niman Posted February 5, 2016 Report Share Posted February 5, 2016 University of Wisconsin has released partial Zika sequences from Noverber 2015 transmission in Sincelejo, Colombiahttp://www.ncbi.nlm.nih.gov/nuccore/KU646827.1http://www.ncbi.nlm.nih.gov/nuccore/KU646828.1 Link to comment Share on other sites More sharing options...
niman Posted February 5, 2016 Author Report Share Posted February 5, 2016 LOCUS KU646828 2601 bp RNA linear VRL 02-FEB-2016 DEFINITION Zika virus isolate Si322 polyprotein gene, partial cds. ACCESSION KU646828 VERSION KU646828.1 GI:984923539 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus; Spondweni virus group. REFERENCE 1 (bases 1 to 2601) AUTHORS Camacho,E., Paternina-Gomez,M., Blanco,P.J., Osorio,J.E. and Aliota,M.T. TITLE Detection of Autochthonous Zika Virus Transmission in Sincelejo, Colombia JOURNAL Emerging Infect. Dis. 22 (2016) In press REMARK Publication Status: Available-Online prior to print REFERENCE 2 (bases 1 to 2601) AUTHORS Camacho,E., Paternina-Gomez,M., Blanco,P.J., Osorio,J.E. and Aliota,M.T. TITLE Direct Submission JOURNAL Submitted (29-JAN-2016) Pathobiological Sciences, University of Wisconsin, 1656 Linden Dr, Madison, WI, USA COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..2601 /organism="Zika virus" /mol_type="genomic RNA" /isolate="Si322" /host="Homo sapiens" /db_xref="taxon:64320" /country="Colombia" /collection_date="10-Nov-2015" /note="genotype: Asian" CDS <1..>2601 /codon_start=1 /product="polyprotein" /protein_id="AMC37201.1" /db_xref="GI:984923540" /translation="IRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFWAKDGCWYGMEIRPRKEPESNLVRSMVTA GSTDHMDHFSL" mat_peptide <1..1515 /product="envelope" mat_peptide 1516..>2601 /product="NS1" ORIGIN 1 atcaggtgca taggagtcag caatagggac tttgtggaag gtatgtcagg tgggacttgg 61 gttgatgttg tcttggaaca tggaggttgt gtcaccgtaa tggcacagga caaaccgact 121 gtcgacatag agctggttac aacaacagtc agcaacatgg cggaggtaag atcctactgc 181 tatgaggcat caatatcaga catggcttcg gacagccgct gcccaacaca aggtgaagcc 241 taccttgaca agcaatcaga cactcaatat gtctgcaaaa gaacgttagt ggacagaggc 301 tggggaaatg gatgtggact ttttggcaaa gggagcctgg tgacatgcgc taagtttgca 361 tgctccaaga aaatgaccgg gaagagcatc cagccagaga atctggagta ccggataatg 421 ttgtcagttc atggctccca gcacagtggg atgatcgtta atgacacagg acatgaaact 481 gatgagaata gagcgaaggt tgagataacg cccaattcac caagagccga agccaccctg 541 gggggttttg gaagcctagg acttgattgt gaaccgagga caggccttga cttttcagat 601 ttgtattact tgactatgaa taacaagcac tggttggttc acaaggagtg gttccacgac 661 attccattac cttggcacgc tggggcagac accggaactc cacactggaa caacaaagaa 721 gcactggtag agttcaagga cgcacatgcc aaaaggcaaa ctgtcgtggt tctagggagt 781 caagaaggag cagttcacac ggcccttgct ggagctctgg aggctgagat ggatggtgca 841 aagggaaggc tgtcctctgg ccacttgaaa tgtcgcctga aaatggataa acttagattg 901 aagggcgtgt catactcctt gtgtaccgca gcgttcacat tcaccaagat cccggctgaa 961 acactgcacg ggacagtcac agtggaggta cagtacgcag ggacagatgg accttgcaag 1021 gttccagctc agatggcggt ggacatgcaa actctgaccc cagttgggag gttgataacc 1081 gctaaccccg taatcactga aagcactgag aactctaaga tgatgctgga acttgatcca 1141 ccatttgggg actcttacat tgtcatagga gtcggggaga agaagatcac ccaccactgg 1201 cacaggagtg gcagcaccat tggaaaagca tttgaagcca ctgtgagagg tgccaagaga 1261 atggcagtct tgggagacac agcctgggac tttggatcag ttggaggcgc tctcaactca 1321 ttgggcaagg gcatccatca aatttttgga gcagctttca aatcattgtt tggaggaatg 1381 tcctggttct cacaaattct cattggaacg ttgctgatgt ggttgggtct gaacacaaag 1441 aatggatcta tttcccttat gtgcttggcc ttagggggag tgttgatctt cttatccaca 1501 gccgtctctg ctgatgtggg gtgctcggtg gacttctcaa agaaggagac gagatgtggt 1561 acaggggtgt tcgtctataa cgacgttgaa gcctggaggg acaggtacaa gtaccatcct 1621 gactcccccc gtagattggc agcagcagtc aagcaagcct gggaagatgg tatctgcggg 1681 atctcctctg tttcaagaat ggaaaacatc atgtggagat cagtagaagg ggagctcaac 1741 gcaatcctgg aagagaatgg agttcaactg acggtcgttg tgggatctgt aaaaaacccc 1801 atgtggagag gtccacagag attgcccgtg cctgtgaacg agctgcccca cggctggaag 1861 gcttggggga aatcgtactt cgtcagagca gcaaagacaa ataacagctt tgtcgtggac 1921 ggtgacacac tgaaggaatg cccactcaaa catagagcat ggaacagctt tcttgtggag 1981 gatcatgggt tcggggtatt tcacactagt gtctggctca aggttagaga agattattca 2041 ttagagtgtg atccagccgt tattggaaca gctgttaagg gaaaggaggc tgtacacagt 2101 gatctaggct actggattga gagtgagaag aatgacacat ggaggctgaa gagggcccat 2161 ctgatcgaga tgaaaacatg tgaatggcca aagtcccaca cattgtggac agatggaata 2221 gaagagagtg atctgatcat acccaagtct ttagctgggc cactcagcca tcacaatacc 2281 agagagggct acaggaccca aatgaaaggg ccatggcaca gtgaagagct tgaaattcgg 2341 tttgaggaat gcccaggcac taaggtccac gtggaggaaa catgtggaac aagaggacca 2401 tctctgagat caaccactgc aagcggaagg gtgatcgagg aatggtgctg cagggagtgc 2461 acaatgcccc cactgtcgtt ctgggctaaa gatggctgtt ggtatggaat ggagataagg 2521 cccaggaaag aaccagaaag caacttagta aggtcaatgg tgactgcagg atcaactgat 2581 cacatggatc acttctccct t Link to comment Share on other sites More sharing options...
niman Posted February 5, 2016 Author Report Share Posted February 5, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome46594659100%0.099%KU321639.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds46554655100%0.099%KU365778.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds46554655100%0.099%KJ776791.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds46504650100%0.099%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds46504650100%0.099%KU365779.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds46504650100%0.099%KU365777.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds46324632100%0.099%KU312312.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds45474547100%0.099%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds45164516100%0.099%EU545988.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds45154515100%0.099%JN860885.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds41294129100%0.095%HQ234499.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds3420342073%0.099%KU312315.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds3420342073%0.099%KU312314.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds34113411100%0.089%KF268950.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds34113411100%0.089%KF268948.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds3407340773%0.099%KU312313.1 Link to comment Share on other sites More sharing options...
niman Posted February 5, 2016 Author Report Share Posted February 5, 2016 LOCUS KU646827 2601 bp ss-RNA linear VRL 02-FEB-2016 DEFINITION Zika virus isolate Si323 polyprotein gene, partial cds. ACCESSION KU646827 VERSION KU646827.1 GI:984923537 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus; Spondweni virus group. REFERENCE 1 (bases 1 to 2601) AUTHORS Camacho,E., Paternina-Gomez,M., Blanco,P.J., Osorio,J.E. and Aliota,M.T. TITLE Detection of Autochthonous Zika Virus Transmission in Sincelejo, Colombia JOURNAL Emerging Infect. Dis. 22 (2016) In press REMARK Publication Status: Available-Online prior to print REFERENCE 2 (bases 1 to 2601) AUTHORS Camacho,E., Paternina-Gomez,M., Blanco,P.J., Osorio,J.E. and Aliota,M.T. TITLE Direct Submission JOURNAL Submitted (29-JAN-2016) Pathobiological Sciences, University of Wisconsin, 1656 Linden Dr, Madison, WI, USA COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..2601 /organism="Zika virus" /mol_type="genomic RNA" /isolate="Si323" /host="Homo sapiens" /db_xref="taxon:64320" /country="Colombia" /collection_date="10-Nov-2015" /note="genotype: Asian" CDS <1..>2601 /codon_start=1 /product="polyprotein" /protein_id="AMC37200.1" /db_xref="GI:984923538" /translation="IRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFWAKDGCWYGMEIRPRKEPESNLVRSMVTA GSTDHMDHFSL" mat_peptide <1..1515 /product="envelope" mat_peptide 1516..>2601 /product="NS1" ORIGIN 1 atcaggtgca taggagtcag caatagggac tttgtggaag gtatgtcagg tgggacttgg 61 gttgatgtcg tcttggaaca tggaggttgt gtcaccgtaa tggcacagga caaaccgact 121 gtcgacatag agctggttac aacaacagtc agcaacatgg cggaggtaag atcctactgc 181 tatgaggcat caatatcaga catggcttcg gacagccgct gcccaacaca aggtgaagcc 241 taccttgaca agcaatcaga cactcaatat gtctgcaaaa gaacgttagt ggacagaggc 301 tggggaaatg gatgtggact ttttggcaaa gggagcctgg tgacatgcgc taagtttgca 361 tgctccaaga aaatgaccgg gaagagcatc cagccagaga atctggagta ccggataatg 421 ttgtcagttc atggctccca gcacagtggg atgatcgtta atgacacagg acatgaaact 481 gatgagaata gagcgaaggt tgagataacg cccaattcac caagagccga agccaccctg 541 gggggttttg gaagcctagg acttgattgt gaaccgagga caggccttga cttttcagat 601 ttgtattact tgactatgaa taacaagcac tggttggttc acaaggagtg gttccacgac 661 attccattac cttggcacgc tggggcagac accggaactc cacactggaa caacaaagaa 721 gcactggtag agttcaagga cgcacatgcc aaaaggcaaa ctgtcgtggt tctagggagt 781 caggaaggag cagttcacac ggcccttgct ggagctctgg aggctgagat ggatggtgca 841 aagggaaggc tgtcctctgg ccacttgaaa tgtcgcctga aaatggacaa acttagattg 901 aagggcgtgt catactcctt gtgtaccgca gcgttcacat tcaccaagat cccggctgaa 961 acactgcacg ggacagtcac agtggaggta cagtacgcag ggacagatgg accttgcaag 1021 gttccagctc agatggcggt ggacatgcaa actctgaccc cagttgggag gttgataacc 1081 gctaaccccg taatcactga aagcactgag aactctaaga tgatgctgga acttgatcca 1141 ccatttgggg actcttacat tgtcatagga gtcggggaga agaagatcac ccaccactgg 1201 cacaggagtg gcagcaccat tggaaaagca tttgaagcca ctgtgagagg tgccaagaga 1261 atggcagtct tgggagacac agcctgggac tttggatcag ttggaggcgc tctcaactca 1321 ttgggcaagg gcatccatca aatttttgga gcagctttca aatcattgtt tggaggaatg 1381 tcctggttct cacaaattct cattggaacg ttgctgatgt ggttgggtct gaacacaaag 1441 aatggatcta tttcccttat gtgcttggcc ttagggggag tgttgatctt cttatccaca 1501 gccgtctctg ctgatgtggg gtgctcggtg gacttctcaa agaaggagac gagatgtggt 1561 acaggggtgt tcgtctataa cgacgttgaa gcctggaggg acaggtacaa gtaccatcct 1621 gactcccccc gtagattggc agcagcagtc aagcaagcct gggaagatgg tatctgcggg 1681 atctcctctg tttcaagaat ggaaaacatc atgtggagat cagtagaagg ggagctcaac 1741 gcaatcctgg aagagaatgg agttcaactg acggtcgttg tgggatctgt aaaaaacccc 1801 atgtggagag gtccacagag attgcccgtg cctgtgaacg agctgcccca cggctggaag 1861 gcttggggga aatcgtactt cgtcagagca gcaaagacaa ataacagctt tgtcgtggat 1921 ggtgacacac tgaaggaatg cccactcaaa catagagcat ggaacagctt tcttgtggag 1981 gatcatgggt tcggggtatt tcacactagt gtctggctca aggttagaga agattattca 2041 ttagagtgtg atccagccgt tattggaaca gctgttaagg gaaaggaggc tgtacacagt 2101 gatctaggct actggattga gagtgagaag aatgacacat ggaggctgaa gagggcccat 2161 ctgatcgaga tgaaaacatg tgaatggcca aagtcccaca cattgtggac agatggaata 2221 gaagagagtg atctgatcat acccaagtct ttagctgggc cactcagcca tcacaatacc 2281 agagagggct acaggaccca aatgaaaggg ccatggcaca gtgaagagct tgaaattcgg 2341 tttgaggaat gcccaggcac taaggtccac gtggaggaaa catgtggaac aagaggacca 2401 tctctgagat caaccactgc aagcggaagg gtgatcgagg aatggtgctg cagggagtgc 2461 acaatgcccc cactgtcgtt ctgggctaaa gatggctgtt ggtatggaat ggagataagg 2521 cccaggaaag aaccagaaag caacttagta aggtcaatgg tgactgcagg atcaactgat 2581 cacatggatc acttctccct t Link to comment Share on other sites More sharing options...
niman Posted February 5, 2016 Author Report Share Posted February 5, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome46504650100%0.099%KU321639.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds46464646100%0.099%KU365778.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds46464646100%0.099%KJ776791.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds46414641100%0.099%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds46414641100%0.099%KU365779.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds46414641100%0.099%KU365777.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds46234623100%0.099%KU312312.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds45384538100%0.099%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds45074507100%0.098%EU545988.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds45064506100%0.098%JN860885.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds41294129100%0.095%HQ234499.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds34293429100%0.089%KF268950.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds34293429100%0.089%KF268948.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds3407340773%0.099%KU312315.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds3407340773%0.099%KU312314.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds3393339373%0.099%KU312313.1 Link to comment Share on other sites More sharing options...
niman Posted February 9, 2016 Author Report Share Posted February 9, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU646828.1|Zika virus isolate Si322 polyprotein gene, partial cds46914691100%0.0100%KU646828.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds46774677100%0.099%KU647676.1Select seq gb|KU646827.1|Zika virus isolate Si323 polyprotein gene, partial cds46734673100%0.099%KU646827.1Select seq gb|KU509998.1|Zika virus strain Haiti/1225/2014, complete genome46644664100%0.099%KU509998.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome46594659100%0.099%KU321639.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds46554655100%0.099%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds46554655100%0.099%KU501216.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds46554655100%0.099%KU365778.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds46554655100%0.099%KJ776791.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds46504650100%0.099%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds46504650100%0.099%KU365779.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds46504650100%0.099%KU365777.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome46464646100%0.099%KU501215.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds46324632100%0.099%KU312312.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds45474547100%0.099%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds45164516100%0.099%EU545988.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds45154515100%0.099%JN860885.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds41294129100%0.095%HQ234499.1 Link to comment Share on other sites More sharing options...
niman Posted February 9, 2016 Author Report Share Posted February 9, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU646827.1|Zika virus isolate Si323 polyprotein gene, partial cds46914691100%0.0100%KU646827.1Select seq gb|KU646828.1|Zika virus isolate Si322 polyprotein gene, partial cds46734673100%0.099%KU646828.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds46684668100%0.099%KU647676.1Select seq gb|KU509998.1|Zika virus strain Haiti/1225/2014, complete genome46554655100%0.099%KU509998.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome46504650100%0.099%KU321639.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds46464646100%0.099%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds46464646100%0.099%KU501216.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds46464646100%0.099%KU365778.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds46464646100%0.099%KJ776791.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds46414641100%0.099%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds46414641100%0.099%KU365779.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds46414641100%0.099%KU365777.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome46374637100%0.099%KU501215.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds46234623100%0.099%KU312312.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds45384538100%0.099%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds45074507100%0.098%EU545988.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds45064506100%0.098%JN860885.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds41294129100%0.095%HQ234499.1 Link to comment Share on other sites More sharing options...
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