niman Posted December 31, 2017 Report Posted December 31, 2017 H5N6 in Greece is clade 2.3.4.4 and is similar to H5N8 except the N8 is replaced by an N6 of European origin.
niman Posted December 31, 2017 Author Report Posted December 31, 2017 Isolate detail Isolate name: A/chicken/Greece/39_2017b/2017 Isolate ID: EPI_ISL_288364 Passage details/history: Egg Passage 1 Type: A / H5N6 Lineage: Sample information Collection date: 2017-02-06 Host Gallus gallus domesticus Additional host information: Domestic status: Domestic Is vaccinated: Location: Greece Additional location information: Health status: Specimen source: Tracheal swab Strain or commercial product name used for vaccination: Institute information Originating lab: Thessalonica Veterinary Centre (TVC) Sample ID given by the sample provider: 39/2017b Address: Thessalonica Veterinary Centre (TVC) 26th October Street 80 GR-54627 Thessalonica Greece Submitting lab: Animal and Plant Health Agency (APHA) Sample ID given by the submitting laboratory: AV000624-17 AV-17-029558 Authors: Seekings, James; Ellis, Richard; Brookes, Sharon M; Essen, Stephen; Lewis, Nicola; Brown, Ian H; Dovas, C; Georgiades, D Address: Animal and Plant Health Agency (APHA) Virology Department Woodham Lane New Haw, Addlestone, Surrey KT15 3NB United Kingdom Publication Publication In vivo antiviral resistance Phenotype Genotype Unspecified Antiviral resistance tested by experimental procedures Adamantanes: Unknown Oseltamivir: Unknown Zanamivir: Unknown Peramivir: Unknown Other: Unknown Additional information Antigenic characterization: Note: Sequence segment identifier length accession # INSDC Sequence PB2 A/chicken/Greece/39_2017b/2017 2341 EPI1122890 PB1 A/chicken/Greece/39_2017b/2017 2341 EPI1122891 PA A/chicken/Greece/39_2017b/2017 2233 EPI1122892 HA A/chicken/Greece/39_2017b/2017 1776 EPI1122893 NP A/chicken/Greece/39_2017b/2017 1565 EPI1122894 NA A/chicken/Greece/39_2017b/2017 1448 EPI1122895 MP A/chicken/Greece/39_2017b/2017 1027 EPI1122896 NS A/chicken/Greece/39_2017b/2017 889 EPI1122897 Submitter information Submitter: Seekings, James Submission Date: 2017-12-14 Last modifier: Seekings, James Last modified: 2017-12-14 Address: Animal and Plant Health Agency (APHA) Virology Department Woodham Lane New Haw, Addlestone, Surrey KT15 3NB United Kingdom
niman Posted December 31, 2017 Author Report Posted December 31, 2017 Descriptions Align Segment-ID Name Score E-Value Identity EPI1122893 A/chicken/Greece/39_2017b/2017 (A/H5N6) segment 4 (HA) 3147.8 0.000000e+00 1704/1704 (100%) EPI1122877 A/chicken/Greece/39_2017/2017 (A/H5N6) segment 4 (HA) 3147.8 0.000000e+00 1704/1704 (100%) EPI1122885 A/chicken/Greece/39_2017a/2017 (A/H5N6) segment 4 (HA) 3144.1 0.000000e+00 1703/1704 (99%) EPI1019718 A/M_Swan/NL-Roggebotsluis/16014462-019/2016 (A/H5N8) segment 4 (HA) 3103.5 0.000000e+00 1696/1704 (99%) EPI863865 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 4 (HA) 3103.5 0.000000e+00 1696/1704 (99%) EPI859650 A/wild duck/Germany-BW/R8455/2016 (A/H5N8) segment 4 (HA) 3103.5 0.000000e+00 1696/1704 (99%) EPI969254 A/Tufted Duck/Switzerland/V237/2016 (A/H5N8) segment 4 (HA) 3098.0 0.000000e+00 1695/1704 (99%) EPI869940 A/herring gull/Poland/84/2016 (A/H5N8) segment 4 (HA) 3098.0 0.000000e+00 1695/1704 (99%) EPI861011 A/turkey/Germany-SH/R8595/2016 (A/H5N8) segment 4 (HA) 3098.0 0.000000e+00 1695/1704 (99%) EPI860401 A/tufted_duck/Germany/AR8459-L01988/2016 (A/H5N8) segment 4 (HA) 3098.0 0.000000e+00 1695/1704 (99%) EPI859653 A/tufted_duck/Germany/AR8444-L01986/2016 (A/H5N8) segment 4 (HA) 3098.0 0.000000e+00 1695/1704 (99%) EPI859212 A/tufted_duck/Germany-SH/R8446/2016 (A/H5N8) segment 4 (HA) 3098.0 0.000000e+00 1695/1704 (99%) EPI1019878 A/Teal/NL-Ferwert/16015273-013/2016 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI1019870 A/T_Dk/NL-Zuidoost Beemster/16014148-009/2016 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI1019862 A/T_Dk/NL-Zuidoost Beemster/16014148-002/2016 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI1019854 A/T_Dk/NL-Zeewolde/16013976-006/2016 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI1019790 A/T_Dk/NL-Rotterdam/16014155-001/2016 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI1019782 A/T_Dk/NL-Roggebotsluis/16014462-015/2016 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI1019774 A/T_Dk/NL-Monnickendam/16013865-006-008/2016 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI1019758 A/Sea_eagle/NL-Assen/16015398-002/2016 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI1019750 A/P_falcon/NL-Vrouwenpolder (Zeeland)/16015510-001/2016 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI1019726 A/Magpie/NL-Volendam/16014331-002/2016 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI1019710 A/L-bl-ba-gull/NL-Sovon/16014324-014/2016 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI1019702 A/Gull10/NL-Marker Wadden/16014466-014/2016 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI1019670 A/Gr_bk_bd_gull/NL-Slootdorp/16014102-005/2016 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI1019630 A/Eur_Wig/NL-Wormer/16016143-002/2016 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI1019614 A/Eur_Wig/NL-Walterswald/16015923-003/2016 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI1019542 A/Eur_Wig/NL-Ferwert/16015273-002/2016 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI1019446 A/Crow/NL-Oostwoud/16015372-004/2016 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI1019382 A/Buzzard/NL-Durgerdam/16015100-004/2016 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI954783 A/Common_tern/Hungary/8187/2017 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI861224 A/chicken/Germany-SH/R8758/2016 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI860393 A/tufted_duck/Germany/AR8444-L01987/2016 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI909364 A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 4 (HA) 3088.7 0.000000e+00 1693/1704 (99%) EPI1021130 A/mute swan/Czech Republic/1848-17_2/2017 (H5N8) (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI1021129 A/mute swan/Czech Republic/1848-17_1/2017 (H5N8) (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI1019830 A/T_Dk/NL-Zeewolde/16013976-004/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI1019822 A/T_Dk/NL-Zeewolde/16013976-001-003/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI1019814 A/T_Dk/NL-Zeewolde/16013976-001/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI1019766 A/T_Dk/NL-Almeerder Zand/16014341-003/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI1019742 A/Mal/NL-Mastenbroek/16015378-002/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI1019686 A/Gull/NL-Marker Wadden/16014466-020/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI1019566 A/Eur_Wig/NL-Groningen/16015376-003/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI1019534 A/Eur_Wig/NL-Enumatil-Groningen/16015704-001/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI1019502 A/Eur_Wig/NL-Akkrum/16015817-003/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI1019486 A/Dk/NL-Rotterdam/16014008-001-005/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI1019470 A/Dk/NL-Biddinghuizen/16015145-021-025/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI1019462 A/Dk/NL-Biddinghuizen/16015083-016-020/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI1019454 A/Dk/NL-Biddinghuizen/16014829-011-015/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI1019422 A/Ch/NL-Hiaure/16016112-001-005/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI1019414 A/Ch/NL-Den Oever/16014231-001/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI1019374 A/Bl_H_gull/NL-Slootdorp/16014102-002/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI1019366 A/Bk_swan/NL-Den Oever/16013973-002/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI963516 A/domestic duck/Germany-MV/R9764/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI876474 A/turkey/Germany-NI/R10523/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI861012 A/chicken/Germany-MV/R8790/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI860509 A/tufted duck/Germany-SH/R8444/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI932938 A/chicken/Germany-MV/R10048/2016 (A/H5N8) segment 4 (HA) 3085.0 0.000000e+00 1692/1704 (99%) EPI860231 A/wild duck/Poland/82A/2016 (A/H5N8) segment 4 (HA) 3083.2 0.000000e+00 1692/1704 (99%) EPI1117253 A/T_Dk/NL-Werkendam/16014159-001/2016 (A/H5N5) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI1019846 A/T_Dk/NL-Zeewolde/16013976-005/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI1019838 A/T_Dk/NL-Zeewolde/16013976-004-006/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI1019662 A/Go/NL-Roggebotsluis/16014462-010/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI1019654 A/G_c_grebe/NL-Monnickendam/16013865-009-010/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI1019606 A/Eur_Wig/NL-Vianen/16015917-006/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI1019598 A/Eur_Wig/NL-Terschelling/16015692-010/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI1019574 A/Eur_Wig/NL-Leeuwarden/16015699-002/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI1019390 A/C_Gull/NL-Slootdorp/16014102-003/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI1007675 A/peacock/Belgium/1017/2017 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI954607 A/turkey/Italy/17VIR1452-22/2017 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI954575 A/turkey/Italy/17VIR576-11/2017 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI881292 A/domestic duck/Germany-MV/R9869/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI861222 A/tufted duck/Germany-SN/R8795/2016 (A/H5N8) segment 4 (HA) 3079.5 0.000000e+00 1690/1704 (99%) EPI869687 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 4 (HA) 3077.6 0.000000e+00 1691/1704 (99%) EPI1045611 A/chicken/Rostov/44/2017 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI1044550 A/mute swan/Kaliningrad/132/2017 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI1019806 A/T_Dk/NL-Werkendam/16014159-003/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI1019798 A/T_Dk/NL-Werkendam/16014159-002/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI1019694 A/Gull1/NL-Marker Wadden/16014466-011/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI1019638 A/Eur_Wig/NL-Zoeterwoude/16015702-010/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI1019582 A/Eur_Wig/NL-Leidschendam/16015697-007/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI1019550 A/Eur_Wig/NL-Gouda/16015824-001/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI1019526 A/Eur_Wig/NL-Drieborg (Dollard)/16015513-001/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI1019518 A/Eur_Wig/NL-De Waal (Texel)/16014891-004/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI1019510 A/Eur_Wig/NL-De Waal (Texel)/16014891-003/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI967465 A/turkey/Germany-NI/R9807/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI943320 A/pochard_duck/England/SA12_157809/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI942420 A/chicken/Czech Republic/2764-17_2/2017 (H5N8) (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI942419 A/chicken/Czech Republic/2764-17_1/2017 (H5N8) (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI909444 A/mute swan/Krasnodar/25/2017 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI909404 A/chicken/Voronezh/18/2017 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI909396 A/long-eared owl/Voronezh/16/2017 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI909388 A/Ural owl/Voronezh/14/2017 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI909380 A/long-eared owl/Voronezh/15/2017 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI863857 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI863849 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI863834 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI863826 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI1019734 A/Mal/NL-IJsselmuiden/16015448-002/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI1019678 A/Grey_Go/NL-Groot-Ammers/16015901-012/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%)
niman Posted December 31, 2017 Author Report Posted December 31, 2017 Descriptions Align Segment-ID Name Score E-Value Identity EPI1122895 A/chicken/Greece/39_2017b/2017 (A/H5N6) segment 6 (NA) 2603.0 0.000000e+00 1409/1409 (100%) EPI1122887 A/chicken/Greece/39_2017a/2017 (A/H5N6) segment 6 (NA) 2599.4 0.000000e+00 1408/1409 (99%) EPI1122879 A/chicken/Greece/39_2017/2017 (A/H5N6) segment 6 (NA) 2599.4 0.000000e+00 1408/1409 (99%) EPI1119073 A/spoonbill/Taiwan/DB645/2017 (A/H5N6) segment 6 (NA) 2492.3 0.000000e+00 1387/1406 (98%) EPI1127540 A/mute swan/Shimane/3211A001/2017 (A/H5N6) segment 6 (NA) 2486.7 0.000000e+00 1388/1409 (98%) EPI1011098 A/barnacle goose/Netherlands/2/2014 (A/H3N6) segment 6 (NA) 2442.4 0.000000e+00 1381/1410 (97%) EPI1131090 A/Great Black-backed Gull/Netherlands/1/2017 (A/H5N6) segment 6 (NA) 2435.0 0.000000e+00 1374/1402 (98%) EPI1131098 A/Great Black-backed Gull/Netherlands/2/2017 (A/H5N6) segment 6 (NA) 2422.1 0.000000e+00 1365/1392 (98%) EPI1036189 A/duck/Moscow/4652/2011 (A/H4N6) segment 6 (NA) 2361.1 0.000000e+00 1366/1410 (96%) EPI1036196 A/duck/Moscow/4781/2012 (A/H4N6) segment 6 (NA) 2348.2 0.000000e+00 1364/1410 (96%) EPI890326 A/mallard duck/Netherlands/19/2012 (A/H4N6) segment 6 (NA) 2331.6 0.000000e+00 1361/1410 (96%) EPI1129918 A/Great Black-backed Gull/Netherlands/2/2017 (A/H5N6) segment 6 (NA) 2329.7 0.000000e+00 1313/1339 (98%) EPI1129917 A/Great Black-backed Gull/Netherlands/1/2017 (A/H5N6) segment 6 (NA) 2292.8 0.000000e+00 1295/1322 (97%) EPI823917 A/teal/Chany Lake/106_ cloaca/2012 (A/H4N6) segment 6 (NA) 2276.2 0.000000e+00 1352/1411 (95%) EPI823909 A/teal/Chany Lake/104_ feather/2012 (A/H4N6) segment 6 (NA) 2276.2 0.000000e+00 1352/1411 (95%) EPI823901 A/teal/Chany Lake/104_cloaca/2012 (A/H4N6) segment 6 (NA) 2276.2 0.000000e+00 1352/1411 (95%) EPI823790 A/shoveller/Chany Lake/101/2012 (A/H4N6) segment 6 (NA) 2276.2 0.000000e+00 1352/1411 (95%) EPI470232 A/duck/Yunnan/87/2007 (A/H7N6) segment 6 (NA) 2276.2 0.000000e+00 1352/1411 (95%) EPI891032 A/mallard duck/Netherlands/30/2014 (A/H4N6) segment 6 (NA) 2270.7 0.000000e+00 1350/1410 (95%) EPI692466 A/duck/Henan/S1091/2010 (A/H4N6) segment 6 (NA) 2270.7 0.000000e+00 1351/1411 (95%) EPI533781 A/Caspian seal/Russia/T1/2012 (A/H4N6) segment 6 (NA) 2270.7 0.000000e+00 1351/1411 (95%) EPI533775 A/Caspian seal/Russia/1884/2002 (A/H4N6) segment 6 (NA) 2270.7 0.000000e+00 1351/1411 (95%) EPI485322 A/eurasian wigeon/Mongolia/340V/2009 (A/H4N6) segment 6 (NA) 2259.6 0.000000e+00 1349/1411 (95%) EPI692506 A/duck/Hunan/S1012/2009 (A/H4N6) segment 6 (NA) 2254.0 0.000000e+00 1348/1411 (95%) EPI414148 A/duck/Jiangsu/4/2010 (A/H3N6) segment 6 (NA) 2254.0 0.000000e+00 1348/1411 (95%) EPI407862 A/Khaki Campbell duck/Karachi/NARC-23963/2010 (A/H4N6) segment 6 (NA) 2250.3 0.000000e+00 1347/1411 (95%) EPI1014700 A/mallard duck/Netherlands/7/2006 (A/H10N6) segment 6 (NA) 2248.5 0.000000e+00 1347/1411 (95%) EPI692346 A/chicken/Hunan/S1267/2010 (A/H4N6) segment 6 (NA) 2248.5 0.000000e+00 1348/1412 (95%) EPI692338 A/chicken/Hunan/S1248/2010 (A/H4N6) segment 6 (NA) 2248.5 0.000000e+00 1348/1412 (95%) EPI395392 A/chicken/India/WB-NIV101006/2009 (A/H4N6) segment 6 (NA) 2248.5 0.000000e+00 1347/1411 (95%) EPI1013418 A/mallard duck/Netherlands/8/2006 (A/H10N6) segment 6 (NA) 2243.0 0.000000e+00 1346/1411 (95%) EPI296530 A/mallard/Netherlands/4/2006 (A/H10N6) segment 6 (NA) 2243.0 0.000000e+00 1346/1411 (95%) EPI372354 A/teal/Egypt/09888-NAMRU3/2005 (A/H4N6) segment 6 (NA) 2239.3 0.000000e+00 1346/1411 (95%) EPI890683 A/mallard duck/Netherlands/6/2006 (A/H4N6) segment 6 (NA) 2237.4 0.000000e+00 1345/1411 (95%) EPI401303 A/duck/Korea/DY104/2007 (A/H4N6) segment 6 (NA) 2237.4 0.000000e+00 1345/1411 (95%) EPI243479 A/duck/Vietnam/OIE-2454/2009 (A/H4N6) segment 6 (NA) 2237.4 0.000000e+00 1345/1411 (95%) EPI168523 A/common pochard/Aktau/1455/2006 (A/H4N6) segment 6 (NA) 2231.9 0.000000e+00 1344/1411 (95%) EPI168522 A/coot/Aktau/1454/2006 (A/H4N6) segment 6 (NA) 2226.3 0.000000e+00 1343/1411 (95%) EPI513237 A/mallard/Sweden/104925/2009 (A/H4N6) segment 6 (NA) 2220.8 0.000000e+00 1342/1411 (95%) EPI540366 A/duck/Bangladesh/1521/2009 (A/H4N6) segment 6 (NA) 2215.3 0.000000e+00 1341/1411 (95%) EPI513749 A/mallard/Sweden/79978/2008 (A/H4N6) segment 6 (NA) 2209.7 0.000000e+00 1340/1411 (94%) EPI284397 A/mallard/Czech Republic/12652/2007 (A/H4N6) segment 6 (NA) 2209.7 0.000000e+00 1337/1407 (95%) EPI395393 A/chicken/India/WB-NIV101018/2009 (A/H4N6) segment 6 (NA) 2204.2 0.000000e+00 1340/1412 (94%) EPI1013677 A/mallard duck/Netherlands/10/2013 (A/H4N6) segment 6 (NA) 2198.6 0.000000e+00 1338/1411 (94%) EPI540374 A/duck/Bangladesh/1283/2008 (A/H4N6) segment 6 (NA) 2198.6 0.000000e+00 1339/1412 (94%) EPI513568 A/mallard/Sweden/80348/2008 (A/H0) segment 6 (NA) 2198.6 0.000000e+00 1338/1411 (94%) EPI485357 A/ruddy shelduck/Mongolia/592/2010 (A/H8N6) segment 6 (NA) 2198.6 0.000000e+00 1338/1411 (94%) EPI704432 A/duck/Mongolia/769/2015 (A/H4N6) segment 6 (NA) 2193.1 0.000000e+00 1338/1412 (94%) EPI889824 A/mallard duck/Netherlands/27/2009 (A/H4N6) segment 6 (NA) 2187.6 0.000000e+00 1337/1412 (94%) EPI540358 A/duck/Bangladesh/1766/2010 (A/H4N6) segment 6 (NA) 2187.6 0.000000e+00 1336/1411 (94%) EPI704293 A/duck/Mongolia/127/2015 (A/H4N6) segment 6 (NA) 2182.0 0.000000e+00 1336/1412 (94%) EPI704269 A/duck/Mongolia/101/2015 (A/H4N6) segment 6 (NA) 2182.0 0.000000e+00 1336/1412 (94%) EPI618783 A/mallard/Sweden/93475/2009 (A/H10N6) segment 6 (NA) 2182.0 0.000000e+00 1337/1413 (94%) EPI513546 A/mallard/Sweden/101010/2009 (A/H4N6) segment 6 (NA) 2182.0 0.000000e+00 1336/1412 (94%) EPI513461 A/mallard/Sweden/101632/2009 (A/H4N6) segment 6 (NA) 2182.0 0.000000e+00 1336/1412 (94%) EPI513454 A/mallard/Sweden/101603/2009 (A/H4N6) segment 6 (NA) 2182.0 0.000000e+00 1336/1412 (94%) EPI513433 A/mallard/Sweden/101564/2009 (A/H4N6) segment 6 (NA) 2182.0 0.000000e+00 1336/1412 (94%) EPI513431 A/mallard/Sweden/101785/2009 (A/H4N6) segment 6 (NA) 2182.0 0.000000e+00 1336/1412 (94%) EPI513415 A/mallard/Sweden/101733/2009 (A/H4N6) segment 6 (NA) 2182.0 0.000000e+00 1336/1412 (94%) EPI513408 A/mallard/Sweden/101663/2009 (A/H4N6) segment 6 (NA) 2182.0 0.000000e+00 1336/1412 (94%) EPI513394 A/mallard/Sweden/101654/2009 (A/H4N6) segment 6 (NA) 2182.0 0.000000e+00 1336/1412 (94%) EPI513358 A/mallard/Sweden/101831/2009 (A/H4N6) segment 6 (NA) 2182.0 0.000000e+00 1336/1412 (94%) EPI513341 A/mallard/Sweden/104681/2009 (A/H4N6) segment 6 (NA) 2182.0 0.000000e+00 1336/1412 (94%) EPI513230 A/mallard/Sweden/104839/2009 (A/H4N6) segment 6 (NA) 2182.0 0.000000e+00 1336/1412 (94%) EPI513163 A/mallard/Sweden/105011/2009 (A/H4N6) segment 6 (NA) 2182.0 0.000000e+00 1336/1412 (94%) EPI470233 A/wild waterfowl/Hong Kong/MPM3375/2011 (A/H7N6) segment 6 (NA) 2182.0 0.000000e+00 1335/1411 (94%) EPI461617 A/duck/Hunan/S11893/2012 (A/H4N6) segment 6 (NA) 2182.0 0.000000e+00 1335/1411 (94%) EPI1011235 A/mallard duck/Netherlands/22/2011 (A/H4N6) segment 6 (NA) 2176.5 0.000000e+00 1334/1411 (94%) EPI692554 A/duck/Jiangxi/S2443/2012 (A/H4N6) segment 6 (NA) 2176.5 0.000000e+00 1334/1411 (94%) EPI574259 A/mule duck/Bulgaria/105/2008 (A/H0) segment 6 (NA) 2176.5 0.000000e+00 1334/1411 (94%) EPI574223 A/mule duck/Bulgaria/127/2008 (A/H0) segment 6 (NA) 2176.5 0.000000e+00 1334/1411 (94%) EPI540382 A/duck/Bangladesh/1784/2010 (A/H4N6) segment 6 (NA) 2176.5 0.000000e+00 1334/1411 (94%) EPI540350 A/duck/Bangladesh/1783/2010 (A/H4N6) segment 6 (NA) 2176.5 0.000000e+00 1334/1411 (94%) EPI514901 A/mallard/Sweden/105093/2009 (A/H4N6) segment 6 (NA) 2176.5 0.000000e+00 1335/1412 (94%) EPI513514 A/mallard/Sweden/101524/2009 (A/H4N6) segment 6 (NA) 2176.5 0.000000e+00 1335/1412 (94%) EPI513507 A/mallard/Sweden/101504/2009 (A/H4N6) segment 6 (NA) 2176.5 0.000000e+00 1335/1412 (94%) EPI513493 A/mallard/Sweden/101329/2009 (A/H4N6) segment 6 (NA) 2176.5 0.000000e+00 1335/1412 (94%) EPI513475 A/mallard/Sweden/101642/2009 (A/H4N6) segment 6 (NA) 2176.5 0.000000e+00 1335/1412 (94%) EPI513468 A/mallard/Sweden/101640/2009 (A/H4N6) segment 6 (NA) 2176.5 0.000000e+00 1335/1412 (94%) EPI513424 A/mallard/Sweden/101782/2009 (A/H0) segment 6 (NA) 2176.5 0.000000e+00 1335/1412 (94%) EPI513386 A/mallard/Sweden/102029/2009 (A/H4N6) segment 6 (NA) 2176.5 0.000000e+00 1335/1412 (94%) EPI513379 A/mallard/Sweden/102024/2009 (A/H4N6) segment 6 (NA) 2176.5 0.000000e+00 1335/1412 (94%) EPI513334 A/mallard/Sweden/102157/2009 (A/H4N6) segment 6 (NA) 2176.5 0.000000e+00 1335/1412 (94%) EPI513327 A/mallard/Sweden/102124/2009 (A/H4N6) segment 6 (NA) 2176.5 0.000000e+00 1336/1413 (94%) EPI513320 A/mallard/Sweden/102114/2009 (A/H4N6) segment 6 (NA) 2176.5 0.000000e+00 1335/1412 (94%) EPI513306 A/mallard/Sweden/102045/2009 (A/H4N6) segment 6 (NA) 2176.5 0.000000e+00 1335/1412 (94%) EPI513244 A/mallard/Sweden/104931/2009 (A/H4N6) segment 6 (NA) 2176.5 0.000000e+00 1335/1412 (94%) EPI513216 A/mallard/Sweden/104793/2009 (A/H4N6) segment 6 (NA) 2176.5 0.000000e+00 1336/1413 (94%) EPI513209 A/mallard/Sweden/104690/2009 (A/H4N6) segment 6 (NA) 2176.5 0.000000e+00 1336/1413 (94%) EPI513205 A/mallard/Sweden/102250/2009 (A/H4N6) segment 6 (NA) 2176.5 0.000000e+00 1336/1413 (94%) EPI513184 A/mallard/Sweden/105516/2009 (A/H4N6) segment 6 (NA) 2176.5 0.000000e+00 1335/1412 (94%) EPI513177 A/mallard/Sweden/105137/2009 (A/H4N6) segment 6 (NA) 2176.5 0.000000e+00 1335/1412 (94%) EPI513170 A/mallard/Sweden/105012/2009 (A/H4N6) segment 6 (NA) 2176.5 0.000000e+00 1335/1412 (94%) EPI357825 A/duck/Mongolia/OIE-7438/2011 (A/H4N6) segment 6 (NA) 2176.5 0.000000e+00 1334/1411 (94%) EPI965451 A/duck/Bangladesh/26974/2015 (A/H3N6) segment 6 (NA) 2170.9 0.000000e+00 1335/1413 (94%) EPI513447 A/mallard/Sweden/101602/2009 (A/H4N6) segment 6 (NA) 2170.9 0.000000e+00 1334/1412 (94%) EPI513313 A/mallard/Sweden/102056/2009 (A/H4N6) segment 6 (NA) 2170.9 0.000000e+00 1334/1412 (94%) EPI513198 A/mallard/Sweden/124418/2010 (A/H4N6) segment 6 (NA) 2170.9 0.000000e+00 1333/1411 (94%) EPI222097 A/garganey/Altai/1216/2007 (A/H3N6) segment 6 (NA) 2167.2 0.000000e+00 1333/1412 (94%) EPI965498 A/duck/Bangladesh/26920/2015 (A/H3N6) segment 6 (NA) 2165.4 0.000000e+00 1334/1413 (94%)
niman Posted December 31, 2017 Author Report Posted December 31, 2017 Descriptions Align Segment-ID Name Score E-Value Identity EPI1122896 A/chicken/Greece/39_2017b/2017 (A/H5N6) segment 7 (MP) 1794.2 0.000000e+00 971/971 (100%) EPI1122888 A/chicken/Greece/39_2017a/2017 (A/H5N6) segment 7 (MP) 1794.2 0.000000e+00 971/971 (100%) EPI1122880 A/chicken/Greece/39_2017/2017 (A/H5N6) segment 7 (MP) 1794.2 0.000000e+00 971/971 (100%) EPI1019753 A/Sea_eagle/NL-Assen/16015398-002/2016 (A/H5N8) segment 7 (MP) 1783.1 0.000000e+00 969/971 (99%) EPI1117256 A/T_Dk/NL-Werkendam/16014159-001/2016 (A/H5N5) segment 7 (MP) 1777.6 0.000000e+00 968/971 (99%) EPI1019841 A/T_Dk/NL-Zeewolde/16013976-005/2016 (A/H5N8) segment 7 (MP) 1777.6 0.000000e+00 968/971 (99%) EPI1019833 A/T_Dk/NL-Zeewolde/16013976-004-006/2016 (A/H5N8) segment 7 (MP) 1777.6 0.000000e+00 968/971 (99%) EPI1019801 A/T_Dk/NL-Werkendam/16014159-003/2016 (A/H5N8) segment 7 (MP) 1777.6 0.000000e+00 968/971 (99%) EPI1019793 A/T_Dk/NL-Werkendam/16014159-002/2016 (A/H5N8) segment 7 (MP) 1777.6 0.000000e+00 968/971 (99%) EPI1019785 A/T_Dk/NL-Rotterdam/16014155-001/2016 (A/H5N8) segment 7 (MP) 1777.6 0.000000e+00 968/971 (99%) EPI1019777 A/T_Dk/NL-Roggebotsluis/16014462-015/2016 (A/H5N8) segment 7 (MP) 1777.6 0.000000e+00 968/971 (99%) EPI1019769 A/T_Dk/NL-Monnickendam/16013865-006-008/2016 (A/H5N8) segment 7 (MP) 1777.6 0.000000e+00 968/971 (99%) EPI1019745 A/P_falcon/NL-Vrouwenpolder (Zeeland)/16015510-001/2016 (A/H5N8) segment 7 (MP) 1777.6 0.000000e+00 968/971 (99%) EPI1019721 A/Magpie/NL-Volendam/16014331-002/2016 (A/H5N8) segment 7 (MP) 1777.6 0.000000e+00 968/971 (99%) EPI1019705 A/L-bl-ba-gull/NL-Sovon/16014324-014/2016 (A/H5N8) segment 7 (MP) 1777.6 0.000000e+00 968/971 (99%) EPI1019657 A/Go/NL-Roggebotsluis/16014462-010/2016 (A/H5N8) segment 7 (MP) 1777.6 0.000000e+00 968/971 (99%) EPI1019561 A/Eur_Wig/NL-Groningen/16015376-003/2016 (A/H5N8) segment 7 (MP) 1777.6 0.000000e+00 968/971 (99%) EPI1019481 A/Dk/NL-Rotterdam/16014008-001-005/2016 (A/H5N8) segment 7 (MP) 1777.6 0.000000e+00 968/971 (99%) EPI1019457 A/Dk/NL-Biddinghuizen/16015083-016-020/2016 (A/H5N8) segment 7 (MP) 1777.6 0.000000e+00 968/971 (99%) EPI1019449 A/Dk/NL-Biddinghuizen/16014829-011-015/2016 (A/H5N8) segment 7 (MP) 1777.6 0.000000e+00 968/971 (99%) EPI1019441 A/Crow/NL-Oostwoud/16015372-004/2016 (A/H5N8) segment 7 (MP) 1777.6 0.000000e+00 968/971 (99%) EPI1019409 A/Ch/NL-Den Oever/16014231-001/2016 (A/H5N8) segment 7 (MP) 1777.6 0.000000e+00 968/971 (99%) EPI1019385 A/C_Gull/NL-Slootdorp/16014102-003/2016 (A/H5N8) segment 7 (MP) 1777.6 0.000000e+00 968/971 (99%) EPI1019369 A/Bl_H_gull/NL-Slootdorp/16014102-002/2016 (A/H5N8) segment 7 (MP) 1777.6 0.000000e+00 968/971 (99%) EPI1019361 A/Bk_swan/NL-Den Oever/16013973-002/2016 (A/H5N8) segment 7 (MP) 1777.6 0.000000e+00 968/971 (99%) EPI990781 A/mute swan/Germany-NI/AR1529-L02145/2017 (A/H5N8) segment 7 (MP) 1777.6 0.000000e+00 968/971 (99%) EPI967142 A/turkey/Germany-NI/R9807/2016 (A/H5N8) segment 7 (MP) 1777.6 0.000000e+00 968/971 (99%) EPI963517 A/domestic duck/Germany-MV/R9764/2016 (A/H5N8) segment 7 (MP) 1777.6 0.000000e+00 968/971 (99%) EPI881282 A/chicken/Germany-MV/R8790/2016 (A/H5N8) segment 7 (MP) 1777.6 0.000000e+00 968/971 (99%) EPI881277 A/chicken/Germany-SH/R8758/2016 (A/H5N8) segment 7 (MP) 1777.6 0.000000e+00 968/971 (99%) EPI860404 A/tufted_duck/Germany/AR8459-L01988/2016 (A/H5N8) segment 7 (MP) 1777.6 0.000000e+00 968/971 (99%) EPI860237 A/wild duck/Poland/82A/2016 (A/H5N8) segment 7 (MP) 1777.6 0.000000e+00 968/971 (99%) EPI859654 A/tufted_duck/Germany/AR8444-L01986/2016 (A/H5N8) segment 7 (MP) 1777.6 0.000000e+00 968/971 (99%) EPI1085345 A/goose/Czech Republic/136-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI1032553 A/Mulard_duck/Hungary/59163/2016 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI1032527 A/Mulard_duck/Hungary/62902/2016 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI1032519 A/Mulard_duck/Hungary/60369/2016 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI1032511 A/Goose/Hungary/59763/2016 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI1032503 A/Goose/Hungary/17985/2017 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI1032495 A/Goose/Hungary/17580/2017 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI1032487 A/Goose/Hungary/17051/2017 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI1032479 A/Goose/Hungary/15729/2017 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI1019873 A/Teal/NL-Ferwert/16015273-013/2016 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI1019849 A/T_Dk/NL-Zeewolde/16013976-006/2016 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI1019825 A/T_Dk/NL-Zeewolde/16013976-004/2016 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI1019817 A/T_Dk/NL-Zeewolde/16013976-001-003/2016 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI1019809 A/T_Dk/NL-Zeewolde/16013976-001/2016 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI1019761 A/T_Dk/NL-Almeerder Zand/16014341-003/2016 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI1019697 A/Gull10/NL-Marker Wadden/16014466-014/2016 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI1019689 A/Gull1/NL-Marker Wadden/16014466-011/2016 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI1019681 A/Gull/NL-Marker Wadden/16014466-020/2016 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI1019665 A/Gr_bk_bd_gull/NL-Slootdorp/16014102-005/2016 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI1019649 A/G_c_grebe/NL-Monnickendam/16013865-009-010/2016 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI1019593 A/Eur_Wig/NL-Terschelling/16015692-010/2016 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI1019569 A/Eur_Wig/NL-Leeuwarden/16015699-002/2016 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI1019537 A/Eur_Wig/NL-Ferwert/16015273-002/2016 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI1019529 A/Eur_Wig/NL-Enumatil-Groningen/16015704-001/2016 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI1019465 A/Dk/NL-Biddinghuizen/16015145-021-025/2016 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI1019417 A/Ch/NL-Hiaure/16016112-001-005/2016 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI1019377 A/Buzzard/NL-Durgerdam/16015100-004/2016 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI975869 A/tawny owl/Germany-SN/R1186/2017 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI969267 A/chicken/Czech Republic/2644-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI969257 A/Tufted Duck/Switzerland/V237/2016 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI962050 A/Duck/Hungary/55764/2016 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI962039 A/Duck/Hungary/54738/2016 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI961503 A/turkey/Italy/17VIR1574-1/2017 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI961452 A/gadwall/Kurgan/2442/2016 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI959534 A/Mute swan/Hungary/6276/2017 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI959427 A/chicken/Poland/79A/2016 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI956123 A/Goose/Hungary/59712/2016 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI954832 A/Mute swan/Hungary/3137/2017 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI954778 A/Common_tern/Hungary/8187/2017 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI954730 A/Mute swan/Hungary/3513/2017 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI954722 A/Mute swan/Hungary/3139/2017 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI954714 A/Mute swan/Hungary/2825/2017 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI954682 A/Mute swan/Hungary/1955/2017 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI954650 A/Duck/Hungary/984/2017 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI954634 A/Harris Hawk/Hungary/120/2017 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI954594 A/turkey/Italy/17VIR1338-3/2017 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI953518 A/mallard/Hungary/57857/2016 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI931199 A/chicken/Czech Republic/1896-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI931112 A/mute swan/Czech Republic/879-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI930844 A/chicken/Czech Republic/55-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI930839 A/mute swan/Czech Republic/54-17_2/2017 (H5N8) (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI922507 A/chicken/Germany-MV/R10048/2016 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI916716 A/turkey/Germany-SH/R8595/2016 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI909463 A/chicken/Kalmykia/2643/2016 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI909455 A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI909367 A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI869946 A/herring gull/Poland/84/2016 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI866980 A/duck/Hungary/60441/2016 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI863860 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 968/972 (99%) EPI860521 A/goose/Hungary/55128/2016 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI860516 A/Mulard_duck/Hungary/54494/2016 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI860498 A/tufted duck/Germany-SH/R8444/2016 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI860396 A/tufted_duck/Germany/AR8444-L01987/2016 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI859202 A/mute_swan/Hungary/51049/2016 (A/H5N8) segment 7 (MP) 1772.1 0.000000e+00 967/971 (99%) EPI1126346 A/mallard/Czech Republic/136-17_2/2017 (H5N8) (A/H5N8) segment 7 (MP) 1768.4 0.000000e+00 966/971 (99%) EPI1116593 A/mute swan/Czech Republic/54-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1768.4 0.000000e+00 966/971 (99%) EPI1087641 A/chicken/Czech Republic/988-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1768.4 0.000000e+00 966/971 (99%)
niman Posted December 31, 2017 Author Report Posted December 31, 2017 Descriptions Align Segment-ID Name Score E-Value Identity EPI1122890 A/chicken/Greece/39_2017b/2017 (A/H5N6) segment 1 (PB2) 4211.5 0.000000e+00 2280/2280 (100%) EPI1122874 A/chicken/Greece/39_2017/2017 (A/H5N6) segment 1 (PB2) 4204.1 0.000000e+00 2278/2280 (99%) EPI1122882 A/chicken/Greece/39_2017a/2017 (A/H5N6) segment 1 (PB2) 4200.4 0.000000e+00 2277/2280 (99%) EPI1019843 A/T_Dk/NL-Zeewolde/16013976-005/2016 (A/H5N8) segment 1 (PB2) 4189.3 0.000000e+00 2276/2280 (99%) EPI1019835 A/T_Dk/NL-Zeewolde/16013976-004-006/2016 (A/H5N8) segment 1 (PB2) 4189.3 0.000000e+00 2276/2280 (99%) EPI1019779 A/T_Dk/NL-Roggebotsluis/16014462-015/2016 (A/H5N8) segment 1 (PB2) 4189.3 0.000000e+00 2276/2280 (99%) EPI1019771 A/T_Dk/NL-Monnickendam/16013865-006-008/2016 (A/H5N8) segment 1 (PB2) 4189.3 0.000000e+00 2276/2280 (99%) EPI1019747 A/P_falcon/NL-Vrouwenpolder (Zeeland)/16015510-001/2016 (A/H5N8) segment 1 (PB2) 4189.3 0.000000e+00 2276/2280 (99%) EPI1019739 A/Mal/NL-Mastenbroek/16015378-002/2016 (A/H5N8) segment 1 (PB2) 4189.3 0.000000e+00 2276/2280 (99%) EPI1019723 A/Magpie/NL-Volendam/16014331-002/2016 (A/H5N8) segment 1 (PB2) 4189.3 0.000000e+00 2276/2280 (99%) EPI1019707 A/L-bl-ba-gull/NL-Sovon/16014324-014/2016 (A/H5N8) segment 1 (PB2) 4189.3 0.000000e+00 2276/2280 (99%) EPI1019699 A/Gull10/NL-Marker Wadden/16014466-014/2016 (A/H5N8) segment 1 (PB2) 4189.3 0.000000e+00 2276/2280 (99%) EPI1019683 A/Gull/NL-Marker Wadden/16014466-020/2016 (A/H5N8) segment 1 (PB2) 4189.3 0.000000e+00 2276/2280 (99%) EPI1019667 A/Gr_bk_bd_gull/NL-Slootdorp/16014102-005/2016 (A/H5N8) segment 1 (PB2) 4189.3 0.000000e+00 2276/2280 (99%) EPI1019467 A/Dk/NL-Biddinghuizen/16015145-021-025/2016 (A/H5N8) segment 1 (PB2) 4189.3 0.000000e+00 2276/2280 (99%) EPI1019459 A/Dk/NL-Biddinghuizen/16015083-016-020/2016 (A/H5N8) segment 1 (PB2) 4189.3 0.000000e+00 2276/2280 (99%) EPI1019451 A/Dk/NL-Biddinghuizen/16014829-011-015/2016 (A/H5N8) segment 1 (PB2) 4189.3 0.000000e+00 2276/2280 (99%) EPI1019411 A/Ch/NL-Den Oever/16014231-001/2016 (A/H5N8) segment 1 (PB2) 4189.3 0.000000e+00 2276/2280 (99%) EPI1019387 A/C_Gull/NL-Slootdorp/16014102-003/2016 (A/H5N8) segment 1 (PB2) 4189.3 0.000000e+00 2276/2280 (99%) EPI1019379 A/Buzzard/NL-Durgerdam/16015100-004/2016 (A/H5N8) segment 1 (PB2) 4189.3 0.000000e+00 2276/2280 (99%) EPI1019363 A/Bk_swan/NL-Den Oever/16013973-002/2016 (A/H5N8) segment 1 (PB2) 4189.3 0.000000e+00 2276/2280 (99%) EPI881279 A/chicken/Germany-SH/R8758/2016 (A/H5N8) segment 1 (PB2) 4189.3 0.000000e+00 2276/2280 (99%) EPI863846 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 1 (PB2) 4189.3 0.000000e+00 2276/2280 (99%) EPI863831 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 1 (PB2) 4189.3 0.000000e+00 2276/2280 (99%) EPI863823 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 1 (PB2) 4189.3 0.000000e+00 2276/2280 (99%) EPI860233 A/wild duck/Poland/82A/2016 (A/H5N8) segment 1 (PB2) 4189.3 0.000000e+00 2276/2280 (99%) EPI988591 A/turkey/Germany-NI/R9807/2016 (A/H5N8) segment 1 (PB2) 4185.6 0.000000e+00 2275/2280 (99%) EPI863854 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 1 (PB2) 4185.6 0.000000e+00 2275/2280 (99%) EPI1117250 A/T_Dk/NL-Werkendam/16014159-001/2016 (A/H5N5) segment 1 (PB2) 4183.8 0.000000e+00 2275/2280 (99%) EPI1019787 A/T_Dk/NL-Rotterdam/16014155-001/2016 (A/H5N8) segment 1 (PB2) 4183.8 0.000000e+00 2275/2280 (99%) EPI1019691 A/Gull1/NL-Marker Wadden/16014466-011/2016 (A/H5N8) segment 1 (PB2) 4183.8 0.000000e+00 2275/2280 (99%) EPI1019659 A/Go/NL-Roggebotsluis/16014462-010/2016 (A/H5N8) segment 1 (PB2) 4183.8 0.000000e+00 2275/2280 (99%) EPI1019571 A/Eur_Wig/NL-Leeuwarden/16015699-002/2016 (A/H5N8) segment 1 (PB2) 4183.8 0.000000e+00 2275/2280 (99%) EPI1019539 A/Eur_Wig/NL-Ferwert/16015273-002/2016 (A/H5N8) segment 1 (PB2) 4183.8 0.000000e+00 2275/2280 (99%) EPI1019443 A/Crow/NL-Oostwoud/16015372-004/2016 (A/H5N8) segment 1 (PB2) 4183.8 0.000000e+00 2275/2280 (99%) EPI1019419 A/Ch/NL-Hiaure/16016112-001-005/2016 (A/H5N8) segment 1 (PB2) 4183.8 0.000000e+00 2275/2280 (99%) EPI1019371 A/Bl_H_gull/NL-Slootdorp/16014102-002/2016 (A/H5N8) segment 1 (PB2) 4183.8 0.000000e+00 2275/2280 (99%) EPI969251 A/Tufted Duck/Switzerland/V237/2016 (A/H5N8) segment 1 (PB2) 4183.8 0.000000e+00 2275/2280 (99%) EPI1019875 A/Teal/NL-Ferwert/16015273-013/2016 (A/H5N8) segment 1 (PB2) 4178.2 0.000000e+00 2274/2280 (99%) EPI1019867 A/T_Dk/NL-Zuidoost Beemster/16014148-009/2016 (A/H5N8) segment 1 (PB2) 4178.2 0.000000e+00 2274/2280 (99%) EPI1019859 A/T_Dk/NL-Zuidoost Beemster/16014148-002/2016 (A/H5N8) segment 1 (PB2) 4178.2 0.000000e+00 2274/2280 (99%) EPI1019851 A/T_Dk/NL-Zeewolde/16013976-006/2016 (A/H5N8) segment 1 (PB2) 4178.2 0.000000e+00 2274/2280 (99%) EPI1019827 A/T_Dk/NL-Zeewolde/16013976-004/2016 (A/H5N8) segment 1 (PB2) 4178.2 0.000000e+00 2274/2280 (99%) EPI1019819 A/T_Dk/NL-Zeewolde/16013976-001-003/2016 (A/H5N8) segment 1 (PB2) 4178.2 0.000000e+00 2274/2280 (99%) EPI1019811 A/T_Dk/NL-Zeewolde/16013976-001/2016 (A/H5N8) segment 1 (PB2) 4178.2 0.000000e+00 2274/2280 (99%) EPI1019803 A/T_Dk/NL-Werkendam/16014159-003/2016 (A/H5N8) segment 1 (PB2) 4178.2 0.000000e+00 2274/2280 (99%) EPI1019755 A/Sea_eagle/NL-Assen/16015398-002/2016 (A/H5N8) segment 1 (PB2) 4178.2 0.000000e+00 2274/2280 (99%) EPI1019651 A/G_c_grebe/NL-Monnickendam/16013865-009-010/2016 (A/H5N8) segment 1 (PB2) 4178.2 0.000000e+00 2274/2280 (99%) EPI1019563 A/Eur_Wig/NL-Groningen/16015376-003/2016 (A/H5N8) segment 1 (PB2) 4178.2 0.000000e+00 2274/2280 (99%) EPI954780 A/Common_tern/Hungary/8187/2017 (A/H5N8) segment 1 (PB2) 4178.2 0.000000e+00 2274/2280 (99%) EPI916719 A/turkey/Germany-SH/R8595/2016 (A/H5N8) segment 1 (PB2) 4178.2 0.000000e+00 2274/2280 (99%) EPI895486 A/domestic duck/Germany-MV/R9869/2016 (A/H5N8) segment 1 (PB2) 4178.2 0.000000e+00 2274/2280 (99%) EPI869942 A/herring gull/Poland/84/2016 (A/H5N8) segment 1 (PB2) 4178.2 0.000000e+00 2274/2280 (99%) EPI860399 A/tufted_duck/Germany/AR8459-L01988/2016 (A/H5N8) segment 1 (PB2) 4178.2 0.000000e+00 2274/2280 (99%) EPI859660 A/tufted_duck/Germany/AR8444-L01986/2016 (A/H5N8) segment 1 (PB2) 4178.2 0.000000e+00 2274/2280 (99%) EPI967463 A/domestic duck/Germany-MV/R9764/2016 (A/H5N8) segment 1 (PB2) 4174.5 0.000000e+00 2273/2280 (99%) EPI1019795 A/T_Dk/NL-Werkendam/16014159-002/2016 (A/H5N8) segment 1 (PB2) 4172.7 0.000000e+00 2273/2280 (99%) EPI1019715 A/M_Swan/NL-Roggebotsluis/16014462-019/2016 (A/H5N8) segment 1 (PB2) 4172.7 0.000000e+00 2273/2280 (99%) EPI1019595 A/Eur_Wig/NL-Terschelling/16015692-010/2016 (A/H5N8) segment 1 (PB2) 4172.7 0.000000e+00 2273/2280 (99%) EPI1019483 A/Dk/NL-Rotterdam/16014008-001-005/2016 (A/H5N8) segment 1 (PB2) 4172.7 0.000000e+00 2273/2280 (99%) EPI860391 A/tufted_duck/Germany/AR8444-L01987/2016 (A/H5N8) segment 1 (PB2) 4172.7 0.000000e+00 2273/2280 (99%) EPI860494 A/tufted duck/Germany-SH/R8444/2016 (A/H5N8) segment 1 (PB2) 4170.9 0.000000e+00 2270/2276 (99%) EPI909361 A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 1 (PB2) 4169.0 0.000000e+00 2272/2280 (99%) EPI1019763 A/T_Dk/NL-Almeerder Zand/16014341-003/2016 (A/H5N8) segment 1 (PB2) 4167.2 0.000000e+00 2272/2280 (99%) EPI1019627 A/Eur_Wig/NL-Wormer/16016143-002/2016 (A/H5N8) segment 1 (PB2) 4167.2 0.000000e+00 2272/2280 (99%) EPI1019499 A/Eur_Wig/NL-Akkrum/16015817-003/2016 (A/H5N8) segment 1 (PB2) 4167.2 0.000000e+00 2272/2280 (99%) EPI990783 A/mute swan/Germany-NI/AR1529-L02145/2017 (A/H5N8) segment 1 (PB2) 4167.2 0.000000e+00 2272/2280 (99%) EPI1044543 A/mute swan/Kaliningrad/132/2017 (A/H5N8) segment 1 (PB2) 4161.6 0.000000e+00 2271/2280 (99%) EPI1019611 A/Eur_Wig/NL-Walterswald/16015923-003/2016 (A/H5N8) segment 1 (PB2) 4161.6 0.000000e+00 2271/2280 (99%) EPI1019531 A/Eur_Wig/NL-Enumatil-Groningen/16015704-001/2016 (A/H5N8) segment 1 (PB2) 4161.6 0.000000e+00 2271/2280 (99%) EPI909433 A/goose/Krasnodar/3144/2017 (A/H5N8) segment 1 (PB2) 4161.6 0.000000e+00 2271/2280 (99%) EPI932937 A/chicken/Germany-MV/R10048/2016 (A/H5N8) segment 1 (PB2) 4157.9 0.000000e+00 2268/2278 (99%) EPI863862 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 1 (PB2) 4157.9 0.000000e+00 2270/2280 (99%) EPI1019555 A/Eur_Wig/NL-Greonterp/16015653-001/2016 (A/H5N8) segment 1 (PB2) 4156.1 0.000000e+00 2270/2280 (99%) EPI869684 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 1 (PB2) 4156.1 0.000000e+00 2270/2280 (99%) EPI1019675 A/Grey_Go/NL-Groot-Ammers/16015901-012/2016 (A/H5N8) segment 1 (PB2) 4150.5 0.000000e+00 2269/2280 (99%) EPI1019619 A/Eur_Wig/NL-West Graftdijk/16015746-003/2016 (A/H5N8) segment 1 (PB2) 4150.5 0.000000e+00 2269/2280 (99%) EPI1019475 A/Dk/NL-Kamperveen/16016104-001-005/2016 (A/H5N8) segment 1 (PB2) 4150.5 0.000000e+00 2269/2280 (99%) EPI1019427 A/Ch/NL-Rhenen/16016141-006/2016 (A/H5N8) segment 1 (PB2) 4150.5 0.000000e+00 2269/2280 (99%) EPI1019395 A/Ch/NL-Abbega/X16015736/2016 (A/H5N8) segment 1 (PB2) 4150.5 0.000000e+00 2269/2280 (99%) EPI954874 A/Mallard/Hungary/1574a/2017 (A/H5N8) segment 1 (PB2) 4150.5 0.000000e+00 2269/2280 (99%) EPI954858 A/Mallard/Hungary/1574b/2017 (A/H5N8) segment 1 (PB2) 4150.5 0.000000e+00 2269/2280 (99%) EPI1019731 A/Mal/NL-IJsselmuiden/16015448-002/2016 (A/H5N8) segment 1 (PB2) 4145.0 0.000000e+00 2268/2280 (99%) EPI1019547 A/Eur_Wig/NL-Gouda/16015824-001/2016 (A/H5N8) segment 1 (PB2) 4145.0 0.000000e+00 2268/2280 (99%) EPI1019523 A/Eur_Wig/NL-Drieborg (Dollard)/16015513-001/2016 (A/H5N8) segment 1 (PB2) 4145.0 0.000000e+00 2268/2280 (99%) EPI1019515 A/Eur_Wig/NL-De Waal (Texel)/16014891-004/2016 (A/H5N8) segment 1 (PB2) 4145.0 0.000000e+00 2268/2280 (99%) EPI1019507 A/Eur_Wig/NL-De Waal (Texel)/16014891-003/2016 (A/H5N8) segment 1 (PB2) 4145.0 0.000000e+00 2268/2280 (99%) EPI1007672 A/peacock/Belgium/1017/2017 (A/H5N8) segment 1 (PB2) 4145.0 0.000000e+00 2268/2280 (99%) EPI1007664 A/chicken/Belgium/807/2017 (A/H5N8) segment 1 (PB2) 4145.0 0.000000e+00 2268/2280 (99%) EPI954810 A/Greylag_goose/Hungary/320/2017 (A/H5N8) segment 1 (PB2) 4145.0 0.000000e+00 2268/2280 (99%) EPI954756 A/Peregrine_falcon/Hungary/4882/2017 (A/H5N8) segment 1 (PB2) 4145.0 0.000000e+00 2268/2280 (99%) EPI942932 A/turkey/England/003778/2017 (A/H5N8) segment 1 (PB2) 4141.3 0.000000e+00 2267/2280 (99%) EPI868845 A/turkey/England/052131/2016 (A/H5N8) segment 1 (PB2) 4141.3 0.000000e+00 2267/2280 (99%) EPI1127535 A/mute swan/Shimane/3211A001/2017 (A/H5N6) segment 1 (PB2) 4139.5 0.000000e+00 2267/2280 (99%) EPI1019643 A/Eur_Wig/NL-Zwolle/16015820-002/2016 (A/H5N8) segment 1 (PB2) 4139.5 0.000000e+00 2267/2280 (99%) EPI1019635 A/Eur_Wig/NL-Zoeterwoude/16015702-010/2016 (A/H5N8) segment 1 (PB2) 4139.5 0.000000e+00 2267/2280 (99%) EPI1019603 A/Eur_Wig/NL-Vianen/16015917-006/2016 (A/H5N8) segment 1 (PB2) 4139.5 0.000000e+00 2267/2280 (99%) EPI1019587 A/Eur_Wig/NL-Reeuwijk/16015903-003/2016 (A/H5N8) segment 1 (PB2) 4139.5 0.000000e+00 2267/2280 (99%) EPI1019491 A/Dk/NL-Stolwijk/16016291-016-020/2016 (A/H5N8) segment 1 (PB2) 4139.5 0.000000e+00 2267/2280 (99%) EPI1019435 A/Ch/NL-Zoeterwoude/16016484-021-025/2016 (A/H5N8) segment 1 (PB2) 4139.5 0.000000e+00 2267/2280 (99%)
niman Posted December 31, 2017 Author Report Posted December 31, 2017 Descriptions Align Segment-ID Name Score E-Value Identity EPI1122891 A/chicken/Greece/39_2017b/2017 (A/H5N6) segment 2 (PB1) 4200.4 0.000000e+00 2274/2274 (100%) EPI1122875 A/chicken/Greece/39_2017/2017 (A/H5N6) segment 2 (PB1) 4200.4 0.000000e+00 2274/2274 (100%) EPI1122883 A/chicken/Greece/39_2017a/2017 (A/H5N6) segment 2 (PB1) 4196.7 0.000000e+00 2273/2274 (99%) EPI1117251 A/T_Dk/NL-Werkendam/16014159-001/2016 (A/H5N5) segment 2 (PB1) 4172.7 0.000000e+00 2269/2274 (99%) EPI1019844 A/T_Dk/NL-Zeewolde/16013976-005/2016 (A/H5N8) segment 2 (PB1) 4172.7 0.000000e+00 2269/2274 (99%) EPI1019836 A/T_Dk/NL-Zeewolde/16013976-004-006/2016 (A/H5N8) segment 2 (PB1) 4172.7 0.000000e+00 2269/2274 (99%) EPI1019788 A/T_Dk/NL-Rotterdam/16014155-001/2016 (A/H5N8) segment 2 (PB1) 4172.7 0.000000e+00 2269/2274 (99%) EPI1019780 A/T_Dk/NL-Roggebotsluis/16014462-015/2016 (A/H5N8) segment 2 (PB1) 4172.7 0.000000e+00 2269/2274 (99%) EPI1019724 A/Magpie/NL-Volendam/16014331-002/2016 (A/H5N8) segment 2 (PB1) 4172.7 0.000000e+00 2269/2274 (99%) EPI1019716 A/M_Swan/NL-Roggebotsluis/16014462-019/2016 (A/H5N8) segment 2 (PB1) 4172.7 0.000000e+00 2269/2274 (99%) EPI1019708 A/L-bl-ba-gull/NL-Sovon/16014324-014/2016 (A/H5N8) segment 2 (PB1) 4172.7 0.000000e+00 2269/2274 (99%) EPI1019692 A/Gull1/NL-Marker Wadden/16014466-011/2016 (A/H5N8) segment 2 (PB1) 4172.7 0.000000e+00 2269/2274 (99%) EPI1019684 A/Gull/NL-Marker Wadden/16014466-020/2016 (A/H5N8) segment 2 (PB1) 4172.7 0.000000e+00 2269/2274 (99%) EPI1019652 A/G_c_grebe/NL-Monnickendam/16013865-009-010/2016 (A/H5N8) segment 2 (PB1) 4172.7 0.000000e+00 2269/2274 (99%) EPI1019596 A/Eur_Wig/NL-Terschelling/16015692-010/2016 (A/H5N8) segment 2 (PB1) 4172.7 0.000000e+00 2269/2274 (99%) EPI1019460 A/Dk/NL-Biddinghuizen/16015083-016-020/2016 (A/H5N8) segment 2 (PB1) 4172.7 0.000000e+00 2269/2274 (99%) EPI1019388 A/C_Gull/NL-Slootdorp/16014102-003/2016 (A/H5N8) segment 2 (PB1) 4172.7 0.000000e+00 2269/2274 (99%) EPI1019380 A/Buzzard/NL-Durgerdam/16015100-004/2016 (A/H5N8) segment 2 (PB1) 4172.7 0.000000e+00 2269/2274 (99%) EPI1019372 A/Bl_H_gull/NL-Slootdorp/16014102-002/2016 (A/H5N8) segment 2 (PB1) 4172.7 0.000000e+00 2269/2274 (99%) EPI1019364 A/Bk_swan/NL-Den Oever/16013973-002/2016 (A/H5N8) segment 2 (PB1) 4172.7 0.000000e+00 2269/2274 (99%) EPI922322 A/turkey/Germany-SH/R8595/2016 (A/H5N8) segment 2 (PB1) 4172.7 0.000000e+00 2269/2274 (99%) EPI909458 A/chicken/Kalmykia/2643/2016 (A/H5N8) segment 2 (PB1) 4172.7 0.000000e+00 2269/2274 (99%) EPI909450 A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 2 (PB1) 4172.7 0.000000e+00 2269/2274 (99%) EPI860495 A/tufted duck/Germany-SH/R8444/2016 (A/H5N8) segment 2 (PB1) 4172.7 0.000000e+00 2269/2274 (99%) EPI860390 A/tufted_duck/Germany/AR8444-L01987/2016 (A/H5N8) segment 2 (PB1) 4172.7 0.000000e+00 2269/2274 (99%) EPI860234 A/wild duck/Poland/82A/2016 (A/H5N8) segment 2 (PB1) 4172.7 0.000000e+00 2269/2274 (99%) EPI967462 A/domestic duck/Germany-MV/R9764/2016 (A/H5N8) segment 2 (PB1) 4169.0 0.000000e+00 2268/2274 (99%) EPI1044546 A/mute swan/Kaliningrad/132/2017 (A/H5N8) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI1019876 A/Teal/NL-Ferwert/16015273-013/2016 (A/H5N8) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI1019868 A/T_Dk/NL-Zuidoost Beemster/16014148-009/2016 (A/H5N8) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI1019860 A/T_Dk/NL-Zuidoost Beemster/16014148-002/2016 (A/H5N8) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI1019852 A/T_Dk/NL-Zeewolde/16013976-006/2016 (A/H5N8) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI1019828 A/T_Dk/NL-Zeewolde/16013976-004/2016 (A/H5N8) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI1019820 A/T_Dk/NL-Zeewolde/16013976-001-003/2016 (A/H5N8) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI1019812 A/T_Dk/NL-Zeewolde/16013976-001/2016 (A/H5N8) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI1019804 A/T_Dk/NL-Werkendam/16014159-003/2016 (A/H5N8) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI1019796 A/T_Dk/NL-Werkendam/16014159-002/2016 (A/H5N8) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI1019772 A/T_Dk/NL-Monnickendam/16013865-006-008/2016 (A/H5N8) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI1019756 A/Sea_eagle/NL-Assen/16015398-002/2016 (A/H5N8) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI1019668 A/Gr_bk_bd_gull/NL-Slootdorp/16014102-005/2016 (A/H5N8) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI1019660 A/Go/NL-Roggebotsluis/16014462-010/2016 (A/H5N8) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI1019572 A/Eur_Wig/NL-Leeuwarden/16015699-002/2016 (A/H5N8) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI1019564 A/Eur_Wig/NL-Groningen/16015376-003/2016 (A/H5N8) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI1019540 A/Eur_Wig/NL-Ferwert/16015273-002/2016 (A/H5N8) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI1019500 A/Eur_Wig/NL-Akkrum/16015817-003/2016 (A/H5N8) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI1019484 A/Dk/NL-Rotterdam/16014008-001-005/2016 (A/H5N8) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI1019468 A/Dk/NL-Biddinghuizen/16015145-021-025/2016 (A/H5N8) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI1019452 A/Dk/NL-Biddinghuizen/16014829-011-015/2016 (A/H5N8) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI1019420 A/Ch/NL-Hiaure/16016112-001-005/2016 (A/H5N8) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI1019412 A/Ch/NL-Den Oever/16014231-001/2016 (A/H5N8) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI969252 A/Tufted Duck/Switzerland/V237/2016 (A/H5N8) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI961447 A/gadwall/Kurgan/2442/2016 (A/H5N8) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI954781 A/Common_tern/Hungary/8187/2017 (A/H5N8) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI909362 A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI885204 A/domestic duck/Germany-MV/R9869/2016 (A/H5N8) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI881281 A/chicken/Germany-MV/R8790/2016 (A/H5N8) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI881276 A/chicken/Germany-SH/R8758/2016 (A/H5N8) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI863863 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI860398 A/tufted_duck/Germany/AR8459-L01988/2016 (A/H5N8) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI859659 A/tufted_duck/Germany/AR8444-L01986/2016 (A/H5N8) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI1019764 A/T_Dk/NL-Almeerder Zand/16014341-003/2016 (A/H5N8) segment 2 (PB1) 4161.6 0.000000e+00 2267/2274 (99%) EPI1019748 A/P_falcon/NL-Vrouwenpolder (Zeeland)/16015510-001/2016 (A/H5N8) segment 2 (PB1) 4161.6 0.000000e+00 2267/2274 (99%) EPI1019700 A/Gull10/NL-Marker Wadden/16014466-014/2016 (A/H5N8) segment 2 (PB1) 4161.6 0.000000e+00 2267/2274 (99%) EPI1019628 A/Eur_Wig/NL-Wormer/16016143-002/2016 (A/H5N8) segment 2 (PB1) 4161.6 0.000000e+00 2267/2274 (99%) EPI1019532 A/Eur_Wig/NL-Enumatil-Groningen/16015704-001/2016 (A/H5N8) segment 2 (PB1) 4161.6 0.000000e+00 2267/2274 (99%) EPI1019396 A/Ch/NL-Abbega/X16015736/2016 (A/H5N8) segment 2 (PB1) 4161.6 0.000000e+00 2267/2274 (99%) EPI956130 A/chicken/Germany-NI/R11406/2016 (A/H5N8) segment 2 (PB1) 4161.6 0.000000e+00 2267/2274 (99%) EPI931205 A/chicken/Germany-MV/R10048/2016 (A/H5N8) segment 2 (PB1) 4161.6 0.000000e+00 2267/2274 (99%) EPI1019740 A/Mal/NL-Mastenbroek/16015378-002/2016 (A/H5N8) segment 2 (PB1) 4156.1 0.000000e+00 2266/2274 (99%) EPI1019612 A/Eur_Wig/NL-Walterswald/16015923-003/2016 (A/H5N8) segment 2 (PB1) 4156.1 0.000000e+00 2266/2274 (99%) EPI1019444 A/Crow/NL-Oostwoud/16015372-004/2016 (A/H5N8) segment 2 (PB1) 4156.1 0.000000e+00 2266/2274 (99%) EPI863855 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 2 (PB1) 4152.4 0.000000e+00 2265/2274 (99%) EPI1019556 A/Eur_Wig/NL-Greonterp/16015653-001/2016 (A/H5N8) segment 2 (PB1) 4150.5 0.000000e+00 2265/2274 (99%) EPI962063 A/Turkey/Hungary/53136/2016 (A/H5N8) segment 2 (PB1) 4150.5 0.000000e+00 2265/2274 (99%) EPI954811 A/Greylag_goose/Hungary/320/2017 (A/H5N8) segment 2 (PB1) 4150.5 0.000000e+00 2265/2274 (99%) EPI954661 A/Goose/Hungary/1030/2017 (A/H5N8) segment 2 (PB1) 4150.5 0.000000e+00 2265/2274 (99%) EPI954581 A/chicken/Italy/17VIR653-12/2017 (A/H5N8) segment 2 (PB1) 4150.5 0.000000e+00 2265/2274 (99%) EPI859205 A/domestic_turkey/Hungary/53433/2016 (A/H5N8) segment 2 (PB1) 4150.5 0.000000e+00 2265/2274 (99%) EPI863832 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 2 (PB1) 4148.7 0.000000e+00 2264/2274 (99%) EPI863824 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 2 (PB1) 4148.7 0.000000e+00 2264/2274 (99%) EPI1019548 A/Eur_Wig/NL-Gouda/16015824-001/2016 (A/H5N8) segment 2 (PB1) 4145.0 0.000000e+00 2264/2274 (99%) EPI1019516 A/Eur_Wig/NL-De Waal (Texel)/16014891-004/2016 (A/H5N8) segment 2 (PB1) 4145.0 0.000000e+00 2264/2274 (99%) EPI1007673 A/peacock/Belgium/1017/2017 (A/H5N8) segment 2 (PB1) 4145.0 0.000000e+00 2264/2274 (99%) EPI1007665 A/chicken/Belgium/807/2017 (A/H5N8) segment 2 (PB1) 4145.0 0.000000e+00 2264/2274 (99%) EPI954875 A/Mallard/Hungary/1574a/2017 (A/H5N8) segment 2 (PB1) 4145.0 0.000000e+00 2264/2274 (99%) EPI954867 A/White_fronted_goose/Hungary/801/2017 (A/H5N8) segment 2 (PB1) 4145.0 0.000000e+00 2264/2274 (99%) EPI954859 A/Mallard/Hungary/1574b/2017 (A/H5N8) segment 2 (PB1) 4145.0 0.000000e+00 2264/2274 (99%) EPI954819 A/GuineaFowl/Hungary/596/2017 (A/H5N8) segment 2 (PB1) 4145.0 0.000000e+00 2264/2274 (99%) EPI954733 A/Mute swan/Hungary/3513/2017 (A/H5N8) segment 2 (PB1) 4145.0 0.000000e+00 2264/2274 (99%) EPI909466 A/chicken/Astrakhan/3131/2016 (A/H5N8) segment 2 (PB1) 4145.0 0.000000e+00 2264/2274 (99%) EPI863847 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 2 (PB1) 4145.0 0.000000e+00 2263/2274 (99%) EPI860526 A/goose/Hungary/55128/2016 (A/H5N8) segment 2 (PB1) 4145.0 0.000000e+00 2264/2274 (99%) EPI860511 A/Mulard_duck/Hungary/54494/2016 (A/H5N8) segment 2 (PB1) 4145.0 0.000000e+00 2264/2274 (99%) EPI1032550 A/Mulard_duck/Hungary/59163/2016 (A/H5N8) segment 2 (PB1) 4139.5 0.000000e+00 2263/2274 (99%) EPI1032490 A/Goose/Hungary/17051/2017 (A/H5N8) segment 2 (PB1) 4139.5 0.000000e+00 2263/2274 (99%) EPI1032474 A/Goose/Hungary/17261/2017 (A/H5N8) segment 2 (PB1) 4139.5 0.000000e+00 2263/2274 (99%) EPI1019588 A/Eur_Wig/NL-Reeuwijk/16015903-003/2016 (A/H5N8) segment 2 (PB1) 4139.5 0.000000e+00 2263/2274 (99%) EPI1019524 A/Eur_Wig/NL-Drieborg (Dollard)/16015513-001/2016 (A/H5N8) segment 2 (PB1) 4139.5 0.000000e+00 2263/2274 (99%) EPI1019492 A/Dk/NL-Stolwijk/16016291-016-020/2016 (A/H5N8) segment 2 (PB1) 4139.5 0.000000e+00 2263/2274 (99%) EPI1019436 A/Ch/NL-Zoeterwoude/16016484-021-025/2016 (A/H5N8) segment 2 (PB1) 4139.5 0.000000e+00 2263/2274 (99%)
niman Posted December 31, 2017 Author Report Posted December 31, 2017 Descriptions Align Segment-ID Name Score E-Value Identity EPI1122892 A/chicken/Greece/39_2017b/2017 (A/H5N6) segment 3 (PA) 3973.3 0.000000e+00 2151/2151 (100%) EPI1122884 A/chicken/Greece/39_2017a/2017 (A/H5N6) segment 3 (PA) 3960.3 0.000000e+00 2148/2151 (99%) EPI1122876 A/chicken/Greece/39_2017/2017 (A/H5N6) segment 3 (PA) 3960.3 0.000000e+00 2148/2151 (99%) EPI1019730 A/Mal/NL-IJsselmuiden/16015448-002/2016 (A/H5N8) segment 3 (PA) 3945.6 0.000000e+00 2146/2151 (99%) EPI1019634 A/Eur_Wig/NL-Zoeterwoude/16015702-010/2016 (A/H5N8) segment 3 (PA) 3945.6 0.000000e+00 2146/2151 (99%) EPI1019578 A/Eur_Wig/NL-Leidschendam/16015697-007/2016 (A/H5N8) segment 3 (PA) 3945.6 0.000000e+00 2146/2151 (99%) EPI1019434 A/Ch/NL-Zoeterwoude/16016484-021-025/2016 (A/H5N8) segment 3 (PA) 3945.6 0.000000e+00 2146/2151 (99%) EPI1019426 A/Ch/NL-Rhenen/16016141-006/2016 (A/H5N8) segment 3 (PA) 3945.6 0.000000e+00 2146/2151 (99%) EPI868847 A/turkey/England/052131/2016 (A/H5N8) segment 3 (PA) 3945.6 0.000000e+00 2146/2151 (99%) EPI1019674 A/Grey_Go/NL-Groot-Ammers/16015901-012/2016 (A/H5N8) segment 3 (PA) 3940.0 0.000000e+00 2145/2151 (99%) EPI1019642 A/Eur_Wig/NL-Zwolle/16015820-002/2016 (A/H5N8) segment 3 (PA) 3940.0 0.000000e+00 2145/2151 (99%) EPI1019618 A/Eur_Wig/NL-West Graftdijk/16015746-003/2016 (A/H5N8) segment 3 (PA) 3940.0 0.000000e+00 2145/2151 (99%) EPI1019602 A/Eur_Wig/NL-Vianen/16015917-006/2016 (A/H5N8) segment 3 (PA) 3940.0 0.000000e+00 2145/2151 (99%) EPI1019514 A/Eur_Wig/NL-De Waal (Texel)/16014891-004/2016 (A/H5N8) segment 3 (PA) 3940.0 0.000000e+00 2145/2151 (99%) EPI1019506 A/Eur_Wig/NL-De Waal (Texel)/16014891-003/2016 (A/H5N8) segment 3 (PA) 3940.0 0.000000e+00 2145/2151 (99%) EPI1019474 A/Dk/NL-Kamperveen/16016104-001-005/2016 (A/H5N8) segment 3 (PA) 3940.0 0.000000e+00 2145/2151 (99%) EPI1019402 A/Ch/NL-Boven Leeuwen/16016151-006-010/2016 (A/H5N8) segment 3 (PA) 3940.0 0.000000e+00 2145/2151 (99%) EPI990766 A/eurasian wigeon/Germany-NI/AR249-L02143/2017 (A/H5N8) segment 3 (PA) 3940.0 0.000000e+00 2145/2151 (99%) EPI942934 A/turkey/England/003778/2017 (A/H5N8) segment 3 (PA) 3940.0 0.000000e+00 2145/2151 (99%) EPI909427 A/turkey/Rostov/11/2017 (A/H5N8) segment 3 (PA) 3940.0 0.000000e+00 2145/2151 (99%) EPI1019842 A/T_Dk/NL-Zeewolde/16013976-005/2016 (A/H5N8) segment 3 (PA) 3934.5 0.000000e+00 2144/2151 (99%) EPI1019834 A/T_Dk/NL-Zeewolde/16013976-004-006/2016 (A/H5N8) segment 3 (PA) 3934.5 0.000000e+00 2144/2151 (99%) EPI1019786 A/T_Dk/NL-Rotterdam/16014155-001/2016 (A/H5N8) segment 3 (PA) 3934.5 0.000000e+00 2144/2151 (99%) EPI1019698 A/Gull10/NL-Marker Wadden/16014466-014/2016 (A/H5N8) segment 3 (PA) 3934.5 0.000000e+00 2144/2151 (99%) EPI1019594 A/Eur_Wig/NL-Terschelling/16015692-010/2016 (A/H5N8) segment 3 (PA) 3934.5 0.000000e+00 2144/2151 (99%) EPI1019570 A/Eur_Wig/NL-Leeuwarden/16015699-002/2016 (A/H5N8) segment 3 (PA) 3934.5 0.000000e+00 2144/2151 (99%) EPI1019554 A/Eur_Wig/NL-Greonterp/16015653-001/2016 (A/H5N8) segment 3 (PA) 3934.5 0.000000e+00 2144/2151 (99%) EPI1019490 A/Dk/NL-Stolwijk/16016291-016-020/2016 (A/H5N8) segment 3 (PA) 3934.5 0.000000e+00 2144/2151 (99%) EPI1019482 A/Dk/NL-Rotterdam/16014008-001-005/2016 (A/H5N8) segment 3 (PA) 3934.5 0.000000e+00 2144/2151 (99%) EPI969253 A/Tufted Duck/Switzerland/V237/2016 (A/H5N8) segment 3 (PA) 3934.5 0.000000e+00 2144/2151 (99%) EPI909459 A/chicken/Kalmykia/2643/2016 (A/H5N8) segment 3 (PA) 3934.5 0.000000e+00 2144/2151 (99%) EPI909451 A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 3 (PA) 3934.5 0.000000e+00 2144/2151 (99%) EPI860400 A/tufted_duck/Germany/AR8459-L01988/2016 (A/H5N8) segment 3 (PA) 3934.5 0.000000e+00 2144/2151 (99%) EPI860235 A/wild duck/Poland/82A/2016 (A/H5N8) segment 3 (PA) 3934.5 0.000000e+00 2144/2151 (99%) EPI863848 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 3 (PA) 3930.8 0.000000e+00 2143/2151 (99%) EPI1045608 A/chicken/Rostov/44/2017 (A/H5N8) segment 3 (PA) 3928.9 0.000000e+00 2143/2151 (99%) EPI1019866 A/T_Dk/NL-Zuidoost Beemster/16014148-009/2016 (A/H5N8) segment 3 (PA) 3928.9 0.000000e+00 2143/2151 (99%) EPI1019858 A/T_Dk/NL-Zuidoost Beemster/16014148-002/2016 (A/H5N8) segment 3 (PA) 3928.9 0.000000e+00 2143/2151 (99%) EPI1019778 A/T_Dk/NL-Roggebotsluis/16014462-015/2016 (A/H5N8) segment 3 (PA) 3928.9 0.000000e+00 2143/2151 (99%) EPI1019754 A/Sea_eagle/NL-Assen/16015398-002/2016 (A/H5N8) segment 3 (PA) 3928.9 0.000000e+00 2143/2151 (99%) EPI1019682 A/Gull/NL-Marker Wadden/16014466-020/2016 (A/H5N8) segment 3 (PA) 3928.9 0.000000e+00 2143/2151 (99%) EPI1019586 A/Eur_Wig/NL-Reeuwijk/16015903-003/2016 (A/H5N8) segment 3 (PA) 3928.9 0.000000e+00 2143/2151 (99%) EPI1019546 A/Eur_Wig/NL-Gouda/16015824-001/2016 (A/H5N8) segment 3 (PA) 3928.9 0.000000e+00 2143/2151 (99%) EPI1019418 A/Ch/NL-Hiaure/16016112-001-005/2016 (A/H5N8) segment 3 (PA) 3928.9 0.000000e+00 2143/2151 (99%) EPI1019386 A/C_Gull/NL-Slootdorp/16014102-003/2016 (A/H5N8) segment 3 (PA) 3928.9 0.000000e+00 2143/2151 (99%) EPI961448 A/gadwall/Kurgan/2442/2016 (A/H5N8) segment 3 (PA) 3928.9 0.000000e+00 2143/2151 (99%) EPI954555 A/swan/Italy/17VIR537-2/2017 (A/H5N8) segment 3 (PA) 3928.9 0.000000e+00 2143/2151 (99%) EPI881285 A/chicken/Germany-MV/R8790/2016 (A/H5N8) segment 3 (PA) 3928.9 0.000000e+00 2143/2151 (99%) EPI869686 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 3 (PA) 3928.9 0.000000e+00 2143/2151 (99%) EPI863864 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 3 (PA) 3928.9 0.000000e+00 2143/2151 (99%) EPI860392 A/tufted_duck/Germany/AR8444-L01987/2016 (A/H5N8) segment 3 (PA) 3928.9 0.000000e+00 2143/2151 (99%) EPI859658 A/tufted_duck/Germany/AR8444-L01986/2016 (A/H5N8) segment 3 (PA) 3928.9 0.000000e+00 2143/2151 (99%) EPI863833 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 3 (PA) 3927.1 0.000000e+00 2142/2151 (99%) EPI863825 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 3 (PA) 3927.1 0.000000e+00 2142/2151 (99%) EPI877540 A/domestic duck/Germany-MV/R9869/2016 (A/H5N8) segment 3 (PA) 3925.3 0.000000e+00 2142/2151 (99%) EPI1040236 A/chicken/Italy/17VIR3078/2017 (A/H5N8) segment 3 (PA) 3923.4 0.000000e+00 2142/2151 (99%) EPI1019874 A/Teal/NL-Ferwert/16015273-013/2016 (A/H5N8) segment 3 (PA) 3923.4 0.000000e+00 2142/2151 (99%) EPI1019762 A/T_Dk/NL-Almeerder Zand/16014341-003/2016 (A/H5N8) segment 3 (PA) 3923.4 0.000000e+00 2142/2151 (99%) EPI1019610 A/Eur_Wig/NL-Walterswald/16015923-003/2016 (A/H5N8) segment 3 (PA) 3923.4 0.000000e+00 2142/2151 (99%) EPI1019538 A/Eur_Wig/NL-Ferwert/16015273-002/2016 (A/H5N8) segment 3 (PA) 3923.4 0.000000e+00 2142/2151 (99%) EPI1019522 A/Eur_Wig/NL-Drieborg (Dollard)/16015513-001/2016 (A/H5N8) segment 3 (PA) 3923.4 0.000000e+00 2142/2151 (99%) EPI1019498 A/Eur_Wig/NL-Akkrum/16015817-003/2016 (A/H5N8) segment 3 (PA) 3923.4 0.000000e+00 2142/2151 (99%) EPI1019458 A/Dk/NL-Biddinghuizen/16015083-016-020/2016 (A/H5N8) segment 3 (PA) 3923.4 0.000000e+00 2142/2151 (99%) EPI1019394 A/Ch/NL-Abbega/X16015736/2016 (A/H5N8) segment 3 (PA) 3923.4 0.000000e+00 2142/2151 (99%) EPI1019362 A/Bk_swan/NL-Den Oever/16013973-002/2016 (A/H5N8) segment 3 (PA) 3923.4 0.000000e+00 2142/2151 (99%) EPI1007674 A/peacock/Belgium/1017/2017 (A/H5N8) segment 3 (PA) 3923.4 0.000000e+00 2142/2151 (99%) EPI1007666 A/chicken/Belgium/807/2017 (A/H5N8) segment 3 (PA) 3923.4 0.000000e+00 2142/2151 (99%) EPI967466 A/turkey/Germany-NI/R9807/2016 (A/H5N8) segment 3 (PA) 3923.4 0.000000e+00 2142/2151 (99%) EPI954873 A/Mallard/Hungary/1574a/2017 (A/H5N8) segment 3 (PA) 3923.4 0.000000e+00 2142/2151 (99%) EPI954857 A/Mallard/Hungary/1574b/2017 (A/H5N8) segment 3 (PA) 3923.4 0.000000e+00 2142/2151 (99%) EPI954809 A/Greylag_goose/Hungary/320/2017 (A/H5N8) segment 3 (PA) 3923.4 0.000000e+00 2142/2151 (99%) EPI954779 A/Common_tern/Hungary/8187/2017 (A/H5N8) segment 3 (PA) 3923.4 0.000000e+00 2142/2151 (99%) EPI931206 A/chicken/Germany-MV/R10048/2016 (A/H5N8) segment 3 (PA) 3923.4 0.000000e+00 2142/2151 (99%) EPI909443 A/mute swan/Krasnodar/25/2017 (A/H5N8) segment 3 (PA) 3923.4 0.000000e+00 2142/2151 (99%) EPI888087 A/wigeon/Italy/17VIR57-3/2017 (A/H5N8) segment 3 (PA) 3923.4 0.000000e+00 2142/2151 (99%) EPI861185 A/turkey/Germany-SH/R8595/2016 (A/H5N8) segment 3 (PA) 3923.4 0.000000e+00 2142/2151 (99%) EPI863856 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 3 (PA) 3919.7 0.000000e+00 2140/2151 (99%) EPI1019850 A/T_Dk/NL-Zeewolde/16013976-006/2016 (A/H5N8) segment 3 (PA) 3917.9 0.000000e+00 2141/2151 (99%) EPI1019826 A/T_Dk/NL-Zeewolde/16013976-004/2016 (A/H5N8) segment 3 (PA) 3917.9 0.000000e+00 2141/2151 (99%) EPI1019818 A/T_Dk/NL-Zeewolde/16013976-001-003/2016 (A/H5N8) segment 3 (PA) 3917.9 0.000000e+00 2141/2151 (99%) EPI1019810 A/T_Dk/NL-Zeewolde/16013976-001/2016 (A/H5N8) segment 3 (PA) 3917.9 0.000000e+00 2141/2151 (99%) EPI1019714 A/M_Swan/NL-Roggebotsluis/16014462-019/2016 (A/H5N8) segment 3 (PA) 3917.9 0.000000e+00 2141/2151 (99%) EPI1019530 A/Eur_Wig/NL-Enumatil-Groningen/16015704-001/2016 (A/H5N8) segment 3 (PA) 3917.9 0.000000e+00 2141/2151 (99%) EPI1019466 A/Dk/NL-Biddinghuizen/16015145-021-025/2016 (A/H5N8) segment 3 (PA) 3917.9 0.000000e+00 2141/2151 (99%) EPI1019450 A/Dk/NL-Biddinghuizen/16014829-011-015/2016 (A/H5N8) segment 3 (PA) 3917.9 0.000000e+00 2141/2151 (99%) EPI1019410 A/Ch/NL-Den Oever/16014231-001/2016 (A/H5N8) segment 3 (PA) 3917.9 0.000000e+00 2141/2151 (99%) EPI1019370 A/Bl_H_gull/NL-Slootdorp/16014102-002/2016 (A/H5N8) segment 3 (PA) 3917.9 0.000000e+00 2141/2151 (99%) EPI954755 A/Peregrine_falcon/Hungary/4882/2017 (A/H5N8) segment 3 (PA) 3917.9 0.000000e+00 2141/2151 (99%) EPI942942 A/chicken/Wales/000023/2016 (A/H5N8) segment 3 (PA) 3914.2 0.000000e+00 2140/2151 (99%) EPI909363 A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 3 (PA) 3914.2 0.000000e+00 2140/2151 (99%) EPI1045594 A/chicken/Shchyolkovo/47/2017 (A/H5N8) segment 3 (PA) 3912.3 0.000000e+00 2140/2151 (99%) EPI1019626 A/Eur_Wig/NL-Wormer/16016143-002/2016 (A/H5N8) segment 3 (PA) 3912.3 0.000000e+00 2140/2151 (99%) EPI990782 A/mute swan/Germany-NI/AR1529-L02145/2017 (A/H5N8) segment 3 (PA) 3912.3 0.000000e+00 2140/2151 (99%) EPI967670 A/domestic duck/Germany-MV/R9764/2016 (A/H5N8) segment 3 (PA) 3912.3 0.000000e+00 2141/2152 (99%) EPI959127 A/chicken/Germany-NI/R11406/2016 (A/H5N8) segment 3 (PA) 3912.3 0.000000e+00 2140/2151 (99%) EPI954603 A/turkey/Italy/17VIR1452-22/2017 (A/H5N8) segment 3 (PA) 3912.3 0.000000e+00 2140/2151 (99%) EPI954571 A/turkey/Italy/17VIR576-11/2017 (A/H5N8) segment 3 (PA) 3912.3 0.000000e+00 2140/2151 (99%) EPI909435 A/goose/Krasnodar/3144/2017 (A/H5N8) segment 3 (PA) 3912.3 0.000000e+00 2140/2151 (99%) EPI909419 A/chicken/Voronezh/20/2017 (A/H5N8) segment 3 (PA) 3912.3 0.000000e+00 2140/2151 (99%) EPI909411 A/chicken/Voronezh/19/2017 (A/H5N8) segment 3 (PA) 3912.3 0.000000e+00 2140/2151 (99%)
niman Posted December 31, 2017 Author Report Posted December 31, 2017 Descriptions Align Segment-ID Name Score E-Value Identity EPI1122894 A/chicken/Greece/39_2017b/2017 (A/H5N6) segment 5 (NP) 2765.6 0.000000e+00 1497/1497 (100%) EPI1122886 A/chicken/Greece/39_2017a/2017 (A/H5N6) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%) EPI1122878 A/chicken/Greece/39_2017/2017 (A/H5N6) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%) EPI1117254 A/T_Dk/NL-Werkendam/16014159-001/2016 (A/H5N5) segment 5 (NP) 2743.4 0.000000e+00 1493/1497 (99%) EPI1044548 A/mute swan/Kaliningrad/132/2017 (A/H5N8) segment 5 (NP) 2743.4 0.000000e+00 1493/1497 (99%) EPI1019791 A/T_Dk/NL-Werkendam/16014159-002/2016 (A/H5N8) segment 5 (NP) 2743.4 0.000000e+00 1493/1497 (99%) EPI1019783 A/T_Dk/NL-Rotterdam/16014155-001/2016 (A/H5N8) segment 5 (NP) 2743.4 0.000000e+00 1493/1497 (99%) EPI1019775 A/T_Dk/NL-Roggebotsluis/16014462-015/2016 (A/H5N8) segment 5 (NP) 2743.4 0.000000e+00 1493/1497 (99%) EPI1019767 A/T_Dk/NL-Monnickendam/16013865-006-008/2016 (A/H5N8) segment 5 (NP) 2743.4 0.000000e+00 1493/1497 (99%) EPI1019751 A/Sea_eagle/NL-Assen/16015398-002/2016 (A/H5N8) segment 5 (NP) 2743.4 0.000000e+00 1493/1497 (99%) EPI1019743 A/P_falcon/NL-Vrouwenpolder (Zeeland)/16015510-001/2016 (A/H5N8) segment 5 (NP) 2743.4 0.000000e+00 1493/1497 (99%) EPI1019695 A/Gull10/NL-Marker Wadden/16014466-014/2016 (A/H5N8) segment 5 (NP) 2743.4 0.000000e+00 1493/1497 (99%) EPI1019687 A/Gull1/NL-Marker Wadden/16014466-011/2016 (A/H5N8) segment 5 (NP) 2743.4 0.000000e+00 1493/1497 (99%) EPI1019679 A/Gull/NL-Marker Wadden/16014466-020/2016 (A/H5N8) segment 5 (NP) 2743.4 0.000000e+00 1493/1497 (99%) EPI1019663 A/Gr_bk_bd_gull/NL-Slootdorp/16014102-005/2016 (A/H5N8) segment 5 (NP) 2743.4 0.000000e+00 1493/1497 (99%) EPI1019655 A/Go/NL-Roggebotsluis/16014462-010/2016 (A/H5N8) segment 5 (NP) 2743.4 0.000000e+00 1493/1497 (99%) EPI1019647 A/G_c_grebe/NL-Monnickendam/16013865-009-010/2016 (A/H5N8) segment 5 (NP) 2743.4 0.000000e+00 1493/1497 (99%) EPI1019479 A/Dk/NL-Rotterdam/16014008-001-005/2016 (A/H5N8) segment 5 (NP) 2743.4 0.000000e+00 1493/1497 (99%) EPI1019407 A/Ch/NL-Den Oever/16014231-001/2016 (A/H5N8) segment 5 (NP) 2743.4 0.000000e+00 1493/1497 (99%) EPI1019383 A/C_Gull/NL-Slootdorp/16014102-003/2016 (A/H5N8) segment 5 (NP) 2743.4 0.000000e+00 1493/1497 (99%) EPI1019367 A/Bl_H_gull/NL-Slootdorp/16014102-002/2016 (A/H5N8) segment 5 (NP) 2743.4 0.000000e+00 1493/1497 (99%) EPI1019839 A/T_Dk/NL-Zeewolde/16013976-005/2016 (A/H5N8) segment 5 (NP) 2737.9 0.000000e+00 1492/1497 (99%) EPI1019831 A/T_Dk/NL-Zeewolde/16013976-004-006/2016 (A/H5N8) segment 5 (NP) 2737.9 0.000000e+00 1492/1497 (99%) EPI1019799 A/T_Dk/NL-Werkendam/16014159-003/2016 (A/H5N8) segment 5 (NP) 2737.9 0.000000e+00 1492/1497 (99%) EPI1019735 A/Mal/NL-Mastenbroek/16015378-002/2016 (A/H5N8) segment 5 (NP) 2737.9 0.000000e+00 1492/1497 (99%) EPI1019719 A/Magpie/NL-Volendam/16014331-002/2016 (A/H5N8) segment 5 (NP) 2737.9 0.000000e+00 1492/1497 (99%) EPI1019703 A/L-bl-ba-gull/NL-Sovon/16014324-014/2016 (A/H5N8) segment 5 (NP) 2737.9 0.000000e+00 1492/1497 (99%) EPI1019623 A/Eur_Wig/NL-Wormer/16016143-002/2016 (A/H5N8) segment 5 (NP) 2737.9 0.000000e+00 1492/1497 (99%) EPI1019607 A/Eur_Wig/NL-Walterswald/16015923-003/2016 (A/H5N8) segment 5 (NP) 2737.9 0.000000e+00 1492/1497 (99%) EPI1019559 A/Eur_Wig/NL-Groningen/16015376-003/2016 (A/H5N8) segment 5 (NP) 2737.9 0.000000e+00 1492/1497 (99%) EPI1019527 A/Eur_Wig/NL-Enumatil-Groningen/16015704-001/2016 (A/H5N8) segment 5 (NP) 2737.9 0.000000e+00 1492/1497 (99%) EPI1019375 A/Buzzard/NL-Durgerdam/16015100-004/2016 (A/H5N8) segment 5 (NP) 2737.9 0.000000e+00 1492/1497 (99%) EPI954776 A/Common_tern/Hungary/8187/2017 (A/H5N8) segment 5 (NP) 2737.9 0.000000e+00 1492/1497 (99%) EPI906264 A/chicken/Germany-MV/R8790/2016 (A/H5N8) segment 5 (NP) 2737.9 0.000000e+00 1492/1497 (99%) EPI860394 A/tufted_duck/Germany/AR8444-L01987/2016 (A/H5N8) segment 5 (NP) 2737.9 0.000000e+00 1492/1497 (99%) EPI861394 A/turkey/Germany-SH/R8595/2016 (A/H5N8) segment 5 (NP) 2734.2 0.000000e+00 1491/1497 (99%) EPI1019863 A/T_Dk/NL-Zuidoost Beemster/16014148-009/2016 (A/H5N8) segment 5 (NP) 2732.3 0.000000e+00 1491/1497 (99%) EPI1019855 A/T_Dk/NL-Zuidoost Beemster/16014148-002/2016 (A/H5N8) segment 5 (NP) 2732.3 0.000000e+00 1491/1497 (99%) EPI1019847 A/T_Dk/NL-Zeewolde/16013976-006/2016 (A/H5N8) segment 5 (NP) 2732.3 0.000000e+00 1491/1497 (99%) EPI1019759 A/T_Dk/NL-Almeerder Zand/16014341-003/2016 (A/H5N8) segment 5 (NP) 2732.3 0.000000e+00 1491/1497 (99%) EPI1019711 A/M_Swan/NL-Roggebotsluis/16014462-019/2016 (A/H5N8) segment 5 (NP) 2732.3 0.000000e+00 1491/1497 (99%) EPI1019567 A/Eur_Wig/NL-Leeuwarden/16015699-002/2016 (A/H5N8) segment 5 (NP) 2732.3 0.000000e+00 1491/1497 (99%) EPI1019463 A/Dk/NL-Biddinghuizen/16015145-021-025/2016 (A/H5N8) segment 5 (NP) 2732.3 0.000000e+00 1491/1497 (99%) EPI1019455 A/Dk/NL-Biddinghuizen/16015083-016-020/2016 (A/H5N8) segment 5 (NP) 2732.3 0.000000e+00 1491/1497 (99%) EPI1019447 A/Dk/NL-Biddinghuizen/16014829-011-015/2016 (A/H5N8) segment 5 (NP) 2732.3 0.000000e+00 1491/1497 (99%) EPI1019439 A/Crow/NL-Oostwoud/16015372-004/2016 (A/H5N8) segment 5 (NP) 2732.3 0.000000e+00 1491/1497 (99%) EPI1019359 A/Bk_swan/NL-Den Oever/16013973-002/2016 (A/H5N8) segment 5 (NP) 2732.3 0.000000e+00 1491/1497 (99%) EPI990779 A/mute swan/Germany-NI/AR1529-L02145/2017 (A/H5N8) segment 5 (NP) 2732.3 0.000000e+00 1491/1497 (99%) EPI988592 A/turkey/Germany-NI/R9807/2016 (A/H5N8) segment 5 (NP) 2732.3 0.000000e+00 1491/1497 (99%) EPI909365 A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 5 (NP) 2732.3 0.000000e+00 1491/1497 (99%) EPI906263 A/chicken/Germany-SH/R8758/2016 (A/H5N8) segment 5 (NP) 2732.3 0.000000e+00 1491/1497 (99%) EPI888670 A/domestic duck/Germany-MV/R9869/2016 (A/H5N8) segment 5 (NP) 2732.3 0.000000e+00 1491/1497 (99%) EPI860402 A/tufted_duck/Germany/AR8459-L01988/2016 (A/H5N8) segment 5 (NP) 2732.3 0.000000e+00 1491/1497 (99%) EPI859656 A/tufted_duck/Germany/AR8444-L01986/2016 (A/H5N8) segment 5 (NP) 2732.3 0.000000e+00 1491/1497 (99%) EPI1019871 A/Teal/NL-Ferwert/16015273-013/2016 (A/H5N8) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI1019823 A/T_Dk/NL-Zeewolde/16013976-004/2016 (A/H5N8) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI1019815 A/T_Dk/NL-Zeewolde/16013976-001-003/2016 (A/H5N8) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI1019807 A/T_Dk/NL-Zeewolde/16013976-001/2016 (A/H5N8) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI1019591 A/Eur_Wig/NL-Terschelling/16015692-010/2016 (A/H5N8) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI1019415 A/Ch/NL-Hiaure/16016112-001-005/2016 (A/H5N8) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI961450 A/gadwall/Kurgan/2442/2016 (A/H5N8) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI926626 A/chicken/Germany-MV/R10048/2016 (A/H5N8) segment 5 (NP) 2726.8 0.000000e+00 1489/1497 (99%) EPI909453 A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI909421 A/chicken/Voronezh/20/2017 (A/H5N8) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI909413 A/chicken/Voronezh/19/2017 (A/H5N8) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI909405 A/chicken/Voronezh/18/2017 (A/H5N8) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI909397 A/long-eared owl/Voronezh/16/2017 (A/H5N8) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI909389 A/Ural owl/Voronezh/14/2017 (A/H5N8) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI909381 A/long-eared owl/Voronezh/15/2017 (A/H5N8) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI888089 A/wigeon/Italy/17VIR57-3/2017 (A/H5N8) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI1040234 A/chicken/Italy/17VIR3078/2017 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI1019535 A/Eur_Wig/NL-Ferwert/16015273-002/2016 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI988588 A/domestic duck/Germany-MV/R9764/2016 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI969255 A/Tufted Duck/Switzerland/V237/2016 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI954752 A/Peregrine_falcon/Hungary/4882/2017 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI954600 A/turkey/Italy/17VIR1452-22/2017 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI954568 A/turkey/Italy/17VIR576-11/2017 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI909461 A/chicken/Kalmykia/2643/2016 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI909437 A/goose/Krasnodar/3144/2017 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI1127539 A/mute swan/Shimane/3211A001/2017 (A/H5N6) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI1081970 A/goose/Italy/17VIR6358-3/2017 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI1081922 A/swan/Italy/17VIR7064-1/2017 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI1019615 A/Eur_Wig/NL-West Graftdijk/16015746-003/2016 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI1019599 A/Eur_Wig/NL-Vianen/16015917-006/2016 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI1019543 A/Eur_Wig/NL-Gouda/16015824-001/2016 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI1019511 A/Eur_Wig/NL-De Waal (Texel)/16014891-004/2016 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI1019503 A/Eur_Wig/NL-De Waal (Texel)/16014891-003/2016 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI1019495 A/Eur_Wig/NL-Akkrum/16015817-003/2016 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI1019487 A/Dk/NL-Stolwijk/16016291-016-020/2016 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI1019471 A/Dk/NL-Kamperveen/16016104-001-005/2016 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI954870 A/Mallard/Hungary/1574a/2017 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI954854 A/Mallard/Hungary/1574b/2017 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI954806 A/Greylag_goose/Hungary/320/2017 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI954656 A/Goose/Hungary/1030/2017 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI942936 A/turkey/England/003778/2017 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI868849 A/turkey/England/052131/2016 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI933139 A/chicken/Germany-NI/R11406/2016 (A/H5N8) segment 5 (NP) 2712.0 0.000000e+00 1487/1497 (99%) EPI1045609 A/chicken/Rostov/44/2017 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI1019727 A/Mal/NL-IJsselmuiden/16015448-002/2016 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI1019671 A/Grey_Go/NL-Groot-Ammers/16015901-012/2016 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%)
niman Posted December 31, 2017 Author Report Posted December 31, 2017 Descriptions Align Segment-ID Name Score E-Value Identity EPI1122897 A/chicken/Greece/39_2017b/2017 (A/H5N6) segment 8 (NS) 1554.2 0.000000e+00 841/841 (100%) EPI1122889 A/chicken/Greece/39_2017a/2017 (A/H5N6) segment 8 (NS) 1554.2 0.000000e+00 841/841 (100%) EPI1122881 A/chicken/Greece/39_2017/2017 (A/H5N6) segment 8 (NS) 1554.2 0.000000e+00 841/841 (100%) EPI1019848 A/T_Dk/NL-Zeewolde/16013976-006/2016 (A/H5N8) segment 8 (NS) 1548.6 0.000000e+00 840/841 (99%) EPI1019824 A/T_Dk/NL-Zeewolde/16013976-004/2016 (A/H5N8) segment 8 (NS) 1548.6 0.000000e+00 840/841 (99%) EPI1019816 A/T_Dk/NL-Zeewolde/16013976-001-003/2016 (A/H5N8) segment 8 (NS) 1548.6 0.000000e+00 840/841 (99%) EPI1019808 A/T_Dk/NL-Zeewolde/16013976-001/2016 (A/H5N8) segment 8 (NS) 1548.6 0.000000e+00 840/841 (99%) EPI1019760 A/T_Dk/NL-Almeerder Zand/16014341-003/2016 (A/H5N8) segment 8 (NS) 1548.6 0.000000e+00 840/841 (99%) EPI1019712 A/M_Swan/NL-Roggebotsluis/16014462-019/2016 (A/H5N8) segment 8 (NS) 1548.6 0.000000e+00 840/841 (99%) EPI969258 A/Tufted Duck/Switzerland/V237/2016 (A/H5N8) segment 8 (NS) 1548.6 0.000000e+00 840/841 (99%) EPI1117257 A/T_Dk/NL-Werkendam/16014159-001/2016 (A/H5N5) segment 8 (NS) 1543.1 0.000000e+00 839/841 (99%) EPI1019872 A/Teal/NL-Ferwert/16015273-013/2016 (A/H5N8) segment 8 (NS) 1543.1 0.000000e+00 839/841 (99%) EPI1019856 A/T_Dk/NL-Zuidoost Beemster/16014148-002/2016 (A/H5N8) segment 8 (NS) 1543.1 0.000000e+00 839/841 (99%) EPI1019840 A/T_Dk/NL-Zeewolde/16013976-005/2016 (A/H5N8) segment 8 (NS) 1543.1 0.000000e+00 839/841 (99%) EPI1019832 A/T_Dk/NL-Zeewolde/16013976-004-006/2016 (A/H5N8) segment 8 (NS) 1543.1 0.000000e+00 839/841 (99%) EPI1019800 A/T_Dk/NL-Werkendam/16014159-003/2016 (A/H5N8) segment 8 (NS) 1543.1 0.000000e+00 839/841 (99%) EPI1019792 A/T_Dk/NL-Werkendam/16014159-002/2016 (A/H5N8) segment 8 (NS) 1543.1 0.000000e+00 839/841 (99%) EPI1019784 A/T_Dk/NL-Rotterdam/16014155-001/2016 (A/H5N8) segment 8 (NS) 1543.1 0.000000e+00 839/841 (99%) EPI1019776 A/T_Dk/NL-Roggebotsluis/16014462-015/2016 (A/H5N8) segment 8 (NS) 1543.1 0.000000e+00 839/841 (99%) EPI1019768 A/T_Dk/NL-Monnickendam/16013865-006-008/2016 (A/H5N8) segment 8 (NS) 1543.1 0.000000e+00 839/841 (99%) EPI1019752 A/Sea_eagle/NL-Assen/16015398-002/2016 (A/H5N8) segment 8 (NS) 1543.1 0.000000e+00 839/841 (99%) EPI1019688 A/Gull1/NL-Marker Wadden/16014466-011/2016 (A/H5N8) segment 8 (NS) 1543.1 0.000000e+00 839/841 (99%) EPI1019680 A/Gull/NL-Marker Wadden/16014466-020/2016 (A/H5N8) segment 8 (NS) 1543.1 0.000000e+00 839/841 (99%) EPI1019664 A/Gr_bk_bd_gull/NL-Slootdorp/16014102-005/2016 (A/H5N8) segment 8 (NS) 1543.1 0.000000e+00 839/841 (99%) EPI1019656 A/Go/NL-Roggebotsluis/16014462-010/2016 (A/H5N8) segment 8 (NS) 1543.1 0.000000e+00 839/841 (99%) EPI1019592 A/Eur_Wig/NL-Terschelling/16015692-010/2016 (A/H5N8) segment 8 (NS) 1543.1 0.000000e+00 839/841 (99%) EPI1019560 A/Eur_Wig/NL-Groningen/16015376-003/2016 (A/H5N8) segment 8 (NS) 1543.1 0.000000e+00 839/841 (99%) EPI1019536 A/Eur_Wig/NL-Ferwert/16015273-002/2016 (A/H5N8) segment 8 (NS) 1543.1 0.000000e+00 839/841 (99%) EPI1019496 A/Eur_Wig/NL-Akkrum/16015817-003/2016 (A/H5N8) segment 8 (NS) 1543.1 0.000000e+00 839/841 (99%) EPI1019480 A/Dk/NL-Rotterdam/16014008-001-005/2016 (A/H5N8) segment 8 (NS) 1543.1 0.000000e+00 839/841 (99%) EPI1019464 A/Dk/NL-Biddinghuizen/16015145-021-025/2016 (A/H5N8) segment 8 (NS) 1543.1 0.000000e+00 839/841 (99%) EPI1019456 A/Dk/NL-Biddinghuizen/16015083-016-020/2016 (A/H5N8) segment 8 (NS) 1543.1 0.000000e+00 839/841 (99%) EPI1019448 A/Dk/NL-Biddinghuizen/16014829-011-015/2016 (A/H5N8) segment 8 (NS) 1543.1 0.000000e+00 839/841 (99%) EPI1019416 A/Ch/NL-Hiaure/16016112-001-005/2016 (A/H5N8) segment 8 (NS) 1543.1 0.000000e+00 839/841 (99%) EPI1019368 A/Bl_H_gull/NL-Slootdorp/16014102-002/2016 (A/H5N8) segment 8 (NS) 1543.1 0.000000e+00 839/841 (99%) EPI967671 A/domestic duck/Germany-MV/R9764/2016 (A/H5N8) segment 8 (NS) 1543.1 0.000000e+00 839/841 (99%) EPI967140 A/turkey/Germany-NI/R9807/2016 (A/H5N8) segment 8 (NS) 1543.1 0.000000e+00 839/841 (99%) EPI954777 A/Common_tern/Hungary/8187/2017 (A/H5N8) segment 8 (NS) 1543.1 0.000000e+00 839/841 (99%) EPI916717 A/turkey/Germany-SH/R8595/2016 (A/H5N8) segment 8 (NS) 1543.1 0.000000e+00 839/841 (99%) EPI909368 A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 8 (NS) 1543.1 0.000000e+00 839/841 (99%) EPI881283 A/chicken/Germany-MV/R8790/2016 (A/H5N8) segment 8 (NS) 1543.1 0.000000e+00 839/841 (99%) EPI860499 A/tufted duck/Germany-SH/R8444/2016 (A/H5N8) segment 8 (NS) 1543.1 0.000000e+00 839/841 (99%) EPI860405 A/tufted_duck/Germany/AR8459-L01988/2016 (A/H5N8) segment 8 (NS) 1543.1 0.000000e+00 839/841 (99%) EPI860397 A/tufted_duck/Germany/AR8444-L01987/2016 (A/H5N8) segment 8 (NS) 1543.1 0.000000e+00 839/841 (99%) EPI859657 A/tufted_duck/Germany/AR8444-L01986/2016 (A/H5N8) segment 8 (NS) 1543.1 0.000000e+00 839/841 (99%) EPI1081973 A/goose/Italy/17VIR6358-3/2017 (A/H5N8) segment 8 (NS) 1539.4 0.000000e+00 837/839 (99%) EPI1081921 A/swan/Italy/17VIR7064-1/2017 (A/H5N8) segment 8 (NS) 1539.4 0.000000e+00 837/839 (99%) EPI1081891 A/chicken/Czech Republic/55-17_1/2017 (H5N8) (A/H5N8) segment 8 (NS) 1539.4 0.000000e+00 837/839 (99%) EPI1032556 A/Mulard_duck/Hungary/59163/2016 (A/H5N8) segment 8 (NS) 1539.4 0.000000e+00 837/839 (99%) EPI1032542 A/Goose/Hungary/64909/2016 (A/H5N8) segment 8 (NS) 1539.4 0.000000e+00 837/839 (99%) EPI1032534 A/Goose/Hungary/63743/2016 (A/H5N8) segment 8 (NS) 1539.4 0.000000e+00 837/839 (99%) EPI1032526 A/Mulard_duck/Hungary/62902/2016 (A/H5N8) segment 8 (NS) 1539.4 0.000000e+00 837/839 (99%) EPI1032518 A/Mulard_duck/Hungary/60369/2016 (A/H5N8) segment 8 (NS) 1539.4 0.000000e+00 837/839 (99%) EPI1032510 A/Goose/Hungary/59763/2016 (A/H5N8) segment 8 (NS) 1539.4 0.000000e+00 837/839 (99%) EPI1032502 A/Goose/Hungary/17985/2017 (A/H5N8) segment 8 (NS) 1539.4 0.000000e+00 837/839 (99%) EPI1032494 A/Goose/Hungary/17580/2017 (A/H5N8) segment 8 (NS) 1539.4 0.000000e+00 837/839 (99%) EPI1032486 A/Goose/Hungary/17051/2017 (A/H5N8) segment 8 (NS) 1539.4 0.000000e+00 837/839 (99%) EPI1032470 A/Goose/Hungary/17261/2017 (A/H5N8) segment 8 (NS) 1539.4 0.000000e+00 837/839 (99%) EPI962038 A/Duck/Hungary/54738/2016 (A/H5N8) segment 8 (NS) 1539.4 0.000000e+00 837/839 (99%) EPI959557 A/Rook/Hungary/4975/2017 (A/H5N8) segment 8 (NS) 1539.4 0.000000e+00 837/839 (99%) EPI959533 A/Mute swan/Hungary/6276/2017 (A/H5N8) segment 8 (NS) 1539.4 0.000000e+00 837/839 (99%) EPI956131 A/chicken/Germany-NI/R11406/2016 (A/H5N8) segment 8 (NS) 1539.4 0.000000e+00 837/839 (99%) EPI954863 A/White_fronted_goose/Hungary/801/2017 (A/H5N8) segment 8 (NS) 1539.4 0.000000e+00 837/839 (99%) EPI954831 A/Mute swan/Hungary/3137/2017 (A/H5N8) segment 8 (NS) 1539.4 0.000000e+00 837/839 (99%) EPI954815 A/GuineaFowl/Hungary/596/2017 (A/H5N8) segment 8 (NS) 1539.4 0.000000e+00 837/839 (99%) EPI954721 A/Mute swan/Hungary/3139/2017 (A/H5N8) segment 8 (NS) 1539.4 0.000000e+00 837/839 (99%) EPI954673 A/Greylag_goose/Hungary/1941/2017 (A/H5N8) segment 8 (NS) 1539.4 0.000000e+00 837/839 (99%) EPI954633 A/Harris Hawk/Hungary/120/2017 (A/H5N8) segment 8 (NS) 1539.4 0.000000e+00 837/839 (99%) EPI866975 A/chicken/Hungary/59048/2016 (A/H5N8) segment 8 (NS) 1539.4 0.000000e+00 837/839 (99%) EPI860533 A/duck/Hungary/55191/2016 (A/H5N8) segment 8 (NS) 1539.4 0.000000e+00 837/839 (99%) EPI860520 A/goose/Hungary/55128/2016 (A/H5N8) segment 8 (NS) 1539.4 0.000000e+00 837/839 (99%) EPI860517 A/Mulard_duck/Hungary/54494/2016 (A/H5N8) segment 8 (NS) 1539.4 0.000000e+00 837/839 (99%) EPI1019864 A/T_Dk/NL-Zuidoost Beemster/16014148-009/2016 (A/H5N8) segment 8 (NS) 1537.5 0.000000e+00 838/841 (99%) EPI1019744 A/P_falcon/NL-Vrouwenpolder (Zeeland)/16015510-001/2016 (A/H5N8) segment 8 (NS) 1537.5 0.000000e+00 838/841 (99%) EPI1019736 A/Mal/NL-Mastenbroek/16015378-002/2016 (A/H5N8) segment 8 (NS) 1537.5 0.000000e+00 838/841 (99%) EPI1019720 A/Magpie/NL-Volendam/16014331-002/2016 (A/H5N8) segment 8 (NS) 1537.5 0.000000e+00 838/841 (99%) EPI1019704 A/L-bl-ba-gull/NL-Sovon/16014324-014/2016 (A/H5N8) segment 8 (NS) 1537.5 0.000000e+00 838/841 (99%) EPI1019696 A/Gull10/NL-Marker Wadden/16014466-014/2016 (A/H5N8) segment 8 (NS) 1537.5 0.000000e+00 838/841 (99%) EPI1019648 A/G_c_grebe/NL-Monnickendam/16013865-009-010/2016 (A/H5N8) segment 8 (NS) 1537.5 0.000000e+00 838/841 (99%) EPI1019624 A/Eur_Wig/NL-Wormer/16016143-002/2016 (A/H5N8) segment 8 (NS) 1537.5 0.000000e+00 838/841 (99%) EPI1019568 A/Eur_Wig/NL-Leeuwarden/16015699-002/2016 (A/H5N8) segment 8 (NS) 1537.5 0.000000e+00 838/841 (99%) EPI1019528 A/Eur_Wig/NL-Enumatil-Groningen/16015704-001/2016 (A/H5N8) segment 8 (NS) 1537.5 0.000000e+00 838/841 (99%) EPI1019440 A/Crow/NL-Oostwoud/16015372-004/2016 (A/H5N8) segment 8 (NS) 1537.5 0.000000e+00 838/841 (99%) EPI1019384 A/C_Gull/NL-Slootdorp/16014102-003/2016 (A/H5N8) segment 8 (NS) 1537.5 0.000000e+00 838/841 (99%) EPI1019376 A/Buzzard/NL-Durgerdam/16015100-004/2016 (A/H5N8) segment 8 (NS) 1537.5 0.000000e+00 838/841 (99%) EPI990780 A/mute swan/Germany-NI/AR1529-L02145/2017 (A/H5N8) segment 8 (NS) 1537.5 0.000000e+00 838/841 (99%) EPI954601 A/turkey/Italy/17VIR1452-22/2017 (A/H5N8) segment 8 (NS) 1537.5 0.000000e+00 836/838 (99%) EPI888092 A/wigeon/Italy/17VIR57-3/2017 (A/H5N8) segment 8 (NS) 1537.5 0.000000e+00 836/838 (99%) EPI877539 A/domestic duck/Germany-MV/R9869/2016 (A/H5N8) segment 8 (NS) 1537.5 0.000000e+00 838/841 (99%) EPI863869 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 8 (NS) 1537.5 0.000000e+00 834/835 (99%) EPI1126358 A/mute swan/Czech Republic/1060-17/2017 (H5N8) (A/H5N8) segment 8 (NS) 1533.8 0.000000e+00 836/839 (99%) EPI1093385 A/mute swan/Czech Republic/1058-17/2017 (H5N8) (A/H5N8) segment 8 (NS) 1533.8 0.000000e+00 836/839 (99%) EPI1085346 A/goose/Czech Republic/136-17_1/2017 (H5N8) (A/H5N8) segment 8 (NS) 1533.8 0.000000e+00 836/839 (99%) EPI1081898 A/turkey/Czech Republic/38-17_1/2017 (H5N8) (A/H5N8) segment 8 (NS) 1533.8 0.000000e+00 836/839 (99%) EPI1081886 A/mute swan/Czech Republic/54-17_2/2017 (H5N8) (A/H5N8) segment 8 (NS) 1533.8 0.000000e+00 836/839 (99%) EPI1045979 A/unknown/Tatarstan/94/2017 (A/H5N8) segment 8 (NS) 1533.8 0.000000e+00 836/839 (99%) EPI1045621 A/chicken/Tatarstan/88/2017 (A/H5N8) segment 8 (NS) 1533.8 0.000000e+00 836/839 (99%) EPI1045599 A/chicken/Shchyolkovo/47/2017 (A/H5N8) segment 8 (NS) 1533.8 0.000000e+00 836/839 (99%) EPI1032478 A/Goose/Hungary/15729/2017 (A/H5N8) segment 8 (NS) 1533.8 0.000000e+00 836/839 (99%) EPI1007679 A/peacock/Belgium/1017/2017 (A/H5N8) segment 8 (NS) 1533.8 0.000000e+00 836/839 (99%)
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