December 26, 20178 yr comment_12996 H5N6 from December 2017 collections from Great Black-back gulls in the Netherlands match recent H5N6 isolates from Japan and Taiwan. Report
December 26, 20178 yr Author comment_12997 Isolate detail Isolate name: A/Great Black-backed Gull/Netherlands/2/2017 Isolate ID: EPI_ISL_289501 Passage details/history: Original material (OM) Type: A / H5N6 Lineage: Sample information Collection date: 2017-12-18 Host Larus marinus Additional host information: Domestic status: Wild Is vaccinated: Location: Netherlands / Provincie Noord-Holland Additional location information: Health status: Dead Specimen source: Strain or commercial product name used for vaccination: Institute information Originating lab: Erasmus Medical Center Sample ID given by the sample provider: 320-161 Address: Erasmus Medical Center Department of Virology Dr. Molewaterplein 50 3015GE Rotterdam Netherlands Submitting lab: Erasmus Medical Center Sample ID given by the submitting laboratory: 320-161 Authors: Poen,MJ; Van Der Jeugd,HP; Kelder,L; Scheuer,RD; Bestebroer,TM; Koopmans,MPG; Fouchier,RAM Address: Erasmus Medical Center Department of Virology Dr. Molewaterplein 50 3015GE Rotterdam Netherlands Publication Publication In vivo antiviral resistance Phenotype Genotype Unspecified Antiviral resistance tested by experimental procedures Adamantanes: Unknown Oseltamivir: Unknown Zanamivir: Unknown Peramivir: Unknown Other: Unknown Additional information Antigenic characterization: Note: Sequence segment identifier length accession # INSDC Sequence HA A/Great Black-backed Gull/Netherlands/2/2017 1644 EPI1129919 NA A/Great Black-backed Gull/Netherlands/2/2017 1339 EPI1129918 Submitter information Submitter: Poen, Maria Johanna Submission Date: 2017-12-22 Last modifier: Poen, Maria Johanna Last modified: 2017-12-22 Address: Erasmus Medical Center Department of Virology Dr. Molewaterplein 50 3015GE Rotterdam Netherlands Report
December 26, 20178 yr Author comment_12998 Descriptions Align Segment-ID Name Score E-Value Identity EPI1129919 A/Great Black-backed Gull/Netherlands/2/2017 (A/H5N6) segment 4 (HA) 3037.0 0.000000e+00 1644/1644 (100%) EPI1129916 A/Great Black-backed Gull/Netherlands/1/2017 (A/H5N6) segment 4 (HA) 2977.9 0.000000e+00 1628/1636 (99%) EPI1019638 A/Eur_Wig/NL-Zoeterwoude/16015702-010/2016 (A/H5N8) segment 4 (HA) 2970.5 0.000000e+00 1632/1644 (99%) EPI1019590 A/Eur_Wig/NL-Reeuwijk/16015903-003/2016 (A/H5N8) segment 4 (HA) 2970.5 0.000000e+00 1632/1644 (99%) EPI1019582 A/Eur_Wig/NL-Leidschendam/16015697-007/2016 (A/H5N8) segment 4 (HA) 2970.5 0.000000e+00 1632/1644 (99%) EPI1019550 A/Eur_Wig/NL-Gouda/16015824-001/2016 (A/H5N8) segment 4 (HA) 2970.5 0.000000e+00 1632/1644 (99%) EPI1019518 A/Eur_Wig/NL-De Waal (Texel)/16014891-004/2016 (A/H5N8) segment 4 (HA) 2970.5 0.000000e+00 1632/1644 (99%) EPI1019510 A/Eur_Wig/NL-De Waal (Texel)/16014891-003/2016 (A/H5N8) segment 4 (HA) 2970.5 0.000000e+00 1632/1644 (99%) EPI943320 A/pochard_duck/England/SA12_157809/2016 (A/H5N8) segment 4 (HA) 2970.5 0.000000e+00 1632/1644 (99%) EPI1019734 A/Mal/NL-IJsselmuiden/16015448-002/2016 (A/H5N8) segment 4 (HA) 2965.0 0.000000e+00 1631/1644 (99%) EPI1019678 A/Grey_Go/NL-Groot-Ammers/16015901-012/2016 (A/H5N8) segment 4 (HA) 2965.0 0.000000e+00 1631/1644 (99%) EPI1019646 A/Eur_Wig/NL-Zwolle/16015820-002/2016 (A/H5N8) segment 4 (HA) 2965.0 0.000000e+00 1631/1644 (99%) EPI1019622 A/Eur_Wig/NL-West Graftdijk/16015746-003/2016 (A/H5N8) segment 4 (HA) 2965.0 0.000000e+00 1631/1644 (99%) EPI1019606 A/Eur_Wig/NL-Vianen/16015917-006/2016 (A/H5N8) segment 4 (HA) 2965.0 0.000000e+00 1631/1644 (99%) EPI1019430 A/Ch/NL-Rhenen/16016141-006/2016 (A/H5N8) segment 4 (HA) 2965.0 0.000000e+00 1631/1644 (99%) EPI1019406 A/Ch/NL-Boven Leeuwen/16016151-006-010/2016 (A/H5N8) segment 4 (HA) 2965.0 0.000000e+00 1631/1644 (99%) EPI942943 A/chicken/Wales/000023/2016 (A/H5N8) segment 4 (HA) 2965.0 0.000000e+00 1631/1644 (99%) EPI1019478 A/Dk/NL-Kamperveen/16016104-001-005/2016 (A/H5N8) segment 4 (HA) 2959.5 0.000000e+00 1630/1644 (99%) EPI1019438 A/Ch/NL-Zoeterwoude/16016484-021-025/2016 (A/H5N8) segment 4 (HA) 2959.5 0.000000e+00 1630/1644 (99%) EPI954583 A/chicken/Italy/17VIR653-12/2017 (A/H5N8) segment 4 (HA) 2959.5 0.000000e+00 1630/1644 (99%) EPI868848 A/turkey/England/052131/2016 (A/H5N8) segment 4 (HA) 2959.5 0.000000e+00 1630/1644 (99%) EPI1019630 A/Eur_Wig/NL-Wormer/16016143-002/2016 (A/H5N8) segment 4 (HA) 2953.9 0.000000e+00 1629/1644 (99%) EPI1019614 A/Eur_Wig/NL-Walterswald/16015923-003/2016 (A/H5N8) segment 4 (HA) 2953.9 0.000000e+00 1629/1644 (99%) EPI1019534 A/Eur_Wig/NL-Enumatil-Groningen/16015704-001/2016 (A/H5N8) segment 4 (HA) 2953.9 0.000000e+00 1629/1644 (99%) EPI1019398 A/Ch/NL-Abbega/X16015736/2016 (A/H5N8) segment 4 (HA) 2953.9 0.000000e+00 1629/1644 (99%) EPI1007675 A/peacock/Belgium/1017/2017 (A/H5N8) segment 4 (HA) 2953.9 0.000000e+00 1629/1644 (99%) EPI990770 A/eurasian wigeon/Germany-NI/AR249-L02143/2017 (A/H5N8) segment 4 (HA) 2953.9 0.000000e+00 1629/1644 (99%) EPI954877 A/Mallard/Hungary/1574a/2017 (A/H5N8) segment 4 (HA) 2953.9 0.000000e+00 1629/1644 (99%) EPI954861 A/Mallard/Hungary/1574b/2017 (A/H5N8) segment 4 (HA) 2953.9 0.000000e+00 1629/1644 (99%) EPI954607 A/turkey/Italy/17VIR1452-22/2017 (A/H5N8) segment 4 (HA) 2953.9 0.000000e+00 1629/1644 (99%) EPI954575 A/turkey/Italy/17VIR576-11/2017 (A/H5N8) segment 4 (HA) 2953.9 0.000000e+00 1629/1644 (99%) EPI954559 A/swan/Italy/17VIR537-2/2017 (A/H5N8) segment 4 (HA) 2953.9 0.000000e+00 1629/1644 (99%) EPI869687 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 4 (HA) 2950.2 0.000000e+00 1628/1644 (99%) EPI1045611 A/chicken/Rostov/44/2017 (A/H5N8) segment 4 (HA) 2948.4 0.000000e+00 1628/1644 (99%) EPI1019526 A/Eur_Wig/NL-Drieborg (Dollard)/16015513-001/2016 (A/H5N8) segment 4 (HA) 2948.4 0.000000e+00 1628/1644 (99%) EPI990794 A/greylag goose/Germany-NI/AR1395-L02144/2017 (A/H5N8) segment 4 (HA) 2948.4 0.000000e+00 1628/1644 (99%) EPI969347 A/turkey/Germany-BB/R377ff/2017 (A/H5N8) segment 4 (HA) 2948.4 0.000000e+00 1628/1644 (99%) EPI961449 A/gadwall/Kurgan/2442/2016 (A/H5N8) segment 4 (HA) 2948.4 0.000000e+00 1628/1644 (99%) EPI954813 A/Greylag_goose/Hungary/320/2017 (A/H5N8) segment 4 (HA) 2948.4 0.000000e+00 1628/1644 (99%) EPI942935 A/turkey/England/003778/2017 (A/H5N8) segment 4 (HA) 2948.4 0.000000e+00 1628/1644 (99%) EPI909452 A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 4 (HA) 2948.4 0.000000e+00 1628/1644 (99%) EPI909444 A/mute swan/Krasnodar/25/2017 (A/H5N8) segment 4 (HA) 2948.4 0.000000e+00 1628/1644 (99%) EPI869931 A/turkey/Poland/83/2016 (A/H5N8) segment 4 (HA) 2948.4 0.000000e+00 1628/1644 (99%) EPI869930 A/turkey/Poland/78/2016 (A/H5N8) segment 4 (HA) 2948.4 0.000000e+00 1628/1644 (99%) EPI873659 A/Eurasian wigeon/Netherlands/1/2016 (A/H5N8) segment 4 (HA) 2944.7 0.000000e+00 1627/1644 (98%) EPI1019718 A/M_Swan/NL-Roggebotsluis/16014462-019/2016 (A/H5N8) segment 4 (HA) 2942.8 0.000000e+00 1627/1644 (98%) EPI1019558 A/Eur_Wig/NL-Greonterp/16015653-001/2016 (A/H5N8) segment 4 (HA) 2942.8 0.000000e+00 1627/1644 (98%) EPI1019494 A/Dk/NL-Stolwijk/16016291-016-020/2016 (A/H5N8) segment 4 (HA) 2942.8 0.000000e+00 1627/1644 (98%) EPI1007667 A/chicken/Belgium/807/2017 (A/H5N8) segment 4 (HA) 2942.8 0.000000e+00 1627/1644 (98%) EPI990802 A/greylag goose/Germany-NI/AR703-L02138/2017 (A/H5N8) segment 4 (HA) 2942.8 0.000000e+00 1627/1644 (98%) EPI931145 A/duck/Czech Republic/1467-17/2017 (H5N8) (A/H5N8) segment 4 (HA) 2942.8 0.000000e+00 1627/1644 (98%) EPI916604 A/bronze turkey/Czech Republic/1414-17/2017 (H5N8) (A/H5N8) segment 4 (HA) 2942.8 0.000000e+00 1627/1644 (98%) EPI909436 A/goose/Krasnodar/3144/2017 (A/H5N8) segment 4 (HA) 2942.8 0.000000e+00 1627/1644 (98%) EPI907346 A/domestic duck/Germany-BB/R681ff/2017 (A/H5N8) segment 4 (HA) 2942.8 0.000000e+00 1627/1644 (98%) EPI859650 A/wild duck/Germany-BW/R8455/2016 (A/H5N8) segment 4 (HA) 2942.8 0.000000e+00 1627/1644 (98%) EPI1040223 A/chicken/Italy/17VIR3078/2017 (A/H5N8) segment 4 (HA) 2939.1 0.000000e+00 1626/1644 (98%) EPI1061371 A/chicken/Belgium/5990/2017 (A/H5N8) segment 4 (HA) 2937.3 0.000000e+00 1626/1644 (98%) EPI1021106 A/mute swan/Czech Republic/1296-17_1/2017 (H5N8) (A/H5N8) segment 4 (HA) 2937.3 0.000000e+00 1626/1644 (98%) EPI1019766 A/T_Dk/NL-Almeerder Zand/16014341-003/2016 (A/H5N8) segment 4 (HA) 2937.3 0.000000e+00 1626/1644 (98%) EPI969254 A/Tufted Duck/Switzerland/V237/2016 (A/H5N8) segment 4 (HA) 2937.3 0.000000e+00 1626/1644 (98%) EPI931207 A/turkey/Germany-BB/R234ff/2017 (A/H5N8) segment 4 (HA) 2937.3 0.000000e+00 1626/1644 (98%) EPI909428 A/turkey/Rostov/11/2017 (A/H5N8) segment 4 (HA) 2937.3 0.000000e+00 1626/1644 (98%) EPI909404 A/chicken/Voronezh/18/2017 (A/H5N8) segment 4 (HA) 2937.3 0.000000e+00 1626/1644 (98%) EPI909396 A/long-eared owl/Voronezh/16/2017 (A/H5N8) segment 4 (HA) 2937.3 0.000000e+00 1626/1644 (98%) EPI909388 A/Ural owl/Voronezh/14/2017 (A/H5N8) segment 4 (HA) 2937.3 0.000000e+00 1626/1644 (98%) EPI909380 A/long-eared owl/Voronezh/15/2017 (A/H5N8) segment 4 (HA) 2937.3 0.000000e+00 1626/1644 (98%) EPI888088 A/wigeon/Italy/17VIR57-3/2017 (A/H5N8) segment 4 (HA) 2937.3 0.000000e+00 1626/1644 (98%) EPI869940 A/herring gull/Poland/84/2016 (A/H5N8) segment 4 (HA) 2937.3 0.000000e+00 1626/1644 (98%) EPI869936 A/chicken/Kalmykia/2661/2016 (A/H5N8) segment 4 (HA) 2937.3 0.000000e+00 1626/1644 (98%) EPI861011 A/turkey/Germany-SH/R8595/2016 (A/H5N8) segment 4 (HA) 2937.3 0.000000e+00 1626/1644 (98%) EPI860401 A/tufted_duck/Germany/AR8459-L01988/2016 (A/H5N8) segment 4 (HA) 2937.3 0.000000e+00 1626/1644 (98%) EPI859653 A/tufted_duck/Germany/AR8444-L01986/2016 (A/H5N8) segment 4 (HA) 2937.3 0.000000e+00 1626/1644 (98%) EPI859212 A/tufted_duck/Germany-SH/R8446/2016 (A/H5N8) segment 4 (HA) 2937.3 0.000000e+00 1626/1644 (98%) EPI978865 A/mute swan/Germany-TH/R1126/2017 (A/H5N8) segment 4 (HA) 2933.6 0.000000e+00 1625/1644 (98%) EPI909364 A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 4 (HA) 2933.6 0.000000e+00 1625/1644 (98%) EPI869924 A/domestic goose/Poland/33/2016 (A/H5N8) segment 4 (HA) 2933.6 0.000000e+00 1625/1644 (98%) EPI1061370 A/Brahma chicken/Belgium/6153/2017 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1625/1644 (98%) EPI1021132 A/goose/Czech Republic/1954-17/2017 (H5N8) (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1625/1644 (98%) EPI1019878 A/Teal/NL-Ferwert/16015273-013/2016 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1625/1644 (98%) EPI1019870 A/T_Dk/NL-Zuidoost Beemster/16014148-009/2016 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1625/1644 (98%) EPI1019862 A/T_Dk/NL-Zuidoost Beemster/16014148-002/2016 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1625/1644 (98%) EPI1019790 A/T_Dk/NL-Rotterdam/16014155-001/2016 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1625/1644 (98%) EPI1019782 A/T_Dk/NL-Roggebotsluis/16014462-015/2016 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1625/1644 (98%) EPI1019774 A/T_Dk/NL-Monnickendam/16013865-006-008/2016 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1625/1644 (98%) EPI1019758 A/Sea_eagle/NL-Assen/16015398-002/2016 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1625/1644 (98%) EPI1019750 A/P_falcon/NL-Vrouwenpolder (Zeeland)/16015510-001/2016 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1625/1644 (98%) EPI1019726 A/Magpie/NL-Volendam/16014331-002/2016 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1625/1644 (98%) EPI1019710 A/L-bl-ba-gull/NL-Sovon/16014324-014/2016 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1625/1644 (98%) EPI1019702 A/Gull10/NL-Marker Wadden/16014466-014/2016 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1625/1644 (98%) EPI1019670 A/Gr_bk_bd_gull/NL-Slootdorp/16014102-005/2016 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1625/1644 (98%) EPI1019542 A/Eur_Wig/NL-Ferwert/16015273-002/2016 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1625/1644 (98%) EPI1019446 A/Crow/NL-Oostwoud/16015372-004/2016 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1625/1644 (98%) EPI1019382 A/Buzzard/NL-Durgerdam/16015100-004/2016 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1625/1644 (98%) EPI964917 A/chicken/Czech Republic/206-17_2/2017 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1625/1644 (98%) EPI954837 A/Mute swan/Hungary/3137/2017 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1625/1644 (98%) EPI954783 A/Common_tern/Hungary/8187/2017 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1625/1644 (98%) EPI954671 A/Duck/Hungary/1588/2017 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1625/1644 (98%) EPI922508 A/chicken/Germany-NI/R11406/2016 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1625/1644 (98%) EPI909420 A/chicken/Voronezh/20/2017 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1625/1644 (98%) EPI909412 A/chicken/Voronezh/19/2017 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1625/1644 (98%) Report
December 26, 20178 yr Author comment_12999 Descriptions Align Segment-ID Name Score E-Value Identity EPI1129918 A/Great Black-backed Gull/Netherlands/2/2017 (A/H5N6) segment 6 (NA) 2473.8 0.000000e+00 1339/1339 (100%) EPI1129917 A/Great Black-backed Gull/Netherlands/1/2017 (A/H5N6) segment 6 (NA) 2411.0 0.000000e+00 1315/1320 (99%) EPI1122895 A/chicken/Greece/39_2017b/2017 (A/H5N6) segment 6 (NA) 2329.7 0.000000e+00 1313/1339 (98%) EPI1122887 A/chicken/Greece/39_2017a/2017 (A/H5N6) segment 6 (NA) 2326.1 0.000000e+00 1312/1339 (97%) EPI1122879 A/chicken/Greece/39_2017/2017 (A/H5N6) segment 6 (NA) 2326.1 0.000000e+00 1312/1339 (97%) EPI1119073 A/spoonbill/Taiwan/DB645/2017 (A/H5N6) segment 6 (NA) 2291.0 0.000000e+00 1306/1339 (97%) EPI1127540 A/mute swan/Shimane/3211A001/2017 (A/H5N6) segment 6 (NA) 2279.9 0.000000e+00 1304/1339 (97%) EPI1011098 A/barnacle goose/Netherlands/2/2014 (A/H3N6) segment 6 (NA) 2268.8 0.000000e+00 1304/1341 (97%) EPI1036189 A/duck/Moscow/4652/2011 (A/H4N6) segment 6 (NA) 2187.6 0.000000e+00 1289/1341 (96%) EPI890326 A/mallard duck/Netherlands/19/2012 (A/H4N6) segment 6 (NA) 2169.1 0.000000e+00 1286/1341 (95%) EPI1036196 A/duck/Moscow/4781/2012 (A/H4N6) segment 6 (NA) 2163.5 0.000000e+00 1285/1341 (95%) EPI891032 A/mallard duck/Netherlands/30/2014 (A/H4N6) segment 6 (NA) 2108.1 0.000000e+00 1276/1342 (95%) EPI823917 A/teal/Chany Lake/106_ cloaca/2012 (A/H4N6) segment 6 (NA) 2108.1 0.000000e+00 1277/1343 (95%) EPI823909 A/teal/Chany Lake/104_ feather/2012 (A/H4N6) segment 6 (NA) 2108.1 0.000000e+00 1277/1343 (95%) EPI823901 A/teal/Chany Lake/104_cloaca/2012 (A/H4N6) segment 6 (NA) 2108.1 0.000000e+00 1277/1343 (95%) EPI823790 A/shoveller/Chany Lake/101/2012 (A/H4N6) segment 6 (NA) 2108.1 0.000000e+00 1277/1343 (95%) EPI485322 A/eurasian wigeon/Mongolia/340V/2009 (A/H4N6) segment 6 (NA) 2102.6 0.000000e+00 1275/1342 (95%) EPI470232 A/duck/Yunnan/87/2007 (A/H7N6) segment 6 (NA) 2102.6 0.000000e+00 1275/1342 (95%) EPI692466 A/duck/Henan/S1091/2010 (A/H4N6) segment 6 (NA) 2097.1 0.000000e+00 1274/1342 (94%) EPI533781 A/Caspian seal/Russia/T1/2012 (A/H4N6) segment 6 (NA) 2097.1 0.000000e+00 1274/1342 (94%) EPI533775 A/Caspian seal/Russia/1884/2002 (A/H4N6) segment 6 (NA) 2097.1 0.000000e+00 1274/1342 (94%) EPI1014700 A/mallard duck/Netherlands/7/2006 (A/H10N6) segment 6 (NA) 2086.0 0.000000e+00 1272/1342 (94%) EPI692506 A/duck/Hunan/S1012/2009 (A/H4N6) segment 6 (NA) 2086.0 0.000000e+00 1272/1342 (94%) EPI1013418 A/mallard duck/Netherlands/8/2006 (A/H10N6) segment 6 (NA) 2080.4 0.000000e+00 1271/1342 (94%) EPI692346 A/chicken/Hunan/S1267/2010 (A/H4N6) segment 6 (NA) 2080.4 0.000000e+00 1271/1342 (94%) EPI692338 A/chicken/Hunan/S1248/2010 (A/H4N6) segment 6 (NA) 2080.4 0.000000e+00 1271/1342 (94%) EPI414148 A/duck/Jiangsu/4/2010 (A/H3N6) segment 6 (NA) 2080.4 0.000000e+00 1271/1342 (94%) EPI401303 A/duck/Korea/DY104/2007 (A/H4N6) segment 6 (NA) 2080.4 0.000000e+00 1271/1342 (94%) EPI296530 A/mallard/Netherlands/4/2006 (A/H10N6) segment 6 (NA) 2080.4 0.000000e+00 1271/1342 (94%) EPI407862 A/Khaki Campbell duck/Karachi/NARC-23963/2010 (A/H4N6) segment 6 (NA) 2076.8 0.000000e+00 1270/1342 (94%) EPI372354 A/teal/Egypt/09888-NAMRU3/2005 (A/H4N6) segment 6 (NA) 2076.8 0.000000e+00 1271/1342 (94%) EPI890683 A/mallard duck/Netherlands/6/2006 (A/H4N6) segment 6 (NA) 2074.9 0.000000e+00 1270/1342 (94%) EPI395392 A/chicken/India/WB-NIV101006/2009 (A/H4N6) segment 6 (NA) 2074.9 0.000000e+00 1270/1342 (94%) EPI243479 A/duck/Vietnam/OIE-2454/2009 (A/H4N6) segment 6 (NA) 2069.4 0.000000e+00 1270/1343 (94%) EPI168523 A/common pochard/Aktau/1455/2006 (A/H4N6) segment 6 (NA) 2058.3 0.000000e+00 1268/1343 (94%) EPI168522 A/coot/Aktau/1454/2006 (A/H4N6) segment 6 (NA) 2052.7 0.000000e+00 1268/1344 (94%) EPI704432 A/duck/Mongolia/769/2015 (A/H4N6) segment 6 (NA) 2047.2 0.000000e+00 1268/1345 (94%) EPI513237 A/mallard/Sweden/104925/2009 (A/H4N6) segment 6 (NA) 2047.2 0.000000e+00 1266/1343 (94%) EPI540366 A/duck/Bangladesh/1521/2009 (A/H4N6) segment 6 (NA) 2041.7 0.000000e+00 1265/1343 (94%) EPI513749 A/mallard/Sweden/79978/2008 (A/H4N6) segment 6 (NA) 2036.1 0.000000e+00 1263/1342 (94%) EPI395393 A/chicken/India/WB-NIV101018/2009 (A/H4N6) segment 6 (NA) 2036.1 0.000000e+00 1264/1343 (94%) EPI485357 A/ruddy shelduck/Mongolia/592/2010 (A/H8N6) segment 6 (NA) 2030.6 0.000000e+00 1263/1343 (94%) EPI284397 A/mallard/Czech Republic/12652/2007 (A/H4N6) segment 6 (NA) 2030.6 0.000000e+00 1262/1342 (94%) EPI704293 A/duck/Mongolia/127/2015 (A/H4N6) segment 6 (NA) 2025.0 0.000000e+00 1264/1345 (93%) EPI704269 A/duck/Mongolia/101/2015 (A/H4N6) segment 6 (NA) 2025.0 0.000000e+00 1264/1345 (93%) EPI513568 A/mallard/Sweden/80348/2008 (A/H0) segment 6 (NA) 2025.0 0.000000e+00 1262/1343 (93%) EPI540374 A/duck/Bangladesh/1283/2008 (A/H4N6) segment 6 (NA) 2019.5 0.000000e+00 1262/1344 (93%) EPI1013677 A/mallard duck/Netherlands/10/2013 (A/H4N6) segment 6 (NA) 2014.0 0.000000e+00 1260/1343 (93%) EPI1011235 A/mallard duck/Netherlands/22/2011 (A/H4N6) segment 6 (NA) 2014.0 0.000000e+00 1260/1343 (93%) EPI965451 A/duck/Bangladesh/26974/2015 (A/H3N6) segment 6 (NA) 2014.0 0.000000e+00 1263/1346 (93%) EPI889824 A/mallard duck/Netherlands/27/2009 (A/H4N6) segment 6 (NA) 2014.0 0.000000e+00 1260/1343 (93%) EPI540358 A/duck/Bangladesh/1766/2010 (A/H4N6) segment 6 (NA) 2014.0 0.000000e+00 1259/1342 (93%) EPI513170 A/mallard/Sweden/105012/2009 (A/H4N6) segment 6 (NA) 2014.0 0.000000e+00 1260/1343 (93%) EPI463388 A/mallard/Sweden/101980/2009 (A/H4N6) segment 6 (NA) 2014.0 0.000000e+00 1260/1343 (93%) EPI463376 A/mallard/Sweden/101310/2009 (A/H4N6) segment 6 (NA) 2014.0 0.000000e+00 1260/1343 (93%) EPI463375 A/mallard/Sweden/101309/2009 (A/H4N6) segment 6 (NA) 2014.0 0.000000e+00 1260/1343 (93%) EPI965498 A/duck/Bangladesh/26920/2015 (A/H3N6) segment 6 (NA) 2008.4 0.000000e+00 1262/1346 (93%) EPI965369 A/duck/Bangladesh/26948/2015 (A/H3N6) segment 6 (NA) 2008.4 0.000000e+00 1262/1346 (93%) EPI965295 A/duck/Bangladesh/26918/2015 (A/H3N6) segment 6 (NA) 2008.4 0.000000e+00 1262/1346 (93%) EPI618783 A/mallard/Sweden/93475/2009 (A/H10N6) segment 6 (NA) 2008.4 0.000000e+00 1260/1344 (93%) EPI513546 A/mallard/Sweden/101010/2009 (A/H4N6) segment 6 (NA) 2008.4 0.000000e+00 1259/1343 (93%) EPI513461 A/mallard/Sweden/101632/2009 (A/H4N6) segment 6 (NA) 2008.4 0.000000e+00 1259/1343 (93%) EPI513454 A/mallard/Sweden/101603/2009 (A/H4N6) segment 6 (NA) 2008.4 0.000000e+00 1259/1343 (93%) EPI513433 A/mallard/Sweden/101564/2009 (A/H4N6) segment 6 (NA) 2008.4 0.000000e+00 1259/1343 (93%) EPI513431 A/mallard/Sweden/101785/2009 (A/H4N6) segment 6 (NA) 2008.4 0.000000e+00 1259/1343 (93%) EPI513415 A/mallard/Sweden/101733/2009 (A/H4N6) segment 6 (NA) 2008.4 0.000000e+00 1259/1343 (93%) EPI513408 A/mallard/Sweden/101663/2009 (A/H4N6) segment 6 (NA) 2008.4 0.000000e+00 1259/1343 (93%) EPI513394 A/mallard/Sweden/101654/2009 (A/H4N6) segment 6 (NA) 2008.4 0.000000e+00 1259/1343 (93%) EPI513358 A/mallard/Sweden/101831/2009 (A/H4N6) segment 6 (NA) 2008.4 0.000000e+00 1259/1343 (93%) EPI513341 A/mallard/Sweden/104681/2009 (A/H4N6) segment 6 (NA) 2008.4 0.000000e+00 1259/1343 (93%) EPI513230 A/mallard/Sweden/104839/2009 (A/H4N6) segment 6 (NA) 2008.4 0.000000e+00 1259/1343 (93%) EPI513163 A/mallard/Sweden/105011/2009 (A/H4N6) segment 6 (NA) 2008.4 0.000000e+00 1259/1343 (93%) EPI470233 A/wild waterfowl/Hong Kong/MPM3375/2011 (A/H7N6) segment 6 (NA) 2008.4 0.000000e+00 1258/1342 (93%) EPI463380 A/mallard/Sweden/101617/2009 (A/H4N6) segment 6 (NA) 2008.4 0.000000e+00 1259/1343 (93%) EPI463379 A/mallard/Sweden/101615/2009 (A/H4N6) segment 6 (NA) 2008.4 0.000000e+00 1259/1343 (93%) EPI463370 A/mallard/Sweden/101022/2009 (A/H4N6) segment 6 (NA) 2008.4 0.000000e+00 1259/1343 (93%) EPI463368 A/mallard/Sweden/100955/2009 (A/H4N6) segment 6 (NA) 2008.4 0.000000e+00 1259/1343 (93%) EPI461617 A/duck/Hunan/S11893/2012 (A/H4N6) segment 6 (NA) 2008.4 0.000000e+00 1259/1343 (93%) EPI692554 A/duck/Jiangxi/S2443/2012 (A/H4N6) segment 6 (NA) 2002.9 0.000000e+00 1258/1343 (93%) EPI540382 A/duck/Bangladesh/1784/2010 (A/H4N6) segment 6 (NA) 2002.9 0.000000e+00 1257/1342 (93%) EPI540350 A/duck/Bangladesh/1783/2010 (A/H4N6) segment 6 (NA) 2002.9 0.000000e+00 1257/1342 (93%) EPI514901 A/mallard/Sweden/105093/2009 (A/H4N6) segment 6 (NA) 2002.9 0.000000e+00 1258/1343 (93%) EPI513514 A/mallard/Sweden/101524/2009 (A/H4N6) segment 6 (NA) 2002.9 0.000000e+00 1259/1344 (93%) EPI513507 A/mallard/Sweden/101504/2009 (A/H4N6) segment 6 (NA) 2002.9 0.000000e+00 1258/1343 (93%) EPI513493 A/mallard/Sweden/101329/2009 (A/H4N6) segment 6 (NA) 2002.9 0.000000e+00 1258/1343 (93%) EPI513475 A/mallard/Sweden/101642/2009 (A/H4N6) segment 6 (NA) 2002.9 0.000000e+00 1258/1343 (93%) EPI513468 A/mallard/Sweden/101640/2009 (A/H4N6) segment 6 (NA) 2002.9 0.000000e+00 1259/1344 (93%) EPI513424 A/mallard/Sweden/101782/2009 (A/H0) segment 6 (NA) 2002.9 0.000000e+00 1259/1344 (93%) EPI513386 A/mallard/Sweden/102029/2009 (A/H4N6) segment 6 (NA) 2002.9 0.000000e+00 1258/1343 (93%) EPI513379 A/mallard/Sweden/102024/2009 (A/H4N6) segment 6 (NA) 2002.9 0.000000e+00 1258/1343 (93%) EPI513334 A/mallard/Sweden/102157/2009 (A/H4N6) segment 6 (NA) 2002.9 0.000000e+00 1258/1343 (93%) EPI513327 A/mallard/Sweden/102124/2009 (A/H4N6) segment 6 (NA) 2002.9 0.000000e+00 1259/1344 (93%) EPI513320 A/mallard/Sweden/102114/2009 (A/H4N6) segment 6 (NA) 2002.9 0.000000e+00 1258/1343 (93%) EPI513306 A/mallard/Sweden/102045/2009 (A/H4N6) segment 6 (NA) 2002.9 0.000000e+00 1258/1343 (93%) EPI513244 A/mallard/Sweden/104931/2009 (A/H4N6) segment 6 (NA) 2002.9 0.000000e+00 1258/1343 (93%) EPI513216 A/mallard/Sweden/104793/2009 (A/H4N6) segment 6 (NA) 2002.9 0.000000e+00 1259/1344 (93%) EPI513209 A/mallard/Sweden/104690/2009 (A/H4N6) segment 6 (NA) 2002.9 0.000000e+00 1259/1344 (93%) EPI513205 A/mallard/Sweden/102250/2009 (A/H4N6) segment 6 (NA) 2002.9 0.000000e+00 1259/1344 (93%) EPI513184 A/mallard/Sweden/105516/2009 (A/H4N6) segment 6 (NA) 2002.9 0.000000e+00 1258/1343 (93%) EPI513177 A/mallard/Sweden/105137/2009 (A/H4N6) segment 6 (NA) 2002.9 0.000000e+00 1258/1343 (93%) Report
December 26, 20178 yr Author comment_13000 Isolate detail Isolate name: A/Great Black-backed Gull/Netherlands/1/2017 Isolate ID: EPI_ISL_289500 Passage details/history: Original material (swab) Type: A / H5N6 Lineage: Sample information Collection date: 2017-12-18 Host Larus marinus Additional host information: Domestic status: Wild Is vaccinated: Location: Netherlands / Provincie Noord-Holland Additional location information: Health status: Dead Specimen source: Strain or commercial product name used for vaccination: Institute information Originating lab: Erasmus Medical Center Sample ID given by the sample provider: 320-157 Address: Erasmus Medical Center Department of Virology Dr. Molewaterplein 50 3015GE Rotterdam Netherlands Submitting lab: Erasmus Medical Center Sample ID given by the submitting laboratory: 320-157 Authors: Poen,MJ; Van Der Jeugd,HP; Kelder,L; Scheuer,RD; Bestebroer,TM; Koopmans,MPG; Fouchier,RAM Address: Erasmus Medical Center Department of Virology Dr. Molewaterplein 50 3015GE Rotterdam Netherlands Publication Publication In vivo antiviral resistance Phenotype Genotype Unspecified Antiviral resistance tested by experimental procedures Adamantanes: Unknown Oseltamivir: Unknown Zanamivir: Unknown Peramivir: Unknown Other: Unknown Additional information Antigenic characterization: Note: Sequence segment identifier length accession # INSDC Sequence HA A/Great Black-backed Gull/Netherlands/1/2017 1639 EPI1129916 NA A/Great Black-backed Gull/Netherlands/1/2017 1322 EPI1129917 Submitter information Submitter: Poen, Maria Johanna Submission Date: 2017-12-22 Last modifier: Poen, Maria Johanna Last modified: 2017-12-22 Address: Erasmus Medical Center Department of Virology Dr. Molewaterplein 50 3015GE Rotterdam Netherlands Report
December 26, 20178 yr Author comment_13001 Descriptions Align Segment-ID Name Score E-Value Identity EPI1129916 A/Great Black-backed Gull/Netherlands/1/2017 (A/H5N6) segment 4 (HA) 3027.8 0.000000e+00 1639/1639 (100%) EPI1129919 A/Great Black-backed Gull/Netherlands/2/2017 (A/H5N6) segment 4 (HA) 2977.9 0.000000e+00 1628/1636 (99%) EPI1019638 A/Eur_Wig/NL-Zoeterwoude/16015702-010/2016 (A/H5N8) segment 4 (HA) 2950.2 0.000000e+00 1625/1639 (99%) EPI1019590 A/Eur_Wig/NL-Reeuwijk/16015903-003/2016 (A/H5N8) segment 4 (HA) 2950.2 0.000000e+00 1625/1639 (99%) EPI1019582 A/Eur_Wig/NL-Leidschendam/16015697-007/2016 (A/H5N8) segment 4 (HA) 2950.2 0.000000e+00 1625/1639 (99%) EPI1019550 A/Eur_Wig/NL-Gouda/16015824-001/2016 (A/H5N8) segment 4 (HA) 2950.2 0.000000e+00 1625/1639 (99%) EPI1019518 A/Eur_Wig/NL-De Waal (Texel)/16014891-004/2016 (A/H5N8) segment 4 (HA) 2950.2 0.000000e+00 1625/1639 (99%) EPI1019510 A/Eur_Wig/NL-De Waal (Texel)/16014891-003/2016 (A/H5N8) segment 4 (HA) 2950.2 0.000000e+00 1625/1639 (99%) EPI943320 A/pochard_duck/England/SA12_157809/2016 (A/H5N8) segment 4 (HA) 2950.2 0.000000e+00 1625/1639 (99%) EPI1019734 A/Mal/NL-IJsselmuiden/16015448-002/2016 (A/H5N8) segment 4 (HA) 2944.7 0.000000e+00 1624/1639 (99%) EPI1019678 A/Grey_Go/NL-Groot-Ammers/16015901-012/2016 (A/H5N8) segment 4 (HA) 2944.7 0.000000e+00 1624/1639 (99%) EPI1019646 A/Eur_Wig/NL-Zwolle/16015820-002/2016 (A/H5N8) segment 4 (HA) 2944.7 0.000000e+00 1624/1639 (99%) EPI1019622 A/Eur_Wig/NL-West Graftdijk/16015746-003/2016 (A/H5N8) segment 4 (HA) 2944.7 0.000000e+00 1624/1639 (99%) EPI1019606 A/Eur_Wig/NL-Vianen/16015917-006/2016 (A/H5N8) segment 4 (HA) 2944.7 0.000000e+00 1624/1639 (99%) EPI1019430 A/Ch/NL-Rhenen/16016141-006/2016 (A/H5N8) segment 4 (HA) 2944.7 0.000000e+00 1624/1639 (99%) EPI1019406 A/Ch/NL-Boven Leeuwen/16016151-006-010/2016 (A/H5N8) segment 4 (HA) 2944.7 0.000000e+00 1624/1639 (99%) EPI942943 A/chicken/Wales/000023/2016 (A/H5N8) segment 4 (HA) 2944.7 0.000000e+00 1624/1639 (99%) EPI1019478 A/Dk/NL-Kamperveen/16016104-001-005/2016 (A/H5N8) segment 4 (HA) 2939.1 0.000000e+00 1623/1639 (99%) EPI1019438 A/Ch/NL-Zoeterwoude/16016484-021-025/2016 (A/H5N8) segment 4 (HA) 2939.1 0.000000e+00 1623/1639 (99%) EPI954583 A/chicken/Italy/17VIR653-12/2017 (A/H5N8) segment 4 (HA) 2939.1 0.000000e+00 1623/1639 (99%) EPI868848 A/turkey/England/052131/2016 (A/H5N8) segment 4 (HA) 2939.1 0.000000e+00 1623/1639 (99%) EPI1019630 A/Eur_Wig/NL-Wormer/16016143-002/2016 (A/H5N8) segment 4 (HA) 2933.6 0.000000e+00 1622/1639 (98%) EPI1019614 A/Eur_Wig/NL-Walterswald/16015923-003/2016 (A/H5N8) segment 4 (HA) 2933.6 0.000000e+00 1622/1639 (98%) EPI1019534 A/Eur_Wig/NL-Enumatil-Groningen/16015704-001/2016 (A/H5N8) segment 4 (HA) 2933.6 0.000000e+00 1622/1639 (98%) EPI1019398 A/Ch/NL-Abbega/X16015736/2016 (A/H5N8) segment 4 (HA) 2933.6 0.000000e+00 1622/1639 (98%) EPI1007675 A/peacock/Belgium/1017/2017 (A/H5N8) segment 4 (HA) 2933.6 0.000000e+00 1622/1639 (98%) EPI990770 A/eurasian wigeon/Germany-NI/AR249-L02143/2017 (A/H5N8) segment 4 (HA) 2933.6 0.000000e+00 1622/1639 (98%) EPI954877 A/Mallard/Hungary/1574a/2017 (A/H5N8) segment 4 (HA) 2933.6 0.000000e+00 1622/1639 (98%) EPI954861 A/Mallard/Hungary/1574b/2017 (A/H5N8) segment 4 (HA) 2933.6 0.000000e+00 1622/1639 (98%) EPI954607 A/turkey/Italy/17VIR1452-22/2017 (A/H5N8) segment 4 (HA) 2933.6 0.000000e+00 1622/1639 (98%) EPI954575 A/turkey/Italy/17VIR576-11/2017 (A/H5N8) segment 4 (HA) 2933.6 0.000000e+00 1622/1639 (98%) EPI954559 A/swan/Italy/17VIR537-2/2017 (A/H5N8) segment 4 (HA) 2933.6 0.000000e+00 1622/1639 (98%) EPI869687 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 4 (HA) 2929.9 0.000000e+00 1621/1639 (98%) EPI1045611 A/chicken/Rostov/44/2017 (A/H5N8) segment 4 (HA) 2928.1 0.000000e+00 1621/1639 (98%) EPI1019526 A/Eur_Wig/NL-Drieborg (Dollard)/16015513-001/2016 (A/H5N8) segment 4 (HA) 2928.1 0.000000e+00 1621/1639 (98%) EPI990794 A/greylag goose/Germany-NI/AR1395-L02144/2017 (A/H5N8) segment 4 (HA) 2928.1 0.000000e+00 1621/1639 (98%) EPI969347 A/turkey/Germany-BB/R377ff/2017 (A/H5N8) segment 4 (HA) 2928.1 0.000000e+00 1621/1639 (98%) EPI961449 A/gadwall/Kurgan/2442/2016 (A/H5N8) segment 4 (HA) 2928.1 0.000000e+00 1621/1639 (98%) EPI954813 A/Greylag_goose/Hungary/320/2017 (A/H5N8) segment 4 (HA) 2928.1 0.000000e+00 1621/1639 (98%) EPI942935 A/turkey/England/003778/2017 (A/H5N8) segment 4 (HA) 2928.1 0.000000e+00 1621/1639 (98%) EPI909452 A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 4 (HA) 2928.1 0.000000e+00 1621/1639 (98%) EPI909444 A/mute swan/Krasnodar/25/2017 (A/H5N8) segment 4 (HA) 2928.1 0.000000e+00 1621/1639 (98%) EPI869931 A/turkey/Poland/83/2016 (A/H5N8) segment 4 (HA) 2928.1 0.000000e+00 1621/1639 (98%) EPI869930 A/turkey/Poland/78/2016 (A/H5N8) segment 4 (HA) 2928.1 0.000000e+00 1621/1639 (98%) EPI873659 A/Eurasian wigeon/Netherlands/1/2016 (A/H5N8) segment 4 (HA) 2924.4 0.000000e+00 1620/1639 (98%) EPI1019718 A/M_Swan/NL-Roggebotsluis/16014462-019/2016 (A/H5N8) segment 4 (HA) 2922.5 0.000000e+00 1620/1639 (98%) EPI1019558 A/Eur_Wig/NL-Greonterp/16015653-001/2016 (A/H5N8) segment 4 (HA) 2922.5 0.000000e+00 1620/1639 (98%) EPI1019494 A/Dk/NL-Stolwijk/16016291-016-020/2016 (A/H5N8) segment 4 (HA) 2922.5 0.000000e+00 1620/1639 (98%) EPI1007667 A/chicken/Belgium/807/2017 (A/H5N8) segment 4 (HA) 2922.5 0.000000e+00 1620/1639 (98%) EPI990802 A/greylag goose/Germany-NI/AR703-L02138/2017 (A/H5N8) segment 4 (HA) 2922.5 0.000000e+00 1620/1639 (98%) EPI916604 A/bronze turkey/Czech Republic/1414-17/2017 (H5N8) (A/H5N8) segment 4 (HA) 2922.5 0.000000e+00 1620/1639 (98%) EPI909436 A/goose/Krasnodar/3144/2017 (A/H5N8) segment 4 (HA) 2922.5 0.000000e+00 1620/1639 (98%) EPI907346 A/domestic duck/Germany-BB/R681ff/2017 (A/H5N8) segment 4 (HA) 2922.5 0.000000e+00 1620/1639 (98%) EPI859650 A/wild duck/Germany-BW/R8455/2016 (A/H5N8) segment 4 (HA) 2922.5 0.000000e+00 1620/1639 (98%) EPI1040223 A/chicken/Italy/17VIR3078/2017 (A/H5N8) segment 4 (HA) 2918.8 0.000000e+00 1619/1639 (98%) EPI1061371 A/chicken/Belgium/5990/2017 (A/H5N8) segment 4 (HA) 2917.0 0.000000e+00 1619/1639 (98%) EPI1021106 A/mute swan/Czech Republic/1296-17_1/2017 (H5N8) (A/H5N8) segment 4 (HA) 2917.0 0.000000e+00 1619/1639 (98%) EPI1019766 A/T_Dk/NL-Almeerder Zand/16014341-003/2016 (A/H5N8) segment 4 (HA) 2917.0 0.000000e+00 1619/1639 (98%) EPI969254 A/Tufted Duck/Switzerland/V237/2016 (A/H5N8) segment 4 (HA) 2917.0 0.000000e+00 1619/1639 (98%) EPI931207 A/turkey/Germany-BB/R234ff/2017 (A/H5N8) segment 4 (HA) 2917.0 0.000000e+00 1619/1639 (98%) EPI931145 A/duck/Czech Republic/1467-17/2017 (H5N8) (A/H5N8) segment 4 (HA) 2917.0 0.000000e+00 1619/1639 (98%) EPI909428 A/turkey/Rostov/11/2017 (A/H5N8) segment 4 (HA) 2917.0 0.000000e+00 1619/1639 (98%) EPI909404 A/chicken/Voronezh/18/2017 (A/H5N8) segment 4 (HA) 2917.0 0.000000e+00 1619/1639 (98%) EPI909396 A/long-eared owl/Voronezh/16/2017 (A/H5N8) segment 4 (HA) 2917.0 0.000000e+00 1619/1639 (98%) EPI909388 A/Ural owl/Voronezh/14/2017 (A/H5N8) segment 4 (HA) 2917.0 0.000000e+00 1619/1639 (98%) EPI909380 A/long-eared owl/Voronezh/15/2017 (A/H5N8) segment 4 (HA) 2917.0 0.000000e+00 1619/1639 (98%) EPI888088 A/wigeon/Italy/17VIR57-3/2017 (A/H5N8) segment 4 (HA) 2917.0 0.000000e+00 1619/1639 (98%) EPI869940 A/herring gull/Poland/84/2016 (A/H5N8) segment 4 (HA) 2917.0 0.000000e+00 1619/1639 (98%) EPI869936 A/chicken/Kalmykia/2661/2016 (A/H5N8) segment 4 (HA) 2917.0 0.000000e+00 1619/1639 (98%) EPI861011 A/turkey/Germany-SH/R8595/2016 (A/H5N8) segment 4 (HA) 2917.0 0.000000e+00 1619/1639 (98%) EPI860401 A/tufted_duck/Germany/AR8459-L01988/2016 (A/H5N8) segment 4 (HA) 2917.0 0.000000e+00 1619/1639 (98%) EPI859653 A/tufted_duck/Germany/AR8444-L01986/2016 (A/H5N8) segment 4 (HA) 2917.0 0.000000e+00 1619/1639 (98%) EPI859212 A/tufted_duck/Germany-SH/R8446/2016 (A/H5N8) segment 4 (HA) 2917.0 0.000000e+00 1619/1639 (98%) EPI978865 A/mute swan/Germany-TH/R1126/2017 (A/H5N8) segment 4 (HA) 2913.3 0.000000e+00 1618/1639 (98%) EPI909364 A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 4 (HA) 2913.3 0.000000e+00 1618/1639 (98%) EPI869924 A/domestic goose/Poland/33/2016 (A/H5N8) segment 4 (HA) 2913.3 0.000000e+00 1618/1639 (98%) EPI1061370 A/Brahma chicken/Belgium/6153/2017 (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1618/1639 (98%) EPI1021132 A/goose/Czech Republic/1954-17/2017 (H5N8) (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1618/1639 (98%) EPI1019878 A/Teal/NL-Ferwert/16015273-013/2016 (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1618/1639 (98%) EPI1019870 A/T_Dk/NL-Zuidoost Beemster/16014148-009/2016 (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1618/1639 (98%) EPI1019862 A/T_Dk/NL-Zuidoost Beemster/16014148-002/2016 (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1618/1639 (98%) EPI1019790 A/T_Dk/NL-Rotterdam/16014155-001/2016 (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1618/1639 (98%) EPI1019782 A/T_Dk/NL-Roggebotsluis/16014462-015/2016 (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1618/1639 (98%) EPI1019774 A/T_Dk/NL-Monnickendam/16013865-006-008/2016 (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1618/1639 (98%) EPI1019758 A/Sea_eagle/NL-Assen/16015398-002/2016 (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1618/1639 (98%) EPI1019750 A/P_falcon/NL-Vrouwenpolder (Zeeland)/16015510-001/2016 (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1618/1639 (98%) EPI1019726 A/Magpie/NL-Volendam/16014331-002/2016 (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1618/1639 (98%) EPI1019710 A/L-bl-ba-gull/NL-Sovon/16014324-014/2016 (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1618/1639 (98%) EPI1019702 A/Gull10/NL-Marker Wadden/16014466-014/2016 (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1618/1639 (98%) EPI1019670 A/Gr_bk_bd_gull/NL-Slootdorp/16014102-005/2016 (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1618/1639 (98%) EPI1019542 A/Eur_Wig/NL-Ferwert/16015273-002/2016 (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1618/1639 (98%) EPI1019446 A/Crow/NL-Oostwoud/16015372-004/2016 (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1618/1639 (98%) EPI1019382 A/Buzzard/NL-Durgerdam/16015100-004/2016 (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1618/1639 (98%) EPI978863 A/grey heron/Germany-TH/R1125/2017 (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1618/1639 (98%) EPI964917 A/chicken/Czech Republic/206-17_2/2017 (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1618/1639 (98%) EPI954837 A/Mute swan/Hungary/3137/2017 (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1618/1639 (98%) EPI954783 A/Common_tern/Hungary/8187/2017 (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1618/1639 (98%) EPI954671 A/Duck/Hungary/1588/2017 (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1618/1639 (98%) EPI922508 A/chicken/Germany-NI/R11406/2016 (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1618/1639 (98%) EPI909420 A/chicken/Voronezh/20/2017 (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1618/1639 (98%) Report
December 26, 20178 yr Author comment_13002 Descriptions Align Segment-ID Name Score E-Value Identity EPI1129917 A/Great Black-backed Gull/Netherlands/1/2017 (A/H5N6) segment 6 (NA) 2442.4 0.000000e+00 1322/1322 (100%) EPI1129918 A/Great Black-backed Gull/Netherlands/2/2017 (A/H5N6) segment 6 (NA) 2411.0 0.000000e+00 1315/1320 (99%) EPI1122895 A/chicken/Greece/39_2017b/2017 (A/H5N6) segment 6 (NA) 2292.8 0.000000e+00 1295/1322 (97%) EPI1122887 A/chicken/Greece/39_2017a/2017 (A/H5N6) segment 6 (NA) 2289.1 0.000000e+00 1294/1322 (97%) EPI1122879 A/chicken/Greece/39_2017/2017 (A/H5N6) segment 6 (NA) 2289.1 0.000000e+00 1294/1322 (97%) EPI1119073 A/spoonbill/Taiwan/DB645/2017 (A/H5N6) segment 6 (NA) 2259.6 0.000000e+00 1289/1322 (97%) EPI1127540 A/mute swan/Shimane/3211A001/2017 (A/H5N6) segment 6 (NA) 2248.5 0.000000e+00 1287/1322 (97%) EPI1011098 A/barnacle goose/Netherlands/2/2014 (A/H3N6) segment 6 (NA) 2231.9 0.000000e+00 1286/1324 (97%) EPI1036189 A/duck/Moscow/4652/2011 (A/H4N6) segment 6 (NA) 2150.6 0.000000e+00 1269/1321 (96%) EPI890326 A/mallard duck/Netherlands/19/2012 (A/H4N6) segment 6 (NA) 2143.2 0.000000e+00 1268/1321 (95%) EPI1036196 A/duck/Moscow/4781/2012 (A/H4N6) segment 6 (NA) 2126.6 0.000000e+00 1265/1321 (95%) EPI891032 A/mallard duck/Netherlands/30/2014 (A/H4N6) segment 6 (NA) 2071.2 0.000000e+00 1256/1322 (95%) EPI823917 A/teal/Chany Lake/106_ cloaca/2012 (A/H4N6) segment 6 (NA) 2071.2 0.000000e+00 1257/1323 (95%) EPI823909 A/teal/Chany Lake/104_ feather/2012 (A/H4N6) segment 6 (NA) 2071.2 0.000000e+00 1257/1323 (95%) EPI823901 A/teal/Chany Lake/104_cloaca/2012 (A/H4N6) segment 6 (NA) 2071.2 0.000000e+00 1257/1323 (95%) EPI823790 A/shoveller/Chany Lake/101/2012 (A/H4N6) segment 6 (NA) 2071.2 0.000000e+00 1257/1323 (95%) EPI485322 A/eurasian wigeon/Mongolia/340V/2009 (A/H4N6) segment 6 (NA) 2065.7 0.000000e+00 1255/1322 (94%) EPI470232 A/duck/Yunnan/87/2007 (A/H7N6) segment 6 (NA) 2065.7 0.000000e+00 1255/1322 (94%) EPI692466 A/duck/Henan/S1091/2010 (A/H4N6) segment 6 (NA) 2060.1 0.000000e+00 1254/1322 (94%) EPI533781 A/Caspian seal/Russia/T1/2012 (A/H4N6) segment 6 (NA) 2060.1 0.000000e+00 1254/1322 (94%) EPI533775 A/Caspian seal/Russia/1884/2002 (A/H4N6) segment 6 (NA) 2060.1 0.000000e+00 1254/1322 (94%) EPI692506 A/duck/Hunan/S1012/2009 (A/H4N6) segment 6 (NA) 2049.1 0.000000e+00 1252/1322 (94%) EPI1014700 A/mallard duck/Netherlands/7/2006 (A/H10N6) segment 6 (NA) 2043.5 0.000000e+00 1251/1322 (94%) EPI692346 A/chicken/Hunan/S1267/2010 (A/H4N6) segment 6 (NA) 2043.5 0.000000e+00 1251/1322 (94%) EPI692338 A/chicken/Hunan/S1248/2010 (A/H4N6) segment 6 (NA) 2043.5 0.000000e+00 1251/1322 (94%) EPI414148 A/duck/Jiangsu/4/2010 (A/H3N6) segment 6 (NA) 2043.5 0.000000e+00 1253/1325 (94%) EPI401303 A/duck/Korea/DY104/2007 (A/H4N6) segment 6 (NA) 2043.5 0.000000e+00 1251/1322 (94%) EPI407862 A/Khaki Campbell duck/Karachi/NARC-23963/2010 (A/H4N6) segment 6 (NA) 2039.8 0.000000e+00 1250/1322 (94%) EPI372354 A/teal/Egypt/09888-NAMRU3/2005 (A/H4N6) segment 6 (NA) 2039.8 0.000000e+00 1251/1322 (94%) EPI1013418 A/mallard duck/Netherlands/8/2006 (A/H10N6) segment 6 (NA) 2038.0 0.000000e+00 1250/1322 (94%) EPI395392 A/chicken/India/WB-NIV101006/2009 (A/H4N6) segment 6 (NA) 2038.0 0.000000e+00 1250/1322 (94%) EPI296530 A/mallard/Netherlands/4/2006 (A/H10N6) segment 6 (NA) 2038.0 0.000000e+00 1250/1322 (94%) EPI890683 A/mallard duck/Netherlands/6/2006 (A/H4N6) segment 6 (NA) 2032.4 0.000000e+00 1249/1322 (94%) EPI243479 A/duck/Vietnam/OIE-2454/2009 (A/H4N6) segment 6 (NA) 2032.4 0.000000e+00 1250/1323 (94%) EPI513237 A/mallard/Sweden/104925/2009 (A/H4N6) segment 6 (NA) 2021.4 0.000000e+00 1248/1323 (94%) EPI168523 A/common pochard/Aktau/1455/2006 (A/H4N6) segment 6 (NA) 2021.4 0.000000e+00 1248/1323 (94%) EPI168522 A/coot/Aktau/1454/2006 (A/H4N6) segment 6 (NA) 2015.8 0.000000e+00 1248/1324 (94%) EPI704432 A/duck/Mongolia/769/2015 (A/H4N6) segment 6 (NA) 2010.3 0.000000e+00 1248/1325 (94%) EPI540366 A/duck/Bangladesh/1521/2009 (A/H4N6) segment 6 (NA) 2004.7 0.000000e+00 1245/1323 (94%) EPI513749 A/mallard/Sweden/79978/2008 (A/H4N6) segment 6 (NA) 1999.2 0.000000e+00 1243/1322 (94%) EPI513568 A/mallard/Sweden/80348/2008 (A/H0) segment 6 (NA) 1999.2 0.000000e+00 1244/1323 (94%) EPI395393 A/chicken/India/WB-NIV101018/2009 (A/H4N6) segment 6 (NA) 1999.2 0.000000e+00 1244/1323 (94%) EPI485357 A/ruddy shelduck/Mongolia/592/2010 (A/H8N6) segment 6 (NA) 1993.7 0.000000e+00 1243/1323 (93%) EPI284397 A/mallard/Czech Republic/12652/2007 (A/H4N6) segment 6 (NA) 1993.7 0.000000e+00 1242/1322 (93%) EPI1013677 A/mallard duck/Netherlands/10/2013 (A/H4N6) segment 6 (NA) 1988.1 0.000000e+00 1242/1323 (93%) EPI1011235 A/mallard duck/Netherlands/22/2011 (A/H4N6) segment 6 (NA) 1988.1 0.000000e+00 1242/1323 (93%) EPI704293 A/duck/Mongolia/127/2015 (A/H4N6) segment 6 (NA) 1988.1 0.000000e+00 1244/1325 (93%) EPI704269 A/duck/Mongolia/101/2015 (A/H4N6) segment 6 (NA) 1988.1 0.000000e+00 1244/1325 (93%) EPI540374 A/duck/Bangladesh/1283/2008 (A/H4N6) segment 6 (NA) 1982.6 0.000000e+00 1242/1324 (93%) EPI965451 A/duck/Bangladesh/26974/2015 (A/H3N6) segment 6 (NA) 1977.0 0.000000e+00 1243/1326 (93%) EPI889824 A/mallard duck/Netherlands/27/2009 (A/H4N6) segment 6 (NA) 1977.0 0.000000e+00 1240/1323 (93%) EPI540358 A/duck/Bangladesh/1766/2010 (A/H4N6) segment 6 (NA) 1977.0 0.000000e+00 1239/1322 (93%) EPI513170 A/mallard/Sweden/105012/2009 (A/H4N6) segment 6 (NA) 1977.0 0.000000e+00 1240/1323 (93%) EPI463388 A/mallard/Sweden/101980/2009 (A/H4N6) segment 6 (NA) 1977.0 0.000000e+00 1240/1323 (93%) EPI463376 A/mallard/Sweden/101310/2009 (A/H4N6) segment 6 (NA) 1977.0 0.000000e+00 1240/1323 (93%) EPI463375 A/mallard/Sweden/101309/2009 (A/H4N6) segment 6 (NA) 1977.0 0.000000e+00 1240/1323 (93%) EPI965498 A/duck/Bangladesh/26920/2015 (A/H3N6) segment 6 (NA) 1971.5 0.000000e+00 1242/1326 (93%) EPI965369 A/duck/Bangladesh/26948/2015 (A/H3N6) segment 6 (NA) 1971.5 0.000000e+00 1242/1326 (93%) EPI965295 A/duck/Bangladesh/26918/2015 (A/H3N6) segment 6 (NA) 1971.5 0.000000e+00 1242/1326 (93%) EPI618783 A/mallard/Sweden/93475/2009 (A/H10N6) segment 6 (NA) 1971.5 0.000000e+00 1240/1324 (93%) EPI513546 A/mallard/Sweden/101010/2009 (A/H4N6) segment 6 (NA) 1971.5 0.000000e+00 1239/1323 (93%) EPI513461 A/mallard/Sweden/101632/2009 (A/H4N6) segment 6 (NA) 1971.5 0.000000e+00 1239/1323 (93%) EPI513454 A/mallard/Sweden/101603/2009 (A/H4N6) segment 6 (NA) 1971.5 0.000000e+00 1239/1323 (93%) EPI513433 A/mallard/Sweden/101564/2009 (A/H4N6) segment 6 (NA) 1971.5 0.000000e+00 1239/1323 (93%) EPI513431 A/mallard/Sweden/101785/2009 (A/H4N6) segment 6 (NA) 1971.5 0.000000e+00 1239/1323 (93%) EPI513415 A/mallard/Sweden/101733/2009 (A/H4N6) segment 6 (NA) 1971.5 0.000000e+00 1239/1323 (93%) EPI513408 A/mallard/Sweden/101663/2009 (A/H4N6) segment 6 (NA) 1971.5 0.000000e+00 1239/1323 (93%) EPI513394 A/mallard/Sweden/101654/2009 (A/H4N6) segment 6 (NA) 1971.5 0.000000e+00 1239/1323 (93%) EPI513358 A/mallard/Sweden/101831/2009 (A/H4N6) segment 6 (NA) 1971.5 0.000000e+00 1239/1323 (93%) EPI513341 A/mallard/Sweden/104681/2009 (A/H4N6) segment 6 (NA) 1971.5 0.000000e+00 1239/1323 (93%) EPI513230 A/mallard/Sweden/104839/2009 (A/H4N6) segment 6 (NA) 1971.5 0.000000e+00 1239/1323 (93%) EPI513163 A/mallard/Sweden/105011/2009 (A/H4N6) segment 6 (NA) 1971.5 0.000000e+00 1239/1323 (93%) EPI475927 A/mallard/Iceland/1007/2011 (A/H3N6) segment 6 (NA) 1971.5 0.000000e+00 1239/1323 (93%) EPI470233 A/wild waterfowl/Hong Kong/MPM3375/2011 (A/H7N6) segment 6 (NA) 1971.5 0.000000e+00 1238/1322 (93%) EPI463380 A/mallard/Sweden/101617/2009 (A/H4N6) segment 6 (NA) 1971.5 0.000000e+00 1239/1323 (93%) EPI463379 A/mallard/Sweden/101615/2009 (A/H4N6) segment 6 (NA) 1971.5 0.000000e+00 1239/1323 (93%) EPI463370 A/mallard/Sweden/101022/2009 (A/H4N6) segment 6 (NA) 1971.5 0.000000e+00 1239/1323 (93%) EPI463368 A/mallard/Sweden/100955/2009 (A/H4N6) segment 6 (NA) 1971.5 0.000000e+00 1239/1323 (93%) EPI461617 A/duck/Hunan/S11893/2012 (A/H4N6) segment 6 (NA) 1971.5 0.000000e+00 1239/1323 (93%) EPI692554 A/duck/Jiangxi/S2443/2012 (A/H4N6) segment 6 (NA) 1966.0 0.000000e+00 1238/1323 (93%) EPI540382 A/duck/Bangladesh/1784/2010 (A/H4N6) segment 6 (NA) 1966.0 0.000000e+00 1237/1322 (93%) EPI540350 A/duck/Bangladesh/1783/2010 (A/H4N6) segment 6 (NA) 1966.0 0.000000e+00 1237/1322 (93%) EPI514901 A/mallard/Sweden/105093/2009 (A/H4N6) segment 6 (NA) 1966.0 0.000000e+00 1238/1323 (93%) EPI513514 A/mallard/Sweden/101524/2009 (A/H4N6) segment 6 (NA) 1966.0 0.000000e+00 1239/1324 (93%) EPI513507 A/mallard/Sweden/101504/2009 (A/H4N6) segment 6 (NA) 1966.0 0.000000e+00 1238/1323 (93%) EPI513493 A/mallard/Sweden/101329/2009 (A/H4N6) segment 6 (NA) 1966.0 0.000000e+00 1238/1323 (93%) EPI513475 A/mallard/Sweden/101642/2009 (A/H4N6) segment 6 (NA) 1966.0 0.000000e+00 1238/1323 (93%) EPI513468 A/mallard/Sweden/101640/2009 (A/H4N6) segment 6 (NA) 1966.0 0.000000e+00 1239/1324 (93%) EPI513424 A/mallard/Sweden/101782/2009 (A/H0) segment 6 (NA) 1966.0 0.000000e+00 1239/1324 (93%) EPI513386 A/mallard/Sweden/102029/2009 (A/H4N6) segment 6 (NA) 1966.0 0.000000e+00 1238/1323 (93%) EPI513379 A/mallard/Sweden/102024/2009 (A/H4N6) segment 6 (NA) 1966.0 0.000000e+00 1238/1323 (93%) EPI513334 A/mallard/Sweden/102157/2009 (A/H4N6) segment 6 (NA) 1966.0 0.000000e+00 1238/1323 (93%) EPI513327 A/mallard/Sweden/102124/2009 (A/H4N6) segment 6 (NA) 1966.0 0.000000e+00 1239/1324 (93%) EPI513320 A/mallard/Sweden/102114/2009 (A/H4N6) segment 6 (NA) 1966.0 0.000000e+00 1238/1323 (93%) EPI513306 A/mallard/Sweden/102045/2009 (A/H4N6) segment 6 (NA) 1966.0 0.000000e+00 1238/1323 (93%) EPI513244 A/mallard/Sweden/104931/2009 (A/H4N6) segment 6 (NA) 1966.0 0.000000e+00 1238/1323 (93%) EPI513216 A/mallard/Sweden/104793/2009 (A/H4N6) segment 6 (NA) 1966.0 0.000000e+00 1239/1324 (93%) EPI513209 A/mallard/Sweden/104690/2009 (A/H4N6) segment 6 (NA) 1966.0 0.000000e+00 1239/1324 (93%) EPI513205 A/mallard/Sweden/102250/2009 (A/H4N6) segment 6 (NA) 1966.0 0.000000e+00 1239/1324 (93%) EPI513198 A/mallard/Sweden/124418/2010 (A/H4N6) segment 6 (NA) 1966.0 0.000000e+00 1237/1322 (93%) Report
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