niman Posted January 24, 2017 Report Share Posted January 24, 2017 (edited) State Veterinary Institute Prague Sidlistni has released a full 217 Chicken H5N8 sequence, A/chicken/Czech Republic/206-17_2/2017, at GISAID. Edited January 24, 2017 by niman Link to comment Share on other sites More sharing options...
niman Posted January 24, 2017 Author Report Share Posted January 24, 2017 Isolate name: A/chicken/Czech Republic/206-17_2/2017(H5N8) Isolate ID: EPI_ISL_242817 Passage details/history: Type: A / H5N8 Lineage: Sample information Collection date: 2017-01-06 Host Gallus gallus Additional host information: Domestic status: Domestic Is vaccinated: Location: Czech Republic / South Moravian Region / Okres Breclav Additional location information: Brod nad Dyjí Health status: Dead Specimen source: Organ Strain or commercial product name used for vaccination: Institute information Originating lab: Sample ID given by the sample provider: Address: Submitting lab: State Veterinary Institute Prague Sample ID given by the submitting laboratory: Authors: Nagy,Alexander Address: State Veterinary Institute Prague Sidlistni Prague, Czech Republic Publication Publication In vivo antiviral resistance Phenotype Genotype Unspecified Antiviral resistance tested by experimental procedures Adamantanes: Unknown Oseltamivir: Unknown Zanamivir: Unknown Peramivir: Unknown Other: Unknown Additional information Antigenic characterization: Note: Sequence segment identifier length accession # INSDC Sequence PB2 A/chicken/Czech Republic/206-17_2/2017(H5N8) 2308 EPI887465 PB1 A/chicken/Czech Republic/206-17_2/2017(H5N8) 2309 EPI887466 PA A/chicken/Czech Republic/206-17_2/2017(H5N8) 2200 EPI887467 HA A/chicken/Czech Republic/206-17_2/2017(H5N8) 1742 EPI887468 NP A/chicken/Czech Republic/206-17_2/2017(H5N8) 1529 EPI887469 NA A/chicken/Czech Republic/206-17_2/2017(H5N8) 1425 EPI887470 MP A/chicken/Czech Republic/206-17_2/2017(H5N8) 991 EPI887471 NS A/chicken/Czech Republic/206-17_2/2017(H5N8) 855 EPI887472 Submitter information Submitter: Nagy, Alexander Submission Date: 2017-01-24 Last modifier: Nagy, Alexander Last modified: 2017-01-24 Address: State Veterinary Institute Prague Sidlistni Prague, Czech Republic Link to comment Share on other sites More sharing options...
niman Posted January 24, 2017 Author Report Share Posted January 24, 2017 Align Segment-ID Name Score E-Value Identity EPI887468 A/chicken/Czech Republic/206-17_2/2017(H5N8) (A/H5N8) segment 4 (HA) 3147.8 0.000000e+00 1704/1704 (100%) EPI869931 A/turkey/Poland/83/2016 (A/H5N8) segment 4 (HA) 3125.7 0.000000e+00 1700/1704 (99%) EPI869930 A/turkey/Poland/78/2016 (A/H5N8) segment 4 (HA) 3122.0 0.000000e+00 1699/1704 (99%) EPI869936 A/chicken/Kalmykia/2661/2016 (A/H5N8) segment 4 (HA) 3114.6 0.000000e+00 1698/1704 (99%) EPI864746 A/mute swan/Croatia/85/2016 (A/H5N8) segment 4 (HA) 3109.0 0.000000e+00 1697/1704 (99%) EPI861568 A/mute swan/Croatia/70/2016 (A/H5N8) segment 4 (HA) 3109.0 0.000000e+00 1697/1704 (99%) EPI869924 A/domestic goose/Poland/33/2016 (A/H5N8) segment 4 (HA) 3105.3 0.000000e+00 1696/1704 (99%) EPI869929 A/mute swan/Poland/108/2016 (A/H5N8) segment 4 (HA) 3103.5 0.000000e+00 1696/1704 (99%) EPI861572 A/mute swan/Croatia/78/2016 (A/H5N8) segment 4 (HA) 3103.5 0.000000e+00 1696/1704 (99%) EPI873624 A/mute swan/Croatia/9/2017 (A/H5N8) segment 4 (HA) 3098.0 0.000000e+00 1695/1704 (99%) EPI869938 A/chicken/Astrakhan/3131/2016 (A/H5N8) segment 4 (HA) 3098.0 0.000000e+00 1695/1704 (99%) EPI869809 A/duck/France/161108h/2016 (A/H5N8) segment 4 (HA) 3098.0 0.000000e+00 1695/1704 (99%) EPI869926 A/domestic goose/Poland/72/2016 (A/H5N8) segment 4 (HA) 3094.3 0.000000e+00 1694/1704 (99%) EPI869687 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 4 (HA) 3094.3 0.000000e+00 1694/1704 (99%) EPI881899 A/breeder duck/Croatia/21/2017 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI869940 A/herring gull/Poland/84/2016 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI868848 A/turkey/England/052131/2016 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI861011 A/turkey/Germany-SH/R8595/2016 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI859212 A/tufted_duck/Germany-SH/R8446/2016 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI836614 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI836606 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI823756 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI823748 A/wild duck/Tyva/35/2016 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI823460 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI773757 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1695/1705 (99%) EPI873659 A/Eurasian wigeon/Netherlands/1/2016 (A/H5N8) segment 4 (HA) 3088.7 0.000000e+00 1681/1686 (99%) EPI860393 A/tufted_duck/Germany/AR8444-L01987/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI859650 A/wild duck/Germany-BW/R8455/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI869927 A/chicken/Poland/79A/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI860509 A/tufted duck/Germany-SH/R8444/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI860401 A/tufted_duck/Germany/AR8459-L01988/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI859653 A/tufted_duck/Germany/AR8444-L01986/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI774394 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI774386 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI774310 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI774242 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI774234 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI774121 A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI774113 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI869928 A/chicken/Poland/85A/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI863865 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI861224 A/chicken/Germany-SH/R8758/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI858844 A/painted stork/India/10CA03/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI774475 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI774458 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI774450 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI774402 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI774378 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI774326 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI774318 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI774302 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI774277 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI774267 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI774259 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI774251 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI774226 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI774218 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI774210 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI774201 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI774193 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI774185 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI774176 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI774168 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI774159 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI774150 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI873626 A/mute swan/Croatia/104/2016 (A/H5N8) segment 4 (HA) 3073.9 0.000000e+00 1688/1700 (99%) EPI861012 A/chicken/Germany-MV/R8790/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI858836 A/duck/India/10CA01/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774506 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1691/1705 (99%) EPI774490 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774483 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774434 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774410 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774369 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774335 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774294 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774286 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774142 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774133 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI860231 A/wild duck/Poland/82A/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774466 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI774442 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1690/1705 (99%) EPI774352 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI861222 A/tufted duck/Germany-SN/R8795/2016 (A/H5N8) segment 4 (HA) 3062.9 0.000000e+00 1687/1704 (99%) EPI873212 A/chicken/Croatia/103/2016 (A/H5N8) segment 4 (HA) 3061.0 0.000000e+00 1687/1702 (99%) EPI863857 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI863849 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI863834 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI863826 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI774498 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI774426 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI774361 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI774344 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI703608 A/duck/Eastern China/S1109/2014 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI681300 A/goose/Zhejiang/925104/2014 (A/H5N8) segment 4 (HA) 2987.2 0.000000e+00 1675/1704 (98%) EPI681299 A/goose/Zhejiang/925037/2014 (A/H5N8) segment 4 (HA) 2987.2 0.000000e+00 1675/1704 (98%) EPI703602 A/duck/Eastern China/S0215/2014 (A/H5N8) segment 4 (HA) 2976.1 0.000000e+00 1673/1704 (98%) EPI675774 A/duck/Liaoning/S1001/2014 (A/H5N8) segment 4 (HA) 2976.1 0.000000e+00 1673/1704 (98%) EPI681290 A/goose/Zhejiang/925106/2014 (A/H5N6) segment 4 (HA) 2965.0 0.000000e+00 1671/1704 (98%) EPI509698 A/breeder duck/Korea/Gochang1/2014 (A/H5N8) segment 4 (HA) 2965.0 0.000000e+00 1671/1704 (98%) Link to comment Share on other sites More sharing options...
niman Posted January 24, 2017 Author Report Share Posted January 24, 2017 Align Segment-ID Name Score E-Value Identity EPI887470 A/chicken/Czech Republic/206-17_2/2017(H5N8) (A/H5N8) segment 6 (NA) 2580.9 0.000000e+00 1397/1397 (100%) EPI861569 A/mute swan/Croatia/70/2016 (A/H5N8) segment 6 (NA) 2544.0 0.000000e+00 1389/1395 (99%) EPI869939 A/chicken/Astrakhan/3131/2016 (A/H5N8) segment 6 (NA) 2538.4 0.000000e+00 1388/1395 (99%) EPI869935 A/mute swan/Poland/108/2016 (A/H5N8) segment 6 (NA) 2538.4 0.000000e+00 1388/1395 (99%) EPI869933 A/chicken/Poland/79A/2016 (A/H5N8) segment 6 (NA) 2538.4 0.000000e+00 1388/1395 (99%) EPI869811 A/duck/France/161108h/2016 (A/H5N8) segment 6 (NA) 2538.4 0.000000e+00 1388/1395 (99%) EPI869689 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 6 (NA) 2538.4 0.000000e+00 1388/1395 (99%) EPI881900 A/breeder duck/Croatia/21/2017 (A/H5N8) segment 6 (NA) 2532.9 0.000000e+00 1387/1395 (99%) EPI864747 A/mute swan/Croatia/85/2016 (A/H5N8) segment 6 (NA) 2532.9 0.000000e+00 1387/1395 (99%) EPI861573 A/mute swan/Croatia/78/2016 (A/H5N8) segment 6 (NA) 2532.9 0.000000e+00 1387/1395 (99%) EPI836616 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 6 (NA) 2532.9 0.000000e+00 1387/1395 (99%) EPI836608 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 6 (NA) 2532.9 0.000000e+00 1387/1395 (99%) EPI823758 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 6 (NA) 2532.9 0.000000e+00 1387/1395 (99%) EPI823750 A/wild duck/Tyva/35/2016 (A/H5N8) segment 6 (NA) 2532.9 0.000000e+00 1387/1395 (99%) EPI823462 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 6 (NA) 2532.9 0.000000e+00 1387/1395 (99%) EPI873213 A/chicken/Croatia/103/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1386/1395 (99%) EPI869937 A/chicken/Kalmykia/2661/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1386/1395 (99%) EPI869934 A/chicken/Poland/85A/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1386/1395 (99%) EPI868850 A/turkey/England/052131/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1386/1395 (99%) EPI861014 A/chicken/Germany-SH/R8758/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1386/1395 (99%) EPI861010 A/turkey/Germany-SH/R8595/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1386/1395 (99%) EPI860510 A/tufted duck/Germany-SH/R8444/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1386/1395 (99%) EPI860403 A/tufted_duck/Germany/AR8459-L01988/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1386/1395 (99%) EPI860395 A/tufted_duck/Germany/AR8444-L01987/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1386/1395 (99%) EPI860232 A/wild duck/Poland/82A/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1386/1395 (99%) EPI859655 A/tufted_duck/Germany/AR8444-L01986/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1386/1395 (99%) EPI774500 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1386/1395 (99%) EPI774468 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1386/1395 (99%) EPI774452 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1386/1395 (99%) EPI774444 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1386/1395 (99%) EPI774436 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1386/1395 (99%) EPI774420 A/Bar-headed Goose/Qinghai/BTY18-MU/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1386/1395 (99%) EPI774412 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1386/1395 (99%) EPI774404 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1386/1395 (99%) EPI774396 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1386/1395 (99%) EPI774388 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1386/1395 (99%) EPI774380 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1386/1395 (99%) EPI774371 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1386/1395 (99%) EPI774363 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1386/1395 (99%) EPI774346 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1386/1395 (99%) EPI774337 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1386/1395 (99%) EPI774320 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1386/1395 (99%) EPI774312 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1386/1395 (99%) EPI774304 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1386/1395 (99%) EPI774279 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1386/1395 (99%) EPI774270 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1386/1395 (99%) EPI774261 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1386/1395 (99%) EPI774253 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1386/1395 (99%) EPI774244 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1386/1395 (99%) EPI774195 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1386/1395 (99%) EPI774187 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1386/1395 (99%) EPI774144 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1386/1395 (99%) EPI774136 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1386/1395 (99%) EPI774115 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1386/1395 (99%) EPI859649 A/wild duck/Germany-BW/R8455/2016 (A/H5N8) segment 6 (NA) 2523.6 0.000000e+00 1385/1395 (99%) EPI873627 A/mute swan/Croatia/104/2016 (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1385/1395 (99%) EPI869932 A/domestic goose/Poland/72/2016 (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1385/1395 (99%) EPI869925 A/domestic goose/Poland/33/2016 (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1385/1395 (99%) EPI863867 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1385/1395 (99%) EPI863851 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1385/1395 (99%) EPI863836 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1385/1395 (99%) EPI863828 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1385/1395 (99%) EPI858846 A/painted stork/India/10CA03/2016 (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1385/1395 (99%) EPI774492 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1385/1395 (99%) EPI774484 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1385/1395 (99%) EPI774477 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1386/1396 (99%) EPI774460 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1386/1396 (99%) EPI774354 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1385/1395 (99%) EPI774328 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1385/1395 (99%) EPI774296 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1385/1395 (99%) EPI774212 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1385/1395 (99%) EPI774178 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1385/1395 (99%) EPI774170 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1385/1395 (99%) EPI774161 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1385/1395 (99%) EPI863859 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 6 (NA) 2518.1 0.000000e+00 1384/1395 (99%) EPI873625 A/mute swan/Croatia/9/2017 (A/H5N8) segment 6 (NA) 2516.3 0.000000e+00 1384/1395 (99%) EPI774508 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 6 (NA) 2516.3 0.000000e+00 1384/1395 (99%) EPI774428 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 6 (NA) 2516.3 0.000000e+00 1384/1395 (99%) EPI774288 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 6 (NA) 2516.3 0.000000e+00 1384/1395 (99%) EPI774220 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 6 (NA) 2516.3 0.000000e+00 1384/1395 (99%) EPI774152 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 6 (NA) 2516.3 0.000000e+00 1385/1396 (99%) EPI773759 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 6 (NA) 2516.3 0.000000e+00 1384/1395 (99%) EPI861013 A/chicken/Germany-MV/R8790/2016 (A/H5N8) segment 6 (NA) 2512.6 0.000000e+00 1382/1395 (99%) EPI861015 A/tufted duck/Germany-SN/R8795/2016 (A/H5N8) segment 6 (NA) 2510.7 0.000000e+00 1382/1395 (99%) EPI859213 A/tufted_duck/Germany-SH/R8446/2016 (A/H5N8) segment 6 (NA) 2510.7 0.000000e+00 1383/1395 (99%) EPI774236 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 6 (NA) 2510.7 0.000000e+00 1384/1396 (99%) EPI774228 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 6 (NA) 2505.2 0.000000e+00 1383/1396 (99%) EPI858838 A/duck/India/10CA01/2016 (A/H5N8) segment 6 (NA) 2499.6 0.000000e+00 1381/1395 (98%) EPI774203 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 6 (NA) 2499.6 0.000000e+00 1381/1395 (98%) EPI703648 A/duck/Eastern China/S1109/2014 (A/H5N8) segment 6 (NA) 2477.5 0.000000e+00 1377/1395 (98%) EPI869941 A/herring gull/Poland/84/2016 (A/H5N8) segment 6 (NA) 2453.5 0.000000e+00 1348/1358 (99%) EPI703642 A/duck/Eastern China/S0215/2014 (A/H5N8) segment 6 (NA) 2444.2 0.000000e+00 1371/1395 (98%) EPI681357 A/goose/Zhejiang/925037/2014 (A/H5N8) segment 6 (NA) 2433.2 0.000000e+00 1369/1395 (98%) EPI873660 A/Eurasian wigeon/Netherlands/1/2016 (A/H5N8) segment 6 (NA) 2414.7 0.000000e+00 1332/1345 (99%) EPI681358 A/goose/Zhejiang/925104/2014 (A/H5N8) segment 6 (NA) 2411.0 0.000000e+00 1365/1395 (97%) EPI583873 A/duck/Shaoxing/5240/2013 (A/H0) segment 6 (NA) 2399.9 0.000000e+00 1363/1395 (97%) EPI591884 A/duck/Jiangxi/23970/2013 (A/H0) segment 6 (NA) 2394.4 0.000000e+00 1362/1395 (97%) EPI690794 A/goose/Jiangsu/QD5/2014 (A/H5N8) segment 6 (NA) 2388.8 0.000000e+00 1361/1395 (97%) EPI561493 A/Baikal teal/Korea/H52/2014 (A/H5N8) segment 6 (NA) 2388.8 0.000000e+00 1361/1395 (97%) EPI530990 A/duck/Zhejiang/6D18/2013 (A/H5N8) segment 6 (NA) 2388.8 0.000000e+00 1362/1396 (97% Link to comment Share on other sites More sharing options...
niman Posted January 24, 2017 Author Report Share Posted January 24, 2017 Align Segment-ID Name Score E-Value Identity EPI887471 A/chicken/Czech Republic/206-17_2/2017(H5N8) (A/H5N8) segment 7 (MP) 1794.2 0.000000e+00 971/971 (100%) EPI869812 A/duck/France/161108h/2016 (A/H5N8) segment 7 (MP) 1777.6 0.000000e+00 968/971 (99%) EPI861570 A/mute swan/Croatia/70/2016 (A/H5N8) segment 7 (MP) 1777.6 0.000000e+00 968/971 (99%) EPI881282 A/chicken/Germany-MV/R8790/2016 (A/H5N8) segment 7 (MP) 1766.5 0.000000e+00 966/971 (99%) EPI881277 A/chicken/Germany-SH/R8758/2016 (A/H5N8) segment 7 (MP) 1766.5 0.000000e+00 966/971 (99%) EPI868851 A/turkey/England/052131/2016 (A/H5N8) segment 7 (MP) 1766.5 0.000000e+00 966/971 (99%) EPI860404 A/tufted_duck/Germany/AR8459-L01988/2016 (A/H5N8) segment 7 (MP) 1766.5 0.000000e+00 966/971 (99%) EPI860237 A/wild duck/Poland/82A/2016 (A/H5N8) segment 7 (MP) 1766.5 0.000000e+00 966/971 (99%) EPI859654 A/tufted_duck/Germany/AR8444-L01986/2016 (A/H5N8) segment 7 (MP) 1766.5 0.000000e+00 966/971 (99%) EPI773760 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 7 (MP) 1766.5 0.000000e+00 966/971 (99%) EPI869946 A/herring gull/Poland/84/2016 (A/H5N8) segment 7 (MP) 1761.0 0.000000e+00 965/971 (99%) EPI869690 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 7 (MP) 1761.0 0.000000e+00 965/971 (99%) EPI863860 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 7 (MP) 1761.0 0.000000e+00 965/971 (99%) EPI860498 A/tufted duck/Germany-SH/R8444/2016 (A/H5N8) segment 7 (MP) 1761.0 0.000000e+00 965/971 (99%) EPI860396 A/tufted_duck/Germany/AR8444-L01987/2016 (A/H5N8) segment 7 (MP) 1761.0 0.000000e+00 965/971 (99%) EPI863852 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 7 (MP) 1757.3 0.000000e+00 964/971 (99%) EPI863837 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 7 (MP) 1757.3 0.000000e+00 964/971 (99%) EPI863829 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 7 (MP) 1757.3 0.000000e+00 964/971 (99%) EPI863868 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 7 (MP) 1755.4 0.000000e+00 964/971 (99%) EPI826909 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 7 (MP) 1749.9 0.000000e+00 963/971 (99%) EPI823751 A/wild duck/Tyva/35/2016 (A/H5N8) segment 7 (MP) 1749.9 0.000000e+00 963/971 (99%) EPI823463 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 7 (MP) 1749.9 0.000000e+00 963/971 (99%) EPI774437 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 7 (MP) 1749.9 0.000000e+00 963/971 (99%) EPI774364 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 7 (MP) 1749.9 0.000000e+00 963/971 (99%) EPI774297 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 7 (MP) 1749.9 0.000000e+00 963/971 (99%) EPI774221 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 7 (MP) 1749.9 0.000000e+00 963/971 (99%) EPI836617 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 7 (MP) 1744.4 0.000000e+00 962/971 (99%) EPI823759 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 7 (MP) 1744.4 0.000000e+00 962/971 (99%) EPI774501 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 7 (MP) 1744.4 0.000000e+00 962/971 (99%) EPI774485 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 7 (MP) 1744.4 0.000000e+00 962/971 (99%) EPI774453 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 7 (MP) 1744.4 0.000000e+00 962/971 (99%) EPI774413 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 7 (MP) 1744.4 0.000000e+00 962/971 (99%) EPI774397 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 7 (MP) 1744.4 0.000000e+00 962/971 (99%) EPI774347 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 7 (MP) 1744.4 0.000000e+00 962/971 (99%) EPI774338 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 7 (MP) 1744.4 0.000000e+00 962/971 (99%) EPI774330 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 7 (MP) 1744.4 0.000000e+00 962/971 (99%) EPI774321 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 7 (MP) 1744.4 0.000000e+00 962/971 (99%) EPI774271 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 7 (MP) 1744.4 0.000000e+00 962/971 (99%) EPI774245 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 7 (MP) 1744.4 0.000000e+00 962/971 (99%) EPI774229 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 7 (MP) 1744.4 0.000000e+00 962/971 (99%) EPI774213 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 7 (MP) 1744.4 0.000000e+00 962/971 (99%) EPI836609 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 7 (MP) 1738.8 0.000000e+00 961/971 (98%) EPI774493 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 7 (MP) 1738.8 0.000000e+00 961/971 (98%) EPI774478 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 7 (MP) 1738.8 0.000000e+00 961/971 (98%) EPI774405 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 7 (MP) 1738.8 0.000000e+00 961/971 (98%) EPI774381 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 7 (MP) 1738.8 0.000000e+00 961/971 (98%) EPI774355 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 7 (MP) 1738.8 0.000000e+00 961/971 (98%) EPI774289 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 7 (MP) 1738.8 0.000000e+00 961/971 (98%) EPI774145 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 7 (MP) 1738.8 0.000000e+00 961/971 (98%) EPI774509 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 960/971 (98%) EPI774421 A/Bar-headed Goose/Qinghai/BTY18-MU/2016 (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 960/971 (98%) EPI774389 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 960/971 (98%) EPI774313 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 960/971 (98%) EPI774280 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 960/971 (98%) EPI774237 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 960/971 (98%) EPI774204 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 960/971 (98%) EPI774179 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 960/971 (98%) EPI774162 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 960/971 (98%) EPI774153 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 960/971 (98%) EPI774137 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 961/972 (98%) EPI858847 A/painted stork/India/10CA03/2016 (A/H5N8) segment 7 (MP) 1727.7 0.000000e+00 959/971 (98%) EPI774305 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 7 (MP) 1727.7 0.000000e+00 959/971 (98%) EPI774262 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 7 (MP) 1727.7 0.000000e+00 960/972 (98%) EPI774254 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 7 (MP) 1727.7 0.000000e+00 960/972 (98%) EPI774196 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 7 (MP) 1727.7 0.000000e+00 959/971 (98%) EPI774123 A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 7 (MP) 1727.7 0.000000e+00 959/971 (98%) EPI774116 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 7 (MP) 1727.7 0.000000e+00 959/971 (98%) EPI774429 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 7 (MP) 1725.9 0.000000e+00 958/970 (98%) EPI858840 A/duck/India/10CA01/2016 (A/H5N8) segment 7 (MP) 1722.2 0.000000e+00 958/971 (98%) EPI774470 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 7 (MP) 1722.2 0.000000e+00 959/972 (98%) EPI774372 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 7 (MP) 1722.2 0.000000e+00 959/972 (98%) EPI774188 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 7 (MP) 1722.2 0.000000e+00 958/971 (98%) EPI774171 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 7 (MP) 1722.2 0.000000e+00 958/971 (98%) EPI774461 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 7 (MP) 1716.7 0.000000e+00 958/972 (98%) EPI704539 A/duck/Mongolia/709/2015 (A/H10N7) segment 7 (MP) 1700.0 0.000000e+00 954/971 (98%) EPI704531 A/duck/Mongolia/626/2015 (A/H10N7) segment 7 (MP) 1700.0 0.000000e+00 954/971 (98%) EPI704515 A/duck/Mongolia/499/2015 (A/H10N7) segment 7 (MP) 1700.0 0.000000e+00 954/971 (98%) EPI704343 A/duck/Mongolia/179/2015 (A/H3N8) segment 7 (MP) 1700.0 0.000000e+00 954/971 (98%) EPI704335 A/duck/Mongolia/173/2015 (A/H3N8) segment 7 (MP) 1700.0 0.000000e+00 954/971 (98%) EPI692379 A/duck/Chongqing/S2086/2012 (A/H4N8) segment 7 (MP) 1694.5 0.000000e+00 953/971 (98%) EPI682954 A/wild bird/Wuhan/CDHN15/2015 (A/H6N2) segment 7 (MP) 1689.0 0.000000e+00 952/971 (98%) EPI682953 A/wild bird/Wuhan/CDHN09/2015 (A/H6N2) segment 7 (MP) 1689.0 0.000000e+00 952/971 (98%) EPI590050 A/duck/Vietnam/LBM798/2014 (A/H3N6) segment 7 (MP) 1689.0 0.000000e+00 952/971 (98%) EPI467812 A/European teal/Chany/63/2011 (A/H3N8) segment 7 (MP) 1689.0 0.000000e+00 952/971 (98%) EPI461550 A/duck/Hunan/S11090/2012 (A/H4N6) segment 7 (MP) 1683.4 0.000000e+00 951/971 (97%) EPI704449 A/duck/Mongolia/996/2015 (A/H3N8) segment 7 (MP) 1672.3 0.000000e+00 949/971 (97%) EPI704417 A/duck/Mongolia/543/2015 (A/H4N6) segment 7 (MP) 1672.3 0.000000e+00 949/971 (97%) EPI601676 A/duck/Jiangxi/34864/2013 (A/H0) segment 7 (MP) 1672.3 0.000000e+00 949/971 (97%) EPI599826 A/duck/Jiangxi/32213/2013 (A/H7N6) segment 7 (MP) 1672.3 0.000000e+00 949/971 (97%) EPI548388 A/chicken/Jilin/SD001/2014 (A/H9N2) segment 7 (MP) 1668.6 0.000000e+00 948/971 (97%) EPI749996 A/environment/sichuan/322074/2015 (A/H4N6) segment 7 (MP) 1666.8 0.000000e+00 948/971 (97%) EPI682981 A/duck/Wuhan/WHYF05/2014 (A/H9N2) segment 7 (MP) 1666.8 0.000000e+00 949/972 (97%) EPI682951 A/wild bird/Wuhan/CDHN173/2015 (A/H11N9) segment 7 (MP) 1666.8 0.000000e+00 948/971 (97%) EPI682950 A/wild bird/Wuhan/CDHN22/2015 (A/H11N9) segment 7 (MP) 1666.8 0.000000e+00 948/971 (97%) EPI682949 A/wild bird/Wuhan/CDHN01/2015 (A/H11N9) segment 7 (MP) 1666.8 0.000000e+00 948/971 (97%) EPI590087 A/duck/Quang Ninh/90c112/2013 (A/H3N2) segment 7 (MP) 1666.8 0.000000e+00 948/971 (97%) EPI773768 A/chicken/Netherlands/16007311-037041/2016 (A/H7N9) segment 7 (MP) 1661.3 0.000000e+00 947/971 (97%) EPI753587 A/duck/Hokkaido/W9/2015 (A/H1N1) segment 7 (MP) 1661.3 0.000000e+00 947/971 (97%) EPI704294 A/duck/Mongolia/127/2015 (A/H4N6) segment 7 (MP) 1661.3 0.000000e+00 947/971 (97%) EPI704270 A/duck/Mongolia/101/2015 (A/H4N6) segment 7 (MP) 1661.3 0.000000e+00 947/971 (97%) Link to comment Share on other sites More sharing options...
niman Posted January 24, 2017 Author Report Share Posted January 24, 2017 Align Segment-ID Name Score E-Value Identity EPI887465 A/chicken/Czech Republic/206-17_2/2017(H5N8) (A/H5N8) segment 1 (PB2) 4211.5 0.000000e+00 2280/2280 (100%) EPI867457 A/mute swan/Croatia/70/2016 (A/H5N8) segment 1 (PB2) 4150.5 0.000000e+00 2269/2280 (99%) EPI869806 A/duck/France/161108h/2016 (A/H5N8) segment 1 (PB2) 4139.5 0.000000e+00 2267/2280 (99%) EPI618102 A/common coot/Republic of Georgia/1/2010 (A/H6N2) segment 1 (PB2) 3912.3 0.000000e+00 2226/2280 (97%) EPI749574 A/Environment/Chongqing/45208/2015 (A/H5N6) segment 1 (PB2) 3906.8 0.000000e+00 2225/2280 (97%) EPI527564 A/common goldeneye/Mongolia/1216/2010 (A/H1N1) segment 1 (PB2) 3890.2 0.000000e+00 2222/2280 (97%) EPI527545 A/tufted duck/Mongolia/1409/2010 (A/H1N1) segment 1 (PB2) 3890.2 0.000000e+00 2222/2280 (97%) EPI527563 A/common goldeneye/Mongolia/1238/2010 (A/H1N1) segment 1 (PB2) 3879.1 0.000000e+00 2220/2280 (97%) EPI618117 A/black-headed gull/Republic of Georgia/1/2010 (A/H11N1) segment 1 (PB2) 3868.0 0.000000e+00 2218/2280 (97%) EPI324555 A/quail/Lebanon/273/2010 (A/H9N2) segment 1 (PB2) 3856.9 0.000000e+00 2216/2280 (97%) EPI617950 A/black-headed gull/Republic of Georgia/2/2011 (A/H9N1) segment 1 (PB2) 3840.3 0.000000e+00 2213/2280 (97%) EPI692509 A/duck/Hunan/S1166/2010 (A/H4N6) segment 1 (PB2) 3807.1 0.000000e+00 2208/2281 (96%) EPI750103 A/chicken/Taiwan/01174/2015 (A/H5N3) segment 1 (PB2) 3801.5 0.000000e+00 2208/2282 (96%) EPI588965 A/chicken/Taiwan/a174/2015 (A/H5N3) segment 1 (PB2) 3801.5 0.000000e+00 2208/2282 (96%) EPI617839 A/black-headed gull/Republic of Georgia/9/2012 (A/H2N5) segment 1 (PB2) 3796.0 0.000000e+00 2205/2280 (96%) EPI463584 A/tundra swan/Shimane/3211A001/2011 (A/H5N2) segment 1 (PB2) 3796.0 0.000000e+00 2205/2280 (96%) EPI750183 A/goose/Taiwan/01038/2015 (A/H5N3) segment 1 (PB2) 3790.4 0.000000e+00 2206/2282 (96%) EPI588973 A/duck/Taiwan/a068/2015 (A/H5N8) segment 1 (PB2) 3790.4 0.000000e+00 2205/2281 (96%) EPI574291 A/duck/Vietnam/LBM48/2011 (A/H3N2) segment 1 (PB2) 3784.9 0.000000e+00 2203/2280 (96%) EPI401796 A/canvasback/Xianghai/428/2011 (A/H5N2) segment 1 (PB2) 3784.9 0.000000e+00 2203/2280 (96%) EPI617989 A/mallard/Republic of Georgia/3/2011 (A/H3N8) segment 1 (PB2) 3779.4 0.000000e+00 2202/2280 (96%) EPI560058 A/mallard/Novomychalivka/2-23-12/2010 (A/H15N7) segment 1 (PB2) 3779.4 0.000000e+00 2202/2280 (96%) EPI750185 A/goose/Taiwan/01042/2015 (A/H5N3) segment 1 (PB2) 3773.8 0.000000e+00 2203/2282 (96%) EPI750111 A/duck/Taiwan/A3400/2015 (A/H5N8) segment 1 (PB2) 3773.8 0.000000e+00 2202/2281 (96%) EPI527553 A/ruddy shelduck/Mongolia/921C2/2009 (A/H7N1) segment 1 (PB2) 3773.8 0.000000e+00 2201/2280 (96%) EPI372391 A/Egyptian goose/Egypt/05588-NAMRU3/2006 (A/H7N7) segment 1 (PB2) 3773.8 0.000000e+00 2202/2281 (96%) EPI469129 A/wild waterfowl/Hong Kong/MPM3375/2011 (A/H7N6) segment 1 (PB2) 3768.3 0.000000e+00 2200/2280 (96%) EPI617797 A/black-headed gull/Republic of Georgia/7/2012 (A/H2N7) segment 1 (PB2) 3762.7 0.000000e+00 2200/2281 (96%) EPI692469 A/duck/Henan/S4179/2009 (A/H4N6) segment 1 (PB2) 3757.2 0.000000e+00 2199/2281 (96%) EPI596394 A/muscovy duck/Vietnam/LBM115/2012 (A/H3N2) segment 1 (PB2) 3757.2 0.000000e+00 2198/2280 (96%) EPI775005 A/duck/Hebei/B1647-1/2011 (A/H3N2) segment 1 (PB2) 3751.7 0.000000e+00 2199/2282 (96%) EPI775000 A/duck/Shanghai/120-1/2009 (A/H3N8) segment 1 (PB2) 3751.7 0.000000e+00 2199/2282 (96%) EPI395159 A/duck/Vietnam/LBM1/2011 (A/H4N6) segment 1 (PB2) 3751.7 0.000000e+00 2198/2281 (96%) EPI619253 A/mallard/Sweden/5994/2005 (A/H7N7) segment 1 (PB2) 3746.1 0.000000e+00 2197/2281 (96%) EPI387906 A/mallard/Korea/1041/2010 (A/H10N8) segment 1 (PB2) 3746.1 0.000000e+00 2196/2280 (96%) EPI361736 A/lesser whistling-duck/Thailand/CU-W3946/2010 (A/H12N1) segment 1 (PB2) 3746.1 0.000000e+00 2178/2253 (96%) EPI618220 A/mallard/Sweden/5944/2005 (A/H7N7) segment 1 (PB2) 3740.6 0.000000e+00 2196/2281 (96%) EPI619239 A/mallard/Sweden/5927/2005 (A/H0) segment 1 (PB2) 3735.0 0.000000e+00 2195/2281 (96%) EPI262712 A/aquatic bird/Korea/w347/2008 (A/H5N2) segment 1 (PB2) 3735.0 0.000000e+00 2196/2282 (96%) EPI602452 A/duck/Jiangxi/33695/2013 (A/H10N3) segment 1 (PB2) 3724.0 0.000000e+00 2192/2280 (96%) EPI599870 A/duck/Jiangxi/33778/2013 (A/H10N3) segment 1 (PB2) 3724.0 0.000000e+00 2192/2280 (96%) EPI508037 A/wild duck/Korea/CSM42-34/2011 (A/H7N9) segment 1 (PB2) 3724.0 0.000000e+00 2192/2280 (96%) EPI508036 A/wild duck/Korea/CSM42-1/2011 (A/H7N9) segment 1 (PB2) 3724.0 0.000000e+00 2192/2280 (96%) EPI461612 A/duck/Hunan/S11893/2012 (A/H4N6) segment 1 (PB2) 3724.0 0.000000e+00 2192/2280 (96%) EPI703416 A/duck/Yunan/V286/2012 (A/H1N2) segment 1 (PB2) 3722.1 0.000000e+00 2179/2261 (96%) EPI602445 A/duck/Jiangxi/33665/2013 (A/H10N3) segment 1 (PB2) 3718.4 0.000000e+00 2191/2280 (96%) EPI602438 A/duck/Jiangxi/33663/2013 (A/H10N3) segment 1 (PB2) 3718.4 0.000000e+00 2191/2280 (96%) EPI602400 A/duck/Jiangxi/33759/2013 (A/H10N3) segment 1 (PB2) 3718.4 0.000000e+00 2191/2280 (96%) EPI602379 A/duck/Jiangxi/33713/2013 (A/H10N3) segment 1 (PB2) 3718.4 0.000000e+00 2191/2280 (96%) EPI602372 A/duck/Jiangxi/33699/2013 (A/H10N3) segment 1 (PB2) 3718.4 0.000000e+00 2191/2280 (96%) EPI599877 A/duck/Jiangxi/33779/2013 (A/H10N3) segment 1 (PB2) 3718.4 0.000000e+00 2191/2280 (96%) EPI599856 A/duck/Jiangxi/33744/2013 (A/H10N3) segment 1 (PB2) 3718.4 0.000000e+00 2191/2280 (96%) EPI599835 A/duck/Jiangxi/33641/2013 (A/H10N3) segment 1 (PB2) 3718.4 0.000000e+00 2191/2280 (96%) EPI602386 A/duck/Jiangxi/33753/2013 (A/H10N3) segment 1 (PB2) 3714.7 0.000000e+00 2190/2280 (96%) EPI602326 A/duck/Jiangxi/33765/2013 (A/H10N3) segment 1 (PB2) 3714.7 0.000000e+00 2190/2280 (96%) EPI361726 A/lesser whistling-duck/Thailand/CU-W3941/2010 (A/H12N1) segment 1 (PB2) 3714.7 0.000000e+00 2170/2249 (96%) EPI602424 A/duck/Jiangxi/33637/2013 (A/H10N3) segment 1 (PB2) 3712.9 0.000000e+00 2190/2280 (96%) EPI602393 A/duck/Jiangxi/33757/2013 (A/H10N3) segment 1 (PB2) 3712.9 0.000000e+00 2190/2280 (96%) EPI602347 A/duck/Jiangxi/33777/2013 (A/H10N3) segment 1 (PB2) 3712.9 0.000000e+00 2190/2280 (96%) EPI602340 A/duck/Jiangxi/33775/2013 (A/H10N3) segment 1 (PB2) 3712.9 0.000000e+00 2190/2280 (96%) EPI602333 A/duck/Jiangxi/33769/2013 (A/H10N3) segment 1 (PB2) 3712.9 0.000000e+00 2190/2280 (96%) EPI599863 A/duck/Jiangxi/33747/2013 (A/H10N3) segment 1 (PB2) 3712.9 0.000000e+00 2190/2280 (96%) EPI599842 A/duck/Jiangxi/33653/2013 (A/H10N3) segment 1 (PB2) 3712.9 0.000000e+00 2190/2280 (96%) EPI599828 A/duck/Jiangxi/33629/2013 (A/H10N3) segment 1 (PB2) 3712.9 0.000000e+00 2190/2280 (96%) EPI372493 A/pied avocet/Ukraine/05848-NAMRU3/2006 (A/H10N4) segment 1 (PB2) 3712.9 0.000000e+00 2192/2282 (96%) EPI602431 A/duck/Jiangxi/33651/2013 (A/H10N3) segment 1 (PB2) 3707.3 0.000000e+00 2188/2280 (95%) EPI602407 A/duck/Jiangxi/33763/2013 (A/H10N3) segment 1 (PB2) 3707.3 0.000000e+00 2189/2280 (96%) EPI703415 A/duck/Fujian/JF47/2014 (A/H1N1) segment 1 (PB2) 3705.5 0.000000e+00 2176/2261 (96%) EPI599849 A/duck/Jiangxi/33701/2013 (A/H10N3) segment 1 (PB2) 3701.8 0.000000e+00 2189/2281 (95%) EPI600182 A/migratory duck/Jiangxi/33520/2013 (A/H10N7) segment 1 (PB2) 3696.3 0.000000e+00 2187/2280 (95%) EPI600176 A/migratory duck/Jiangxi/33238/2013 (A/H10N7) segment 1 (PB2) 3696.3 0.000000e+00 2187/2280 (95%) EPI600170 A/migratory duck/Jiangxi/33195/2013 (A/H10N7) segment 1 (PB2) 3696.3 0.000000e+00 2187/2280 (95%) EPI600162 A/migratory duck/Jiangxi/33158/2013 (A/H10N7) segment 1 (PB2) 3696.3 0.000000e+00 2187/2280 (95%) EPI600156 A/migratory duck/Jiangxi/33038/2013 (A/H10N7) segment 1 (PB2) 3696.3 0.000000e+00 2187/2280 (95%) EPI591921 A/wild bird/Jiangxi/35982/2013 (A/H7N7) segment 1 (PB2) 3696.3 0.000000e+00 2187/2280 (95%) EPI361746 A/lesser whistling-duck/Thailand/CU-W3947/2010 (A/H12N1) segment 1 (PB2) 3692.6 0.000000e+00 2159/2239 (96%) EPI372280 A/shoveler/Egypt/00597-NAMRU3/2004 (A/H7N1) segment 1 (PB2) 3690.7 0.000000e+00 2187/2281 (95%) EPI395168 A/muscovy duck/Vietnam/LBM14/2011 (H3N2) (A/H3N2) segment 1 (PB2) 3685.2 0.000000e+00 2186/2281 (95%) EPI372509 A/garganey/Ukraine/05835-NAMRU3/2006 (A/H8N4) segment 1 (PB2) 3679.6 0.000000e+00 2186/2282 (95%) EPI361718 A/watercock/Thailand/CU-W3699/2009 (A/H12N1) segment 1 (PB2) 3676.0 0.000000e+00 2170/2259 (96%) EPI372383 A/teal/Egypt/13203-NAMRU3/2006 (A/H6N2) segment 1 (PB2) 3674.1 0.000000e+00 2185/2282 (95%) EPI363564 A/wild duck/Jiangxi/8462/2006 (A/H6N1) segment 1 (PB2) 3674.1 0.000000e+00 2184/2281 (95%) EPI296631 A/mallard/Sweden/95/2005 (A/H7N7) segment 1 (PB2) 3674.1 0.000000e+00 2184/2281 (95%) EPI270059 A/aquatic bird/India/NIV-17095/2007 (A/H11N1) segment 1 (PB2) 3674.1 0.000000e+00 2184/2281 (95%) EPI591915 A/wild bird/Jiangxi/34503/2013 (A/H7N7) segment 1 (PB2) 3668.6 0.000000e+00 2182/2280 (95%) EPI372368 A/shoveler/Egypt/13251-NAMRU3/2006 (A/H6N2) segment 1 (PB2) 3668.6 0.000000e+00 2184/2282 (95%) EPI372288 A/shoveler/Egypt/00600-NAMRU3/2004 (A/H10N7) segment 1 (PB2) 3668.6 0.000000e+00 2183/2281 (95%) EPI591909 A/wild bird/Jiangxi/34458/2013 (A/H7N7) segment 1 (PB2) 3663.0 0.000000e+00 2181/2280 (95%) EPI372304 A/teal/Egypt/00835-NAMRU3/2004 (A/H7N7) segment 1 (PB2) 3663.0 0.000000e+00 2182/2281 (95%) EPI372296 A/teal/Egypt/00688-NAMRU3/2004 (A/H11N9) segment 1 (PB2) 3663.0 0.000000e+00 2183/2282 (95%) EPI618307 A/mallard/Sweden/68621/2007 (A/H11N9) segment 1 (PB2) 3657.5 0.000000e+00 2182/2282 (95%) EPI513753 A/mallard/Sweden/79978/2008 (A/H4N6) segment 1 (PB2) 3651.9 0.000000e+00 2181/2282 (95%) EPI618293 A/mallard/Sweden/69639/2007 (A/H11N9) segment 1 (PB2) 3646.4 0.000000e+00 2180/2282 (95%) EPI618544 A/mallard/Sweden/101754/2009 (A/H0) segment 1 (PB2) 3640.9 0.000000e+00 2179/2282 (95%) EPI514604 A/mallard/Sweden/50108/2006 (A/H4N6) segment 1 (PB2) 3640.9 0.000000e+00 2178/2281 (95%) EPI178535 A/Duck/Italy/62330/2006 (A/H10N7) segment 1 (PB2) 3640.9 0.000000e+00 2179/2282 (95%) EPI618253 A/mallard/Sweden/79390/2008 (A/H11N9) segment 1 (PB2) 3635.3 0.000000e+00 2178/2282 (95%) EPI704296 A/duck/Mongolia/141/2015 (A/H0N2) segment 1 (PB2) 3629.8 0.000000e+00 2175/2280 (95%) EPI372320 A/shoveler/Egypt/09864-NAMRU3/2004 (A/H7N7) segment 1 (PB2) 3629.8 0.000000e+00 2177/2282 (95%) EPI704500 A/duck/Mongolia/326/2015 (A/H10N3) segment 1 (PB2) 3624.2 0.000000e+00 2174/2280 (95%) Link to comment Share on other sites More sharing options...
niman Posted January 24, 2017 Author Report Share Posted January 24, 2017 Align Segment-ID Name Score E-Value Identity EPI887466 A/chicken/Czech Republic/206-17_2/2017(H5N8) (A/H5N8) segment 2 (PB1) 4200.4 0.000000e+00 2274/2274 (100%) EPI704370 A/duck/Mongolia/211/2015 (A/H3N8) segment 2 (PB1) 4056.4 0.000000e+00 2249/2275 (98%) EPI704362 A/duck/Mongolia/208/2015 (A/H3N8) segment 2 (PB1) 4056.4 0.000000e+00 2249/2275 (98%) EPI704313 A/duck/Mongolia/167/2015 (A/H3N8) segment 2 (PB1) 4056.4 0.000000e+00 2249/2275 (98%) EPI693704 A/duck/Mongolia/83/2015 (A/H3N8) segment 2 (PB1) 4056.4 0.000000e+00 2249/2275 (98%) EPI693696 A/duck/Mongolia/20/2015 (A/H3N8) segment 2 (PB1) 4056.4 0.000000e+00 2249/2275 (98%) EPI540405 A/waterfowl/Bangladesh/12301/2013 (A/H6N7) segment 2 (PB1) 3991.7 0.000000e+00 2239/2277 (98%) EPI464920 A/guinea fowl/Italy/10VIR-218-134/2010 (A/H5N2) segment 2 (PB1) 3984.3 0.000000e+00 2233/2270 (98%) EPI514974 A/mallard/Sweden/80261/2008 (A/H4N9) segment 2 (PB1) 3973.3 0.000000e+00 2234/2275 (98%) EPI560057 A/mallard/Novomychalivka/2-23-12/2010 (A/H15N7) segment 2 (PB1) 3958.5 0.000000e+00 2231/2274 (98%) EPI617820 A/tufted duck/Republic of Georgia/1/2012 (A/H2N3) segment 2 (PB1) 3945.6 0.000000e+00 2229/2275 (97%) EPI618043 A/mallard/Republic of Georgia/12/2011 (A/H10N4) segment 2 (PB1) 3934.5 0.000000e+00 2227/2275 (97%) EPI617954 A/Mediterranean gull/Republic of Georgia/1/2011 (A/H9N3) segment 2 (PB1) 3934.5 0.000000e+00 2227/2275 (97%) EPI618617 A/mallard/Sweden/133546/2011 (A/H10N4) segment 2 (PB1) 3923.4 0.000000e+00 2225/2275 (97%) EPI617793 A/yellow-legged gull/Republic of Georgia/1/2012 (A/H0) segment 2 (PB1) 3923.4 0.000000e+00 2225/2275 (97%) EPI372361 A/shoveler/Egypt/14879-NAMRU3/2006 (A/H7N1) segment 2 (PB1) 3923.4 0.000000e+00 2225/2275 (97%) EPI617988 A/mallard/Republic of Georgia/3/2011 (A/H3N8) segment 2 (PB1) 3904.9 0.000000e+00 2221/2274 (97%) EPI617899 A/mallard/Republic of Georgia/1/2012 (A/H1N1) segment 2 (PB1) 3901.2 0.000000e+00 2221/2275 (97%) EPI464928 A/chicken/Italy/11VIR-7548/2011 (A/H5N2) segment 2 (PB1) 3895.7 0.000000e+00 2221/2276 (97%) EPI617760 A/mallard/Republic of Georgia/14/2011 (A/H10N7) segment 2 (PB1) 3890.2 0.000000e+00 2219/2275 (97%) EPI182047 A/common eider/Netherlands/1/2006 (A/H3N8) segment 2 (PB1) 3890.2 0.000000e+00 2219/2275 (97%) EPI623944 A/chicken/England/26352/2015 (A/H7N7) segment 2 (PB1) 3879.1 0.000000e+00 2217/2275 (97%) EPI629347 A/chicken/NL-Barneveld/15004745-006-010/2015 (A/H7N7) segment 2 (PB1) 3868.0 0.000000e+00 2216/2276 (97%) EPI629339 A/Chicken/NL-Barneveld/15004745-001-005/2015 (A/H7N7) segment 2 (PB1) 3868.0 0.000000e+00 2216/2276 (97%) EPI839726 A/chicken/France/150169a/2015 (A/H5N1) segment 2 (PB1) 3862.5 0.000000e+00 2215/2276 (97%) EPI464944 A/chicken/Italy/12VIR-7785-67/2012 (A/H5N2) segment 2 (PB1) 3845.8 0.000000e+00 2212/2276 (97%) EPI464936 A/turkey/Italy/12VIR-6607-5/2012 (A/H5N2) segment 2 (PB1) 3845.8 0.000000e+00 2212/2276 (97%) EPI464952 A/turkey/Italy/12VIR-8036-2/2012 (A/H5N2) segment 2 (PB1) 3840.3 0.000000e+00 2211/2276 (97%) EPI345434 A/Larus argentatus/Belgium/02936cls9/2010 (A/H5N2) segment 2 (PB1) 3825.5 0.000000e+00 2202/2267 (97%) EPI704534 A/duck/Mongolia/709/2015 (A/H10N7) segment 2 (PB1) 3823.7 0.000000e+00 2207/2275 (97%) EPI704526 A/duck/Mongolia/626/2015 (A/H10N7) segment 2 (PB1) 3823.7 0.000000e+00 2207/2275 (97%) EPI704509 A/duck/Mongolia/499/2015 (A/H10N7) segment 2 (PB1) 3823.7 0.000000e+00 2207/2275 (97%) EPI618407 A/mallard/Sweden/101589/2009 (A/H11N9) segment 2 (PB1) 3818.1 0.000000e+00 2207/2276 (96%) EPI704396 A/duck/Mongolia/520/2015 (A/H1N1) segment 2 (PB1) 3812.6 0.000000e+00 2205/2275 (96%) EPI618636 A/mallard/Sweden/68529/2007 (A/H12N5) segment 2 (PB1) 3812.6 0.000000e+00 2206/2276 (96%) EPI618622 A/mallard/Sweden/60069/2007 (A/H12N5) segment 2 (PB1) 3812.6 0.000000e+00 2206/2276 (96%) EPI618937 A/mallard/Sweden/101165/2009 (A/H8N4) segment 2 (PB1) 3807.1 0.000000e+00 2204/2275 (96%) EPI618651 A/mallard/Sweden/69794/2007 (A/H12N5) segment 2 (PB1) 3801.5 0.000000e+00 2204/2276 (96%) EPI618605 A/mallard/Sweden/107688/2009 (A/H10N1) segment 2 (PB1) 3801.5 0.000000e+00 2203/2275 (96%) EPI475930 A/mallard/Iceland/1007/2011 (A/H3N6) segment 2 (PB1) 3801.5 0.000000e+00 2204/2276 (96%) EPI211183 A/mallard/Poland/16/09 (A/H7N7) segment 2 (PB1) 3801.5 0.000000e+00 2204/2276 (96%) EPI704501 A/duck/Mongolia/326/2015 (A/H10N3) segment 2 (PB1) 3796.0 0.000000e+00 2203/2276 (96%) EPI704479 A/duck/Mongolia/245/2015 (A/H10N3) segment 2 (PB1) 3790.4 0.000000e+00 2202/2276 (96%) EPI704297 A/duck/Mongolia/141/2015 (A/H0N2) segment 2 (PB1) 3790.4 0.000000e+00 2201/2275 (96%) EPI387542 A/white-fronted goose/Mongolia/1-125/2008 (A/H3N8) segment 2 (PB1) 3790.4 0.000000e+00 2204/2278 (96%) EPI378008 A/mallard/Netherlands/29/2010 (A/H2N3) segment 2 (PB1) 3784.9 0.000000e+00 2202/2277 (96%) EPI618014 A/mallard/Republic of Georgia/4/2010 (A/H1N1) segment 2 (PB1) 3779.4 0.000000e+00 2201/2277 (96%) EPI618448 A/mallard/Sweden/101993/2009 (A/H2N9) segment 2 (PB1) 3762.7 0.000000e+00 2197/2276 (96%) EPI475944 A/great black-backed gull/Iceland/1110/2011 (A/H5N2) segment 2 (PB1) 3762.7 0.000000e+00 2197/2276 (96%) EPI457917 A/duck/Guangxi/GXd-4/2011 (A/H1N2) segment 2 (PB1) 3762.7 0.000000e+00 2197/2276 (96%) EPI367587 A/mallard/Czech Republic/15008-11K/2009 (A/H5N3) segment 2 (PB1) 3757.2 0.000000e+00 2196/2276 (96%) EPI687185 A/chicken/Scotland/532/2016 (A/H5N1) segment 2 (PB1) 3748.0 0.000000e+00 2149/2208 (97%) EPI457909 A/duck/Guangxi/GXd-1/2011 (A/H1N2) segment 2 (PB1) 3740.6 0.000000e+00 2193/2276 (96%) EPI439584 A/avian/Israel/289/2001 (A/H6N2) segment 2 (PB1) 3735.0 0.000000e+00 2192/2276 (96%) EPI433380 A/mallard/Czech Republic/15902-18K/2009 (A/H6N9) segment 2 (PB1) 3735.0 0.000000e+00 2193/2277 (96%) EPI367595 A/mallard/Czech Republic/15962-1T/2010 (A/H6N9) segment 2 (PB1) 3735.0 0.000000e+00 2193/2277 (96%) EPI284355 A/mallard/Czech Republic/15902-17K/2009 (A/H6N2) segment 2 (PB1) 3735.0 0.000000e+00 2193/2277 (96%) EPI336987 A/duck/Zhejiang/2245/2011 (A/H5N1) segment 2 (PB1) 3729.5 0.000000e+00 2192/2277 (96%) EPI527622 A/mallard/Mongolia/1581/2010 (A/H3N8) segment 2 (PB1) 3724.0 0.000000e+00 2191/2277 (96%) EPI439586 A/avian/Israel/320/2001 (A/H6N2) segment 2 (PB1) 3720.3 0.000000e+00 2189/2276 (96%) EPI692454 A/duck/Guizhou/S1167/2010 (A/H4N6) segment 2 (PB1) 3718.4 0.000000e+00 2189/2276 (96%) EPI618214 A/mallard/Sweden/1689/2002 (A/H7N7) segment 2 (PB1) 3718.4 0.000000e+00 2190/2277 (96%) EPI618201 A/mallard/Sweden/1645/2002 (A/H7N7) segment 2 (PB1) 3718.4 0.000000e+00 2190/2277 (96%) EPI617059 A/mallard/Sweden/1671/2002 (A/H7N7) segment 2 (PB1) 3718.4 0.000000e+00 2190/2277 (96%) EPI527631 A/mallard /Mongolia/1551/2010 (A/H3N1) segment 2 (PB1) 3718.4 0.000000e+00 2191/2278 (96%) EPI335410 A/aquatic bird/Korea/CN17/2009 (A/H6N2) segment 2 (PB1) 3718.4 0.000000e+00 2190/2277 (96%) EPI692423 A/duck/Guangxi/S1107/2010 (A/H4N6) segment 2 (PB1) 3712.9 0.000000e+00 2189/2277 (96%) EPI618139 A/mallard/Sweden/1690/2002 (A/H7N7) segment 2 (PB1) 3712.9 0.000000e+00 2190/2278 (96%) EPI485721 A/mallard/Sweden/49/2002 (A/H5N9) segment 2 (PB1) 3712.9 0.000000e+00 2188/2276 (96%) EPI236192 A/mallard/Sweden/49/2002 (A/H5N9) segment 2 (PB1) 3712.9 0.000000e+00 2188/2276 (96%) EPI173879 A/goose/Italy/296426/2003 (A/H1N1) segment 2 (PB1) 3712.9 0.000000e+00 2190/2278 (96%) EPI167837 A/goose/Italy/296426/2003 (A/H1N1) segment 2 (PB1) 3712.9 0.000000e+00 2190/2278 (96%) EPI692430 A/duck/Guangxi/S1211/2010 (A/H4N6) segment 2 (PB1) 3707.3 0.000000e+00 2187/2276 (96%) EPI377795 A/mallard/Sweden/57/2002 (A/H2N3) segment 2 (PB1) 3707.3 0.000000e+00 2187/2276 (96%) EPI336010 A/teal/Chany/444/2009 (A/H8N8) segment 2 (PB1) 3707.3 0.000000e+00 2189/2278 (96%) EPI285821 A/avian/Egypt/920431/2006 (A/H9N2) segment 2 (PB1) 3707.3 0.000000e+00 2188/2277 (96%) EPI540261 A/duck/Bangladesh/1584/2010 (A/H1N3) segment 2 (PB1) 3701.8 0.000000e+00 2188/2278 (96%) EPI540165 A/duck/Bangladesh/1578/2009 (A/H11N3) segment 2 (PB1) 3701.8 0.000000e+00 2186/2276 (96%) EPI540157 A/duck/Bangladesh/1595/2010 (A/H11N3) segment 2 (PB1) 3701.8 0.000000e+00 2186/2276 (96%) EPI372273 A/teal/Egypt/20431-NAMRU3/2003 (A/H1N2) segment 2 (PB1) 3701.8 0.000000e+00 2187/2277 (96%) EPI618644 A/mallard/Sweden/366/2002 (A/H11N9) segment 2 (PB1) 3696.3 0.000000e+00 2186/2277 (96%) EPI485608 A/mallard/Sweden/16/2002 (A/H12N9) segment 2 (PB1) 3696.3 0.000000e+00 2186/2277 (96%) EPI229961 A/duck/France/05057b/2005 (A/H5N2) segment 2 (PB1) 3696.3 0.000000e+00 2187/2278 (96%) EPI169291 A/duck/France/05057b/2005 (A/H5N2) segment 2 (PB1) 3696.3 0.000000e+00 2187/2278 (96%) EPI618913 A/mallard/Sweden/51726/2006 (A/H10N4) segment 2 (PB1) 3690.7 0.000000e+00 2186/2278 (95%) EPI618885 A/mallard/Sweden/51619/2006 (A/H10N4) segment 2 (PB1) 3690.7 0.000000e+00 2186/2278 (95%) EPI514743 A/mallard/Sweden/4508/2004 (A/H4N6) segment 2 (PB1) 3690.7 0.000000e+00 2184/2276 (95%) EPI439580 A/avian/Israel/824/2005 (A/H10N2) segment 2 (PB1) 3690.7 0.000000e+00 2184/2276 (95%) EPI618135 A/mallard/Sweden/6039/2005 (A/H10N4) segment 2 (PB1) 3685.2 0.000000e+00 2183/2276 (95%) EPI533778 A/Caspian seal/Russia/T1/2012 (A/H4N6) segment 2 (PB1) 3685.2 0.000000e+00 2184/2277 (95%) EPI533772 A/Caspian seal/Russia/1884/2002 (A/H4N6) segment 2 (PB1) 3685.2 0.000000e+00 2184/2277 (95%) EPI514671 A/mallard/Sweden/7582/2003 (A/H4N6) segment 2 (PB1) 3685.2 0.000000e+00 2186/2279 (95%) EPI451157 A/mallard/Netherlands/10-Cam/1999 (A/H1N1) segment 2 (PB1) 3685.2 0.000000e+00 2183/2276 (95%) EPI377678 A/mallard/Sweden/99/2002 (A/H2N3) segment 2 (PB1) 3685.2 0.000000e+00 2184/2277 (95%) EPI372265 A/shoveler/Egypt/20313-NAMRU3/2003 (A/H5N2) segment 2 (PB1) 3685.2 0.000000e+00 2186/2279 (95%) EPI251841 A/northern shoveler/Netherlands/18/1999 (A/H11N9) segment 2 (PB1) 3685.2 0.000000e+00 2183/2276 (95%) EPI251652 A/mallard/Netherlands/15/1999 (A/H11N9) segment 2 (PB1) 3685.2 0.000000e+00 2183/2276 (95%) EPI89999 A/shoveler/Netherlands/19/1999 (A/H11N9) segment 2 (PB1) 3685.2 0.000000e+00 2183/2276 (95%) EPI618966 A/mallard/Sweden/1417/2002 (A/H10N7) segment 2 (PB1) 3679.6 0.000000e+00 2183/2277 (95%) EPI618848 A/mallard/Sweden/8023/2005 (A/H10N4) segment 2 (PB1) 3679.6 0.000000e+00 2183/2277 (95%) Link to comment Share on other sites More sharing options...
niman Posted January 24, 2017 Author Report Share Posted January 24, 2017 Align Segment-ID Name Score E-Value Identity EPI887467 A/chicken/Czech Republic/206-17_2/2017(H5N8) (A/H5N8) segment 3 (PA) 3973.3 0.000000e+00 2151/2151 (100%) EPI867456 A/mute swan/Croatia/70/2016 (A/H5N8) segment 3 (PA) 3895.7 0.000000e+00 2135/2148 (99%) EPI869808 A/duck/France/161108h/2016 (A/H5N8) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI774258 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%) EPI774250 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%) EPI774393 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 3 (PA) 3873.5 0.000000e+00 2133/2151 (99%) EPI774184 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 3 (PA) 3873.5 0.000000e+00 2133/2151 (99%) EPI774120 A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 3 (PA) 3873.5 0.000000e+00 2133/2151 (99%) EPI774112 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 3 (PA) 3873.5 0.000000e+00 2133/2151 (99%) EPI774385 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 3 (PA) 3868.0 0.000000e+00 2132/2151 (99%) EPI774309 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 3 (PA) 3868.0 0.000000e+00 2132/2151 (99%) EPI774301 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 3 (PA) 3868.0 0.000000e+00 2132/2151 (99%) EPI774241 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 3 (PA) 3868.0 0.000000e+00 2132/2151 (99%) EPI774233 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 3 (PA) 3868.0 0.000000e+00 2132/2151 (99%) EPI774167 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 3 (PA) 3868.0 0.000000e+00 2132/2151 (99%) EPI774158 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 3 (PA) 3868.0 0.000000e+00 2132/2151 (99%) EPI774149 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 3 (PA) 3868.0 0.000000e+00 2132/2151 (99%) EPI773756 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 3 (PA) 3868.0 0.000000e+00 2132/2151 (99%) EPI774505 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 3 (PA) 3862.5 0.000000e+00 2131/2151 (99%) EPI774489 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 3 (PA) 3862.5 0.000000e+00 2131/2151 (99%) EPI774482 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 3 (PA) 3862.5 0.000000e+00 2131/2151 (99%) EPI774474 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 3 (PA) 3862.5 0.000000e+00 2131/2151 (99%) EPI774465 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 3 (PA) 3862.5 0.000000e+00 2131/2151 (99%) EPI774433 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 3 (PA) 3862.5 0.000000e+00 2131/2151 (99%) EPI774425 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 3 (PA) 3862.5 0.000000e+00 2131/2151 (99%) EPI774377 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 3 (PA) 3862.5 0.000000e+00 2131/2151 (99%) EPI774334 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 3 (PA) 3862.5 0.000000e+00 2131/2151 (99%) EPI774293 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 3 (PA) 3862.5 0.000000e+00 2131/2151 (99%) EPI774285 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 3 (PA) 3862.5 0.000000e+00 2131/2151 (99%) EPI774225 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 3 (PA) 3862.5 0.000000e+00 2131/2151 (99%) EPI774217 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 3 (PA) 3862.5 0.000000e+00 2131/2151 (99%) EPI774209 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 3 (PA) 3862.5 0.000000e+00 2131/2151 (99%) EPI774497 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 3 (PA) 3856.9 0.000000e+00 2130/2151 (99%) EPI774457 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 3 (PA) 3856.9 0.000000e+00 2130/2151 (99%) EPI774449 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 3 (PA) 3856.9 0.000000e+00 2130/2151 (99%) EPI774441 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 3 (PA) 3856.9 0.000000e+00 2130/2151 (99%) EPI774343 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 3 (PA) 3856.9 0.000000e+00 2130/2151 (99%) EPI774276 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 3 (PA) 3856.9 0.000000e+00 2130/2151 (99%) EPI774266 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 3 (PA) 3856.9 0.000000e+00 2130/2151 (99%) EPI774200 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 3 (PA) 3856.9 0.000000e+00 2130/2151 (99%) EPI774192 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 3 (PA) 3856.9 0.000000e+00 2130/2151 (99%) EPI774175 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 3 (PA) 3856.9 0.000000e+00 2130/2151 (99%) EPI774141 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 3 (PA) 3856.9 0.000000e+00 2130/2151 (99%) EPI774131 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 3 (PA) 3856.9 0.000000e+00 2130/2151 (99%) EPI774368 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI774351 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI774325 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI774317 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI836613 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 3 (PA) 3845.8 0.000000e+00 2128/2151 (98%) EPI836605 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 3 (PA) 3845.8 0.000000e+00 2128/2151 (98%) EPI823755 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 3 (PA) 3845.8 0.000000e+00 2128/2151 (98%) EPI823747 A/wild duck/Tyva/35/2016 (A/H5N8) segment 3 (PA) 3845.8 0.000000e+00 2128/2151 (98%) EPI823459 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 3 (PA) 3845.8 0.000000e+00 2128/2151 (98%) EPI774418 A/Bar-headed Goose/Qinghai/BTY18-MU/2016 (A/H5N8) segment 3 (PA) 3845.8 0.000000e+00 2128/2151 (98%) EPI774409 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 3 (PA) 3845.8 0.000000e+00 2128/2151 (98%) EPI774401 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 3 (PA) 3845.8 0.000000e+00 2128/2151 (98%) EPI774360 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 3 (PA) 3845.8 0.000000e+00 2128/2151 (98%) EPI858835 A/duck/India/10CA01/2016 (A/H5N8) segment 3 (PA) 3818.1 0.000000e+00 2123/2151 (98%) EPI515113 A/muscovy duck/Vietnam/LBM529/2013 (A/H3N8) segment 3 (PA) 3762.7 0.000000e+00 2114/2152 (98%) EPI704445 A/duck/Mongolia/996/2015 (A/H3N8) segment 3 (PA) 3746.1 0.000000e+00 2111/2152 (98%) EPI704282 A/duck/Mongolia/118/2015 (A/H4N6) segment 3 (PA) 3740.6 0.000000e+00 2110/2152 (98%) EPI704306 A/duck/Mongolia/154/2015 (A/H0N2) segment 3 (PA) 3724.0 0.000000e+00 2107/2152 (97%) EPI693713 A/duck/Mongolia/66/2015 (A/H10N2) segment 3 (PA) 3724.0 0.000000e+00 2107/2152 (97%) EPI704502 A/duck/Mongolia/326/2015 (A/H10N3) segment 3 (PA) 3718.4 0.000000e+00 2106/2152 (97%) EPI704480 A/duck/Mongolia/245/2015 (A/H10N3) segment 3 (PA) 3718.4 0.000000e+00 2106/2152 (97%) EPI704397 A/duck/Mongolia/520/2015 (A/H1N1) segment 3 (PA) 3718.4 0.000000e+00 2106/2152 (97%) EPI704298 A/duck/Mongolia/141/2015 (A/H0N2) segment 3 (PA) 3712.9 0.000000e+00 2105/2152 (97%) EPI704429 A/duck/Mongolia/769/2015 (A/H4N6) segment 3 (PA) 3707.3 0.000000e+00 2105/2153 (97%) EPI693697 A/duck/Mongolia/20/2015 (A/H3N8) segment 3 (PA) 3707.3 0.000000e+00 2104/2152 (97%) EPI704266 A/duck/Mongolia/101/2015 (A/H4N6) segment 3 (PA) 3696.3 0.000000e+00 2102/2152 (97%) EPI704290 A/duck/Mongolia/127/2015 (A/H4N6) segment 3 (PA) 3690.7 0.000000e+00 2101/2152 (97%) EPI866092 A/duck/Korea/ES2/2016(H5N6) (A/H5N6) segment 3 (PA) 3668.6 0.000000e+00 2097/2152 (97%) EPI866131 A/mandarin duck/Korea/WB246/2016(H5N6) (A/H5N6) segment 3 (PA) 3657.5 0.000000e+00 2095/2152 (97%) EPI866084 A/chicken/Korea/HN1/2016(H5N6) (A/H5N6) segment 3 (PA) 3657.5 0.000000e+00 2095/2152 (97%) EPI614278 A/mallard/Republic of Georgia/2/2012 (A/H2N3) segment 3 (PA) 3624.2 0.000000e+00 2089/2152 (97%) EPI614284 A/mallard/Republic of Georgia/1/2010 (A/H10N7) segment 3 (PA) 3602.1 0.000000e+00 2084/2151 (96%) EPI377637 A/northern shoveler/Georgia/1/2010 (A/H2N3) segment 3 (PA) 3602.1 0.000000e+00 2084/2151 (96%) EPI614253 A/garganey/Republic of Georgia/1/2011 (A/H4N2) segment 3 (PA) 3596.5 0.000000e+00 2084/2152 (96%) EPI614286 A/mallard/Republic of Georgia/3/2010 (A/H7N3) segment 3 (PA) 3591.0 0.000000e+00 2082/2151 (96%) EPI614298 A/common coot/Republic of Georgia/1/2010 (A/H6N2) segment 3 (PA) 3585.5 0.000000e+00 2082/2152 (96%) EPI493025 A/wild waterfowl/Dongting/C2383/2012 (A/H1N2) segment 3 (PA) 3541.1 0.000000e+00 2073/2151 (96%) EPI692567 A/duck/Sichuan/S4202/2011 (A/H4N2) segment 3 (PA) 3535.6 0.000000e+00 2072/2151 (96%) EPI363462 A/duck/Guangxi/1157/2006 (A/H6N2) segment 3 (PA) 3535.6 0.000000e+00 2073/2152 (96%) EPI614294 A/tufted duck/Republic of Georgia/1/2012 (A/H2N3) segment 3 (PA) 3530.1 0.000000e+00 2072/2152 (96%) EPI363470 A/duck/Guangxi/1248/2006 (A/H6N2) segment 3 (PA) 3524.5 0.000000e+00 2071/2152 (96%) EPI316751 A/mallard/Czech Republic/13438-29K/2010 (A/H11N9) segment 3 (PA) 3524.5 0.000000e+00 2070/2151 (96%) EPI749127 A/environment/Chongqing/02412/2012 (A/H5N1) segment 3 (PA) 3519.0 0.000000e+00 2069/2151 (96%) EPI296255 A/wild duck/Korea/SH60/2004 (A/H1N1) segment 3 (PA) 3513.4 0.000000e+00 2070/2153 (96%) EPI244544 A/mallard/Korea/GH171/2007 (A/H7N7) segment 3 (PA) 3513.4 0.000000e+00 2069/2152 (96%) EPI244507 A/magpie/Korea/YJD174/2007 (A/H7N7) segment 3 (PA) 3513.4 0.000000e+00 2069/2152 (96%) EPI118295 A/duck/Jiang Xi/2374/2005 (A/H3N6) segment 3 (PA) 3513.4 0.000000e+00 2069/2152 (96%) EPI538470 A/common shelduck/Mongolia/2187/2011 (A/H5N3) segment 3 (PA) 3507.9 0.000000e+00 2069/2153 (96%) EPI538433 A/wild bird/Mongolia/2066/2011 (A/H5N3) segment 3 (PA) 3507.9 0.000000e+00 2069/2153 (96%) EPI363454 A/duck/Guangxi/1074/2006 (A/H6N2) segment 3 (PA) 3507.9 0.000000e+00 2068/2152 (96%) EPI296257 A/wild duck/Korea/CSM38/2004 (A/H1N1) segment 3 (PA) 3507.9 0.000000e+00 2068/2152 (96%) EPI268817 A/duck/Hunan/177/2005 (A/H6N1) segment 3 (PA) 3507.9 0.000000e+00 2068/2152 (96%) EPI262642 A/aquatic bird/Korea/w74/2005 (A/H5N2) segment 3 (PA) 3507.9 0.000000e+00 2068/2152 (96%) EPI262641 A/aquatic bird/Korea/w54/2005 (A/H5N2) segment 3 (PA) 3507.9 0.000000e+00 2068/2152 (96%) EPI118289 A/duck/Jiang Xi/1286/2005 (A/H5N2) segment 3 (PA) 3507.9 0.000000e+00 2068/2152 (96%) EPI773764 A/chicken/Netherlands/16007311-037041/2016 (A/H7N9) segment 3 (PA) 3502.4 0.000000e+00 2066/2151 (96%) Link to comment Share on other sites More sharing options...
niman Posted January 24, 2017 Author Report Share Posted January 24, 2017 Align Segment-ID Name Score E-Value Identity EPI887469 A/chicken/Czech Republic/206-17_2/2017(H5N8) (A/H5N8) segment 5 (NP) 2765.6 0.000000e+00 1497/1497 (100%) EPI865159 A/mute swan/Croatia/70/2016 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI869810 A/duck/France/161108h/2016 (A/H5N8) segment 5 (NP) 2699.1 0.000000e+00 1485/1497 (99%) EPI617879 A/mallard/Republic of Georgia/13/2011 (A/H6N2) segment 5 (NP) 2621.5 0.000000e+00 1471/1497 (98%) EPI618049 A/common Teal/Republic of Georgia/1/2011 (A/H3N8) segment 5 (NP) 2582.7 0.000000e+00 1464/1497 (97%) EPI367573 A/mallard/Czech Republic/14333-1K/2011 (A/H3N8) segment 5 (NP) 2582.7 0.000000e+00 1464/1497 (97%) EPI858837 A/duck/India/10CA01/2016 (A/H5N8) segment 5 (NP) 2560.6 0.000000e+00 1460/1497 (97%) EPI678072 A/chicken/Italy/13VIR5051-3/2013 (A/H7N7) segment 5 (NP) 2560.6 0.000000e+00 1460/1497 (97%) EPI678056 A/chicken/Italy/13VIR4774/2013 (A/H7N7) segment 5 (NP) 2560.6 0.000000e+00 1460/1497 (97%) EPI678048 A/chicken/Italy/13VIR4603-1/2013 (A/H7N7) segment 5 (NP) 2560.6 0.000000e+00 1460/1497 (97%) EPI678032 A/chicken/Italy/13VIR4541-8/2013 (A/H7N7) segment 5 (NP) 2560.6 0.000000e+00 1460/1497 (97%) EPI678024 A/chicken/Italy/13VIR4541-7/2013 (A/H7N7) segment 5 (NP) 2560.6 0.000000e+00 1460/1497 (97%) EPI678008 A/chicken/Italy/13VIR4541-33/2013 (A/H7N7) segment 5 (NP) 2560.6 0.000000e+00 1460/1497 (97%) EPI678000 A/chicken/Italy/13VIR4541-32/2013 (A/H7N7) segment 5 (NP) 2560.6 0.000000e+00 1460/1497 (97%) EPI677992 A/chicken/Italy/13VIR4527-11/2013 (A/H7N7) segment 5 (NP) 2560.6 0.000000e+00 1460/1497 (97%) EPI677984 A/chicken/Italy/13VIR4527-12/2013 (A/H7N7) segment 5 (NP) 2560.6 0.000000e+00 1460/1497 (97%) EPI560341 A/Italy/3/2013 (A/H7N7) segment 5 (NP) 2560.6 0.000000e+00 1460/1497 (97%) EPI841780 A/chicken/Wales/600-020823/2014 (A/H4N6) segment 5 (NP) 2555.0 0.000000e+00 1460/1498 (97%) EPI841772 A/chicken/England/474-016250/2014 (A/H4N6) segment 5 (NP) 2555.0 0.000000e+00 1460/1498 (97%) EPI678088 A/turkey/Italy/13VIR4678-1/2013 (A/H7N7) segment 5 (NP) 2555.0 0.000000e+00 1459/1497 (97%) EPI678080 A/chicken/Italy/13VIR5091/2013 (A/H7N7) segment 5 (NP) 2555.0 0.000000e+00 1459/1497 (97%) EPI678064 A/chicken/Italy/13VIR5051-1/2013 (A/H7N7) segment 5 (NP) 2555.0 0.000000e+00 1459/1497 (97%) EPI182084 A/black-headed gull/Netherlands/1/2005 (A/H6N8) segment 5 (NP) 2555.0 0.000000e+00 1459/1497 (97%) EPI678040 A/chicken/Italy/13VIR4541-9/2013 (A/H7N7) segment 5 (NP) 2549.5 0.000000e+00 1458/1497 (97%) EPI678016 A/chicken/Italy/13VIR4541-34/2013 (A/H7N7) segment 5 (NP) 2549.5 0.000000e+00 1458/1497 (97%) EPI533780 A/Caspian seal/Russia/T1/2012 (A/H4N6) segment 5 (NP) 2549.5 0.000000e+00 1458/1497 (97%) EPI533774 A/Caspian seal/Russia/1884/2002 (A/H4N6) segment 5 (NP) 2549.5 0.000000e+00 1458/1497 (97%) EPI476119 A/pink-footed goose/Iceland/0987/2011 (A/H6N8) segment 5 (NP) 2549.5 0.000000e+00 1459/1498 (97%) EPI476106 A/greylag goose/Iceland/0976/2011 (A/H6N8) segment 5 (NP) 2549.5 0.000000e+00 1459/1498 (97%) EPI476099 A/greylag goose/Iceland/0961/2011 (A/H6N8) segment 5 (NP) 2549.5 0.000000e+00 1459/1498 (97%) EPI476069 A/greylag goose/Iceland/0926/2011 (A/H6N8) segment 5 (NP) 2549.5 0.000000e+00 1459/1498 (97%) EPI476053 A/greylag goose/Iceland/0921/2011 (A/H6N8) segment 5 (NP) 2549.5 0.000000e+00 1459/1498 (97%) EPI476046 A/greylag goose/Iceland/0911/2011 (A/H6N8) segment 5 (NP) 2549.5 0.000000e+00 1459/1498 (97%) EPI476033 A/greylag goose/Iceland/1474/2011 (A/H6N8) segment 5 (NP) 2549.5 0.000000e+00 1459/1498 (97%) EPI773766 A/chicken/Netherlands/16007311-037041/2016 (A/H7N9) segment 5 (NP) 2544.0 0.000000e+00 1457/1497 (97%) EPI513586 A/mallard/Sweden/80415/2008 (A/H0) segment 5 (NP) 2544.0 0.000000e+00 1457/1497 (97%) EPI476113 A/greylag goose/Iceland/0980/2011 (A/H6N8) segment 5 (NP) 2544.0 0.000000e+00 1458/1498 (97%) EPI476039 A/greylag goose/Iceland/1482/2011 (A/H6N8) segment 5 (NP) 2544.0 0.000000e+00 1458/1498 (97%) EPI476026 A/greylag goose/Iceland/1459/2011 (A/H6N5) segment 5 (NP) 2544.0 0.000000e+00 1458/1498 (97%) EPI63227 A/teal/Italy/3931-38/2005 (A/H5N2) segment 5 (NP) 2544.0 0.000000e+00 1459/1499 (97%) EPI248513 A/wild duck/Germany/WV30/06 (A/H1N1) segment 5 (NP) 2542.1 0.000000e+00 1450/1487 (97%) EPI182076 A/common teal/Netherlands/2/2005 (A/H6N8) segment 5 (NP) 2538.4 0.000000e+00 1456/1497 (97%) EPI182044 A/common eider/Netherlands/1/2006 (A/H3N8) segment 5 (NP) 2538.4 0.000000e+00 1456/1497 (97%) EPI860394 A/tufted_duck/Germany/AR8444-L01987/2016 (A/H5N8) segment 5 (NP) 2532.9 0.000000e+00 1456/1498 (97%) EPI178531 A/Duck/Italy/62330/2006 (A/H10N7) segment 5 (NP) 2532.9 0.000000e+00 1455/1497 (97%) EPI861394 A/turkey/Germany-SH/R8595/2016 (A/H5N8) segment 5 (NP) 2529.2 0.000000e+00 1455/1498 (97%) EPI860402 A/tufted_duck/Germany/AR8459-L01988/2016 (A/H5N8) segment 5 (NP) 2527.3 0.000000e+00 1455/1498 (97%) EPI859656 A/tufted_duck/Germany/AR8444-L01986/2016 (A/H5N8) segment 5 (NP) 2527.3 0.000000e+00 1455/1498 (97%) EPI178556 A/Mallard/Italy/46341-12/2006 (A/H10N7) segment 5 (NP) 2527.3 0.000000e+00 1454/1497 (97%) EPI173732 A/duck/Italy/69238/2007 (A/H1N1) segment 5 (NP) 2527.3 0.000000e+00 1454/1497 (97%) EPI167810 A/duck/Italy/69238/2007 (A/H1N1) segment 5 (NP) 2527.3 0.000000e+00 1454/1497 (97%) EPI868849 A/turkey/England/052131/2016 (A/H5N8) segment 5 (NP) 2521.8 0.000000e+00 1454/1498 (97%) EPI839729 A/chicken/France/150169a/2015 (A/H5N1) segment 5 (NP) 2516.3 0.000000e+00 1452/1497 (96%) EPI439828 A/domestic green-winged teal/Hunan/2036/2007 (A/H3N6) segment 5 (NP) 2516.3 0.000000e+00 1452/1497 (96%) EPI816832 A/turkey/Poland/14/2013 (A/H9N2) segment 5 (NP) 2512.6 0.000000e+00 1432/1468 (97%) EPI561718 A/chicken/England/2830/2015 (A/H7N7) segment 5 (NP) 2510.7 0.000000e+00 1452/1498 (96%) EPI251859 A/whitefronted goose/Netherlands/2/1999 (A/H6N2) segment 5 (NP) 2510.7 0.000000e+00 1451/1497 (96%) EPI251618 A/greylag goose/Netherlands/4/1999 (A/H6N1) segment 5 (NP) 2510.7 0.000000e+00 1451/1497 (96%) EPI229963 A/duck/France/05057b/2005 (A/H5N2) segment 5 (NP) 2510.7 0.000000e+00 1437/1475 (97%) EPI169293 A/duck/France/05057b/2005 (A/H5N2) segment 5 (NP) 2510.7 0.000000e+00 1437/1475 (97%) EPI514048 A/mallard/Sweden/68504/2007 (A/H4N2) segment 5 (NP) 2505.2 0.000000e+00 1450/1497 (96%) EPI118126 A/Chicken/Italy/9097/97 (A/H5N9) segment 5 (NP) 2505.2 0.000000e+00 1450/1497 (96%) EPI63189 A/chicken/Italy/22A/1998 (A/H5N9) segment 5 (NP) 2505.2 0.000000e+00 1450/1497 (96%) EPI618926 A/mallard/Sweden/52057/2006 (A/H0) segment 5 (NP) 2499.6 0.000000e+00 1449/1497 (96%) EPI618536 A/mallard/Sweden/101754/2009 (A/H0) segment 5 (NP) 2499.6 0.000000e+00 1449/1497 (96%) EPI514198 A/mallard/Sweden/52462/2006 (A/H4N6) segment 5 (NP) 2499.6 0.000000e+00 1449/1497 (96%) EPI618873 A/mallard/Sweden/5824/2005 (A/H10N7) segment 5 (NP) 2494.1 0.000000e+00 1448/1497 (96%) EPI332954 A/Anas_platyrhynchos/Camargue/091863/09 (A/H10N7) segment 5 (NP) 2494.1 0.000000e+00 1448/1497 (96%) EPI251648 A/mallard/Netherlands/12/2001 (A/H4N2) segment 5 (NP) 2494.1 0.000000e+00 1449/1498 (96%) EPI464915 A/guinea fowl/Italy/10VIR-218-134/2010 (A/H5N2) segment 5 (NP) 2490.4 0.000000e+00 1414/1447 (97%) EPI618918 A/mallard/Sweden/51933/2006 (A/H10N9) segment 5 (NP) 2488.6 0.000000e+00 1447/1497 (96%) EPI618770 A/mallard/Sweden/52903/2006 (A/H10N9) segment 5 (NP) 2488.6 0.000000e+00 1447/1497 (96%) EPI618520 A/mallard/Sweden/7146/2004 (A/H9N2) segment 5 (NP) 2488.6 0.000000e+00 1447/1497 (96%) EPI514839 A/mallard/Sweden/1869/2003 (A/H4N6) segment 5 (NP) 2488.6 0.000000e+00 1448/1498 (96%) EPI514794 A/mallard/Sweden/3271/2003 (A/H4N6) segment 5 (NP) 2488.6 0.000000e+00 1448/1498 (96%) EPI514787 A/mallard/Sweden/3223/2003 (A/H4N6) segment 5 (NP) 2488.6 0.000000e+00 1448/1498 (96%) EPI485704 A/mallard/Netherlands/8/2001 (A/H4N6) segment 5 (NP) 2488.6 0.000000e+00 1448/1498 (96%) EPI372435 A/shoveler/Egypt/00006-NAMRU3/2007 (A/H10N1) segment 5 (NP) 2488.6 0.000000e+00 1447/1497 (96%) EPI284614 A/swan/Slovenia/53/2009 (A/H7N7) segment 5 (NP) 2488.6 0.000000e+00 1447/1497 (96%) EPI251778 A/mallard/Sweden/62/2003 (A/H4N6) segment 5 (NP) 2488.6 0.000000e+00 1448/1498 (96%) EPI284342 A/Anas crecca/Spain/1460/2008 (A/H7N9) segment 5 (NP) 2484.9 0.000000e+00 1446/1497 (96%) EPI618660 A/mallard/Sweden/101111/2009 (A/H11N9) segment 5 (NP) 2483.0 0.000000e+00 1446/1497 (96%) EPI618535 A/mallard/Sweden/50980/2006 (A/H11N9) segment 5 (NP) 2483.0 0.000000e+00 1446/1497 (96%) EPI618493 A/mallard/Sweden/2321/2004 (A/H0) segment 5 (NP) 2483.0 0.000000e+00 1446/1497 (96%) EPI618484 A/mallard/Sweden/100832/2009 (A/H11N9) segment 5 (NP) 2483.0 0.000000e+00 1446/1497 (96%) EPI618470 A/mallard/Sweden/101120/2009 (A/H2N9) segment 5 (NP) 2483.0 0.000000e+00 1446/1497 (96%) EPI618460 A/mallard/Sweden/101082/2009 (A/H11N9) segment 5 (NP) 2483.0 0.000000e+00 1446/1497 (96%) EPI618446 A/mallard/Sweden/101163/2009 (A/H11N9) segment 5 (NP) 2483.0 0.000000e+00 1446/1497 (96%) EPI618431 A/mallard/Sweden/102103/2009 (A/H11N9) segment 5 (NP) 2483.0 0.000000e+00 1446/1497 (96%) EPI618355 A/mallard/Sweden/100760/2009 (A/H11N9) segment 5 (NP) 2483.0 0.000000e+00 1446/1497 (96%) EPI618348 A/mallard/Sweden/100687/2009 (A/H11N9) segment 5 (NP) 2483.0 0.000000e+00 1446/1497 (96%) EPI618336 A/mallard/Sweden/100740/2009 (A/H11N9) segment 5 (NP) 2483.0 0.000000e+00 1446/1497 (96%) EPI618322 A/mallard/Sweden/100791/2009 (A/H11N9) segment 5 (NP) 2483.0 0.000000e+00 1446/1497 (96%) EPI617111 A/mallard/Sweden/80329/2008 (A/H11N5) segment 5 (NP) 2483.0 0.000000e+00 1446/1497 (96%) EPI514846 A/mallard/Sweden/1883/2003 (A/H4N3) segment 5 (NP) 2483.0 0.000000e+00 1447/1498 (96%) EPI514780 A/mallard/Sweden/3221/2003 (A/H4N6) segment 5 (NP) 2483.0 0.000000e+00 1447/1498 (96%) EPI514115 A/mallard/Sweden/60043/2007 (A/H4N6) segment 5 (NP) 2483.0 0.000000e+00 1446/1497 (96%) EPI514038 A/mallard/Sweden/68583/2007 (A/H4N6) segment 5 (NP) 2483.0 0.000000e+00 1446/1497 (96%) EPI513942 A/mallard/Sweden/69698/2007 (A/H4N6) segment 5 (NP) 2483.0 0.000000e+00 1446/1497 (96%) EPI513935 A/mallard/Sweden/69673/2007 (A/H4N6) segment 5 (NP) 2483.0 0.000000e+00 1446/1497 (96%) Link to comment Share on other sites More sharing options...
niman Posted January 24, 2017 Author Report Share Posted January 24, 2017 Align Segment-ID Name Score E-Value Identity EPI887472 A/chicken/Czech Republic/206-17_2/2017(H5N8) (A/H5N8) segment 8 (NS) 1532.0 0.000000e+00 829/829 (100%) EPI869813 A/duck/France/161108h/2016 (A/H5N8) segment 8 (NS) 1498.8 0.000000e+00 823/829 (99%) EPI860405 A/tufted_duck/Germany/AR8459-L01988/2016 (A/H5N8) segment 8 (NS) 1498.8 0.000000e+00 823/829 (99%) EPI859657 A/tufted_duck/Germany/AR8444-L01986/2016 (A/H5N8) segment 8 (NS) 1498.8 0.000000e+00 823/829 (99%) EPI881283 A/chicken/Germany-MV/R8790/2016 (A/H5N8) segment 8 (NS) 1493.2 0.000000e+00 822/829 (99%) EPI868852 A/turkey/England/052131/2016 (A/H5N8) segment 8 (NS) 1493.2 0.000000e+00 822/829 (99%) EPI860397 A/tufted_duck/Germany/AR8444-L01987/2016 (A/H5N8) segment 8 (NS) 1493.2 0.000000e+00 822/829 (99%) EPI860499 A/tufted duck/Germany-SH/R8444/2016 (A/H5N8) segment 8 (NS) 1489.5 0.000000e+00 816/821 (99%) EPI869691 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 8 (NS) 1487.7 0.000000e+00 815/820 (99%) EPI863869 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 8 (NS) 1487.7 0.000000e+00 815/820 (99%) EPI858839 A/duck/India/10CA01/2016 (A/H5N8) segment 8 (NS) 1487.7 0.000000e+00 821/829 (99%) EPI823760 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 8 (NS) 1487.7 0.000000e+00 821/829 (99%) EPI823752 A/wild duck/Tyva/35/2016 (A/H5N8) segment 8 (NS) 1487.7 0.000000e+00 821/829 (99%) EPI823464 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 8 (NS) 1487.7 0.000000e+00 821/829 (99%) EPI881278 A/chicken/Germany-SH/R8758/2016 (A/H5N8) segment 8 (NS) 1484.0 0.000000e+00 817/824 (99%) EPI773761 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 8 (NS) 1482.1 0.000000e+00 820/829 (98%) EPI861571 A/mute swan/Croatia/70/2016 (A/H5N8) segment 8 (NS) 1480.3 0.000000e+00 814/823 (98%) EPI863853 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 8 (NS) 1476.6 0.000000e+00 813/820 (99%) EPI863838 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 8 (NS) 1476.6 0.000000e+00 813/820 (99%) EPI863830 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 8 (NS) 1476.6 0.000000e+00 813/820 (99%) EPI860238 A/wild duck/Poland/82A/2016 (A/H5N8) segment 8 (NS) 1476.6 0.000000e+00 813/820 (99%) EPI858848 A/painted stork/India/10CA03/2016 (A/H5N8) segment 8 (NS) 1476.6 0.000000e+00 819/829 (98%) EPI836618 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 8 (NS) 1476.6 0.000000e+00 815/823 (99%) EPI836610 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 8 (NS) 1476.6 0.000000e+00 815/823 (99%) EPI774263 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 8 (NS) 1476.6 0.000000e+00 815/823 (99%) EPI774255 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 8 (NS) 1476.6 0.000000e+00 815/823 (99%) EPI869947 A/herring gull/Poland/84/2016 (A/H5N8) segment 8 (NS) 1472.9 0.000000e+00 807/812 (99%) EPI863861 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 8 (NS) 1472.9 0.000000e+00 812/820 (99%) EPI774510 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 814/823 (98%) EPI774502 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 814/823 (98%) EPI774486 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 814/823 (98%) EPI774471 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 814/823 (98%) EPI774462 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 814/823 (98%) EPI774454 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 814/823 (98%) EPI774446 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 814/823 (98%) EPI774438 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 814/823 (98%) EPI774430 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 814/823 (98%) EPI774422 A/Bar-headed Goose/Qinghai/BTY18-MU/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 814/823 (98%) EPI774415 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 814/823 (98%) EPI774406 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 814/823 (98%) EPI774390 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 814/823 (98%) EPI774382 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 814/823 (98%) EPI774373 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 814/823 (98%) EPI774322 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 814/823 (98%) EPI774314 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 814/823 (98%) EPI774247 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 814/823 (98%) EPI774230 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 814/823 (98%) EPI774222 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 814/823 (98%) EPI774181 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 814/823 (98%) EPI774172 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 814/823 (98%) EPI774146 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 814/823 (98%) EPI774138 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 814/823 (98%) EPI774124 A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 814/823 (98%) EPI774117 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 814/823 (98%) EPI774398 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 8 (NS) 1465.5 0.000000e+00 813/823 (98%) EPI774340 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 8 (NS) 1465.5 0.000000e+00 813/823 (98%) EPI774298 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 8 (NS) 1465.5 0.000000e+00 813/823 (98%) EPI774290 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 8 (NS) 1465.5 0.000000e+00 813/823 (98%) EPI774282 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 8 (NS) 1465.5 0.000000e+00 813/823 (98%) EPI774273 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 8 (NS) 1465.5 0.000000e+00 813/823 (98%) EPI774238 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 8 (NS) 1465.5 0.000000e+00 813/823 (98%) EPI774214 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 8 (NS) 1465.5 0.000000e+00 813/823 (98%) EPI774206 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 8 (NS) 1465.5 0.000000e+00 813/823 (98%) EPI774197 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 8 (NS) 1465.5 0.000000e+00 813/823 (98%) EPI774189 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 8 (NS) 1465.5 0.000000e+00 813/823 (98%) EPI774164 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 8 (NS) 1465.5 0.000000e+00 813/823 (98%) EPI774155 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 8 (NS) 1465.5 0.000000e+00 813/823 (98%) EPI774494 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 8 (NS) 1460.0 0.000000e+00 812/823 (98%) EPI774479 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 8 (NS) 1460.0 0.000000e+00 812/823 (98%) EPI774365 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 8 (NS) 1460.0 0.000000e+00 812/823 (98%) EPI774331 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 8 (NS) 1460.0 0.000000e+00 812/823 (98%) EPI774306 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 8 (NS) 1460.0 0.000000e+00 812/823 (98%) EPI703688 A/duck/Eastern China/S1109/2014 (A/H5N8) segment 8 (NS) 1460.0 0.000000e+00 812/823 (98%) EPI774357 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 8 (NS) 1454.4 0.000000e+00 811/823 (98%) EPI774348 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 8 (NS) 1454.4 0.000000e+00 811/823 (98%) EPI690812 A/goose/Yangzhou/0420/2014 (A/H5N8) segment 8 (NS) 1454.4 0.000000e+00 816/830 (98%) EPI749883 A/Environment/Jiangsu/98335/2014 (A/H5N8) segment 8 (NS) 1445.2 0.000000e+00 809/822 (98%) EPI690804 A/goose/Shandong/WFSG1/2014 (A/H5N8) segment 8 (NS) 1443.4 0.000000e+00 814/830 (98%) EPI690796 A/goose/Jiangsu/QD5/2014 (A/H5N8) segment 8 (NS) 1443.4 0.000000e+00 814/830 (98%) EPI530993 A/duck/Zhejiang/W24/2013 (A/H5N8) segment 8 (NS) 1437.8 0.000000e+00 813/830 (97%) EPI764785 A/duck/Shaoxing/5240/2013 (A/H0) segment 8 (NS) 1434.1 0.000000e+00 807/822 (98%) EPI703682 A/duck/Eastern China/S0215/2014 (A/H5N8) segment 8 (NS) 1426.7 0.000000e+00 807/824 (97%) EPI643151 A/Environment/Guangdong/GZ55/2013(H5N8) (A/H5N8) segment 8 (NS) 1421.2 0.000000e+00 811/831 (97%) EPI561505 A/Baikal teal/Korea/H52/2014 (A/H5N8) segment 8 (NS) 1421.2 0.000000e+00 810/830 (97%) EPI530994 A/duck/Zhejiang/6D18/2013 (A/H5N8) segment 8 (NS) 1421.2 0.000000e+00 810/830 (97%) EPI509710 A/breeder duck/Korea/Gochang1/2014 (A/H5N8) segment 8 (NS) 1421.2 0.000000e+00 810/830 (97%) EPI762162 A/goose/Eastern China/CZ/2013 (A/H5N8) segment 8 (NS) 1417.5 0.000000e+00 804/822 (97%) EPI602042 A/duck/Ningbo/3262/2013 (A/H0) segment 8 (NS) 1417.5 0.000000e+00 804/822 (97%) EPI681416 A/goose/Zhejiang/925104/2014 (A/H5N8) segment 8 (NS) 1415.7 0.000000e+00 803/821 (97%) EPI681415 A/goose/Zhejiang/925037/2014 (A/H5N8) segment 8 (NS) 1415.7 0.000000e+00 803/821 (97%) EPI507677 A/mallard duck/Shanghai/SH-9/2013 (A/H5N8) segment 8 (NS) 1412.0 0.000000e+00 804/823 (97%) EPI703687 A/goose/Eastern China/S0408/2014 (A/H5N8) segment 8 (NS) 1410.1 0.000000e+00 804/824 (97%) EPI681406 A/goose/Zhejiang/925106/2014 (A/H5N6) segment 8 (NS) 1410.1 0.000000e+00 802/821 (97%) EPI762154 A/duck/Eastern China/JY/2014 (A/H5N8) segment 8 (NS) 1406.4 0.000000e+00 802/822 (97%) EPI703679 A/duck/Eastern China/S1210/2013 (A/H5N8) segment 8 (NS) 1406.4 0.000000e+00 802/822 (97%) EPI646032 A/goose/Jiangsu/WX202/2014 (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 805/830 (96%) EPI681413 A/duck/Zhejiang/925019/2014 (A/H5N8) segment 8 (NS) 1388.0 0.000000e+00 798/821 (97%) EPI681414 A/duck/Zhejiang/925169/2014 (A/H5N8) segment 8 (NS) 1382.4 0.000000e+00 797/821 (97%) EPI461611 A/duck/Hunan/S11643/2012 (A/H4N9) segment 8 (NS) 1371.3 0.000000e+00 797/824 (96%) EPI461603 A/duck/Hunan/S11547/2012 (A/H4N9) segment 8 (NS) 1371.3 0.000000e+00 797/824 (96%) Link to comment Share on other sites More sharing options...
niman Posted January 24, 2017 Author Report Share Posted January 24, 2017 Map Update https://www.google.com/maps/d/edit?hl=en&hl=en&authuser=0&authuser=0&mid=1aNOepBDPUd0zdRnQE1UbSW8djsk&ll=48.778889376225244%2C16.78143168378915&z=10 Link to comment Share on other sites More sharing options...
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