niman Posted July 2, 2015 Report Posted July 2, 2015 APHIS releasesĀ A/turkey/Iowa/11762-1/2015 Fujian H5N2 sequences.
niman Posted July 2, 2015 Author Report Posted July 2, 2015 LOCUS KT002473 1744 bp cRNA linear VRL 28-JUN-2015 DEFINITION Influenza A virus (A/turkey/Iowa/11762-1/2015(H5N2)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION KT002473 VERSION KT002473.1 GI:844311911 KEYWORDS . SOURCE Influenza A virus (A/turkey/Iowa/11762-1/2015(H5N2)) ORGANISM Influenza A virus (A/turkey/Iowa/11762-1/2015(H5N2)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1744) AUTHORS Killian,M.L., Gauger,P.C. and Yoon,K.-J. TITLE Direct Submission JOURNAL Submitted (02-JUN-2015) Diagnostic Virology Laboratory, National Veterinary Services Laboratories (NVSL), USDA APHIS VS, 1920 Dayton Avenue, Ames, IA 50010, USA COMMENT GenBank Accession Numbers KT002470-KT002477 represent sequences from the 8 segments of Influenza A virus (A/turkey/Iowa/11762-1/2015(H5N2)). ##Assembly-Data-START## Assembly Method :: SeqMan NGen v. 4.0 Sequencing Technology :: IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1744 /organism="Influenza A virus (A/turkey/Iowa/11762-1/2015(H5N2))" /mol_type="viral cRNA" /strain="A/turkey/Iowa/11762-1/2015" /serotype="H5N2" /isolation_source="OP swab; pooled sample" /host="turkey; commercial" /db_xref="taxon:1662426" /segment="4" /country="USA: Buena Vista County, Iowa" /collection_date="12-Apr-2015" /collected_by="Dr. Terry Olson" /note="NVSL 15-011762; EP1; Eurasian origin (EA-H5N8 clade 2.3.4.4)-North American reassortant" gene 17..1720 /gene="HA" CDS 17..1720 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="AKN08961.1" /db_xref="GI:844311912" /translation="MEKIVLLFAVISLVKSDQICIGYHANNSTKQVDTIMEKNVTVTH AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA NDLCYPGTLNDYEELKHLLSRINHFEKTLIIPRSSWPNHETSLGVSAACPYQGAPSFF RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAAEQTNLYKNPDTYVSVGT STLNQRLVPKIATRSQVNGQSGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG DSTIMKSEMEYGHCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR NSPLRERRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPKYS EEAILKREEISGVKLESIGTYQILSIYSTVASSLALAIIVAGLSLWMCSNGSLQCRIC I" mat_peptide 65..1051 /gene="HA" /product="HA1" mat_peptide 1052..1717 /gene="HA" /product="HA2" ORIGIN 1 ggttcaatct gtcaaaatgg agaaaatagt gcttcttttt gccgtgatta gccttgttaa 61 aagtgatcag atttgcattg gttaccatgc aaacaactca acaaagcagg ttgacacgat 121 aatggagaaa aacgtcactg ttacacatgc ccaagacata ctggaaaaga cacacaacgg 181 gaagctctgc gatcttaatg gagtgaagcc cctgattcta aaggattgta gcgtagctgg 241 gtggctcctt ggaaatccaa tgtgcgacga gttcatcagg gtaccggaat ggtcttacat 301 cgtggagagg gctaacccag ccaacgacct ctgttaccca gggaccctca atgactatga 361 ggaactgaaa cacctattga gcagaataaa tcattttgag aaaactctga tcatccccag 421 gagttcttgg cccaatcatg aaacatcatt aggggtgagc gcagcatgtc cataccaggg 481 agcaccctca tttttcagaa atgtggtatg gctcatcaaa aagaacgatg catacccgac 541 aataaagata agctacaata ataccaatcg ggaagatctt ttgatactgt gggggattca 601 tcattccaac aatgcagcag agcagacaaa tctctataaa aacccagaca cttatgtttc 661 cgttgggaca tcaacattaa accagagatt ggtgccaaaa atagctacta gatcccaagt 721 aaacgggcag agtggaagaa tggatttctt ctggacaatt ttaaaaccga atgatgcaat 781 ccactttgag agtaatggaa atttcattgc tccagaatat gcatacaaaa ttgtcaagaa 841 aggggactca acaattatga aaagtgaaat ggagtatggc cactgcaaca ccaaatgtca 901 aactccaata ggggcgataa actctagcat gccattccac aatatacacc ctctcaccat 961 cggggaatgc cccaaatacg tgaagtcaaa caaattagtc cttgcgactg ggctcagaaa 1021 tagtcctcta agagaaagaa gaagaaaaag aggactattt ggagctatag cagggtttat 1081 agagggagga tggcagggaa tggtagacgg ttggtatggg tatcatcata gcaatgagca 1141 ggggagtggg tacgctgcag acaaagaatc aacccaaaag gcaatagatg gagttaccaa 1201 taaggtcaac tcaatcattg acaaaatgaa cactcaattt gaggccgttg gaagggaatt 1261 taataactta gaaaggagaa tagagaattt aaacaagaaa atggaagacg gattcctaga 1321 tgtctggact tataatgctg aacttttagt tctcatggaa aatgagagaa ctctagattt 1381 ccatgactca aatgtcaaga acctttacga caaagtccga ctacagctta gggataatgc 1441 aaaggagctg ggtaatggtt gtttcgagtt ctatcacaaa tgtgataacg aatgtatgga 1501 gagcgtaaga aatgggacgt atgactaccc taagtattca gaagaagcaa tattaaaaag 1561 agaagaaata agcggagtga aattagaatc aataggaact taccagatac tgtcaattta 1621 ttcaacagtg gcgagttccc tagcactggc aatcatagtg gctggtctat ctttatggat 1681 gtgctctaat gggtcgttac aatgcagaat ttgcatctaa atttgtgagc tcagattgta 1741 atta
niman Posted July 2, 2015 Author Report Posted July 2, 2015 AlignSegment-IDNameScoreE-ValueIdentityEPI620408A/turkey/Iowa/11762-1/2015 (A/H5N2) segment 4 (HA)3147.80.000000e+001704/1704 (100%)EPI590740A/turkey/Minnesota/9845-4/2015 (A/H5N2) segment 4 (HA)3142.30.000000e+001703/1704 (99%)EPI590726A/turkey/Arkansas/7791-1/2015 (A/H5N2) segment 4 (HA)3136.70.000000e+001702/1704 (99%)EPI586550A/chicken/BC/FAV24/2014 (A/H5N2) segment 4 (HA)3136.70.000000e+001702/1704 (99%)EPI586518A/chicken/BC/FAV20/2014 (A/H5N2) segment 4 (HA)3136.70.000000e+001702/1704 (99%)EPI586509A/poultry/BC/FAV19/2014 (A/H5N2) segment 4 (HA)3136.70.000000e+001702/1704 (99%)EPI584079A/turkey/BC/FAV14/2014 (A/H5N2) segment 4 (HA)3136.70.000000e+001702/1704 (99%)EPI573298A/turkey/BC/FAV10/2014 (A/H5N2) segment 4 (HA)3136.70.000000e+001702/1704 (99%)EPI586534A/chicken/BC/FAV22/2014 (A/H5N2) segment 4 (HA)3133.00.000000e+001701/1704 (99%)EPI590733A/chicken/Kansas/8395-3/2015 (A/H5N2) segment 4 (HA)3131.20.000000e+001701/1704 (99%)EPI590719A/turkey/Missouri/7458-1/2015 (A/H5N2) segment 4 (HA)3131.20.000000e+001701/1704 (99%)EPI590685A/turkey/Minnesota/9892-2/2015 (A/H5N2) segment 4 (HA)3131.20.000000e+001701/1704 (99%)EPI586542A/chicken/BC/FAV23/2014 (A/H5N2) segment 4 (HA)3131.20.000000e+001701/1704 (99%)EPI586526A/chicken/BC/FAV21/2014 (A/H5N2) segment 4 (HA)3131.20.000000e+001701/1704 (99%)EPI586493A/poultry/BC/FAV15/2014 (A/H5N2) segment 4 (HA)3131.20.000000e+001701/1704 (99%)EPI585092A/pheasant/Washington/3147-2/2015 (A/H5N2) segment 4 (HA)3131.20.000000e+001701/1704 (99%)EPI576470A/chicken/BC/FAV8/2014 (A/H5N2) segment 4 (HA)3131.20.000000e+001701/1704 (99%)EPI590712A/turkey/Minnesota/7172-1/2015 (A/H5N2) segment 4 (HA)3125.70.000000e+001700/1704 (99%)EPI590699A/chicken/Oregon/A01819044/2015 (A/H5N2) segment 4 (HA)3125.70.000000e+001700/1704 (99%)EPI590692A/chicken/Washington/3490-18/2015 (A/H5N2) segment 4 (HA)3125.70.000000e+001700/1704 (99%)EPI587633A/chicken/Iowa/04-20/2015 (A/H5N2) segment 4 (HA)3125.70.000000e+001700/1704 (99%)EPI586501A/poultry/BC/FAV17/2014 (A/H5N2) segment 4 (HA)3125.70.000000e+001700/1704 (99%)EPI576477A/chicken/BC/FAV9/2014 (A/H5N2) segment 4 (HA)3125.70.000000e+001700/1704 (99%)EPI573281A/turkey/Washington/61-22/2014 (A/H5N2) segment 4 (HA)3125.70.000000e+001700/1704 (99%)EPI569383A/Northern pintail/Washington/40964/2014 (A/H5N2) segment 4 (HA)3125.70.000000e+001700/1704 (99%)EPI586558A/chicken/BC/FAV25/2014 (A/H5N2) segment 4 (HA)3120.10.000000e+001699/1704 (99%)EPI573271A/chicken/Washington/61-9/2014 (A/H5N2) segment 4 (HA)3120.10.000000e+001699/1704 (99%)EPI620422A/chicken/Iowa/13542-2/2015 (A/H5N2) segment 4 (HA)3114.60.000000e+001698/1704 (99%)EPI573276A/domestic duck/Washington/61-16/2014 (A/H5N2) segment 4 (HA)3114.60.000000e+001698/1704 (99%)EPI620436A/turkey/Iowa/14319-1/2015 (A/H5N2) segment 4 (HA)3109.00.000000e+001697/1704 (99%)EPI569390A/gyrfalcon/Washington/41088-6/2014 (A/H5N8) segment 4 (HA)3109.00.000000e+001697/1704 (99%)EPI569376A/guinea fowl/Oregon/41613-1/2014 (A/H5N8) segment 4 (HA)3109.00.000000e+001697/1704 (99%)EPI569372A/chicken/Oregon/41613-2/2014 (A/H5N8) segment 4 (HA)3109.00.000000e+001697/1704 (99%)EPI620457A/chicken/Iowa/14589-1/2015 (A/H5N2) segment 4 (HA)3103.50.000000e+001696/1704 (99%)EPI620450A/chicken/Iowa/14399-4/2015 (A/H5N2) segment 4 (HA)3103.50.000000e+001696/1704 (99%)EPI620443A/chicken/Iowa/14322-6/2015 (A/H5N2) segment 4 (HA)3103.50.000000e+001696/1704 (99%)EPI620415A/turkey/Iowa/13541-1/2015 (A/H5N2) segment 4 (HA)3103.50.000000e+001696/1704 (99%)EPI587521A/American wigeon/BC/050-31/2015 (A/H5N8) segment 4 (HA)3103.50.000000e+001696/1704 (99%)EPI585084A/turkey/California/K1500169-1.2/2015 (A/H5N8) segment 4 (HA)3103.50.000000e+001696/1704 (99%)EPI620429A/turkey/Iowa/14318-1/2015 (A/H5N2) segment 4 (HA)3098.00.000000e+001695/1704 (99%)EPI588968A/chicken/Taiwan/a174/2015 (A/H5N3) segment 4 (HA)3092.40.000000e+001694/1704 (99%)EPI573638A/crane/Kagoshima/KU13/2014(H5N8) (A/H5N8) segment 4 (HA)3092.40.000000e+001694/1704 (99%)EPI588960A/duck/Taiwan/a043/2015 (A/H5N2) segment 4 (HA)3086.90.000000e+001693/1704 (99%)EPI573286A/American green-winged teal/Washington/195750/2014 (A/H5N1) segment 4 (HA)3086.90.000000e+001693/1704 (99%)EPI588976A/duck/Taiwan/a068/2015 (A/H5N8) segment 4 (HA)3075.80.000000e+001691/1704 (99%)EPI553208A/crane/Kagoshima/KU1/2014 (A/H5N8) segment 4 (HA)3066.60.000000e+001688/1702 (99%)EPI573208A/gadwall/Korea/H1351/2014 (A/H5N8) segment 4 (HA)3064.70.000000e+001690/1705 (99%)EPI561570A/Baikal teal/Korea/H96/2014 (A/H5N8) segment 4 (HA)3064.70.000000e+001689/1704 (99%)EPI588952A/goose/Taiwan/a015/2015 (A/H5N8) segment 4 (HA)3059.20.000000e+001688/1704 (99%)EPI585595A/baikal teal/Korea/2417/2014 (A/H5N8) segment 4 (HA)3059.20.000000e+001689/1705 (99%)EPI585589A/baikal teal/Korea/2399/2014 (A/H5N8) segment 4 (HA)3059.20.000000e+001689/1705 (99%)EPI585586A/baikal teal/Korea/1456/2014 (A/H5N8) segment 4 (HA)3059.20.000000e+001689/1705 (99%)EPI573242A/Common Teal/Korea/H844/2014 (A/H5N8) segment 4 (HA)3059.20.000000e+001689/1705 (99%)EPI561646A/breeder duck/Korea/H249/2014 (A/H5N8) segment 4 (HA)3059.20.000000e+001689/1705 (99%)EPI561626A/mallard/Korea/H207/2014 (A/H5N8) segment 4 (HA)3059.20.000000e+001689/1705 (99%)EPI561605A/broiler duck/Korea/H145/2014 (A/H5N8) segment 4 (HA)3059.20.000000e+001689/1705 (99%)EPI561591A/breeder duck/Korea/H128/2014 (A/H5N8) segment 4 (HA)3059.20.000000e+001689/1705 (99%)EPI561529A/Baikal teal/Korea/H66/2014 (A/H5N8) segment 4 (HA)3059.20.000000e+001689/1705 (99%)EPI561508A/bean goose/Korea/H53/2014 (A/H5N8) segment 4 (HA)3059.20.000000e+001689/1705 (99%)EPI561341A/Baikal teal/Korea/H41/2014 (A/H5N8) segment 4 (HA)3059.20.000000e+001689/1705 (99%)EPI585594A/baikal teal/Korea/2416/2014 (A/H5N8) segment 4 (HA)3053.60.000000e+001688/1705 (99%)EPI585592A/baikal teal/Korea/2406/2014 (A/H5N8) segment 4 (HA)3053.60.000000e+001688/1705 (99%)EPI585591A/baikal teal/Korea/2403/2014 (A/H5N8) segment 4 (HA)3053.60.000000e+001688/1705 (99%)EPI585590A/baikal teal/Korea/2402/2014 (A/H5N8) segment 4 (HA)3053.60.000000e+001688/1705 (99%)EPI585582A/baikal teal/Korea/1448/2014 (A/H5N8) segment 4 (HA)3053.60.000000e+001688/1705 (99%)EPI585581A/baikal teal/Korea/1447/2014 (A/H5N8) segment 4 (HA)3053.60.000000e+001688/1705 (99%)EPI585579A/baikal teal/Korea/1445/2014 (A/H5N8) segment 4 (HA)3053.60.000000e+001688/1705 (99%)EPI585577A/baikal teal/Korea/1437/2014 (A/H5N8) segment 4 (HA)3053.60.000000e+001688/1705 (99%)EPI573199A/breeder chicken/Korea/H1068/2014 (A/H5N8) segment 4 (HA)3053.60.000000e+001688/1705 (99%)EPI573197A/chicken/Korea/H881/2014 (A/H5N8) segment 4 (HA)3053.60.000000e+001688/1705 (99%)EPI561674A/bean goose/Korea/H328/2014 (A/H5N8) segment 4 (HA)3053.60.000000e+001688/1705 (99%)EPI561612A/breeder duck/Korea/H158/2014 (A/H5N8) segment 4 (HA)3053.60.000000e+001688/1705 (99%)EPI561577A/breeder chicken/Korea/H122/2014 (A/H5N8) segment 4 (HA)3053.60.000000e+001688/1705 (99%)EPI561563A/Baikal teal/Korea/H84/2014 (A/H5N8) segment 4 (HA)3053.60.000000e+001688/1705 (99%)EPI561542A/Baikal teal/Korea/H68/2014 (A/H5N8) segment 4 (HA)3053.60.000000e+001688/1705 (99%)EPI561522A/broiler duck/Korea/H65/2014 (A/H5N8) segment 4 (HA)3053.60.000000e+001688/1705 (99%)EPI585593A/baikal teal/Korea/2414/2014 (A/H5N8) segment 4 (HA)3048.10.000000e+001687/1705 (98%)EPI585587A/baikal teal/Korea/1457/2014 (A/H5N8) segment 4 (HA)3048.10.000000e+001687/1705 (98%)EPI585584A/baikal teal/Korea/1452/2014 (A/H5N8) segment 4 (HA)3048.10.000000e+001687/1705 (98%)EPI585583A/baikal teal/Korea/1449/2014 (A/H5N8) segment 4 (HA)3048.10.000000e+001687/1705 (98%)EPI561705A/bean goose/Korea/H40/2014 (A/H5N8) segment 4 (HA)3048.10.000000e+001687/1705 (98%)EPI561667A/mallard/Korea/H297/2014 (A/H5N8) segment 4 (HA)3048.10.000000e+001688/1706 (98%)EPI561653A/breeder chicken/Korea/H250/2014 (A/H5N8) segment 4 (HA)3048.10.000000e+001687/1705 (98%)EPI561633A/white-fronted goose/Korea/H231/2014 (A/H5N8) segment 4 (HA)3048.10.000000e+001687/1705 (98%)EPI509704A/broiler duck/Korea/Buan2/2014 (A/H5N8) segment 4 (HA)3048.10.000000e+001687/1705 (98%)EPI585580A/baikal teal/Korea/1446/2014 (A/H5N8) segment 4 (HA)3042.60.000000e+001686/1705 (98%)EPI573200A/Korean native chicken/Korea/H1139/2014 (A/H5N8) segment 4 (HA)3042.60.000000e+001686/1705 (98%)EPI573196A/broiler duck/Korea/H651/2014 (A/H5N8) segment 4 (HA)3042.60.000000e+001686/1705 (98%)EPI573194A/breeder chicken/Korea/H818/2014 (A/H5N8) segment 4 (HA)3042.60.000000e+001686/1705 (98%)EPI561697A/spot-billed duck/Korea/H455-42/2014 (A/H5N8) segment 4 (HA)3042.60.000000e+001686/1705 (98%)EPI561681A/tundra swan/Korea/H411/2014 (A/H5N8) segment 4 (HA)3042.60.000000e+001686/1705 (98%)EPI561660A/Korean native chicken/Korea/H257/2014 (A/H5N8) segment 4 (HA)3042.60.000000e+001686/1705 (98%)EPI561598A/broiler duck/Korea/H133/2014 (A/H5N8) segment 4 (HA)3042.60.000000e+001686/1705 (98%)EPI561360A/broiler duck/Korea/H49/2014 (A/H5N8) segment 4 (HA)3042.60.000000e+001686/1705 (98%)EPI561348A/broiler duck/Korea/H47/2014 (A/H5N8) segment 4 (HA)3042.60.000000e+001686/1705 (98%)EPI561336A/broiler duck/Korea/H48/2014 (A/H5N8) segment 4 (HA)3042.60.000000e+001686/1705 (98%)EPI561204A/broiler duck/Korea/H31/2014 (A/H5N8) segment 4 (HA)3042.60.000000e+001686/1705 (98%)EPI561196A/broiler duck/Korea/H29/2014 (A/H5N8) segment 4 (HA)3042.60.000000e+001686/1705 (98%)EPI561187A/waterfowl/Korea/S005/2014 (A/H5N8) segment 4 (HA)3042.60.000000e+001686/1705 (98%)EPI517161A/Chicken/Kumamoto/1-7/2014 (A/H5N8) segment 4 (HA)3042.60.000000e+001686/1705 (98%)
niman Posted July 2, 2015 Author Report Posted July 2, 2015 AlignSegment-IDNameScoreE-ValueIdentityEPI620410A/turkey/Iowa/11762-1/2015 (A/H5N2) segment 6 (NA)2604.90.000000e+001410/1410 (100%)EPI590742A/turkey/Minnesota/9845-4/2015 (A/H5N2) segment 6 (NA)2604.90.000000e+001410/1410 (100%)EPI590687A/turkey/Minnesota/9892-2/2015 (A/H5N2) segment 6 (NA)2604.90.000000e+001410/1410 (100%)EPI590721A/turkey/Missouri/7458-1/2015 (A/H5N2) segment 6 (NA)2599.40.000000e+001409/1410 (99%)EPI590714A/turkey/Minnesota/7172-1/2015 (A/H5N2) segment 6 (NA)2593.80.000000e+001408/1410 (99%)EPI620459A/chicken/Iowa/14589-1/2015 (A/H5N2) segment 6 (NA)2588.30.000000e+001407/1410 (99%)EPI620452A/chicken/Iowa/14399-4/2015 (A/H5N2) segment 6 (NA)2588.30.000000e+001407/1410 (99%)EPI620445A/chicken/Iowa/14322-6/2015 (A/H5N2) segment 6 (NA)2588.30.000000e+001407/1410 (99%)EPI620438A/turkey/Iowa/14319-1/2015 (A/H5N2) segment 6 (NA)2588.30.000000e+001407/1410 (99%)EPI620431A/turkey/Iowa/14318-1/2015 (A/H5N2) segment 6 (NA)2588.30.000000e+001407/1410 (99%)EPI620424A/chicken/Iowa/13542-2/2015 (A/H5N2) segment 6 (NA)2588.30.000000e+001407/1410 (99%)EPI620417A/turkey/Iowa/13541-1/2015 (A/H5N2) segment 6 (NA)2588.30.000000e+001407/1410 (99%)EPI590735A/chicken/Kansas/8395-3/2015 (A/H5N2) segment 6 (NA)2588.30.000000e+001407/1410 (99%)EPI590728A/turkey/Arkansas/7791-1/2015 (A/H5N2) segment 6 (NA)2588.30.000000e+001407/1410 (99%)EPI587635A/chicken/Iowa/04-20/2015 (A/H5N2) segment 6 (NA)2588.30.000000e+001407/1410 (99%)EPI573282A/turkey/Washington/61-22/2014 (A/H5N2) segment 6 (NA)2588.30.000000e+001407/1410 (99%)EPI586544A/chicken/BC/FAV23/2014 (A/H5N2) segment 6 (NA)2582.70.000000e+001406/1410 (99%)EPI586511A/poultry/BC/FAV19/2014 (A/H5N2) segment 6 (NA)2582.70.000000e+001406/1410 (99%)EPI584081A/turkey/BC/FAV14/2014 (A/H5N2) segment 6 (NA)2582.70.000000e+001406/1410 (99%)EPI573278A/domestic duck/Washington/61-16/2014 (A/H5N2) segment 6 (NA)2582.70.000000e+001406/1410 (99%)EPI573273A/chicken/Washington/61-9/2014 (A/H5N2) segment 6 (NA)2582.70.000000e+001406/1410 (99%)EPI590701A/chicken/Oregon/A01819044/2015 (A/H5N2) segment 6 (NA)2577.20.000000e+001405/1410 (99%)EPI586520A/chicken/BC/FAV20/2014 (A/H5N2) segment 6 (NA)2577.20.000000e+001405/1410 (99%)EPI585094A/pheasant/Washington/3147-2/2015 (A/H5N2) segment 6 (NA)2577.20.000000e+001405/1410 (99%)EPI586552A/chicken/BC/FAV24/2014 (A/H5N2) segment 6 (NA)2571.70.000000e+001404/1410 (99%)EPI586528A/chicken/BC/FAV21/2014 (A/H5N2) segment 6 (NA)2571.70.000000e+001404/1410 (99%)EPI586495A/poultry/BC/FAV15/2014 (A/H5N2) segment 6 (NA)2571.70.000000e+001404/1410 (99%)EPI569385A/Northern pintail/Washington/40964/2014 (A/H5N2) segment 6 (NA)2571.70.000000e+001404/1410 (99%)EPI586536A/chicken/BC/FAV22/2014 (A/H5N2) segment 6 (NA)2568.00.000000e+001403/1410 (99%)EPI586560A/chicken/BC/FAV25/2014 (A/H5N2) segment 6 (NA)2566.10.000000e+001403/1410 (99%)EPI586503A/poultry/BC/FAV17/2014 (A/H5N2) segment 6 (NA)2566.10.000000e+001403/1410 (99%)EPI576479A/chicken/BC/FAV9/2014 (A/H5N2) segment 6 (NA)2566.10.000000e+001403/1410 (99%)EPI576472A/chicken/BC/FAV8/2014 (A/H5N2) segment 6 (NA)2566.10.000000e+001403/1410 (99%)EPI573300A/turkey/BC/FAV10/2014 (A/H5N2) segment 6 (NA)2566.10.000000e+001403/1410 (99%)EPI590694A/chicken/Washington/3490-18/2015 (A/H5N2) segment 6 (NA)2560.60.000000e+001402/1410 (99%)EPI418959A/American green-winged teal/Wisconsin/10OS3127/2010 (A/H5N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI512135A/northern pintail/Mississippi/12OS420/2012 (A/H0) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI450007A/blue-winged teal/Louisiana/AI09-5234/2009 (A/H11N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI418609A/American green-winged teal/Mississippi/11OS98/2011 (A/H0) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI332004A/blue-winged teal/Guatemala/CIP049-10/2009 (A/H11N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI331988A/blue-winged teal/Guatemala/CIP049-03/2009 (A/H11N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI512150A/northern shoveler/Mississippi/12OS456/2012 (A/H14N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI420145A/northern shoveler/California/3676/2010 (A/H8N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI419288A/American wigeon/Iowa/10OS2748/2010 (A/H2N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI418807A/American green-winged teal/Illinois/10OS3589/2010 (A/H6N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI418497A/blue-winged teal/Illinois/10OS3610/2010 (A/H6N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI418472A/mallard/Illinois/10OS3245/2010 (A/H0) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI387177A/mallard/California/2396/2010 (A/H5N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI333605A/American green-winged teal/Mississippi/404/2010 (A/H0) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI331996A/blue-winged teal/Guatemala/CIP049-11/2009 (A/H11N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI512531A/gadwall/Mississippi/11OS6084/2011 (A/H11N2) segment 6 (NA)2449.80.000000e+001382/1410 (98%)EPI512524A/northern shoveler/Mississippi/11OS6077/2011 (A/H11N2) segment 6 (NA)2449.80.000000e+001382/1410 (98%)EPI418721A/mallard/Wisconsin/10OS2538/2010 (A/H3N2) segment 6 (NA)2449.80.000000e+001382/1410 (98%)EPI512591A/northern shoveler/Mississippi/11OS5875/2011 (A/H5N2) segment 6 (NA)2444.20.000000e+001381/1410 (97%)EPI419077A/mallard/Wisconsin/10OS3066/2010 (A/H6N2) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI616345A/American green-winged teal/Mississippi/12OS5061/2012 (A/H5N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI419118A/mallard/Mississippi/10OS4593/2010 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI221406A/American green-winged teal/California/HKWF609/2007 (A/H5N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI419654A/gadwall/Missouri/10MO0280/2010 (A/H5N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI419647A/mallard/Missouri/10MO0253/2010 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI419111A/gadwall/Mississippi/10OS4531/2010 (A/H6N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI419138A/northern shoveler/Mississippi/10OS4526/2010 (A/H6N2) segment 6 (NA)2422.10.000000e+001377/1410 (97%)EPI413459A/mallard/Ohio/11OS2213/2011 (A/H11N2) segment 6 (NA)2422.10.000000e+001377/1410 (97%)EPI328608A/northern shoveler/California/8855/2008 (A/H5N2) segment 6 (NA)2422.10.000000e+001377/1410 (97%)EPI280744A/avian/Missouri/466554-6/2006 (A/H5N2) segment 6 (NA)2422.10.000000e+001377/1410 (97%)EPI513011A/northern pintail/Wisconsin/11OS4111/2011 (A/H6N2) segment 6 (NA)2416.50.000000e+001377/1411 (97%)EPI328639A/mallard/California/11100/2008 (A/H11N2) segment 6 (NA)2416.50.000000e+001376/1410 (97%)EPI328582A/northern shoveler/California/9680/2008 (A/H6N2) segment 6 (NA)2416.50.000000e+001376/1410 (97%)EPI328476A/green-winged teal/California/11285/2008 (A/H0) segment 6 (NA)2416.50.000000e+001376/1410 (97%)EPI328156A/mallard/California/11353/2008 (A/H10N2) segment 6 (NA)2416.50.000000e+001376/1410 (97%)EPI328489A/green-winged teal/California/7972/2008 (A/H6N2) segment 6 (NA)2411.00.000000e+001375/1410 (97%)EPI328108A/northern shoveler/California/9017/2008 (A/H11N2) segment 6 (NA)2411.00.000000e+001375/1410 (97%)EPI419755A/northern shoveler/California/2815/2011 (A/H5N2) segment 6 (NA)2405.50.000000e+001374/1410 (97%)EPI327900A/northern pintail/California/6791/2008 (A/H11N2) segment 6 (NA)2405.50.000000e+001374/1410 (97%)EPI420032A/mallard/California/2571V/2011 (A/H0) segment 6 (NA)2399.90.000000e+001373/1410 (97%)EPI420024A/mallard/California/2571P/2011 (A/H11N2) segment 6 (NA)2399.90.000000e+001373/1410 (97%)EPI418643A/mallard/Illinois/10OS3249/2010 (A/H11N2) segment 6 (NA)2399.90.000000e+001373/1410 (97%)EPI334262A/mallard/Iowa/3195/2009 (A/H0) segment 6 (NA)2399.90.000000e+001374/1411 (97%)EPI285601A/wild bird/Wisconsin/433163-1/2006 (A/H5N2) segment 6 (NA)2394.40.000000e+001372/1410 (97%)EPI328316A/mallard/California/6420/2008 (A/H6N2) segment 6 (NA)2383.30.000000e+001371/1411 (97%)EPI442430A/brant/Alaska/44332-426/2007 (A/H10N2) segment 6 (NA)2377.80.000000e+001369/1410 (97%)EPI285602A/wild bird/Wisconsin/439436-2/2006 (A/H5N2) segment 6 (NA)2377.80.000000e+001369/1410 (97%)EPI285592A/wild bird/Wisconsin/439436/2006 (A/H5N2) segment 6 (NA)2377.80.000000e+001369/1410 (97%)EPI299469A/American green-winged teal/Wisconsin/08OS2291/2008 (A/H3N2) segment 6 (NA)2372.20.000000e+001368/1410 (97%)EPI299389A/gadwall/Wisconsin/08OS2293/2008 (A/H3N2) segment 6 (NA)2372.20.000000e+001368/1410 (97%)EPI299381A/American green-winged teal/Wisconsin/08OS2292/2008 (A/H3N2) segment 6 (NA)2372.20.000000e+001368/1410 (97%)EPI280848A/wild bird/Minnesota/460613-12/2006 (A/H5N2) segment 6 (NA)2372.20.000000e+001368/1410 (97%)EPI449517A/mallard/Minnesota/Sg-00847/2008 (A/H0) segment 6 (NA)2366.70.000000e+001367/1410 (96%)EPI413390A/mallard/Ohio/10OS1470/2010 (A/H3N2) segment 6 (NA)2366.70.000000e+001367/1410 (96%)EPI413383A/mallard/Ohio/10OS1469/2010 (A/H3N2) segment 6 (NA)2366.70.000000e+001367/1410 (96%)EPI413369A/mallard/Ohio/10OS1467/2010 (A/H3N2) segment 6 (NA)2366.70.000000e+001367/1410 (96%)EPI285597A/mallard/NV/450206/2006 (A/H5N2) segment 6 (NA)2366.70.000000e+001367/1410 (96%)EPI285595A/mallard/NV/449567-4/2006 (A/H5N2) segment 6 (NA)2366.70.000000e+001367/1410 (96%)EPI285594A/mallard/NV/449567-2/2006 (A/H5N2) segment 6 (NA)2366.70.000000e+001367/1410 (96%)EPI280656A/mallard/Arkansas/473507-9/2006 (A/H5N2) segment 6 (NA)2366.70.000000e+001367/1410 (96%)EPI280544A/mallard/Nevada/450206-4/2006 (A/H5N2) segment 6 (NA)2366.70.000000e+001367/1410 (96%)EPI222394A/northern pintail/Saskatchewan/22910/2007 (A/H3N2) segment 6 (NA)2366.70.000000e+001367/1410 (96%)EPI187901A/mallard/Minnesota/Sg-00129/2007 (A/H6N2) segment 6 (NA)2363.00.000000e+001359/1399 (97%)EPI449695A/green-winged teal/Minnesota/Sg-01073/2008 (A/H6N2) segment 6 (NA)2361.10.000000e+001366/1410 (96%)EPI449653A/mallard/Minnesota/Sg-01040/2008 (A/H3N2) segment 6 (NA)2361.10.000000e+001366/1410 (96%)
niman Posted July 2, 2015 Author Report Posted July 2, 2015 AlignSegment-IDNameScoreE-ValueIdentityEPI620411A/turkey/Iowa/11762-1/2015 (A/H5N2) segment 7 (MP)1814.50.000000e+00982/982 (100%)EPI590743A/turkey/Minnesota/9845-4/2015 (A/H5N2) segment 7 (MP)1814.50.000000e+00982/982 (100%)EPI590736A/chicken/Kansas/8395-3/2015 (A/H5N2) segment 7 (MP)1814.50.000000e+00982/982 (100%)EPI590729A/turkey/Arkansas/7791-1/2015 (A/H5N2) segment 7 (MP)1814.50.000000e+00982/982 (100%)EPI590722A/turkey/Missouri/7458-1/2015 (A/H5N2) segment 7 (MP)1814.50.000000e+00982/982 (100%)EPI590708A/chicken/Oregon/A01819044/2015 (A/H5N2) segment 7 (MP)1814.50.000000e+00982/982 (100%)EPI590688A/turkey/Minnesota/9892-2/2015 (A/H5N2) segment 7 (MP)1814.50.000000e+00982/982 (100%)EPI568701A/domestic duck/Washington/61-16/2014 (A/H5N2) segment 7 (MP)1814.50.000000e+00982/982 (100%)EPI568698A/turkey/Washington/61-22/2014 (A/H5N2) segment 7 (MP)1814.50.000000e+00982/982 (100%)EPI568697A/chicken/Washington/61-9/2014 (A/H5N2) segment 7 (MP)1814.50.000000e+00982/982 (100%)EPI620460A/chicken/Iowa/14589-1/2015 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI620453A/chicken/Iowa/14399-4/2015 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI620446A/chicken/Iowa/14322-6/2015 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI620439A/turkey/Iowa/14319-1/2015 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI620432A/turkey/Iowa/14318-1/2015 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI620425A/chicken/Iowa/13542-2/2015 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI620418A/turkey/Iowa/13541-1/2015 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI590715A/turkey/Minnesota/7172-1/2015 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI587636A/chicken/Iowa/04-20/2015 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI586561A/chicken/BC/FAV25/2014 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI586553A/chicken/BC/FAV24/2014 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI586521A/chicken/BC/FAV20/2014 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI586504A/poultry/BC/FAV17/2014 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI585651A/baikal teal/Korea/2416/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI585650A/baikal teal/Korea/2414/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI585649A/baikal teal/Korea/2406/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI585647A/baikal teal/Korea/2402/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI585646A/baikal teal/Korea/2399/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI585645A/baikal teal/Korea/1458/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI585644A/baikal teal/Korea/1457/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI585643A/baikal teal/Korea/1456/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI585642A/baikal teal/Korea/1454/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI585641A/baikal teal/Korea/1452/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI585639A/baikal teal/Korea/1448/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI585638A/baikal teal/Korea/1447/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI585637A/baikal teal/Korea/1446/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI585635A/baikal teal/Korea/1441/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI585634A/baikal teal/Korea/1437/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI585087A/turkey/California/K1500169-1.2/2015 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI584082A/turkey/BC/FAV14/2014 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI576480A/chicken/BC/FAV9/2014 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI576473A/chicken/BC/FAV8/2014 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI573301A/turkey/BC/FAV10/2014 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI569386A/Northern pintail/Washington/40964/2014 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI561700A/spot-billed duck/Korea/H455-42/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI561693A/common teal/Korea/H455-30/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI561684A/tundra swan/Korea/H411/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI561677A/bean goose/Korea/H328/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI561670A/mallard/Korea/H297/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI561656A/breeder chicken/Korea/H250/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI561649A/breeder duck/Korea/H249/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI561636A/white-fronted goose/Korea/H231/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI561629A/mallard/Korea/H207/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI561622A/breeder duck/Korea/H200/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI561601A/broiler duck/Korea/H133/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI561594A/breeder duck/Korea/H128/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI561580A/breeder chicken/Korea/H122/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI561573A/Baikal teal/Korea/H96/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI561566A/Baikal teal/Korea/H84/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI561559A/Coot/Korea/H81/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI561552A/Baikal teal/Korea/H80/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI561532A/Baikal teal/Korea/H66/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI561525A/broiler duck/Korea/H65/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI561511A/bean goose/Korea/H53/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI561351A/broiler duck/Korea/H47/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI561344A/Baikal teal/Korea/H41/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI561211A/broiler duck/Korea/H31/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI561199A/broiler duck/Korea/H29/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI561190A/waterfowl/Korea/S005/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI553211A/crane/Kagoshima/KU1/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI542633A/mallard/Korea/W452/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI517164A/Chicken/Kumamoto/1-7/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI509756A/baikal teal/Korea/Donglim3/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI509711A/broiler duck/Korea/Buan2/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI590695A/chicken/Washington/3490-18/2015 (A/H5N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI587524A/American wigeon/BC/050-31/2015 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI586545A/chicken/BC/FAV23/2014 (A/H5N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI586537A/chicken/BC/FAV22/2014 (A/H5N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI586529A/chicken/BC/FAV21/2014 (A/H5N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI586513A/poultry/BC/FAV19/2014 (A/H5N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI586496A/poultry/BC/FAV15/2014 (A/H5N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI585652A/baikal teal/Korea/2417/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI585648A/baikal teal/Korea/2403/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI585640A/baikal teal/Korea/1449/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI585636A/baikal teal/Korea/1445/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI585095A/pheasant/Washington/3147-2/2015 (A/H5N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI573289A/American green-winged teal/Washington/195750/2014 (A/H5N1) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI569393A/gyrfalcon/Washington/41088-6/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI568702A/guinea fowl/Oregon/41613-1/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI568699A/chicken/Oregon/41613-2/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561708A/bean goose/Korea/H40/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561663A/Korean native chicken/Korea/H257/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561615A/breeder duck/Korea/H158/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561608A/broiler duck/Korea/H145/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561545A/Baikal teal/Korea/H68/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561518A/Baikal teal/Korea/H62/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561363A/broiler duck/Korea/H49/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561356A/broiler duck/Korea/H48/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI554603A/turkey/Germany-NI/R3372/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI553346A/chicken/Miyazaki/7/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)
niman Posted July 2, 2015 Author Report Posted July 2, 2015 AlignSegment-IDNameScoreE-ValueIdentityEPI620406A/turkey/Iowa/11762-1/2015 (A/H5N2) segment 1 (PB2)4211.50.000000e+002280/2280 (100%)EPI590738A/turkey/Minnesota/9845-4/2015 (A/H5N2) segment 1 (PB2)4200.40.000000e+002278/2280 (99%)EPI590724A/turkey/Arkansas/7791-1/2015 (A/H5N2) segment 1 (PB2)4200.40.000000e+002278/2280 (99%)EPI590683A/turkey/Minnesota/9892-2/2015 (A/H5N2) segment 1 (PB2)4200.40.000000e+002278/2280 (99%)EPI620455A/chicken/Iowa/14589-1/2015 (A/H5N2) segment 1 (PB2)4194.90.000000e+002277/2280 (99%)EPI620427A/turkey/Iowa/14318-1/2015 (A/H5N2) segment 1 (PB2)4194.90.000000e+002277/2280 (99%)EPI620420A/chicken/Iowa/13542-2/2015 (A/H5N2) segment 1 (PB2)4194.90.000000e+002277/2280 (99%)EPI620413A/turkey/Iowa/13541-1/2015 (A/H5N2) segment 1 (PB2)4194.90.000000e+002277/2280 (99%)EPI587630A/chicken/Iowa/04-20/2015 (A/H5N2) segment 1 (PB2)4194.90.000000e+002277/2280 (99%)EPI620448A/chicken/Iowa/14399-4/2015 (A/H5N2) segment 1 (PB2)4189.30.000000e+002276/2280 (99%)EPI620441A/chicken/Iowa/14322-6/2015 (A/H5N2) segment 1 (PB2)4189.30.000000e+002276/2280 (99%)EPI620434A/turkey/Iowa/14319-1/2015 (A/H5N2) segment 1 (PB2)4189.30.000000e+002276/2280 (99%)EPI586531A/chicken/BC/FAV22/2014 (A/H5N2) segment 1 (PB2)4189.30.000000e+002276/2280 (99%)EPI586498A/poultry/BC/FAV17/2014 (A/H5N2) segment 1 (PB2)4189.30.000000e+002276/2280 (99%)EPI586490A/poultry/BC/FAV15/2014 (A/H5N2) segment 1 (PB2)4189.30.000000e+002276/2280 (99%)EPI573296A/turkey/BC/FAV10/2014 (A/H5N2) segment 1 (PB2)4189.30.000000e+002276/2280 (99%)EPI573279A/turkey/Washington/61-22/2014 (A/H5N2) segment 1 (PB2)4189.30.000000e+002276/2280 (99%)EPI573274A/domestic duck/Washington/61-16/2014 (A/H5N2) segment 1 (PB2)4189.30.000000e+002276/2280 (99%)EPI590731A/chicken/Kansas/8395-3/2015 (A/H5N2) segment 1 (PB2)4183.80.000000e+002275/2280 (99%)EPI590717A/turkey/Missouri/7458-1/2015 (A/H5N2) segment 1 (PB2)4183.80.000000e+002275/2280 (99%)EPI586555A/chicken/BC/FAV25/2014 (A/H5N2) segment 1 (PB2)4183.80.000000e+002275/2280 (99%)EPI586547A/chicken/BC/FAV24/2014 (A/H5N2) segment 1 (PB2)4183.80.000000e+002275/2280 (99%)EPI586539A/chicken/BC/FAV23/2014 (A/H5N2) segment 1 (PB2)4183.80.000000e+002275/2280 (99%)EPI586523A/chicken/BC/FAV21/2014 (A/H5N2) segment 1 (PB2)4183.80.000000e+002275/2280 (99%)EPI585089A/pheasant/Washington/3147-2/2015 (A/H5N2) segment 1 (PB2)4183.80.000000e+002275/2280 (99%)EPI584076A/turkey/BC/FAV14/2014 (A/H5N2) segment 1 (PB2)4183.80.000000e+002275/2280 (99%)EPI576475A/chicken/BC/FAV9/2014 (A/H5N2) segment 1 (PB2)4183.80.000000e+002275/2280 (99%)EPI576468A/chicken/BC/FAV8/2014 (A/H5N2) segment 1 (PB2)4183.80.000000e+002275/2280 (99%)EPI573269A/chicken/Washington/61-9/2014 (A/H5N2) segment 1 (PB2)4183.80.000000e+002275/2280 (99%)EPI569380A/gyrfalcon/Washington/41088-6/2014 (A/H5N8) segment 1 (PB2)4183.80.000000e+002275/2280 (99%)EPI569379A/Northern pintail/Washington/40964/2014 (A/H5N2) segment 1 (PB2)4183.80.000000e+002275/2280 (99%)EPI590710A/turkey/Minnesota/7172-1/2015 (A/H5N2) segment 1 (PB2)4178.20.000000e+002274/2280 (99%)EPI590697A/chicken/Oregon/A01819044/2015 (A/H5N2) segment 1 (PB2)4178.20.000000e+002274/2280 (99%)EPI586515A/chicken/BC/FAV20/2014 (A/H5N2) segment 1 (PB2)4178.20.000000e+002275/2281 (99%)EPI585081A/turkey/California/K1500169-1.2/2015 (A/H5N8) segment 1 (PB2)4178.20.000000e+002274/2280 (99%)EPI569369A/guinea fowl/Oregon/41613-1/2014 (A/H5N8) segment 1 (PB2)4178.20.000000e+002274/2280 (99%)EPI569367A/chicken/Oregon/41613-2/2014 (A/H5N8) segment 1 (PB2)4178.20.000000e+002274/2280 (99%)EPI586506A/poultry/BC/FAV19/2014 (A/H5N2) segment 1 (PB2)4174.50.000000e+002273/2280 (99%)EPI590690A/chicken/Washington/3490-18/2015 (A/H5N2) segment 1 (PB2)4172.70.000000e+002273/2280 (99%)EPI587519A/American wigeon/BC/050-31/2015 (A/H5N8) segment 1 (PB2)4172.70.000000e+002273/2280 (99%)EPI573283A/American green-winged teal/Washington/195750/2014 (A/H5N1) segment 1 (PB2)4167.20.000000e+002272/2280 (99%)EPI588949A/goose/Taiwan/a015/2015 (A/H5N8) segment 1 (PB2)4139.50.000000e+002267/2280 (99%)EPI553205A/crane/Kagoshima/KU1/2014 (A/H5N8) segment 1 (PB2)4139.50.000000e+002267/2280 (99%)EPI585557A/baikal teal/Korea/2417/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI585556A/baikal teal/Korea/2416/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI585553A/baikal teal/Korea/2403/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI585543A/baikal teal/Korea/1447/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI585541A/baikal teal/Korea/1445/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI561702A/bean goose/Korea/H40/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI561672A/bean goose/Korea/H328/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI561631A/white-fronted goose/Korea/H231/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI561624A/mallard/Korea/H207/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI561568A/Baikal teal/Korea/H96/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI561540A/Baikal teal/Korea/H68/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI561527A/Baikal teal/Korea/H66/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI561506A/bean goose/Korea/H53/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI561358A/broiler duck/Korea/H49/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI585554A/baikal teal/Korea/2406/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI585551A/baikal teal/Korea/2399/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI585550A/baikal teal/Korea/1458/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI585548A/baikal teal/Korea/1456/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI585546A/baikal teal/Korea/1452/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI585545A/baikal teal/Korea/1449/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI585544A/baikal teal/Korea/1448/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI585539A/baikal teal/Korea/1437/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI561610A/breeder duck/Korea/H158/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI561603A/broiler duck/Korea/H145/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI561575A/breeder chicken/Korea/H122/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI561561A/Baikal teal/Korea/H84/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI561513A/Baikal teal/Korea/H62/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI561353A/broiler duck/Korea/H48/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI561339A/Baikal teal/Korea/H41/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI585555A/baikal teal/Korea/2414/2014 (A/H5N8) segment 1 (PB2)4122.80.000000e+002264/2280 (99%)EPI585549A/baikal teal/Korea/1457/2014 (A/H5N8) segment 1 (PB2)4122.80.000000e+002264/2280 (99%)EPI585542A/baikal teal/Korea/1446/2014 (A/H5N8) segment 1 (PB2)4122.80.000000e+002264/2280 (99%)EPI585540A/baikal teal/Korea/1441/2014 (A/H5N8) segment 1 (PB2)4122.80.000000e+002264/2280 (99%)EPI573635A/crane/Kagoshima/KU13/2014(H5N8) (A/H5N8) segment 1 (PB2)4122.80.000000e+002264/2280 (99%)EPI561679A/tundra swan/Korea/H411/2014 (A/H5N8) segment 1 (PB2)4122.80.000000e+002264/2280 (99%)EPI561665A/mallard/Korea/H297/2014 (A/H5N8) segment 1 (PB2)4122.80.000000e+002264/2280 (99%)EPI561651A/breeder chicken/Korea/H250/2014 (A/H5N8) segment 1 (PB2)4122.80.000000e+002264/2280 (99%)EPI561644A/breeder duck/Korea/H249/2014 (A/H5N8) segment 1 (PB2)4122.80.000000e+002264/2280 (99%)EPI561596A/broiler duck/Korea/H133/2014 (A/H5N8) segment 1 (PB2)4122.80.000000e+002264/2280 (99%)EPI561589A/breeder duck/Korea/H128/2014 (A/H5N8) segment 1 (PB2)4122.80.000000e+002264/2280 (99%)EPI561554A/Coot/Korea/H81/2014 (A/H5N8) segment 1 (PB2)4122.80.000000e+002264/2280 (99%)EPI561547A/Baikal teal/Korea/H80/2014 (A/H5N8) segment 1 (PB2)4122.80.000000e+002264/2280 (99%)EPI561520A/broiler duck/Korea/H65/2014 (A/H5N8) segment 1 (PB2)4122.80.000000e+002264/2280 (99%)EPI561346A/broiler duck/Korea/H47/2014 (A/H5N8) segment 1 (PB2)4122.80.000000e+002264/2280 (99%)EPI561201A/broiler duck/Korea/H31/2014 (A/H5N8) segment 1 (PB2)4122.80.000000e+002264/2280 (99%)EPI561194A/broiler duck/Korea/H29/2014 (A/H5N8) segment 1 (PB2)4122.80.000000e+002264/2280 (99%)EPI561185A/waterfowl/Korea/S005/2014 (A/H5N8) segment 1 (PB2)4122.80.000000e+002264/2280 (99%)EPI542630A/mallard/Korea/W452/2014 (A/H5N8) segment 1 (PB2)4122.80.000000e+002264/2280 (99%)EPI509707A/baikal teal/Korea/Donglim3/2014 (A/H5N8) segment 1 (PB2)4122.80.000000e+002264/2280 (99%)EPI509702A/broiler duck/Korea/Buan2/2014 (A/H5N8) segment 1 (PB2)4122.80.000000e+002264/2280 (99%)EPI585547A/baikal teal/Korea/1454/2014 (A/H5N8) segment 1 (PB2)4117.30.000000e+002263/2280 (99%)EPI561695A/spot-billed duck/Korea/H455-42/2014 (A/H5N8) segment 1 (PB2)4117.30.000000e+002263/2280 (99%)EPI561658A/Korean native chicken/Korea/H257/2014 (A/H5N8) segment 1 (PB2)4117.30.000000e+002263/2280 (99%)EPI561617A/breeder duck/Korea/H200/2014 (A/H5N8) segment 1 (PB2)4117.30.000000e+002263/2280 (99%)EPI517158A/Chicken/Kumamoto/1-7/2014 (A/H5N8) segment 1 (PB2)4117.30.000000e+002263/2280 (99%)EPI561688A/common teal/Korea/H455-30/2014 (A/H5N8) segment 1 (PB2)4111.80.000000e+002262/2280 (99%)EPI595139A/greater white-fronted goose/Korea/K14-374-1/2014 (A/H5N8) segment 1 (PB2)4089.60.000000e+002258/2280 (99%)
niman Posted July 2, 2015 Author Report Posted July 2, 2015 AlignSegment-IDNameScoreE-ValueIdentityEPI620407A/turkey/Iowa/11762-1/2015 (A/H5N2) segment 2 (PB1)4200.40.000000e+002274/2274 (100%)EPI590684A/turkey/Minnesota/9892-2/2015 (A/H5N2) segment 2 (PB1)4194.90.000000e+002273/2274 (99%)EPI590739A/turkey/Minnesota/9845-4/2015 (A/H5N2) segment 2 (PB1)4183.80.000000e+002271/2274 (99%)EPI590698A/chicken/Oregon/A01819044/2015 (A/H5N2) segment 2 (PB1)4183.80.000000e+002271/2274 (99%)EPI586556A/chicken/BC/FAV25/2014 (A/H5N2) segment 2 (PB1)4183.80.000000e+002271/2274 (99%)EPI586540A/chicken/BC/FAV23/2014 (A/H5N2) segment 2 (PB1)4183.80.000000e+002271/2274 (99%)EPI586507A/poultry/BC/FAV19/2014 (A/H5N2) segment 2 (PB1)4183.80.000000e+002271/2274 (99%)EPI584077A/turkey/BC/FAV14/2014 (A/H5N2) segment 2 (PB1)4183.80.000000e+002271/2274 (99%)EPI573275A/domestic duck/Washington/61-16/2014 (A/H5N2) segment 2 (PB1)4183.80.000000e+002271/2274 (99%)EPI573270A/chicken/Washington/61-9/2014 (A/H5N2) segment 2 (PB1)4183.80.000000e+002271/2274 (99%)EPI569364A/turkey/Washington/61-22/2014 (A/H5N2) segment 2 (PB1)4183.80.000000e+002271/2274 (99%)EPI590718A/turkey/Missouri/7458-1/2015 (A/H5N2) segment 2 (PB1)4178.20.000000e+002270/2274 (99%)EPI590711A/turkey/Minnesota/7172-1/2015 (A/H5N2) segment 2 (PB1)4178.20.000000e+002270/2274 (99%)EPI590691A/chicken/Washington/3490-18/2015 (A/H5N2) segment 2 (PB1)4178.20.000000e+002270/2274 (99%)EPI586516A/chicken/BC/FAV20/2014 (A/H5N2) segment 2 (PB1)4178.20.000000e+002270/2274 (99%)EPI586499A/poultry/BC/FAV17/2014 (A/H5N2) segment 2 (PB1)4178.20.000000e+002270/2274 (99%)EPI586491A/poultry/BC/FAV15/2014 (A/H5N2) segment 2 (PB1)4178.20.000000e+002270/2274 (99%)EPI585090A/pheasant/Washington/3147-2/2015 (A/H5N2) segment 2 (PB1)4178.20.000000e+002270/2274 (99%)EPI576469A/chicken/BC/FAV8/2014 (A/H5N2) segment 2 (PB1)4178.20.000000e+002270/2274 (99%)EPI569381A/Northern pintail/Washington/40964/2014 (A/H5N2) segment 2 (PB1)4178.20.000000e+002270/2274 (99%)EPI620456A/chicken/Iowa/14589-1/2015 (A/H5N2) segment 2 (PB1)4172.70.000000e+002269/2274 (99%)EPI620435A/turkey/Iowa/14319-1/2015 (A/H5N2) segment 2 (PB1)4172.70.000000e+002269/2274 (99%)EPI620428A/turkey/Iowa/14318-1/2015 (A/H5N2) segment 2 (PB1)4172.70.000000e+002269/2274 (99%)EPI620421A/chicken/Iowa/13542-2/2015 (A/H5N2) segment 2 (PB1)4172.70.000000e+002269/2274 (99%)EPI620414A/turkey/Iowa/13541-1/2015 (A/H5N2) segment 2 (PB1)4172.70.000000e+002269/2274 (99%)EPI587631A/chicken/Iowa/04-20/2015 (A/H5N2) segment 2 (PB1)4172.70.000000e+002269/2274 (99%)EPI586548A/chicken/BC/FAV24/2014 (A/H5N2) segment 2 (PB1)4172.70.000000e+002269/2274 (99%)EPI586532A/chicken/BC/FAV22/2014 (A/H5N2) segment 2 (PB1)4172.70.000000e+002269/2274 (99%)EPI586524A/chicken/BC/FAV21/2014 (A/H5N2) segment 2 (PB1)4172.70.000000e+002269/2274 (99%)EPI576476A/chicken/BC/FAV9/2014 (A/H5N2) segment 2 (PB1)4172.70.000000e+002269/2274 (99%)EPI573297A/turkey/BC/FAV10/2014 (A/H5N2) segment 2 (PB1)4172.70.000000e+002269/2274 (99%)EPI620442A/chicken/Iowa/14322-6/2015 (A/H5N2) segment 2 (PB1)4167.20.000000e+002268/2274 (99%)EPI590732A/chicken/Kansas/8395-3/2015 (A/H5N2) segment 2 (PB1)4167.20.000000e+002268/2274 (99%)EPI590725A/turkey/Arkansas/7791-1/2015 (A/H5N2) segment 2 (PB1)4167.20.000000e+002268/2274 (99%)EPI620449A/chicken/Iowa/14399-4/2015 (A/H5N2) segment 2 (PB1)4145.00.000000e+002264/2274 (99%)EPI420193A/bufflehead/California/3118/2011 (A/H4N8) segment 2 (PB1)4067.40.000000e+002250/2274 (98%)EPI418616A/American green-winged teal/Mississippi/11OS98/2011 (A/H0) segment 2 (PB1)4056.40.000000e+002248/2274 (98%)EPI512660A/wood duck/Wisconsin/11OS3443/2011 (A/H11N9) segment 2 (PB1)4045.30.000000e+002246/2274 (98%)EPI512230A/mallard/Arkansas/12OS179/2012 (A/H1N1) segment 2 (PB1)4045.30.000000e+002246/2274 (98%)EPI436582A/American green-winged teal/Interior Alaska/10BM05376R0/2010 (A/H3N8) segment 2 (PB1)4045.30.000000e+002246/2274 (98%)EPI418963A/American green-winged teal/Wisconsin/10OS3127/2010 (A/H5N2) segment 2 (PB1)4045.30.000000e+002246/2274 (98%)EPI453910A/northern pintail/Interior Alaska/10BM10298R0/2010 (A/H3N8) segment 2 (PB1)4039.70.000000e+002245/2274 (98%)EPI436612A/northern shoveler/Interior Alaska/10BM05487R0/2010 (A/H3N8) segment 2 (PB1)4039.70.000000e+002245/2274 (98%)EPI436589A/northern shoveler/Interior Alaska/10BM05382R0/2010 (A/H3N8) segment 2 (PB1)4039.70.000000e+002245/2274 (98%)EPI387181A/mallard/California/2396/2010 (A/H5N2) segment 2 (PB1)4039.70.000000e+002245/2274 (98%)EPI512474A/blue-winged teal/Missouri/11OS2563/2011 (A/H12N4) segment 2 (PB1)4034.20.000000e+002244/2274 (98%)EPI452523A/northern pintail/Interior Alaska/10BM12413R0/2010 (A/H8N4) segment 2 (PB1)4034.20.000000e+002244/2274 (98%)EPI451651A/mallard/Interior Alaska/10BM07575R0/2010 (A/H7N3) segment 2 (PB1)4034.20.000000e+002244/2274 (98%)EPI436619A/northern shoveler/Interior Alaska/10BM05491R0/2010 (A/H3N8) segment 2 (PB1)4034.20.000000e+002244/2274 (98%)EPI433197A/mallard/Interior Alaska/10BM04564R1/2010 (A/H7N3) segment 2 (PB1)4034.20.000000e+002244/2274 (98%)EPI420073A/mallard/California/2578V/2011 (A/H0) segment 2 (PB1)4028.70.000000e+002243/2274 (98%)EPI419953A/mallard/California/2559P/2011 (A/H5N8) segment 2 (PB1)4028.70.000000e+002243/2274 (98%)EPI419909A/mallard/California/2552V/2011 (A/H4N8) segment 2 (PB1)4028.70.000000e+002243/2274 (98%)EPI419869A/mallard/California/2542V/2011 (A/H5N1) segment 2 (PB1)4028.70.000000e+002243/2274 (98%)EPI419842A/mallard/California/2536P/2011 (A/H5N1) segment 2 (PB1)4028.70.000000e+002243/2274 (98%)EPI419835A/mallard/California/2535V/2011 (A/H5N1) segment 2 (PB1)4028.70.000000e+002243/2274 (98%)EPI419828A/mallard/California/2535P/2011 (A/H5N1) segment 2 (PB1)4028.70.000000e+002243/2274 (98%)EPI398563A/chicken/Jalisco/12283/2012 (A/H7N3) segment 2 (PB1)4028.70.000000e+002243/2274 (98%)EPI616068A/northern shoveler/Ohio/12OS3173/2012 (A/H12N5) segment 2 (PB1)4023.10.000000e+002242/2274 (98%)EPI513088A/mallard/Wisconsin/11OS4104/2011 (A/H1N2) segment 2 (PB1)4023.10.000000e+002242/2274 (98%)EPI512676A/mallard/Wisconsin/11OS3468/2011 (A/H2N3) segment 2 (PB1)4023.10.000000e+002242/2274 (98%)EPI420142A/mallard/California/2595V/2011 (A/H12N5) segment 2 (PB1)4023.10.000000e+002242/2274 (98%)EPI420135A/mallard/California/2595P/2011 (A/H12N5) segment 2 (PB1)4023.10.000000e+002242/2274 (98%)EPI420114A/mallard/California/2590V/2011 (A/H4N6) segment 2 (PB1)4023.10.000000e+002242/2274 (98%)EPI420087A/mallard/California/2584V/2011 (A/H4N9) segment 2 (PB1)4023.10.000000e+002242/2274 (98%)EPI420080A/mallard/California/2584P/2011 (A/H4N9) segment 2 (PB1)4023.10.000000e+002242/2274 (98%)EPI419939A/mallard/California/2555V/2011 (A/H11N9) segment 2 (PB1)4023.10.000000e+002242/2274 (98%)EPI419916A/mallard/California/2555P/2011 (A/H11N9) segment 2 (PB1)4023.10.000000e+002242/2274 (98%)EPI419807A/mallard/California/2531V/2011 (A/H5N1) segment 2 (PB1)4023.10.000000e+002242/2274 (98%)EPI419794A/mallard/California/2531P/2011 (A/H5N1) segment 2 (PB1)4023.10.000000e+002242/2274 (98%)EPI419786A/mallard/California/2527V/2011 (A/H5N1) segment 2 (PB1)4023.10.000000e+002242/2274 (98%)EPI387271A/northern shoveler/California/3628/2011 (A/H10) segment 2 (PB1)4023.10.000000e+002242/2274 (98%)EPI527489A/blue-winged teal/TX/AI13-1028/2013 (A/H14N5) segment 2 (PB1)4017.60.000000e+002241/2274 (98%)EPI420128A/mallard/California/2594V/2011 (A/H4N6) segment 2 (PB1)4017.60.000000e+002241/2274 (98%)EPI420121A/mallard/California/2594P/2011 (A/H4N6) segment 2 (PB1)4017.60.000000e+002241/2274 (98%)EPI420101A/mallard/California/2589V/2011 (A/H4N1) segment 2 (PB1)4017.60.000000e+002241/2274 (98%)EPI420094A/mallard/California/2589P/2011 (A/H4N1) segment 2 (PB1)4017.60.000000e+002241/2274 (98%)EPI419855A/mallard/California/2536V/2011 (A/H5N1) segment 2 (PB1)4017.60.000000e+002241/2274 (98%)EPI419821A/mallard/California/2533V/2011 (A/H4N6) segment 2 (PB1)4017.60.000000e+002241/2274 (98%)EPI419779A/mallard/California/2525P/2011 (A/H4N6) segment 2 (PB1)4017.60.000000e+002241/2274 (98%)EPI418440A/mallard/California/2525V/2011 (A/H0) segment 2 (PB1)4017.60.000000e+002241/2274 (98%)EPI616276A/mallard/Ohio/12OS2351/2012 (A/H3N6) segment 2 (PB1)4012.00.000000e+002240/2274 (98%)EPI616160A/American green-winged teal/Ohio/12OS2128/2012 (A/H6N5) segment 2 (PB1)4012.00.000000e+002240/2274 (98%)EPI531395A/blue-winged teal/Guatemala/CIP049H105-15/2011 (A/H14N3) segment 2 (PB1)4012.00.000000e+002240/2274 (98%)EPI531387A/blue-winged teal/Guatemala/CIP049H106-62/2011 (A/H14N6) segment 2 (PB1)4012.00.000000e+002240/2274 (98%)EPI513151A/northern shoveler/Wisconsin/11OS4631/2011 (A/H0) segment 2 (PB1)4012.00.000000e+002240/2274 (98%)EPI512252A/northern shoveler/Mississippi/12OS231/2012 (A/H0) segment 2 (PB1)4012.00.000000e+002240/2274 (98%)EPI449635A/mallard/Minnesota/Sg-01034/2008 (A/H11N2) segment 2 (PB1)4012.00.000000e+002240/2274 (98%)EPI420214A/green-winged teal/California/123/2012 (A/H1N1) segment 2 (PB1)4012.00.000000e+002240/2274 (98%)EPI419981A/mallard/California/2566P/2011 (A/H4N8) segment 2 (PB1)4012.00.000000e+002240/2274 (98%)EPI419974A/mallard/California/2563V/2011 (A/H4N6) segment 2 (PB1)4012.00.000000e+002240/2274 (98%)EPI419967A/mallard/California/2563P/2011 (A/H4N6) segment 2 (PB1)4012.00.000000e+002240/2274 (98%)EPI614841A/mallard/Ohio/12OS5400/2013 (A/H0) segment 2 (PB1)4006.50.000000e+002239/2274 (98%)EPI549555A/blue-winged teal/TX/AI13-1009/2013 (A/H11N3) segment 2 (PB1)4006.50.000000e+002239/2274 (98%)EPI512871A/northern pintail/Wisconsin/11OS3299/2011 (A/H4N6) segment 2 (PB1)4006.50.000000e+002239/2274 (98%)EPI512587A/American green-winged teal/Mississippi/11OS5869/2011 (A/H4N6) segment 2 (PB1)4006.50.000000e+002239/2274 (98%)EPI333682A/mallard/Ohio/1695/2009 (A/H4N6) segment 2 (PB1)4006.50.000000e+002239/2274 (98%)EPI617004A/mallard/Alberta/192/2010 (A/H7N3) segment 2 (PB1)4001.00.000000e+002238/2274 (98%)EPI616992A/mallard/Alberta/167/2010 (A/H7N3) segment 2 (PB1)4001.00.000000e+002238/2274 (98%)EPI616341A/mallard/Missouri/12OS5759/2012 (A/H11N9) segment 2 (PB1)4001.00.000000e+002238/2274 (98%)
niman Posted July 2, 2015 Author Report Posted July 2, 2015 AlignSegment-IDNameScoreE-ValueIdentityEPI620398A/turkey/Iowa/11762-1/2015 (A/H5N2) segment 3 (PA)3973.30.000000e+002151/2151 (100%)EPI620404A/chicken/Iowa/14399-4/2015 (A/H5N2) segment 3 (PA)3962.20.000000e+002149/2151 (99%)EPI620403A/chicken/Iowa/14322-6/2015 (A/H5N2) segment 3 (PA)3962.20.000000e+002149/2151 (99%)EPI620402A/turkey/Iowa/14318-1/2015 (A/H5N2) segment 3 (PA)3962.20.000000e+002149/2151 (99%)EPI620401A/turkey/Iowa/14319-1/2015 (A/H5N2) segment 3 (PA)3962.20.000000e+002149/2151 (99%)EPI620400A/chicken/Iowa/13542-2/2015 (A/H5N2) segment 3 (PA)3962.20.000000e+002149/2151 (99%)EPI587639A/chicken/Iowa/04-20/2015 (A/H5N2) segment 3 (PA)3962.20.000000e+002149/2151 (99%)EPI620399A/turkey/Iowa/13541-1/2015 (A/H5N2) segment 3 (PA)3951.10.000000e+002147/2151 (99%)EPI590476A/turkey/Minnesota/9845-4/2015 (A/H5N2) segment 3 (PA)3951.10.000000e+002147/2151 (99%)EPI590475A/chicken/Kansas/8395-3/2015 (A/H5N2) segment 3 (PA)3951.10.000000e+002147/2151 (99%)EPI590472A/turkey/Minnesota/7172-1/2015 (A/H5N2) segment 3 (PA)3951.10.000000e+002147/2151 (99%)EPI590469A/turkey/Minnesota/9892-2/2015 (A/H5N2) segment 3 (PA)3951.10.000000e+002147/2151 (99%)EPI590473A/turkey/Missouri/7458-1/2015 (A/H5N2) segment 3 (PA)3945.60.000000e+002146/2151 (99%)EPI569362A/domestic duck/Washington/61-16/2014 (A/H5N2) segment 3 (PA)3940.00.000000e+002145/2151 (99%)EPI569360A/chicken/Washington/61-9/2014 (A/H5N2) segment 3 (PA)3940.00.000000e+002145/2151 (99%)EPI590471A/chicken/Oregon/A01819044/2015 (A/H5N2) segment 3 (PA)3934.50.000000e+002144/2151 (99%)EPI573280A/turkey/Washington/61-22/2014 (A/H5N2) segment 3 (PA)3934.50.000000e+002144/2151 (99%)EPI590474A/turkey/Arkansas/7791-1/2015 (A/H5N2) segment 3 (PA)3928.90.000000e+002143/2151 (99%)EPI586557A/chicken/BC/FAV25/2014 (A/H5N2) segment 3 (PA)3928.90.000000e+002143/2151 (99%)EPI586541A/chicken/BC/FAV23/2014 (A/H5N2) segment 3 (PA)3928.90.000000e+002143/2151 (99%)EPI586525A/chicken/BC/FAV21/2014 (A/H5N2) segment 3 (PA)3928.90.000000e+002143/2151 (99%)EPI586508A/poultry/BC/FAV19/2014 (A/H5N2) segment 3 (PA)3928.90.000000e+002143/2151 (99%)EPI585107A/pheasant/Washington/3147-2/2015 (A/H5N2) segment 3 (PA)3928.90.000000e+002143/2151 (99%)EPI569382A/Northern pintail/Washington/40964/2014 (A/H5N2) segment 3 (PA)3928.90.000000e+002143/2151 (99%)EPI586533A/chicken/BC/FAV22/2014 (A/H5N2) segment 3 (PA)3923.40.000000e+002142/2151 (99%)EPI586517A/chicken/BC/FAV20/2014 (A/H5N2) segment 3 (PA)3923.40.000000e+002142/2151 (99%)EPI586500A/poultry/BC/FAV17/2014 (A/H5N2) segment 3 (PA)3923.40.000000e+002142/2151 (99%)EPI584078A/turkey/BC/FAV14/2014 (A/H5N2) segment 3 (PA)3923.40.000000e+002142/2151 (99%)EPI576173A/chicken/BC/FAV8/2014 (A/H5N2) segment 3 (PA)3923.40.000000e+002142/2151 (99%)EPI590470A/chicken/Washington/3490-18/2015 (A/H5N2) segment 3 (PA)3917.90.000000e+002141/2151 (99%)EPI586549A/chicken/BC/FAV24/2014 (A/H5N2) segment 3 (PA)3917.90.000000e+002141/2151 (99%)EPI586492A/poultry/BC/FAV15/2014 (A/H5N2) segment 3 (PA)3917.90.000000e+002141/2151 (99%)EPI573292A/turkey/BC/FAV10/2014 (A/H5N2) segment 3 (PA)3917.90.000000e+002141/2151 (99%)EPI576174A/chicken/BC/FAV9/2014 (A/H5N2) segment 3 (PA)3912.30.000000e+002140/2151 (99%)EPI587520A/American wigeon/BC/050-31/2015 (A/H5N8) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI585103A/turkey/California/K1500169-1.2/2015 (A/H5N8) segment 3 (PA)3901.20.000000e+002138/2151 (99%)EPI569389A/gyrfalcon/Washington/41088-6/2014 (A/H5N8) segment 3 (PA)3895.70.000000e+002137/2151 (99%)EPI569370A/guinea fowl/Oregon/41613-1/2014 (A/H5N8) segment 3 (PA)3895.70.000000e+002137/2151 (99%)EPI569368A/chicken/Oregon/41613-2/2014 (A/H5N8) segment 3 (PA)3895.70.000000e+002137/2151 (99%)EPI553207A/crane/Kagoshima/KU1/2014 (A/H5N8) segment 3 (PA)3873.50.000000e+002133/2151 (99%)EPI588975A/duck/Taiwan/a068/2015 (A/H5N8) segment 3 (PA)3868.00.000000e+002130/2148 (99%)EPI588967A/chicken/Taiwan/a174/2015 (A/H5N3) segment 3 (PA)3868.00.000000e+002130/2148 (99%)EPI561686A/common teal/Korea/H455-30/2014 (A/H5N8) segment 3 (PA)3868.00.000000e+002132/2151 (99%)EPI588951A/goose/Taiwan/a015/2015 (A/H5N8) segment 3 (PA)3862.50.000000e+002130/2149 (99%)EPI585536A/baikal teal/Korea/2414/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI585535A/baikal teal/Korea/2406/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI585531A/baikal teal/Korea/1458/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI585530A/baikal teal/Korea/1457/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI585528A/baikal teal/Korea/1454/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI585525A/baikal teal/Korea/1448/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI585524A/baikal teal/Korea/1447/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI585523A/baikal teal/Korea/1446/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI573637A/crane/Kagoshima/KU13/2014(H5N8) (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI561712A/bean goose/Korea/H40/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI561643A/tundra swan/Korea/H411/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI561583A/broiler duck/Korea/H133/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI561537A/Baikal teal/Korea/H84/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI561534A/Baikal teal/Korea/H68/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI561502A/Baikal teal/Korea/H66/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI561500A/Baikal teal/Korea/H62/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI561338A/broiler duck/Korea/H49/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI561334A/broiler duck/Korea/H47/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI509694A/baikal teal/Korea/Donglim3/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI509693A/broiler duck/Korea/Buan2/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI585538A/baikal teal/Korea/2417/2014 (A/H5N8) segment 3 (PA)3856.90.000000e+002130/2151 (99%)EPI585537A/baikal teal/Korea/2416/2014 (A/H5N8) segment 3 (PA)3856.90.000000e+002130/2151 (99%)EPI585533A/baikal teal/Korea/2402/2014 (A/H5N8) segment 3 (PA)3856.90.000000e+002130/2151 (99%)EPI585532A/baikal teal/Korea/2399/2014 (A/H5N8) segment 3 (PA)3856.90.000000e+002130/2151 (99%)EPI585529A/baikal teal/Korea/1456/2014 (A/H5N8) segment 3 (PA)3856.90.000000e+002130/2151 (99%)EPI561687A/spot-billed duck/Korea/H455-42/2014 (A/H5N8) segment 3 (PA)3856.90.000000e+002130/2151 (99%)EPI561642A/bean goose/Korea/H328/2014 (A/H5N8) segment 3 (PA)3856.90.000000e+002130/2151 (99%)EPI561640A/Korean native chicken/Korea/H257/2014 (A/H5N8) segment 3 (PA)3856.90.000000e+002130/2151 (99%)EPI561588A/white-fronted goose/Korea/H231/2014 (A/H5N8) segment 3 (PA)3856.90.000000e+002130/2151 (99%)EPI561587A/mallard/Korea/H207/2014 (A/H5N8) segment 3 (PA)3856.90.000000e+002130/2151 (99%)EPI561586A/breeder duck/Korea/H200/2014 (A/H5N8) segment 3 (PA)3856.90.000000e+002130/2151 (99%)EPI561584A/broiler duck/Korea/H145/2014 (A/H5N8) segment 3 (PA)3856.90.000000e+002130/2151 (99%)EPI561582A/breeder duck/Korea/H128/2014 (A/H5N8) segment 3 (PA)3856.90.000000e+002130/2151 (99%)EPI561501A/broiler duck/Korea/H65/2014 (A/H5N8) segment 3 (PA)3856.90.000000e+002130/2151 (99%)EPI561335A/broiler duck/Korea/H48/2014 (A/H5N8) segment 3 (PA)3856.90.000000e+002130/2151 (99%)EPI561333A/Baikal teal/Korea/H41/2014 (A/H5N8) segment 3 (PA)3856.90.000000e+002130/2151 (99%)EPI561193A/broiler duck/Korea/H31/2014 (A/H5N8) segment 3 (PA)3856.90.000000e+002130/2151 (99%)EPI561192A/broiler duck/Korea/H29/2014 (A/H5N8) segment 3 (PA)3856.90.000000e+002130/2151 (99%)EPI585534A/baikal teal/Korea/2403/2014 (A/H5N8) segment 3 (PA)3851.40.000000e+002129/2151 (98%)EPI585527A/baikal teal/Korea/1452/2014 (A/H5N8) segment 3 (PA)3851.40.000000e+002130/2152 (98%)EPI585526A/baikal teal/Korea/1449/2014 (A/H5N8) segment 3 (PA)3851.40.000000e+002129/2151 (98%)EPI585522A/baikal teal/Korea/1445/2014 (A/H5N8) segment 3 (PA)3851.40.000000e+002129/2151 (98%)EPI585521A/baikal teal/Korea/1441/2014 (A/H5N8) segment 3 (PA)3851.40.000000e+002129/2151 (98%)EPI585520A/baikal teal/Korea/1437/2014 (A/H5N8) segment 3 (PA)3851.40.000000e+002129/2151 (98%)EPI561641A/mallard/Korea/H297/2014 (A/H5N8) segment 3 (PA)3851.40.000000e+002129/2151 (98%)EPI561639A/breeder chicken/Korea/H250/2014 (A/H5N8) segment 3 (PA)3851.40.000000e+002129/2151 (98%)EPI561585A/breeder duck/Korea/H158/2014 (A/H5N8) segment 3 (PA)3851.40.000000e+002129/2151 (98%)EPI561539A/breeder chicken/Korea/H122/2014 (A/H5N8) segment 3 (PA)3851.40.000000e+002129/2151 (98%)EPI561538A/Baikal teal/Korea/H96/2014 (A/H5N8) segment 3 (PA)3851.40.000000e+002129/2151 (98%)EPI561536A/Coot/Korea/H81/2014 (A/H5N8) segment 3 (PA)3851.40.000000e+002129/2151 (98%)EPI561535A/Baikal teal/Korea/H80/2014 (A/H5N8) segment 3 (PA)3851.40.000000e+002129/2151 (98%)EPI561499A/bean goose/Korea/H53/2014 (A/H5N8) segment 3 (PA)3851.40.000000e+002129/2151 (98%)EPI561184A/waterfowl/Korea/S005/2014 (A/H5N8) segment 3 (PA)3851.40.000000e+002129/2151 (98%)EPI573645A/crane/Kagoshima/KU21/2014(H5N8) (A/H5N8) segment 3 (PA)3845.80.000000e+002128/2151 (98%)EPI561638A/breeder duck/Korea/H249/2014 (A/H5N8) segment 3 (PA)3845.80.000000e+002128/2151 (98%)EPI542618A/mallard/Korea/W452/2014 (A/H5N8) segment 3 (PA)3845.80.000000e+002128/2151 (98%)
niman Posted July 2, 2015 Author Report Posted July 2, 2015 AlignSegment-IDNameScoreE-ValueIdentityEPI620409A/turkey/Iowa/11762-1/2015 (A/H5N2) segment 5 (NP)2765.60.000000e+001497/1497 (100%)EPI590741A/turkey/Minnesota/9845-4/2015 (A/H5N2) segment 5 (NP)2760.00.000000e+001496/1497 (99%)EPI620458A/chicken/Iowa/14589-1/2015 (A/H5N2) segment 5 (NP)2754.50.000000e+001495/1497 (99%)EPI620451A/chicken/Iowa/14399-4/2015 (A/H5N2) segment 5 (NP)2754.50.000000e+001495/1497 (99%)EPI620437A/turkey/Iowa/14319-1/2015 (A/H5N2) segment 5 (NP)2754.50.000000e+001495/1497 (99%)EPI620430A/turkey/Iowa/14318-1/2015 (A/H5N2) segment 5 (NP)2754.50.000000e+001495/1497 (99%)EPI620423A/chicken/Iowa/13542-2/2015 (A/H5N2) segment 5 (NP)2754.50.000000e+001495/1497 (99%)EPI620416A/turkey/Iowa/13541-1/2015 (A/H5N2) segment 5 (NP)2754.50.000000e+001495/1497 (99%)EPI590720A/turkey/Missouri/7458-1/2015 (A/H5N2) segment 5 (NP)2754.50.000000e+001495/1497 (99%)EPI590713A/turkey/Minnesota/7172-1/2015 (A/H5N2) segment 5 (NP)2754.50.000000e+001495/1497 (99%)EPI573299A/turkey/BC/FAV10/2014 (A/H5N2) segment 5 (NP)2754.50.000000e+001495/1497 (99%)EPI620444A/chicken/Iowa/14322-6/2015 (A/H5N2) segment 5 (NP)2748.90.000000e+001494/1497 (99%)EPI590700A/chicken/Oregon/A01819044/2015 (A/H5N2) segment 5 (NP)2748.90.000000e+001494/1497 (99%)EPI590686A/turkey/Minnesota/9892-2/2015 (A/H5N2) segment 5 (NP)2748.90.000000e+001494/1497 (99%)EPI587634A/chicken/Iowa/04-20/2015 (A/H5N2) segment 5 (NP)2748.90.000000e+001494/1497 (99%)EPI586527A/chicken/BC/FAV21/2014 (A/H5N2) segment 5 (NP)2748.90.000000e+001494/1497 (99%)EPI586519A/chicken/BC/FAV20/2014 (A/H5N2) segment 5 (NP)2748.90.000000e+001494/1497 (99%)EPI586502A/poultry/BC/FAV17/2014 (A/H5N2) segment 5 (NP)2748.90.000000e+001494/1497 (99%)EPI576471A/chicken/BC/FAV8/2014 (A/H5N2) segment 5 (NP)2748.90.000000e+001494/1497 (99%)EPI569384A/Northern pintail/Washington/40964/2014 (A/H5N2) segment 5 (NP)2748.90.000000e+001494/1497 (99%)EPI569365A/turkey/Washington/61-22/2014 (A/H5N2) segment 5 (NP)2748.90.000000e+001494/1497 (99%)EPI586559A/chicken/BC/FAV25/2014 (A/H5N2) segment 5 (NP)2743.40.000000e+001493/1497 (99%)EPI586543A/chicken/BC/FAV23/2014 (A/H5N2) segment 5 (NP)2743.40.000000e+001493/1497 (99%)EPI586535A/chicken/BC/FAV22/2014 (A/H5N2) segment 5 (NP)2743.40.000000e+001493/1497 (99%)EPI586510A/poultry/BC/FAV19/2014 (A/H5N2) segment 5 (NP)2743.40.000000e+001493/1497 (99%)EPI586494A/poultry/BC/FAV15/2014 (A/H5N2) segment 5 (NP)2743.40.000000e+001493/1497 (99%)EPI584080A/turkey/BC/FAV14/2014 (A/H5N2) segment 5 (NP)2743.40.000000e+001493/1497 (99%)EPI576478A/chicken/BC/FAV9/2014 (A/H5N2) segment 5 (NP)2743.40.000000e+001493/1497 (99%)EPI590734A/chicken/Kansas/8395-3/2015 (A/H5N2) segment 5 (NP)2737.90.000000e+001492/1497 (99%)EPI586551A/chicken/BC/FAV24/2014 (A/H5N2) segment 5 (NP)2737.90.000000e+001492/1497 (99%)EPI573277A/domestic duck/Washington/61-16/2014 (A/H5N2) segment 5 (NP)2737.90.000000e+001492/1497 (99%)EPI573272A/chicken/Washington/61-9/2014 (A/H5N2) segment 5 (NP)2737.90.000000e+001492/1497 (99%)EPI590727A/turkey/Arkansas/7791-1/2015 (A/H5N2) segment 5 (NP)2732.30.000000e+001491/1497 (99%)EPI590693A/chicken/Washington/3490-18/2015 (A/H5N2) segment 5 (NP)2732.30.000000e+001491/1497 (99%)EPI585093A/pheasant/Washington/3147-2/2015 (A/H5N2) segment 5 (NP)2732.30.000000e+001491/1497 (99%)EPI526421A/American green-winged teal/Ohio/13OS2086/2013 (A/H6N8) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI526348A/American green-winged teal/Ohio/13OS2084/2013 (A/H6N8) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI616371A/blue-winged teal/Illinois/12OS2929/2012 (A/H3N8) segment 5 (NP)2671.40.000000e+001480/1497 (98%)EPI513134A/mallard/Wisconsin/11OS4085/2011 (A/H0) segment 5 (NP)2665.80.000000e+001479/1497 (98%)EPI512973A/blue-winged teal/Wisconsin/11OS3052/2011 (A/H3N2) segment 5 (NP)2665.80.000000e+001479/1497 (98%)EPI512391A/northern pintail/Illinois/11OS4796/2011 (A/H5N3) segment 5 (NP)2665.80.000000e+001479/1497 (98%)EPI512368A/northern shoveler/Illinois/11OS4707/2011 (A/H4N6) segment 5 (NP)2665.80.000000e+001479/1497 (98%)EPI616435A/mallard/Illinois/12OS5130/2012 (A/H1N1) segment 5 (NP)2660.30.000000e+001478/1497 (98%)EPI616391A/northern shoveler/Illinois/12OS5138/2012 (A/H1N1) segment 5 (NP)2660.30.000000e+001478/1497 (98%)EPI513005A/northern shoveler/Wisconsin/11OS4110/2011 (A/H4N6) segment 5 (NP)2660.30.000000e+001478/1497 (98%)EPI512353A/mallard/Illinois/11OS4420/2011 (A/H2N3) segment 5 (NP)2660.30.000000e+001478/1497 (98%)EPI616291A/blue-winged teal/Ohio/12OS4593/2012 (A/H4N6) segment 5 (NP)2654.80.000000e+001477/1497 (98%)EPI526332A/American green-winged teal/Ohio/13OS2060/2013 (A/H6N8) segment 5 (NP)2654.80.000000e+001477/1497 (98%)EPI512695A/mallard/Wisconsin/11OS4309/2011 (A/H4N6) segment 5 (NP)2654.80.000000e+001477/1497 (98%)EPI616346A/American green-winged teal/Mississippi/12OS5061/2012 (A/H5N2) segment 5 (NP)2649.20.000000e+001476/1497 (98%)EPI512616A/mallard/Wisconsin/11OS4310/2011 (A/H4N6) segment 5 (NP)2649.20.000000e+001476/1497 (98%)EPI418744A/wood duck/Wisconsin/10OS2778/2010 (A/H3N8) segment 5 (NP)2649.20.000000e+001476/1497 (98%)EPI418737A/mallard/Wisconsin/10OS2773/2010 (A/H3N8) segment 5 (NP)2649.20.000000e+001476/1497 (98%)EPI616351A/blue-winged teal/Illinois/12OS2986/2012 (A/H3N8) segment 5 (NP)2643.70.000000e+001475/1497 (98%)EPI616186A/blue-winged teal/Ohio/12OS2229/2012 (A/H3N6) segment 5 (NP)2643.70.000000e+001475/1497 (98%)EPI596207A/mallard/Maryland/13OS3035/2014 (A/H10N7) segment 5 (NP)2643.70.000000e+001475/1497 (98%)EPI585180A/redhead/Ohio/13OS0406/2013 (A/H7N3) segment 5 (NP)2643.70.000000e+001475/1497 (98%)EPI512928A/mallard/Illinois/11OS4121/2011 (A/H6N2) segment 5 (NP)2643.70.000000e+001475/1497 (98%)EPI616467A/mallard/Illinois/12OS5080/2012 (A/H5N1) segment 5 (NP)2638.10.000000e+001474/1497 (98%)EPI512749A/northern shoveler/Wisconsin/11OS3013/2011 (A/H4N8) segment 5 (NP)2638.10.000000e+001474/1497 (98%)EPI449581A/green-winged teal/Minnesota/Sg-01000/2008 (A/H3N6) segment 5 (NP)2638.10.000000e+001474/1497 (98%)EPI449553A/mallard/Minnesota/Sg-00930/2008 (A/H11N9) segment 5 (NP)2638.10.000000e+001474/1497 (98%)EPI419628A/mallard/Missouri/10MO084/2010 (A/H5N9) segment 5 (NP)2638.10.000000e+001474/1497 (98%)EPI594842A/mallard/Maryland/13OS3019/2014 (A/H0) segment 5 (NP)2632.60.000000e+001473/1497 (98%)EPI475450A/northern shoveler/Minnesota/Sg-00655/2008 (A/H1N1) segment 5 (NP)2632.60.000000e+001473/1497 (98%)EPI468600A/northern shoveler/Minnesota/Sg-00651/2008 (A/H1N1) segment 5 (NP)2632.60.000000e+001473/1497 (98%)EPI450064A/red-necked grebe/Minnesota/AI10-2528/2010 (A/H4N8) segment 5 (NP)2632.60.000000e+001473/1497 (98%)EPI449397A/northern shoveler/Minnesota/Sg-00665/2008 (A/H0) segment 5 (NP)2632.60.000000e+001473/1497 (98%)EPI448589A/mallard/Minnesota/Sg-00620/2008 (A/H1N1) segment 5 (NP)2632.60.000000e+001473/1497 (98%)EPI419491A/northern shoverl/Mississippi/11OS145/2011 (A/H7N9) segment 5 (NP)2632.60.000000e+001473/1497 (98%)EPI418903A/blue-winged teal/Wisconsin/10OS2862/2010 (A/H3N2) segment 5 (NP)2632.60.000000e+001473/1497 (98%)EPI334171A/mallard/Illinois/3974/2009 (A/H5N2) segment 5 (NP)2632.60.000000e+001473/1497 (98%)EPI468579A/mallard/Minnesota/Sg-00627/2008 (A/H1N1) segment 5 (NP)2627.10.000000e+001472/1497 (98%)EPI468414A/mallard/Minnesota/Sg-00628/2008 (A/H1N1) segment 5 (NP)2627.10.000000e+001472/1497 (98%)EPI433780A/blue-winged teal/Nova Scotia/00067/2010 (A/H0) segment 5 (NP)2627.10.000000e+001472/1497 (98%)EPI419506A/American green-winged teal/Mississippi/11OS247/2011 (A/H0) segment 5 (NP)2627.10.000000e+001472/1497 (98%)EPI334289A/blue-winged teal/Wisconsin/2753/2009 (A/H4N6) segment 5 (NP)2627.10.000000e+001472/1497 (98%)EPI328603A/northern shoveler/California/9079/2008 (A/H4N4) segment 5 (NP)2627.10.000000e+001472/1497 (98%)EPI328067A/northern shoveler/California/10024/2008 (A/H4N4) segment 5 (NP)2627.10.000000e+001472/1497 (98%)EPI616200A/blue-winged teal/Ohio/12OS2244/2012 (A/H4N6) segment 5 (NP)2621.50.000000e+001471/1497 (98%)EPI595979A/American black duck/Maryland/11OS3978/2012 (A/H2N1) segment 5 (NP)2621.50.000000e+001471/1497 (98%)EPI595972A/American black duck/Maryland/11OS3898/2012 (A/H2N1) segment 5 (NP)2621.50.000000e+001471/1497 (98%)EPI595958A/mallard/Maryland/11OS3829/2012 (A/H2N2) segment 5 (NP)2621.50.000000e+001471/1497 (98%)EPI449387A/mallard/Minnesota/Sg-0617/2008 (A/H1N1) segment 5 (NP)2621.50.000000e+001471/1497 (98%)EPI419169A/mallard/Wisconsin/10OS3866/2010 (A/H3N6) segment 5 (NP)2621.50.000000e+001471/1497 (98%)EPI616227A/blue-winged teal/Ohio/12OS2123/2012 (A/H3N2) segment 5 (NP)2616.00.000000e+001470/1497 (98%)EPI595965A/mallard/Maryland/11OS3833/2012 (A/H2N1) segment 5 (NP)2616.00.000000e+001470/1497 (98%)EPI486895A/mallard/California/3471/2012 (A/H4N6) segment 5 (NP)2616.00.000000e+001470/1497 (98%)EPI328083A/northern shoveler/California/9267/2008 (A/H4N6) segment 5 (NP)2616.00.000000e+001470/1497 (98%)EPI616113A/blue-winged teal/Ohio/12OS2154/2012 (A/H3N2) segment 5 (NP)2610.40.000000e+001469/1497 (98%)EPI328091A/northern shoveler/California/9228/2008 (A/H4N6) segment 5 (NP)2610.40.000000e+001469/1497 (98%)EPI596179A/mallard/Maryland/12OS565/2012 (A/H2N2) segment 5 (NP)2604.90.000000e+001468/1497 (98%)EPI526489A/blue-winged teal/Iowa/13OS2338/2013 (A/H4N6) segment 5 (NP)2604.90.000000e+001468/1497 (98%)EPI513149A/northern shoveler/Wisconsin/11OS4631/2011 (A/H0) segment 5 (NP)2604.90.000000e+001468/1497 (98%)EPI387206A/mallard/California/3134/2010 (A/H1N1) segment 5 (NP)2599.40.000000e+001467/1497 (97%)EPI342993A/mallard/Alberta/507/2008 (A/H3N8) segment 5 (NP)2599.40.000000e+001467/1497 (97%)EPI327399A/ring-necked duck/Ontario/15530/2005 (A/H3N2) segment 5 (NP)2599.40.000000e+001467/1497 (97%)EPI596165A/environment/Maryland/12OS1510/2012 (A/H3N6) segment 5 (NP)2593.80.000000e+001466/1497 (97%)EPI596144A/environment/Maryland/12OS1505/2012 (A/H3N6) segment 5 (NP)2593.80.000000e+001466/1497 (97%)EPI596137A/environment/Maryland/12OS1502/2012 (A/H3N6) segment 5 (NP)2593.80.000000e+001466/1497 (97%)
niman Posted July 2, 2015 Author Report Posted July 2, 2015 AlignSegment-IDNameScoreE-ValueIdentityEPI620461A/chicken/Iowa/14589-1/2015 (A/H5N2) segment 8 (NS)1548.60.000000e+00838/838 (100%)EPI620447A/chicken/Iowa/14322-6/2015 (A/H5N2) segment 8 (NS)1548.60.000000e+00838/838 (100%)EPI620440A/turkey/Iowa/14319-1/2015 (A/H5N2) segment 8 (NS)1548.60.000000e+00838/838 (100%)EPI620433A/turkey/Iowa/14318-1/2015 (A/H5N2) segment 8 (NS)1548.60.000000e+00838/838 (100%)EPI620426A/chicken/Iowa/13542-2/2015 (A/H5N2) segment 8 (NS)1548.60.000000e+00838/838 (100%)EPI620419A/turkey/Iowa/13541-1/2015 (A/H5N2) segment 8 (NS)1548.60.000000e+00838/838 (100%)EPI620412A/turkey/Iowa/11762-1/2015 (A/H5N2) segment 8 (NS)1548.60.000000e+00838/838 (100%)EPI590689A/turkey/Minnesota/9892-2/2015 (A/H5N2) segment 8 (NS)1548.60.000000e+00838/838 (100%)EPI587637A/chicken/Iowa/04-20/2015 (A/H5N2) segment 8 (NS)1548.60.000000e+00838/838 (100%)EPI620454A/chicken/Iowa/14399-4/2015 (A/H5N2) segment 8 (NS)1543.10.000000e+00837/838 (99%)EPI590744A/turkey/Minnesota/9845-4/2015 (A/H5N2) segment 8 (NS)1543.10.000000e+00837/838 (99%)EPI590737A/chicken/Kansas/8395-3/2015 (A/H5N2) segment 8 (NS)1543.10.000000e+00837/838 (99%)EPI590723A/turkey/Missouri/7458-1/2015 (A/H5N2) segment 8 (NS)1543.10.000000e+00837/838 (99%)EPI590716A/turkey/Minnesota/7172-1/2015 (A/H5N2) segment 8 (NS)1543.10.000000e+00837/838 (99%)EPI569366A/turkey/Washington/61-22/2014 (A/H5N2) segment 8 (NS)1543.10.000000e+00837/838 (99%)EPI586554A/chicken/BC/FAV24/2014 (A/H5N2) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI586538A/chicken/BC/FAV22/2014 (A/H5N2) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI586522A/chicken/BC/FAV20/2014 (A/H5N2) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI586514A/poultry/BC/FAV19/2014 (A/H5N2) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI585671A/baikal teal/Korea/2417/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI585670A/baikal teal/Korea/2416/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI585669A/baikal teal/Korea/2414/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI585667A/baikal teal/Korea/2403/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI585666A/baikal teal/Korea/2402/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI585664A/baikal teal/Korea/1458/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI585663A/baikal teal/Korea/1457/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI585660A/baikal teal/Korea/1452/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI585657A/baikal teal/Korea/1447/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI585656A/baikal teal/Korea/1446/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI585655A/baikal teal/Korea/1445/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI585653A/baikal teal/Korea/1437/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI585096A/pheasant/Washington/3147-2/2015 (A/H5N2) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI576474A/chicken/BC/FAV8/2014 (A/H5N2) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI569394A/gyrfalcon/Washington/41088-6/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI569387A/Northern pintail/Washington/40964/2014 (A/H5N2) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI569363A/domestic duck/Washington/61-16/2014 (A/H5N2) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI569361A/chicken/Washington/61-9/2014 (A/H5N2) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI568703A/guinea fowl/Oregon/41613-1/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI568700A/chicken/Oregon/41613-2/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI561713A/broiler duck/Korea/H31/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI561701A/spot-billed duck/Korea/H455-42/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI561694A/common teal/Korea/H455-30/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI561685A/tundra swan/Korea/H411/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI561678A/bean goose/Korea/H328/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI561671A/mallard/Korea/H297/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI561664A/Korean native chicken/Korea/H257/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI561657A/breeder chicken/Korea/H250/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI561630A/mallard/Korea/H207/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI561623A/breeder duck/Korea/H200/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI561574A/Baikal teal/Korea/H96/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI561560A/Coot/Korea/H81/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI561553A/Baikal teal/Korea/H80/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI561533A/Baikal teal/Korea/H66/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI561519A/Baikal teal/Korea/H62/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI561345A/Baikal teal/Korea/H41/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI561200A/broiler duck/Korea/H29/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI542634A/mallard/Korea/W452/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI509757A/baikal teal/Korea/Donglim3/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI509712A/broiler duck/Korea/Buan2/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI590730A/turkey/Arkansas/7791-1/2015 (A/H5N2) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI590709A/chicken/Oregon/A01819044/2015 (A/H5N2) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI587525A/American wigeon/BC/050-31/2015 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI586562A/chicken/BC/FAV25/2014 (A/H5N2) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI586546A/chicken/BC/FAV23/2014 (A/H5N2) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI586530A/chicken/BC/FAV21/2014 (A/H5N2) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI586505A/poultry/BC/FAV17/2014 (A/H5N2) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI585668A/baikal teal/Korea/2406/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI585665A/baikal teal/Korea/2399/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI585661A/baikal teal/Korea/1454/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI585659A/baikal teal/Korea/1449/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI585658A/baikal teal/Korea/1448/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI585654A/baikal teal/Korea/1441/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI584083A/turkey/BC/FAV14/2014 (A/H5N2) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI561650A/breeder duck/Korea/H249/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI561609A/broiler duck/Korea/H145/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI561602A/broiler duck/Korea/H133/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI561595A/breeder duck/Korea/H128/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI561581A/breeder chicken/Korea/H122/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI561546A/Baikal teal/Korea/H68/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI561364A/bean goose/Korea/H40/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI561357A/broiler duck/Korea/H48/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI561352A/broiler duck/Korea/H47/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI561191A/waterfowl/Korea/S005/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI554604A/turkey/Germany-NI/R3372/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI553471A/wigeon/Sakha/1/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI552750A/turkey/Germany/R2474-L00899/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI548628A/chicken/Netherlands/14015531/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI548428A/turkey/Germany-MV/R2472/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI590696A/chicken/Washington/3490-18/2015 (A/H5N2) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI588956A/goose/Taiwan/a015/2015 (A/H5N8) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI586497A/poultry/BC/FAV15/2014 (A/H5N2) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI585662A/baikal teal/Korea/1456/2014 (A/H5N8) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI576481A/chicken/BC/FAV9/2014 (A/H5N2) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI573642A/crane/Kagoshima/KU13/2014(H5N8) (A/H5N8) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI573302A/turkey/BC/FAV10/2014 (A/H5N2) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI561637A/white-fronted goose/Korea/H231/2014 (A/H5N8) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI561616A/breeder duck/Korea/H158/2014 (A/H5N8) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI561567A/Baikal teal/Korea/H84/2014 (A/H5N8) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI561512A/bean goose/Korea/H53/2014 (A/H5N8) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI558013A/duck/England/36038/14 (A/H5N8) segment 8 (NS)1526.50.000000e+00834/838 (99%)
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