Spondweni virus group. REFERENCE 1 (bases 1 to 10662) AUTHORS Azevedo,R.S.S., Cruz,A.C.R., Nunes,B.T.D., Quieroz,A.L.N., Oliveira,R.S., Medeiros,D.B.A., Rodrigues,D.S.G., Silva,E.V.P., Pantoja,J.A.S., Massafra,J.M.V., Santos,M., Silva,S.P., Lemos,P.S., Santos,A.C.M., Vasconcelos,H.B., Lima,J.A., Rodrigues,S.G., Tesh,R.B., Nunes,M.R.T. and Vasconcelos,P.F.C. TITLE Genome sequences of four Zika virus isolates from Brazil JOURNAL Unpublished REFERENCE 2 (bases 1 to 10662) AUTHORS Azevedo,R.S.S., Cruz,A.C.R., Nunes,B.T.D., Quieroz,A.L.N., Oliveira,R.S., Medeiros,D.B.A., Rodrigues,D.S.G., Silva,E.V.P., Pantoja,J.A.S., Massafra,J.M.V., Santos,M., Silva,S.P., Lemos,P.S., Santos,A.C.M., Vasconcelos,H.B., Lima,J.A., Rodrigues,S.G., Tesh,R.B., Nunes,M.R.T. and Vasconcelos,P.F.C. TITLE Direct Submission JOURNAL Submitted (30-DEC-2015) Center for Technological Innovation, Evandro Chagas Institute, BR 316, Km 07, s/n, Ananindeua, Para 67030-000, Brazil COMMENT EMAIL: [email protected] ##Assembly-Data-START## Assembly method: Mira 4.0 and Geneious 7.0 Sequencing Technology: Ion and 454 ##Assembly-Data-END##. FEATURES Location/Qualifiers source 1..10662 /organism="Zika virus" /mol_type="genomic RNA" /strain="BeH819966" /host="Homo sapiens" /db_xref="taxon:64320" /country="Brazil" /collection_date="2015" CDS 94..10365 /codon_start=1 /product="polyprotein" /protein_id="AMA12086.1" /db_xref="GI:975885970" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSMVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST QVRYLGEEGSTPGVL" ORIGIN 1 gtgaatcaga ctgcgacagt tcgagtttga agcgaaagct agcaacagta tcaacaggtt 61 ttattttgga tttggaaacg agagtttctg gtcatgaaaa acccaaaaaa gaaatccgga 121 ggattccgga ttgtcaatat gctaaaacgc ggagtagccc gtgtgagccc ctttgggggc 181 ttgaagaggc tgccagccgg acttctgctg ggtcatgggc ccatcaggat ggtcttggcg 241 attctagcct ttttgagatt cacggcaatc aagccatcac tgggtctcat caatagatgg 301 ggttcagtgg ggaaaaaaga ggctatggaa ataataaaga agttcaagaa agatctggct 361 gccatgctga gaataatcaa tgctaggaag gagaagaaga gacgaggcgc agatactagt 421 gtcggaattg ttggcctcct gctgaccaca gctatggcag cggaggtcac tagacgtggg 481 agtgcatact atatgtactt ggacagaaac gatgctgggg aggccatatc ttttccaacc 541 acattgggga tgaataagtg ttatatacag atcatggatc ttggacacat gtgtgatgcc 601 accatgagct atgaatgccc tatgctggat gagggggtgg aaccagatga cgtcgattgt 661 tggtgcaaca cgacgtcaac ttgggttgtg tacggaacct gccatcacaa aaaaggtgaa 721 gcacggagat ctagaagagc tgtgacgctc ccctcccatt ccactaggaa gctgcaaacg 781 cggtcgcaaa cctggttgga atcaagagaa tacacaaagc acttgattag agtcgaaaat 841 tggatattca ggaaccctgg cttcgcgtta gcagcagctg ccatcgcttg gcttttggga 901 agctcaacga gccaaaaagt catatacttg gtcatgatac tgctgattgc cccggcatac 961 agcatcaggt gcataggagt cagcaatagg gactttgtgg aaggtatgtc aggtgggacc 1021 tgggttgatg ttgtcttgga acatggaggt tgtgtcaccg taatggcaca ggacaaaccg 1081 actgtcgaca tagagctggt tacaacaaca gtcagcaaca tggcggaggt aagatcctac 1141 tgctatgagg catcaatatc agacatggct tcggacagcc gctgcccaac acaaggtgaa 1201 gcctaccttg acaagcaatc agacactcaa tatgtctgca aaagaacgtt agtggacaga 1261 ggctggggaa atggatgtgg actttttggc aaagggagcc tggtgacatg cgctaagttt 1321 gcatgctcca agaaaatgac cgggaagagc atccagccag agaatctgga gtaccggata 1381 atgctgtcag ttcatggctc ccagcacagt gggatgattg ttaatgacac aggacatgaa 1441 actgatgaga atagagcgaa agttgagata acgcccaatt caccaagagc cgaagccacc 1501 ctggggggtt ttggaagcct aggacttgat tgtgaaccga ggacaggcct tgacttttca 1561 gatttgtatt acttgactat gaataacaag cactggttgg ttcacaagga gtggttccac 1621 gacattccat taccttggca cgctggggca gacaccggaa ctccacactg gaacaacaaa 1681 gaagcactgg tagagttcaa ggacgcacat gccaaaaggc aaactgtcgt ggttctaggg 1741 agtcaagaag gagcagttca cacggccctt gctggagctc tggaggctga gatggatggt 1801 gcaaagggaa ggctgtcctc tggccacttg aaatgtcgcc tgaaaatgga taaacttaga 1861 ttgaagggcg tgtcatactc cttgtgtact gcagcgttca cattcaccaa gatcccggct 1921 gaaacactgc acgggacagt cacagtggag gtacagtacg cagggacaga tggaccttgc 1981 aaggttccag ctcagatggc ggtggacatg caaactctga ccccagttgg gaggttgata 2041 accgctaacc ccgtaatcac tgaaagcact gagaactcta agatgatgct ggaacttgat 2101 ccaccatttg gggactctta cattgtcata ggagtcgggg agaagaagat cacccaccac 2161 tggcacagga gtggcagcac cattggaaaa gcatttgaag ccactgtgag aggtgccaag 2221 agaatggcag tcttgggaga cacagcctgg gactttggat cagttggagg cgctctcaac 2281 tcattgggca agggcatcca tcaaattttt ggagcagctt tcaaatcatt gtttggagga 2341 atgtcctggt tctcacaaat tctcattgga acgttgctga tgtggttggg tctgaacaca 2401 aagaatggat ctatttccct tatgtgcttg gccttagggg gagtgttgat cttcttatcc 2461 acagccgtct ctgctgatgt ggggtgctcg gtggacttct caaagaagga gacgagatgc 2521 ggtacagggg tgttcgtcta taacgacgtt gaagcctgga gggacaggta caagtaccat 2581 cctgactccc cccgtagatt ggcagcagca gtcaagcaag cctgggaaga tggtatctgc 2641 gggatctcct ctgtttcaag aatggaaaac atcatgtgga gatcagtaga aggggagctc 2701 aacgcaatcc tggaagagaa tggagttcaa ctgacggtcg ttgtgggatc tgtaaaaaac 2761 cccatgtgga gaggtccaca gagattgccc gtgcctgtga acgagctgcc ccacggctgg 2821 aaggcttggg ggaaatcgta cttcgtcaga gcagcaaaga caaataacag ctttgtcgtg 2881 gatggtgaca cactgaagga atgcccactc aaacatagag catggaacag ctttcttgtg 2941 gaggatcatg ggttcggggt atttcacact agtgtctggc tcaaggttag agaagattat 3001 tcattagagt gtgatccagc cgttattgga acagctgtta agggaaagga ggctgtacac 3061 agtgatctag gctactggat tgagagtgag aagaatgaca catggaggct gaagagggcc 3121 catctgatcg agatgaaaac atgtgaatgg ccaaagtccc acacattgtg gacagatgga 3181 atagaagaga gtgatctgat catacccaag tctttagctg ggccactcag ccatcacaat 3241 accagagagg gctacaggac ccaaatgaaa gggccatggc acagtgaaga gcttgaaatt 3301 cggtttgagg aatgcccagg cactaaggtc cacgtggagg aaacatgtgg aacaagagga 3361 ccatctctga gatcaaccac tgcaagcgga agggtgatcg aggaatggtg ctgcagggag 3421 tgcacaatgc ccccactgtc gttccgggct aaagatggct gttggtatgg aatggagata 3481 aggcccagga aagaaccaga aagcaactta gtaaggtcaa tggtgactgc aggatcaact 3541 gatcacatgg accacttctc ccttggagtg cttgtgattc tgctcatggt gcaggaaggg 3601 ctgaagaaga gaatgaccac aaagatcatc ataagcacat caatggcagt gctggtagct 3661 atgatcctgg gaggattttc aatgagtgac ctggctaagc ttgcaatttt gatgggtgcc 3721 accttcgcgg aaatgaacac tggaggagat gtagctcatc tggcgctgat agcggcattc 3781 aaagtcagac cagcgttgct ggtatctttc atcttcagag ctaattggac accccgtgaa 3841 agcatgctgc tggccttggc ctcgtgtctt ttgcaaactg cgatctccgc cttggaaggc 3901 gacctgatgg ttctcatcaa tggttttgct ttggcctggt tggcaatacg agcgatggtt 3961 gttccacgca ctgataacat caccttggca atcctggctg ctctgacacc actggcccgg 4021 ggcacactgc ttgtggcgtg gagagcaggc cttgctactt gcggggggtt tatgctcctc 4081 tctctgaagg gaaaaggcag tgtgaagaag aacttaccat ttgtcatggc cctgggacta 4141 accgctgtga ggctggtcga ccccatcaac gtggtgggac tgctgttgct cacaaggagt 4201 gggaagcgga gctggccccc tagcgaagta ctcacagctg ttggcctgat atgcgcattg 4261 gctggagggt tcgccaaggc agatatagag atggctgggc ccatggccgc ggtcggtctg 4321 ctaattgtca gttacgtggt ctcaggaaag agtgtggaca tgtacattga aagagcaggt 4381 gacatcacat gggaaaaaga tgcggaagtc actggaaaca gtccccggct cgatgtggcg 4441 ctagatgaga gtggtgattt ctccctggtg gaggatgacg gtccccccat gagagagatc 4501 atactcaagg tggtcctgat gaccatctgt ggcatgaacc caatagccat accctttgca 4561 gctggagcgt ggtacgtata cgtgaagact ggaaaaagga gtggtgctct atgggatgtg 4621 cctgctccca aggaagtaaa aaagggggag accacagatg gagtgtacag agtaatgact 4681 cgtagactgc taggttcaac acaagttgga gtgggagtta tgcaagaggg ggtctttcac 4741 actatgtggc acgtcacaaa aggatccgcg ctgagaagcg gtgaagggag acttgatcca 4801 tactggggag atgtcaagca ggatctggtg tcatactgtg gtccatggaa gctagatgcc 4861 gcctgggacg ggcacagcga ggtgcagctc ttggccgtgc cccccggaga gagagcgagg 4921 aacatccaga ctctgcccgg aatatttaag acaaaggatg gggacattgg agcggttgcg 4981 ctggattacc cagcaggaac ttcaggatct ccaatcctag acaagtgtgg gagagtgata 5041 ggactttatg gcaatggggt cgtgatcaaa aatgggagtt atgttagtgc catcacccaa 5101 gggaggaggg aggaagagac tcctgttgag tgcttcgagc cttcgatgct gaagaagaag 5161 cagctaactg tcttagactt gcatcctgga gctgggaaaa ccaggagagt tcttcctgaa 5221 atagtccgtg aagccataaa aacaagactc cgtactgtga tcttagctcc aaccagggtt 5281 gtcgctgctg aaatggagga ggcccttaga gggcttccag tgcgttatat gacaacagca 5341 gtcaatgtca cccactctgg aacagaaatc gtcgacttaa tgtgccatgc caccttcact 5401 tcacgtctac tacagccaat cagagtcccc aactataatc tgtatattat ggatgaggcc 5461 cacttcacag atccctcaag tatagcagca agaggataca tttcaacaag ggttgagatg 5521 ggcgaggcgg ctgccatctt catgaccgcc acgccaccag gaacccgtga cgcatttccg 5581 gactccaact caccaattat ggacaccgaa gtggaagtcc cagagagagc ctggagctca 5641 ggctttgatt gggtgacgga tcattctgga aaaacagttt ggtttgttcc aagcgtgagg 5701 aacggcaatg agatcgcagc ttgtctgaca aaggctggaa aacgggtcat acagctcagc 5761 agaaagactt ttgagacaga gttccagaaa acaaaacatc aagagtggga ctttgtcgtg 5821 acaactgaca tttcagagat gggcgccaac tttaaagctg accgtgtcat agattccagg 5881 agatgcctaa agccggtcat acttgatggc gagagagtca ttctggctgg acccatgcct 5941 gtcacacatg ccagcgctgc ccagaggagg gggcgcatag gcaggaatcc caacaaacct 6001 ggagatgagt atctgtatgg aggtgggtgc gcagagactg acgaagacca tgcacactgg 6061 cttgaagcaa gaatgctcct tgacaatatt tacctccaag atggcctcat agcctcgctc 6121 tatcgacctg aggccgacaa agtagcagcc attgagggag agttcaagct taggacggag 6181 caaaggaaga cctttgtgga actcatgaaa agaggagatc ttcctgtttg gctggcctat 6241 caggttgcat ctgccggaat aacctacaca gatagaagat ggtgctttga tggcacgacc 6301 aacaacacca taatggaaga cagtgtgccg gcagaggtgt ggaccagaca cggagagaaa 6361 agagtgctca aaccgaggtg gatggacgcc agagtttgtt cagatcatgc ggccctgaag 6421 tcattcaagg agtttgccgc tgggaaaaga ggagcggctt ttggagtgat ggaagccctg 6481 ggaacactgc caggacacat gacagagaga ttccaggaag ccattgacaa cctcgctgtg 6541 ctcatgcggg cagagactgg aagcaggcct tacaaagccg cggcggccca attgccggag 6601 accctagaga ccattatgct tttggggttg ctgggaacag tctcgctggg aatcttcttc 6661 gtcttgatga ggaacaaggg catagggaag atgggctttg gaatggtgac tcttggggcc 6721 agcgcatggc tcatgtggct ctcggaaatt gagccagcca gaattgcatg tgtcctcatt 6781 gttgtgtttc tattgctggt ggtgctcata cctgagccag aaaagcaaag atctccccag 6841 gacaaccaaa tggcaatcat catcatggta gcagtaggtc ttctgggctt gattaccgcc 6901 aatgaactcg gatggttgga gagaacaaag agtgacctaa gccatctaat gggaaggaga 6961 gaggaggggg caaccatagg attctcaatg gacattgacc tgcggccagc ctcagcttgg 7021 gccatctatg ctgccttgac aactttcatt accccagccg tccaacatgc agtgaccact 7081 tcatacaaca actactcctt aatggcgatg gccacgcaag ctggagtgtt gtttggtatg 7141 ggcaaaggga tgccattcta cgcatgggac tttggagtcc cgctgctaat gataggttgc 7201 tactcacaat taacacccct gaccctaata gtggccatca ttttgctcgt ggcgcactac 7261 atgtacttga tcccagggct gcaggcagca gctgcgcgtg ctgcccagaa gagaacggca 7321 gctggcatca tgaagaaccc tgttgtggat ggaatagtgg tgactgacat tgacacaatg 7381 acaattgacc cccaagtgga gaaaaagatg ggacaggtgc tactcatagc agtagccgtc 7441 tccagcgcca tactgtcgcg gaccgcctgg gggtgggggg aggctggggc cctgatcaca 7501 gccgcaactt ccactttgtg ggaaggctct ccgaacaagt actggaactc ctctacagcc 7561 acttcactgt gtaacatttt taggggaagt tacttggctg gagcttctct aatctacaca 7621 gtaacaagaa acgctggctt ggtcaagaga cgtgggggtg gaacaggaga gaccctggga 7681 gagaaatgga aggcccgctt gaaccagatg tcggccctgg agttctactc ctacaaaaag 7741 tcaggcatca ccgaggtgtg cagagaagag gcccgccgcg ccctcaagga cggtgtggca 7801 acgggaggcc atgctgtgtc ccgaggaagt gcaaagctga gatggttggt ggagcgggga 7861 tacctgcagc cctatggaaa ggtcattgat cttggatgtg gcagaggggg ctggagttac 7921 tacgccgcca ccatccgcaa agttcaagaa gtgaaaggat acacaaaagg aggccctggt 7981 catgaagaac ccgtgttggt gcaaagctat gggtggaaca tagtccgtct taagagtggg 8041 gtggacgtct ttcatatggc ggctgagccg tgtgacacgt tgctgtgtga cataggtgag 8101 tcatcatcta gtcctgaagt ggaagaagca cggacgctca gagtcctctc catggtgggg 8161 gattggcttg aaaaaagacc aggagccttt tgtataaagg tgttgtgccc atacaccagc 8221 actatgatgg aaaccctgga gcgactgcag cgtaggtatg ggggaggact ggtcagagtg 8281 ccactctccc gcaactctac acatgagatg tattgggtct ctggagcgaa aagcaacacc 8341 ataaaaagtg tgtccaccac gagccagctc ctcttggggc gcatggacgg gcctaggagg 8401 ccagtgaaat atgaggagga tgtgaatctc ggctctggca cgcgggctgt ggtaagctgc 8461 gctgaagctc ccaacatgaa gatcattggt aaccgcattg aaaggatccg cagtgagcac 8521 gcggaaacgt ggttctttga cgagaaccac ccatatagga catgggctta ccatggaagc 8581 tatgaggccc ccacacaagg gtcagcgtcc tctctaataa acggggttgt caggctcctg 8641 tcaaaaccct gggatgtggt gactggagtc acaggaatag ccatgaccga caccacaccg 8701 tatggtcagc aaagagtttt caaggaaaaa gtggacacta gggtgccaga cccccaagaa 8761 ggcactcgtc aggttatgag catggtctct tcctggttgt ggaaagagct aggcaaacac 8821 aaacggccac gagtctgtac caaagaagag ttcatcaaca aggttcgtag caatgcagca 8881 ttaggggcaa tatttgaaga ggaaaaagag tggaagactg cagtggaagc tgtgaacgat 8941 ccaaggttct gggctctagt ggataaggaa agagagcacc acctgagagg agagtgccag 9001 agttgtgtgt acaacatgat gggaaaaaga gaaaagaaac aaggggaatt tggaaaggcc 9061 aagggcagcc gcgccatctg gtatatgtgg ctaggggcta gatttctaga gttcgaagcc 9121 cttggattct tgaacgagga tcactggatg gggagagaga actcaggagg tggtgttgaa 9181 gggctgggat tacaaagact cggatatgtc ctagaagaga tgagtcgtat accaggagga 9241 aggatgtatg cagatgacac tgctggctgg gacacccgca tcagcaggtt tgatctggag 9301 aatgaagctc taatcaccaa ccaaatggaa aaagggcaca gggccttggc attggccata 9361 atcaagtaca cataccaaaa caaagtggta aaggtcctta gaccagctga aaaagggaaa 9421 acagttatgg acattatttc gagacaagac caaaggggga gcggacaagt tgtcacttac 9481 gctcttaaca catttaccaa cctagtggtg caactcattc ggaatatgga ggctgaggaa 9541 gttctagaga tgcaagactt gtggctgctg cggaggtcag agaaagtgac caactggttg 9601 cagagcaacg gatgggatag gctcaaacga atggcagtca gtggagatga ttgcgttgtg 9661 aagccaattg atgataggtt tgcacatgcc ctcaggttct tgaatgatat gggaaaagtt 9721 aggaaggaca cacaagagtg gaaaccctca actggatggg acaactggga agaagttccg 9781 ttttgctccc accacttcaa caagctccat ctcaaggacg ggaggtccat tgtggttccc 9841 tgccgccacc aagatgaact gattggccgg gcccgcgtct ctccaggggc gggatggagc 9901 atccgggaga ctgcttgcct agcaaaatca tatgcgcaaa tgtggcagct cctttatttc 9961 cacagaaggg acctccgact gatggccaat gccatttgtt catctgtgcc agttgactgg 10021 gttccaactg ggagaactac ctggtcaatc catggaaagg gagaatggat gaccactgaa 10081 gacatgcttg tggtgtggaa cagagtgtgg attgaggaga acgaccacat ggaagacaag 10141 accccagtta cgaaatggac agacatcccc tatttgggaa aaagggaaga cttgtggtgt 10201 ggatctctca tagggcacag accgcgcacc acctgggctg agaacattaa aaacacagtc 10261 aacatggtgc gcaggatcat aggtgatgaa gaaaagtaca tggactacct atccacccaa 10321 gttcgctact tgggtgaaga agggtctaca cctggagtgc tgtaagcacc agtcttaatg 10381 ttgtcaggcc tgctagtcag ccacagcttg gggaaagctg tgcagcctgt gaccccccag 10441 gagaagctgg gaaaccaagc ctatagtcag gccgagaacg ccatggcacg gaagaagcca 10501 tgctgcctgt gagcccctca gaggacactg agtcaaaaaa ccccacgcgc ttggaggcgc 10561 aggatgggaa aagaaggtgg cgaccttccc cacccttcaa tctggggcct gaactggaga 10621 tcagctgtgg atctccagaa gagggactag tggttagagg ag Link to comment Share on other sites More sharing options...
niman Posted January 28, 2016 Author Report Share Posted January 28, 2016 (edited) Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome190861908699%0.099%KU321639.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds190211902199%0.099%KJ776791.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds186011860197%0.099%KU312312.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds177661776696%0.098%JN860885.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds177211772195%0.099%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds176121761296%0.098%EU545988.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds164691646996%0.096%HQ234499.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID1393413934100%0.089%LC002520.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds1392813928100%0.089%KF268949.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds1391913919100%0.089%KF268948.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds1391213912100%0.089%KF268950.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome1387613876100%0.089%AY632535.2Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds133391333996%0.089%HQ234498.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds133331333396%0.089%KF383115.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds133171331796%0.089%KF383119.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds132881328896%0.089%DQ859059.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds132751327596%0.089%KF383116.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds132591325996%0.089%HQ234501.1Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds132091320996%0.088%KF383117.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds131891318996%0.088%HQ234500.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds130031307196%0.088%KF383118.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds129181291893%0.089%KF383121.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence108951089593%0.084%KF383120.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds5081508126%0.099%KU312314.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds5056505626%0.099%KU312313.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds3452345218%0.099%KU312315.1Select seq gb|DQ859064.1|Spondweni virus strain SM-6 V-1 polyprotein gene, complete cds2856419791%0.071%DQ859064.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds2686268614%0.099%KJ634273.1Select seq gb|KM078936.1|Zika virus strain CHI1410214 NS5 protein gene, partial cds174617469%0.099%KM078936.1Select seq gb|KM078961.1|Zika virus strain CHI2612114 NS5 protein gene, partial cds174517459%0.099%KM078961.1Select seq gb|KM078930.1|Zika virus strain CHI2283714 NS5 protein gene, partial cds174317439%0.099%KM078930.1Select seq gb|KM078971.1|Zika virus strain CHI2613014 NS5 protein gene, partial cds173917399%0.099%KM078971.1Select seq gb|KM078970.1|Zika virus strain CHI2490414 NS5 protein gene, partial cds173917399%0.099%KM078970.1Select seq gb|KM078933.1|Zika virus strain CHI1058514 NS5 protein gene, partial cds173917399%0.099%KM078933.1Select seq gb|KM078929.1|Zika virus strain CHI1805214 NS5 protein gene, partial cds173717379%0.099%KM078929.1Select seq gb|KJ873160.1|Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds159715978%0.099%KJ873160.1Select seq gb|KJ873161.1|Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds141514157%0.099%KJ873161.1Select seq gb|KM851039.1|Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds138213827%0.099%KM851039.1Select seq gb|KM851038.1|Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds134613467%0.098%KM851038.1 Edited January 28, 2016 by niman Link to comment Share on other sites More sharing options...
niman Posted January 28, 2016 Author Report Share Posted January 28, 2016 LOCUS KU365780 10662 bp RNA linear VRL 26-JAN-2016 DEFINITION Zika virus strain BeH815744 polyprotein gene, complete cds. ACCESSION KU365780 VERSION KU365780.1 GI:975885971 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus; Spondweni virus group. REFERENCE 1 (bases 1 to 10662) AUTHORS Azevedo,R.S.S., Cruz,A.C.R., Nunes,B.T.D., Quieroz,A.L.N., Oliveira,R.S., Medeiros,D.B.A., Rodrigues,D.S.G., Silva,E.V.P., Pantoja,J.A.S., Massafra,J.M.V., Santos,M., Silva,S.P., Lemos,P.S., Santos,A.C.M., Vasconcelos,H.B., Lima,J.A., Rodrigues,S.G., Tesh,R.B., Nunes,M.R.T. and Vasconcelos,P.F.C. TITLE Genome sequences of four Zika virus isolates from Brazil JOURNAL Unpublished REFERENCE 2 (bases 1 to 10662) AUTHORS Azevedo,R.S.S., Cruz,A.C.R., Nunes,B.T.D., Quieroz,A.L.N., Oliveira,R.S., Medeiros,D.B.A., Rodrigues,D.S.G., Silva,E.V.P., Pantoja,J.A.S., Massafra,J.M.V., Santos,M., Silva,S.P., Lemos,P.S., Santos,A.C.M., Vasconcelos,H.B., Lima,J.A., Rodrigues,S.G., Tesh,R.B., Nunes,M.R.T. and Vasconcelos,P.F.C. TITLE Direct Submission JOURNAL Submitted (30-DEC-2015) Center for Technological Innovation, Evandro Chagas Institute, BR 316, Km 07, s/n, Ananindeua, Para 67030-000, Brazil COMMENT EMAIL: [email protected] ##Assembly-Data-START## Assembly method: Mira 4.0 and Geneious 7.0 Sequencing Technology: Ion and 454 ##Assembly-Data-END##. FEATURES Location/Qualifiers source 1..10662 /organism="Zika virus" /mol_type="genomic RNA" /strain="BeH815744" /host="Homo sapiens" /db_xref="taxon:64320" /country="Brazil" /collection_date="2015" CDS 94..10365 /codon_start=1 /product="polyprotein" /protein_id="AMA12087.1" /db_xref="GI:975885972" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSMVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVDLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST QVRYLGEEGSTPGVL" ORIGIN 1 gtgaatcaga ctgcgacagt tcgagtttga agcgaaagct agcaacagta tcaacaggtt 61 ttattttgga tttggaaacg agagtttctg gtcatgaaaa acccaaaaaa gaaatccgga 121 ggattccgga ttgtcaatat gctaaaacgc ggagtagccc gtgtgagccc ctttgggggc 181 ttgaagaggc tgccagccgg acttctgctg ggtcatgggc ccatcaggat ggtcttggcg 241 attctagcct ttttgagatt cacggcaatc aagccatcac tgggtctcat caatagatgg 301 ggttcagtgg ggaaaaaaga ggctatggaa ataataaaga agttcaagaa agatctggct 361 gccatgctga gaataatcaa tgctaggaag gagaagaaga gacgaggcgc agatactagt 421 gtcggaattg ttggcctcct gctgaccaca gctatggcag cggaggtcac tagacgtggg 481 agtgcatact atatgtactt ggacagaaac gatgctgggg aggccatatc ttttccaacc 541 acattgggga tgaataagtg ttatatacag atcatggatc ttggacacat gtgtgatgcc 601 accatgagct atgaatgccc tatgctggat gagggggtgg aaccagatga cgtcgattgt 661 tggtgcaaca cgacgtcaac ttgggttgtg tacggaacct gccatcacaa aaaaggtgaa 721 gcacggagat ctagaagagc tgtgacgctc ccctcccatt ccactaggaa gctgcaaacg 781 cggtcgcaaa cctggttgga atcaagagaa tacacaaagc acttgattag agtcgaaaat 841 tggatattta ggaaccctgg cttcgcgtta gcagcagctg ccatcgcttg gcttttggga 901 agctcaacga gccaaaaagt catatacttg gtcatgatac tgctgattgc cccggcatac 961 agcatcaggt gcataggagt cagcaatagg gactttgtgg aaggtatgtc aggtgggacc 1021 tgggttgatg ttgtcttgga acatggaggt tgtgtcaccg taatggcaca ggacaaaccg 1081 actgtcgaca tagagctggt tacaacaaca gtcagcaaca tggcggaggt aagatcctac 1141 tgctatgagg catcaatatc agacatggct tcggacagcc gctgcccaac acaaggtgaa 1201 gcctaccttg acaagcaatc agacactcaa tatgtctgca aaagaacgtt agtggacaga 1261 ggctggggaa atggatgtgg actttttggc aaagggagcc tggtgacatg cgctaagttt 1321 gcatgctcca agaaaatgac cgggaagagc atccagccag agaatctgga gtaccggata 1381 atgctgtcag ttcatggctc ccagcacagt gggatgattg ttaatgacac aggacatgaa 1441 actgatgaga atagagcgaa agttgagata acgcccaatt caccaagagc cgaagccacc 1501 ctggggggtt ttggaagcct aggacttgat tgtgaaccga ggacaggcct tgacttttca 1561 gatttgtatt acttgactat gaataacaag cactggttgg ttcacaagga gtggttccac 1621 gacattccat taccttggca cgctggggca gacaccggaa ctccacactg gaacaacaaa 1681 gaagcactgg tagagttcaa ggacgcacat gccaaaaggc aaactgtcgt ggttctaggg 1741 agtcaagaag gagcagttca cacggccctt gctggagctc tggaggctga gatggatggt 1801 gcaaagggaa ggctgtcctc tggccacttg aaatgtcgcc tgaaaatgga taaacttaga 1861 ttgaagggcg tgtcatactc cttgtgtact gcagcgttca cattcaccaa gatcccggct 1921 gaaacactgc acgggacagt cacagtggag gtacagtacg cagggacaga tggaccttgc 1981 aaggttccag ctcagatggc ggtggacatg caaactctga ccccagttgg gaggttgata 2041 accgctaacc ccgtaatcac tgaaagcact gagaactcta agatgatgct ggaacttgat 2101 ccaccatttg gggactctta cattgtcata ggagtcgggg agaagaagat cacccaccac 2161 tggcacagga gtggcagcac cattggaaaa gcatttgaag ccactgtgag aggtgccaag 2221 agaatggcag tcttgggaga cacagcctgg gactttggat cagttggagg cgctctcaac 2281 tcattgggca agggcatcca tcaaattttt ggagcagctt tcaaatcatt gtttggagga 2341 atgtcctggt tctcacaaat tctcattgga acgttgctga tgtggttggg tctgaacaca 2401 aagaatggat ctatttccct tatgtgcttg gccttagggg gagtgttgat cttcttatcc 2461 acagccgtct ctgctgatgt ggggtgctcg gtggacttct caaagaagga gacgagatgc 2521 ggtacagggg tgttcgtcta taacgacgtt gaagcctgga gggacaggta caagtaccat 2581 cctgactccc cccgtagatt ggcagcagca gtcaagcaag cctgggaaga tggtatctgc 2641 gggatctcct ctgtttcaag aatggaaaac atcatgtgga gatcagtaga aggggagctc 2701 aacgcaatcc tggaagagaa tggagttcaa ctgacggtcg ttgtgggatc tgtaaaaaac 2761 cccatgtgga gaggtccaca gagattgccc gtgcctgtga acgagctgcc ccacggctgg 2821 aaggcttggg ggaaatcgta cttcgtcaga gcagcaaaga caaataacag ctttgtcgtg 2881 gatggtgaca cactgaagga atgcccactc aaacatagag catggaacag ctttcttgtg 2941 gaggatcatg ggttcggggt atttcacact agtgtctggc tcaaggttag agaagattat 3001 tcattagagt gtgatccagc cgttattgga acagctgtta agggaaagga ggctgtacac 3061 agtgatctag gctactggat tgagagtgag aagaatgaca catggaggct gaagagggcc 3121 catctgatcg agatgaaaac atgtgaatgg ccaaagtccc acacattgtg gacagatgga 3181 atagaagaga gtgatctgat catacccaag tctttagctg ggccactcag ccatcacaat 3241 accagagagg gctacaggac ccaaatgaaa gggccatggc acagtgaaga gcttgaaatt 3301 cggtttgagg aatgcccagg cactaaggtc cacgtggagg aaacatgtgg aacaagagga 3361 ccatctctga gatcaaccac tgcaagcgga agggtgatcg aggaatggtg ctgcagggag 3421 tgcacaatgc ccccactgtc gttccgggct aaagatggct gttggtatgg aatggagata 3481 aggcccagga aagaaccaga aagcaactta gtaaggtcaa tggtgactgc aggatcaact 3541 gatcacatgg accacttctc ccttggagtg cttgtgattc tgctcatggt gcaggaaggg 3601 ctgaagaaga gaatgaccac aaagatcatc ataagcacat caatggcagt gctggtagct 3661 atgatcctgg gaggattttc aatgagtgac ctggctaagc ttgcaatttt gatgggtgcc 3721 accttcgcgg aaatgaacac tggaggagat gtagctcatc tggcgctgat agcggcattc 3781 aaagtcagac cagcgttgct ggtatctttc atcttcagag ctaattggac accccgtgaa 3841 agcatgctgc tggccttggc ctcgtgtctt ttgcaaactg cgatctccgc cttggaaggc 3901 gacctgatgg ttctcatcaa tggttttgct ttggcctggt tggcaatacg agcgatggtt 3961 gttccacgca ctgataacat caccttggca atcctggctg ctctgacacc actggcccgg 4021 ggcacactgc ttgtggcgtg gagagcaggc cttgctactt gcggggggtt tatgctcctc 4081 tctctgaagg gaaaaggcag tgtgaagaag aacttaccat ttgtcatggc cctgggacta 4141 accgctgtga ggctggtcga ccccatcaac gtggtgggac tgctgttgct cacaaggagt 4201 gggaagcgga gctggccccc tagcgaagta ctcacagctg ttggcctgat atgcgcattg 4261 gctggagggt tcgccaaggc agatatagag atggctgggc ccatggccgc ggtcggtctg 4321 ctaattgtca gttacgtggt ctcaggaaag agtgtggaca tgtacattga aagagcaggt 4381 gacatcacat gggaaaaaga tgcggaagtc actggaaaca gtccccggct cgatgtggcg 4441 ctagatgaga gtggtgattt ctccctggtg gaggatgacg gtccccccat gagagagatc 4501 atactcaagg tggtcctgat gaccatctgt ggcatgaacc caatagccat accctttgca 4561 gctggagcgt ggtacgtata cgtgaagact ggaaaaagga gtggtgctct atgggatgtg 4621 cctgctccca aggaagtaaa aaagggggag accacagatg gagtgtacag agtaatgact 4681 cgtagactgc taggttcaac acaagttgga gtgggagtta tgcaagaggg ggtctttcac 4741 actatgtggc acgtcacaaa aggatccgcg ctgagaagcg gtgaagggag acttgatcca 4801 tactggggag atgtcaagca ggatctggtg tcatactgtg gtccatggaa gctagatgcc 4861 gcctgggacg ggcacagcga ggtgcagctc ttggccgtgc cccccggaga gagagcgagg 4921 aacatccaga ctctgcccgg aatatttaag acaaaggatg gggacattgg agcggttgcg 4981 ctggattacc cagcaggaac ttcaggatct ccaatcctag acaagtgtgg gagagtgata 5041 ggactttatg gcaatggggt cgtgatcaaa aatgggagtt atgttagtgc catcacccaa 5101 gggaggaggg aggaagagac tcctgttgag tgcttcgagc cttcgatgct gaagaagaag 5161 cagctaactg tcttagactt gcatcctgga gctgggaaaa ccaggagagt tcttcctgaa 5221 atagtccgtg aagccataaa aacaagactc cgcaccgtga tcttagctcc aaccagggtt 5281 gtcgctgctg aaatggagga ggcccttaga gggcttccag tgcgttatat gacaacagca 5341 gtcaatgtca cccactctgg aacagaaatc gtcgacttaa tgtgccatgc caccttcact 5401 tcacgtctac tacagccaat cagagtcccc aactataatc tgtatattat ggatgaggcc 5461 cacttcacag atccctcaag tatagcagca agaggataca tttcaacaag ggttgagatg 5521 ggcgaggcgg ctgccatctt catgaccgcc acgccaccag gaacccgtga cgcatttccg 5581 gactccaact caccaattat ggacaccgaa gtggaagtcc cagagagagc ctggagctca 5641 ggctttgatt gggtgacgga tcattctgga aaaacagttt ggtttgttcc aagcgtgagg 5701 aacggcaatg agatcgcagc ttgtctgaca aaggctggaa aacgggtcat acagctcagc 5761 agaaagactt ttgagacaga gttccagaaa acaaaacatc aagagtggga ctttgtcgtg 5821 acaactgaca tttcagagat gggcgccaac tttaaagctg accgtgtcat agattccagg 5881 agatgcctaa agccggtcat acttgatggc gagagagtca ttctggctgg acccatgcct 5941 gtcacacatg ccagcgctgc ccagaggagg gggcgcatag gcaggaatcc caacaaacct 6001 ggagatgagt atctgtatgg aggtgggtgc gcagagactg acgaagacca tgcacactgg 6061 cttgaagcaa gaatgctcct tgacaatatt tacctccaag atggcctcat agcctcgctc 6121 tatcgacctg aggccgacaa agtagcagcc attgagggag agttcaagct taggacggag 6181 caaaggaaga cctttgtgga actcatgaaa agaggagatc ttcctgtttg gctggcctat 6241 caggttgcat ctgccggaat aacctacaca gatagaagat ggtgctttga tggcacgacc 6301 aacaacacca taatggaaga cagtgtgccg gcagaggtgt ggaccagaca cggagagaaa 6361 agagtgctca aaccgaggtg gatggacgcc agagtttgtt cagatcatgc ggccctgaag 6421 tcattcaagg agtttgccgc tgggaaaaga ggagcggctt ttggagtgat ggaagccctg 6481 ggaacactgc caggacacat gacagagaga ttccaggaag ccattgacaa cctcgctgtg 6541 ctcatgcggg cagagactgg aagcaggcct tacaaagccg cggcggccca attgccggag 6601 accctagaga ccattatgct tttggggttg ctgggaacag tctcgctggg aatcttcttc 6661 gtcttgatga ggaacaaggg catagggaag atgggctttg gaatggtgac tcttggggcc 6721 agcgcatggc tcatgtggct ctcggaaatt gagccagcca gaattgcatg tgtcctcatt 6781 gttgtgtttc tattgctggt ggtgctcata cctgagccag aaaagcaaag atctccccag 6841 gacaaccaaa tggcaatcat catcatggta gcagtaggtc ttctgggctt gattaccgcc 6901 aatgaactcg gatggttgga gagaacaaag agtgacctaa gccatctaat gggaaggaga 6961 gaggaggggg caaccatagg attctcaatg gacattgacc tgcggccagc ctcagcttgg 7021 gccatctatg ctgccttgac aactttcatt accccagccg tccaacatgc agtgaccact 7081 tcatacaaca actactcctt aatggcgatg gccacgcaag ctggagtgtt gtttggtatg 7141 ggcaaaggga tgccattcta cgcatgggac tttggagtcc cgctgctaat gataggttgc 7201 tactcacaat taacacccct gaccctaata gtggccatca ttttgctcgt ggcgcactac 7261 atgtacttga tcccagggct gcaggcagca gctgcgcgtg ctgcccagaa gagaacggca 7321 gctggcatca tgaagaaccc tgttgtggat ggaatagtgg tgactgacat tgacacaatg 7381 acaattgacc cccaagtgga gaaaaagatg ggacaggtgc tactcatagc agtagccgtc 7441 tccagcgcca tactgtcgcg gaccgcctgg gggtgggggg aggctggggc cctgatcaca 7501 gccgcaactt ccactttgtg ggaaggctct ccgaacaagt actggaactc ctctacagcc 7561 acttcactgt gtaacatttt taggggaagt tacttggctg gagcttctct aatctacaca 7621 gtaacaagaa acgctggctt ggtcaagaga cgtgggggtg gaacaggaga gaccctggga 7681 gagaaatgga aggcccgctt gaaccagatg tcggccctgg agttctactc ctacaaaaag 7741 tcaggcatca ccgaggtgtg cagagaagag gcccgccgcg ccctcaagga cggtgtggca 7801 acgggaggcc atgctgtgtc ccgaggaagt gcaaagctga gatggttggt ggagcgggga 7861 tacctgcagc cctatggaaa ggtcattgat cttggatgtg gcagaggggg ctggagttac 7921 tacgccgcca ccatccgcaa agttcaagaa gtgaaaggat acacaaaagg aggccctggt 7981 catgaagaac ccgtgttggt gcaaagctat gggtggaaca tagtccgtct taagagtggg 8041 gtggacgtct ttcatatggc ggctgagccg tgtgacacgt tgctgtgtga cataggtgag 8101 tcatcatcta gtcctgaagt ggaagaagca cggacgctca gagtcctctc catggtgggg 8161 gattggcttg aaaaaagacc aggagccttt tgtataaagg tgttgtgccc atacaccagc 8221 actatgatgg aaaccctgga gcgactgcag cgtaggtatg ggggaggact ggtcagagtg 8281 ccactctccc gcaactctac acatgagatg tattgggtct ctggagcgaa aagcaacacc 8341 ataaaaagtg tgtccaccac gagccagctc ctcttggggc gcatggacgg gcctaggagg 8401 ccagtgaaat atgaggagga tgtggatctc ggctctggca cgcgggctgt ggtaagctgc 8461 gctgaagctc ccaacatgaa gatcattggt aaccgcattg aaaggatccg cagtgagcac 8521 gcggaaacgt ggttctttga cgagaaccac ccatatagga catgggctta ccatggaagc 8581 tatgaggccc ccacacaagg gtcagcgtcc tctctaataa acggggttgt caggctcctg 8641 tcaaaaccct gggatgtggt gactggagtc acaggaatag ccatgaccga caccacaccg 8701 tatggtcagc aaagagtttt caaggaaaaa gtggacacta gggtgccaga cccccaagaa 8761 ggcactcgtc aggttatgag catggtctct tcctggttgt ggaaagagct aggcaaacac 8821 aaacggccac gagtctgtac caaagaagag ttcatcaaca aggttcgtag caatgcagca 8881 ttaggggcaa tatttgaaga ggaaaaagag tggaagactg cagtggaagc tgtgaacgat 8941 ccaaggttct gggctctagt ggataaggaa agagagcacc acctgagagg agagtgccag 9001 agttgtgtgt acaacatgat gggaaaaaga gaaaagaaac aaggggaatt tggaaaggcc 9061 aagggcagcc gcgccatctg gtatatgtgg ctaggggcta gatttctaga gttcgaagcc 9121 cttggattct tgaacgagga tcactggatg gggagagaga actcaggagg tggtgttgaa 9181 gggctgggat tacaaagact cggatatgtc ctagaagaga tgagtcgtat accaggagga 9241 aggatgtatg cagatgacac tgctggctgg gacacccgca tcagcaggtt tgatctggag 9301 aatgaagctc taatcaccaa ccaaatggaa aaagggcaca gggccttggc attggccata 9361 atcaagtaca cataccaaaa caaagtggta aaggtcctta gaccagctga aaaagggaaa 9421 acagttatgg acattatttc gagacaagac caaaggggga gcggacaagt tgtcacttac 9481 gctcttaaca catttaccaa cctagtggtg caactcattc ggaatatgga ggctgaggaa 9541 gttctagaga tgcaagactt gtggctgctg cggaggtcag agaaagtgac caactggttg 9601 cagagcaacg gatgggatag gctcaaacga atggcagtca gtggagatga ttgcgttgtg 9661 aagccaattg atgataggtt tgcacatgcc ctcaggttct tgaatgatat gggaaaagtt 9721 aggaaggaca cacaagagtg gaaaccctca actggatggg acaactggga agaagttccg 9781 ttttgctccc accacttcaa caagctccat ctcaaggacg ggaggtccat tgtggttccc 9841 tgccgccacc aagatgaact gattggccgg gcccgcgtct ctccaggggc gggatggagc 9901 atccgggaga ctgcttgcct agcaaaatca tatgcgcaaa tgtggcagct cctttatttc 9961 cacagaaggg acctccgact gatggccaat gccatttgtt catctgtgcc agttgactgg 10021 gttccaactg ggagaactac ctggtcaatc catggaaagg gagaatggat gaccactgaa 10081 gacatgcttg tggtgtggaa cagagtgtgg attgaggaga acgaccacat ggaagacaag 10141 accccagtta cgaaatggac agacattccc tatttgggaa aaagggaaga cttgtggtgt 10201 ggatctctca tagggcacag accgcgcacc acctgggctg agaacattaa aaacacagtc 10261 aacatggtgc gcaggatcat aggtgatgaa gaaaagtaca tggactacct atccacccaa 10321 gttcgctact tgggtgaaga agggtctaca cctggagtgc tgtaagcacc aatcttaatg 10381 ttgtcaggcc tgctagtcag ccacagcttg gggaaagctg tgcagcctgt gaccccccag 10441 gagaagctgg gaaaccaagc ctatagtcag gccgagaacg ccatggcacg gaagaagcca 10501 tgctgcctgt gagcccctca gaggacactg agtcaaaaaa ccccacgcgc ttggaggcgc 10561 aggatgggaa aagaaggtgg cgaccttccc cacccttcaa tctggggcct gaactggaga 10621 tcagctgtgg atctccagaa gagggactag tggttagagg ag Link to comment Share on other sites More sharing options...
niman Posted January 28, 2016 Author Report Share Posted January 28, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome190771907799%0.099%KU321639.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds190121901299%0.099%KJ776791.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds185921859297%0.099%KU312312.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds177621776296%0.098%JN860885.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds177061770695%0.099%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds175981759896%0.098%EU545988.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds164691646996%0.096%HQ234499.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID1393413934100%0.089%LC002520.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds1392313923100%0.089%KF268949.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds1392313923100%0.089%KF268948.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds1391613916100%0.089%KF268950.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome1387613876100%0.089%AY632535.2Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds133351333596%0.089%HQ234498.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds133331333396%0.089%KF383115.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds133131331396%0.089%KF383119.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds132881328896%0.089%DQ859059.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds132751327596%0.089%KF383116.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds132681326896%0.089%HQ234501.1Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds132051320596%0.088%KF383117.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds131891318996%0.088%HQ234500.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds129991306796%0.088%KF383118.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds129091290993%0.089%KF383121.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence108861088693%0.084%KF383120.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds5077507726%0.099%KU312314.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds5052505226%0.099%KU312313.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds3452345218%0.099%KU312315.1Select seq gb|DQ859064.1|Spondweni virus strain SM-6 V-1 polyprotein gene, complete cds2861419791%0.071%DQ859064.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds2686268614%0.099%KJ634273.1Select seq gb|KM078936.1|Zika virus strain CHI1410214 NS5 protein gene, partial cds174617469%0.099%KM078936.1Select seq gb|KM078961.1|Zika virus strain CHI2612114 NS5 protein gene, partial cds174517459%0.099%KM078961.1Select seq gb|KM078930.1|Zika virus strain CHI2283714 NS5 protein gene, partial cds174317439%0.099%KM078930.1Select seq gb|KM078971.1|Zika virus strain CHI2613014 NS5 protein gene, partial cds173917399%0.099%KM078971.1Select seq gb|KM078970.1|Zika virus strain CHI2490414 NS5 protein gene, partial cds173917399%0.099%KM078970.1Select seq gb|KM078933.1|Zika virus strain CHI1058514 NS5 protein gene, partial cds173917399%0.099%KM078933.1Select seq gb|KM078929.1|Zika virus strain CHI1805214 NS5 protein gene, partial cds173717379%0.099%KM078929.1Select seq gb|KJ873160.1|Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds159715978%0.099%KJ873160.1Select seq gb|KJ873161.1|Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds141514157%0.099%KJ873161.1Select seq gb|KM851039.1|Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds138213827%0.099%KM851039.1Select seq gb|KM851038.1|Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds134613467%0.098%KM851038.1Select seq gb|AF013415.1|Zika virus strain MR-766 NS5 protein (NS5) gene, partial cds130613069%0.088%AF013415.1Select seq gb|KT200609.1|Zika virus isolate BR/949/15 NS5 gene, partial cds123612366%0.099%KT200609.1 Link to comment Share on other sites More sharing options...
niman Posted February 4, 2016 Author Report Share Posted February 4, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds1922819228100%0.0100%KU365777.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds1921919219100%0.099%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds1921019210100%0.099%KU365779.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds1909319093100%0.099%KU365778.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome190681906899%0.099%KU321639.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds190031900399%0.099%KJ776791.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds185831858397%0.099%KU312312.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds177571775796%0.098%JN860885.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds177031770395%0.099%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds175941759496%0.098%EU545988.1 Link to comment Share on other sites More sharing options...
niman Posted February 4, 2016 Author Report Share Posted February 4, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds1922819228100%0.0100%KU365780.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds1921919219100%0.099%KU365777.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds1920119201100%0.099%KU365779.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds1910219102100%0.099%KU365778.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome190771907799%0.099%KU321639.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds190121901299%0.099%KJ776791.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds185921859297%0.099%KU312312.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds177621776296%0.098%JN860885.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds177061770695%0.099%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds175981759896%0.098%EU545988.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds164691646996%0.096%HQ234499.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID1393413934100%0.089%LC002520.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds1392313923100%0.089%KF268949.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds1392313923100%0.089%KF268948.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds1391613916100%0.089%KF268950.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome1387613876100%0.089%AY632535.2Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds133351333596%0.089%HQ234498.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds133331333396%0.089%KF383115.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds133131331396%0.089%KF383119.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds132881328896%0.089%DQ859059.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds132751327596%0.089%KF383116.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds132681326896%0.089%HQ234501.1Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds132051320596%0.088%KF383117.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds131891318996%0.088%HQ234500.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds129991306796%0.088%KF383118.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds129091290993%0.089%KF383121.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence108861088693%0.084%KF383120.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds5077507726%0.099%KU312314.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds5052505226%0.099%KU312313.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds3452345218%0.099%KU312315.1Select seq gb|DQ859064.1|Spondweni virus strain SM-6 V-1 polyprotein gene, complete cds2861419791%0.071%DQ859064.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds2686268614%0.099%KJ634273.1Select seq gb|KM078936.1|Zika virus strain CHI1410214 NS5 protein gene, partial cds174617469%0.099%KM078936.1Select seq gb|KM078961.1|Zika virus strain CHI2612114 NS5 protein gene, partial cds174517459%0.099%KM078961.1Select seq gb|KM078930.1|Zika virus strain CHI2283714 NS5 protein gene, partial cds174317439%0.099%KM078930.1Select seq gb|KM078971.1|Zika virus strain CHI2613014 NS5 protein gene, partial cds173917399%0.099%KM078971.1Select seq gb|KM078970.1|Zika virus strain CHI2490414 NS5 protein gene, partial cds173917399%0.099%KM078970.1Select seq gb|KM078933.1|Zika virus strain CHI1058514 NS5 protein gene, partial cds173917399%0.099%KM078933.1Select seq gb|KM078929.1|Zika virus strain CHI1805214 NS5 protein gene, partial cds173717379%0.099%KM078929.1Select seq gb|KJ873160.1|Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds159715978%0.099%KJ873160.1Select seq gb|KJ873161.1|Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds141514157%0.099%KJ873161.1Select seq gb|KM851039.1|Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds138213827%0.099%KM851039.1Select seq gb|KM851038.1|Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds134613467%0.098%KM851038.1 Link to comment Share on other sites More sharing options...
niman Posted February 4, 2016 Author Report Share Posted February 4, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds1922819228100%0.0100%KU365779.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds1921019210100%0.099%KU365777.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds1920119201100%0.099%KU365780.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds1911119111100%0.099%KU365778.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome190861908699%0.099%KU321639.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds190211902199%0.099%KJ776791.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds186011860197%0.099%KU312312.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds177661776696%0.098%JN860885.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds177211772195%0.099%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds176121761296%0.098%EU545988.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds164691646996%0.096%HQ234499.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID1393413934100%0.089%LC002520.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds1392813928100%0.089%KF268949.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds1391913919100%0.089%KF268948.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds1391213912100%0.089%KF268950.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome1387613876100%0.089%AY632535.2Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds133391333996%0.089%HQ234498.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds133331333396%0.089%KF383115.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds133171331796%0.089%KF383119.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds132881328896%0.089%DQ859059.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds132751327596%0.089%KF383116.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds132591325996%0.089%HQ234501.1Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds132091320996%0.088%KF383117.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds131891318996%0.088%HQ234500.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds130031307196%0.088%KF383118.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds129181291893%0.089%KF383121.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence108951089593%0.084%KF383120.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds5081508126%0.099%KU312314.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds5056505626%0.099%KU312313.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds3452345218%0.099%KU312315.1Select seq gb|DQ859064.1|Spondweni virus strain SM-6 V-1 polyprotein gene, complete cds2856419791%0.071%DQ859064.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds2686268614%0.099%KJ634273.1Select seq gb|KM078936.1|Zika virus strain CHI1410214 NS5 protein gene, partial cds174617469%0.099%KM078936.1Select seq gb|KM078961.1|Zika virus strain CHI2612114 NS5 protein gene, partial cds174517459%0.099%KM078961.1Select seq gb|KM078930.1|Zika virus strain CHI2283714 NS5 protein gene, partial cds174317439%0.099%KM078930.1Select seq gb|KM078971.1|Zika virus strain CHI2613014 NS5 protein gene, partial cds173917399%0.099%KM078971.1Select seq gb|KM078970.1|Zika virus strain CHI2490414 NS5 protein gene, partial cds173917399%0.099%KM078970.1Select seq gb|KM078933.1|Zika virus strain CHI1058514 NS5 protein gene, partial cds173917399%0.099%KM078933.1Select seq gb|KM078929.1|Zika virus strain CHI1805214 NS5 protein gene, partial cds173717379%0.099%KM078929.1Select seq gb|KJ873160.1|Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds159715978%0.099%KJ873160.1Select seq gb|KJ873161.1|Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds141514157%0.099%KJ873161.1Select seq gb|KM851039.1|Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds138213827%0.099%KM851039.1Select seq gb|KM851038.1|Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds134613467%0.098%KM851038.1 Link to comment Share on other sites More sharing options...
niman Posted February 4, 2016 Author Report Share Posted February 4, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds1934619346100%0.0100%KU365778.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds191111911199%0.099%KU365779.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds191021910299%0.099%KU365780.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds190931909399%0.099%KU365777.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome190521905299%0.099%KU321639.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds189851898598%0.099%KJ776791.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds185921859296%0.099%KU312312.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds177391773995%0.098%JN860885.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds176881768894%0.099%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds175851758595%0.098%EU545988.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds164061640695%0.095%HQ234499.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID1401514015100%0.089%LC002520.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds1401314013100%0.089%KF268949.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds1400414004100%0.089%KF268948.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds1399713997100%0.089%KF268950.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome1394813948100%0.089%AY632535.2Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds133081330895%0.089%HQ234498.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds132971329795%0.089%KF383115.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds132861328695%0.089%KF383119.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds132481324895%0.089%KF383116.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds132481324895%0.089%DQ859059.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds132231322395%0.089%HQ234501.1Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds131871318795%0.088%KF383117.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds131471314795%0.088%HQ234500.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds129721303795%0.088%KF383118.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds128821288293%0.089%KF383121.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence108861088693%0.084%KF383120.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds5081508126%0.099%KU312314.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds5056505626%0.099%KU312313.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds3458345817%0.099%KU312315.1Select seq gb|DQ859064.1|Spondweni virus strain SM-6 V-1 polyprotein gene, complete cds2861419391%0.071%DQ859064.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds2691269114%0.099%KJ634273.1Select seq gb|KM078936.1|Zika virus strain CHI1410214 NS5 protein gene, partial cds173717379%0.099%KM078936.1Select seq gb|KM078961.1|Zika virus strain CHI2612114 NS5 protein gene, partial cds173617369%0.099%KM078961.1Select seq gb|KM078930.1|Zika virus strain CHI2283714 NS5 protein gene, partial cds173417349%0.099%KM078930.1Select seq gb|KM078971.1|Zika virus strain CHI2613014 NS5 protein gene, partial cds173017309%0.099%KM078971.1Select seq gb|KM078970.1|Zika virus strain CHI2490414 NS5 protein gene, partial cds173017309%0.099%KM078970.1Select seq gb|KM078933.1|Zika virus strain CHI1058514 NS5 protein gene, partial cds173017309%0.099%KM078933.1Select seq gb|KM078929.1|Zika virus strain CHI1805214 NS5 protein gene, partial cds172817289%0.099%KM078929.1Select seq gb|KJ873160.1|Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds158815888%0.099%KJ873160.1Select seq gb|KJ873161.1|Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds140614067%0.099%KJ873161.1Select seq gb|KM851039.1|Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds137313737%0.099%KM851039.1Select seq gb|KM851038.1|Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds133713377%0.098%KM851038.1 Link to comment Share on other sites More sharing options...
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