niman Posted January 24, 2018 Report Posted January 24, 2018 Animal and Plant Health Agency has released full 2018 and late 2017 wild bird sequences from Dorset, United Kingdom.
niman Posted January 24, 2018 Author Report Posted January 24, 2018 edit Name Isolate ID Subtype Passage PB2 PB1 PA HA NP NA MP NS HE P3 Collection date edit Name Isolate ID Subtype Passage PB2 PB1 PA HA NP NA MP NS HE P3 Collection date A/canada_goose/England/AV58_18OPpoolEP1/2018 EPI_ISL_292225 H5N6 Egg Passage 1 2341 2341 2233 1776 1565 1466 1027 890 --- --- 2018-01-05 A/pochard_duck/England/AVP_18_003254/2018 EPI_ISL_292224 H5N6 Egg Passage 1 2341 2341 2233 1776 1565 1465 1027 890 --- --- 2018-01-10 A/mute_swan/England/AVP_18_001986/2017 EPI_ISL_292223 H5N6 Egg Passage 1 2341 2341 2233 1776 1565 1465 1027 890 --- --- 2017-12-31
niman Posted January 24, 2018 Author Report Posted January 24, 2018 Isolate detail Isolate name: A/canada_goose/England/AV58_18OPpoolEP1/2018 Isolate ID: EPI_ISL_292225 Passage details/history: Egg Passage 1 Type: A / H5N6 Lineage: Sample information Collection date: 2018-01-05 Host Branta canadensis Additional host information: Domestic status: Wild Is vaccinated: N Location: United Kingdom / Dorset Additional location information: Abbotsbury Health status: Dead Specimen source: Oro-pharyngeal swab Strain or commercial product name used for vaccination: Institute information Originating lab: Animal and Plant Health Agency (APHA) Sample ID given by the sample provider: AV-18-003214 and AV-18-003186 Address: Animal and Plant Health Agency (APHA) Virology Department Woodham Lane New Haw, Addlestone, Surrey KT15 3NB United Kingdom Submitting lab: Animal and Plant Health Agency (APHA) Sample ID given by the submitting laboratory: AV58-18 OP pool 5 EP1 Authors: Seekings, James; Ellis, Richard; Brookes, Sharon M; Reid, Scott; Essen, Stephen; Lewis, Nicola; Brown, Ian H Address: Animal and Plant Health Agency (APHA) Virology Department Woodham Lane New Haw, Addlestone, Surrey KT15 3NB United Kingdom Publication Publication In vivo antiviral resistance Phenotype Genotype Unspecified Antiviral resistance tested by experimental procedures Adamantanes: Unknown Oseltamivir: Unknown Zanamivir: Unknown Peramivir: Unknown Other: Unknown Additional information Antigenic characterization: Note: Sequence segment identifier length accession # INSDC Sequence PB2 A/canada_goose/England/AV58_18OPpoolEP1/2018 2341 EPI1144347 PB1 A/canada_goose/England/AV58_18OPpoolEP1/2018 2341 EPI1144348 PA A/canada_goose/England/AV58_18OPpoolEP1/2018 2233 EPI1144349 HA A/canada_goose/England/AV58_18OPpoolEP1/2018 1776 EPI1144350 NP A/canada_goose/England/AV58_18OPpoolEP1/2018 1565 EPI1144351 NA A/canada_goose/England/AV58_18OPpoolEP1/2018 1466 EPI1144352 MP A/canada_goose/England/AV58_18OPpoolEP1/2018 1027 EPI1144353 NS A/canada_goose/England/AV58_18OPpoolEP1/2018 890 EPI1144354 Submitter information Submitter: Seekings, James Submission Date: 2018-01-19 Last modifier: Seekings, James Last modified: 2018-01-23 Address: Animal and Plant Health Agency (APHA) Virology Department Woodham Lane New Haw, Addlestone, Surrey KT15 3NB United Kingdom
niman Posted January 24, 2018 Author Report Posted January 24, 2018 Descriptions Align Segment-ID Name Score E-Value Identity EPI1144350 A/canada_goose/England/AV58_18OPpoolEP1/2018 (A/H5N6) segment 4 (HA) 3147.8 0.000000e+00 1704/1704 (100%) EPI1144334 A/mute_swan/England/AVP_18_001986/2017 (A/H5N6) segment 4 (HA) 3142.3 0.000000e+00 1703/1704 (99%) EPI1123261 A/Tufted Duck/Netherlands/17017367-007/2017 (A/H5N6) segment 4 (HA) 3136.7 0.000000e+00 1702/1704 (99%) EPI1144342 A/pochard_duck/England/AVP_18_003254/2018 (A/H5N6) segment 4 (HA) 3131.2 0.000000e+00 1701/1704 (99%) EPI1119870 A/Duck/Netherlands/17017237-001-005/2017 (A/H5N6) segment 4 (HA) 3131.2 0.000000e+00 1701/1704 (99%) EPI1119862 A/Duck/Netherlands/17017236-001-005/2017 (A/H5N6) segment 4 (HA) 3131.2 0.000000e+00 1701/1704 (99%) EPI1131096 A/Black-headed Gull/Netherlands/29/2017 (A/H5N6) segment 4 (HA) 3125.7 0.000000e+00 1700/1704 (99%) EPI1123245 A/Mute Swan/Netherlands/17017377-001/2017 (A/H5N6) segment 4 (HA) 3125.7 0.000000e+00 1700/1704 (99%) EPI1123237 A/Mute Swan/Netherlands/17017367-012/2017 (A/H5N6) segment 4 (HA) 3125.7 0.000000e+00 1700/1704 (99%) EPI1131088 A/Great Black-backed Gull/Netherlands/1/2017 (A/H5N6) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI1019638 A/Eur_Wig/NL-Zoeterwoude/16015702-010/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI1019590 A/Eur_Wig/NL-Reeuwijk/16015903-003/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI1019582 A/Eur_Wig/NL-Leidschendam/16015697-007/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI1019550 A/Eur_Wig/NL-Gouda/16015824-001/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI1019518 A/Eur_Wig/NL-De Waal (Texel)/16014891-004/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI1019510 A/Eur_Wig/NL-De Waal (Texel)/16014891-003/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI943320 A/pochard_duck/England/SA12_157809/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI1019734 A/Mal/NL-IJsselmuiden/16015448-002/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI1019678 A/Grey_Go/NL-Groot-Ammers/16015901-012/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI1019646 A/Eur_Wig/NL-Zwolle/16015820-002/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI1019622 A/Eur_Wig/NL-West Graftdijk/16015746-003/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI1019606 A/Eur_Wig/NL-Vianen/16015917-006/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI1019430 A/Ch/NL-Rhenen/16016141-006/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI1019406 A/Ch/NL-Boven Leeuwen/16016151-006-010/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI959413 A/Eurasian Wigeon/Netherlands/4/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI942943 A/chicken/Wales/000023/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI1019478 A/Dk/NL-Kamperveen/16016104-001-005/2016 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI1019438 A/Ch/NL-Zoeterwoude/16016484-021-025/2016 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI954583 A/chicken/Italy/17VIR653-12/2017 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI868848 A/turkey/England/052131/2016 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI1019630 A/Eur_Wig/NL-Wormer/16016143-002/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI1019614 A/Eur_Wig/NL-Walterswald/16015923-003/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI1007675 A/peacock/Belgium/1017/2017 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI990770 A/eurasian wigeon/Germany-NI/AR249-L02143/2017 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI954877 A/Mallard/Hungary/1574a/2017 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI954861 A/Mallard/Hungary/1574b/2017 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI954607 A/turkey/Italy/17VIR1452-22/2017 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI954575 A/turkey/Italy/17VIR576-11/2017 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI954559 A/swan/Italy/17VIR537-2/2017 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI869687 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 4 (HA) 3049.9 0.000000e+00 1686/1704 (98%) EPI1045611 A/chicken/Rostov/44/2017 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI1019534 A/Eur_Wig/NL-Enumatil-Groningen/16015704-001/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI1019526 A/Eur_Wig/NL-Drieborg (Dollard)/16015513-001/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI990794 A/greylag goose/Germany-NI/AR1395-L02144/2017 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI969347 A/turkey/Germany-BB/R377ff/2017 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI961449 A/gadwall/Kurgan/2442/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI954813 A/Greylag_goose/Hungary/320/2017 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI942935 A/turkey/England/003778/2017 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI909452 A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI909444 A/mute swan/Krasnodar/25/2017 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI869931 A/turkey/Poland/83/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI869930 A/turkey/Poland/78/2016 (A/H5N8) segment 4 (HA) 3044.4 0.000000e+00 1685/1704 (98%) EPI1019718 A/M_Swan/NL-Roggebotsluis/16014462-019/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI1019558 A/Eur_Wig/NL-Greonterp/16015653-001/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI1019494 A/Dk/NL-Stolwijk/16016291-016-020/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI1019398 A/Ch/NL-Abbega/X16015736/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI1007667 A/chicken/Belgium/807/2017 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI990802 A/greylag goose/Germany-NI/AR703-L02138/2017 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI931145 A/duck/Czech Republic/1467-17/2017 (H5N8) (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI916604 A/bronze turkey/Czech Republic/1414-17/2017 (H5N8) (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI909436 A/goose/Krasnodar/3144/2017 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI859650 A/wild duck/Germany-BW/R8455/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI907346 A/domestic duck/Germany-BB/R681ff/2017 (A/H5N8) segment 4 (HA) 3038.9 0.000000e+00 1683/1702 (98%) EPI1021106 A/mute swan/Czech Republic/1296-17_1/2017 (H5N8) (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI1019766 A/T_Dk/NL-Almeerder Zand/16014341-003/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI969254 A/Tufted Duck/Switzerland/V237/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI931207 A/turkey/Germany-BB/R234ff/2017 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI909428 A/turkey/Rostov/11/2017 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI909404 A/chicken/Voronezh/18/2017 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI909396 A/long-eared owl/Voronezh/16/2017 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI909388 A/Ural owl/Voronezh/14/2017 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI909380 A/long-eared owl/Voronezh/15/2017 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI888088 A/wigeon/Italy/17VIR57-3/2017 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI869940 A/herring gull/Poland/84/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI869936 A/chicken/Kalmykia/2661/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI861011 A/turkey/Germany-SH/R8595/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI860401 A/tufted_duck/Germany/AR8459-L01988/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI859653 A/tufted_duck/Germany/AR8444-L01986/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI859212 A/tufted_duck/Germany-SH/R8446/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI1040223 A/chicken/Italy/17VIR3078/2017 (A/H5N8) segment 4 (HA) 3033.3 0.000000e+00 1683/1704 (98%) EPI909364 A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 4 (HA) 3033.3 0.000000e+00 1683/1704 (98%) EPI1061371 A/chicken/Belgium/5990/2017 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI1019878 A/Teal/NL-Ferwert/16015273-013/2016 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI1019870 A/T_Dk/NL-Zuidoost Beemster/16014148-009/2016 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI1019862 A/T_Dk/NL-Zuidoost Beemster/16014148-002/2016 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI1019790 A/T_Dk/NL-Rotterdam/16014155-001/2016 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI1019782 A/T_Dk/NL-Roggebotsluis/16014462-015/2016 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI1019774 A/T_Dk/NL-Monnickendam/16013865-006-008/2016 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI1019758 A/Sea_eagle/NL-Assen/16015398-002/2016 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI1019750 A/P_falcon/NL-Vrouwenpolder (Zeeland)/16015510-001/2016 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI1019726 A/Magpie/NL-Volendam/16014331-002/2016 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI1019710 A/L-bl-ba-gull/NL-Sovon/16014324-014/2016 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI1019702 A/Gull10/NL-Marker Wadden/16014466-014/2016 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI1019670 A/Gr_bk_bd_gull/NL-Slootdorp/16014102-005/2016 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI1019542 A/Eur_Wig/NL-Ferwert/16015273-002/2016 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI1019446 A/Crow/NL-Oostwoud/16015372-004/2016 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI1019382 A/Buzzard/NL-Durgerdam/16015100-004/2016 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI954783 A/Common_tern/Hungary/8187/2017 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI954671 A/Duck/Hungary/1588/2017 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI922508 A/chicken/Germany-NI/R11406/2016 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%)
niman Posted January 24, 2018 Author Report Posted January 24, 2018 Descriptions Align Segment-ID Name Score E-Value Identity EPI1144352 A/canada_goose/England/AV58_18OPpoolEP1/2018 (A/H5N6) segment 6 (NA) 2603.0 0.000000e+00 1409/1409 (100%) EPI1123260 A/Tufted Duck/Netherlands/17017367-007/2017 (A/H5N6) segment 6 (NA) 2603.0 0.000000e+00 1409/1409 (100%) EPI1123244 A/Mute Swan/Netherlands/17017377-001/2017 (A/H5N6) segment 6 (NA) 2597.5 0.000000e+00 1408/1409 (99%) EPI1123236 A/Mute Swan/Netherlands/17017367-012/2017 (A/H5N6) segment 6 (NA) 2597.5 0.000000e+00 1408/1409 (99%) EPI1119872 A/Duck/Netherlands/17017237-001-005/2017 (A/H5N6) segment 6 (NA) 2597.5 0.000000e+00 1408/1409 (99%) EPI1119864 A/Duck/Netherlands/17017236-001-005/2017 (A/H5N6) segment 6 (NA) 2597.5 0.000000e+00 1408/1409 (99%) EPI1144344 A/pochard_duck/England/AVP_18_003254/2018 (A/H5N6) segment 6 (NA) 2592.0 0.000000e+00 1407/1409 (99%) EPI1144336 A/mute_swan/England/AVP_18_001986/2017 (A/H5N6) segment 6 (NA) 2592.0 0.000000e+00 1407/1409 (99%) EPI1131098 A/Black-headed Gull/Netherlands/29/2017 (A/H5N6) segment 6 (NA) 2571.7 0.000000e+00 1392/1392 (100%) EPI1131090 A/Great Black-backed Gull/Netherlands/1/2017 (A/H5N6) segment 6 (NA) 2562.4 0.000000e+00 1397/1402 (99%) EPI1129918 A/Black-headed Gull/Netherlands/29/2017 (A/H5N6) segment 6 (NA) 2473.8 0.000000e+00 1339/1339 (100%) EPI1122895 A/chicken/Greece/39_2017b/2017 (A/H5N6) segment 6 (NA) 2453.5 0.000000e+00 1382/1409 (98%) EPI1122887 A/chicken/Greece/39_2017a/2017 (A/H5N6) segment 6 (NA) 2449.8 0.000000e+00 1381/1409 (98%) EPI1122879 A/chicken/Greece/39_2017/2017 (A/H5N6) segment 6 (NA) 2449.8 0.000000e+00 1381/1409 (98%) EPI1129917 A/Great Black-backed Gull/Netherlands/1/2017 (A/H5N6) segment 6 (NA) 2414.7 0.000000e+00 1317/1322 (99%) EPI1119073 A/spoonbill/Taiwan/DB645/2017 (A/H5N6) segment 6 (NA) 2409.2 0.000000e+00 1372/1406 (97%) EPI1127540 A/mute swan/Shimane/3211A001/2017 (A/H5N6) segment 6 (NA) 2403.6 0.000000e+00 1373/1409 (97%) EPI1011098 A/barnacle goose/Netherlands/2/2014 (A/H3N6) segment 6 (NA) 2392.5 0.000000e+00 1373/1411 (97%) EPI1036189 A/duck/Moscow/4652/2011 (A/H4N6) segment 6 (NA) 2311.3 0.000000e+00 1358/1411 (96%) EPI890326 A/mallard duck/Netherlands/19/2012 (A/H4N6) segment 6 (NA) 2292.8 0.000000e+00 1355/1411 (96%) EPI1036196 A/duck/Moscow/4781/2012 (A/H4N6) segment 6 (NA) 2287.3 0.000000e+00 1354/1411 (95%) EPI1145199 A/teal/Croatia/86-25/2012 (A/H4N6) segment 6 (NA) 2281.7 0.000000e+00 1353/1411 (95%) EPI891032 A/mallard duck/Netherlands/30/2014 (A/H4N6) segment 6 (NA) 2231.9 0.000000e+00 1345/1412 (95%) EPI1133993 A/duck/Mongolia/262/2011 (A/H4N6) segment 6 (NA) 2226.3 0.000000e+00 1345/1413 (95%) EPI823917 A/teal/Chany Lake/106_ cloaca/2012 (A/H4N6) segment 6 (NA) 2226.3 0.000000e+00 1345/1413 (95%) EPI823909 A/teal/Chany Lake/104_ feather/2012 (A/H4N6) segment 6 (NA) 2226.3 0.000000e+00 1345/1413 (95%) EPI823901 A/teal/Chany Lake/104_cloaca/2012 (A/H4N6) segment 6 (NA) 2226.3 0.000000e+00 1345/1413 (95%) EPI823790 A/shoveller/Chany Lake/101/2012 (A/H4N6) segment 6 (NA) 2226.3 0.000000e+00 1345/1413 (95%) EPI470232 A/duck/Yunnan/87/2007 (A/H7N6) segment 6 (NA) 2226.3 0.000000e+00 1344/1412 (95%) EPI692466 A/duck/Henan/S1091/2010 (A/H4N6) segment 6 (NA) 2220.8 0.000000e+00 1343/1412 (95%) EPI533781 A/Caspian seal/Russia/T1/2012 (A/H4N6) segment 6 (NA) 2220.8 0.000000e+00 1343/1412 (95%) EPI533775 A/Caspian seal/Russia/1884/2002 (A/H4N6) segment 6 (NA) 2220.8 0.000000e+00 1343/1412 (95%) EPI485322 A/eurasian wigeon/Mongolia/340V/2009 (A/H4N6) segment 6 (NA) 2220.8 0.000000e+00 1343/1412 (95%) EPI692506 A/duck/Hunan/S1012/2009 (A/H4N6) segment 6 (NA) 2209.7 0.000000e+00 1341/1412 (94%) EPI1014700 A/mallard duck/Netherlands/7/2006 (A/H10N6) segment 6 (NA) 2204.2 0.000000e+00 1340/1412 (94%) EPI692346 A/chicken/Hunan/S1267/2010 (A/H4N6) segment 6 (NA) 2204.2 0.000000e+00 1340/1412 (94%) EPI692338 A/chicken/Hunan/S1248/2010 (A/H4N6) segment 6 (NA) 2204.2 0.000000e+00 1340/1412 (94%) EPI414148 A/duck/Jiangsu/4/2010 (A/H3N6) segment 6 (NA) 2204.2 0.000000e+00 1340/1412 (94%) EPI407862 A/Khaki Campbell duck/Karachi/NARC-23963/2010 (A/H4N6) segment 6 (NA) 2200.5 0.000000e+00 1339/1412 (94%) EPI372354 A/teal/Egypt/09888-NAMRU3/2005 (A/H4N6) segment 6 (NA) 2200.5 0.000000e+00 1340/1412 (94%) EPI1013418 A/mallard duck/Netherlands/8/2006 (A/H10N6) segment 6 (NA) 2198.6 0.000000e+00 1339/1412 (94%) EPI395392 A/chicken/India/WB-NIV101006/2009 (A/H4N6) segment 6 (NA) 2198.6 0.000000e+00 1339/1412 (94%) EPI296530 A/mallard/Netherlands/4/2006 (A/H10N6) segment 6 (NA) 2198.6 0.000000e+00 1339/1412 (94%) EPI890683 A/mallard duck/Netherlands/6/2006 (A/H4N6) segment 6 (NA) 2193.1 0.000000e+00 1338/1412 (94%) EPI243479 A/duck/Vietnam/OIE-2454/2009 (A/H4N6) segment 6 (NA) 2193.1 0.000000e+00 1339/1413 (94%) EPI401303 A/duck/Korea/DY104/2007 (A/H4N6) segment 6 (NA) 2187.6 0.000000e+00 1337/1412 (94%) EPI168523 A/common pochard/Aktau/1455/2006 (A/H4N6) segment 6 (NA) 2182.0 0.000000e+00 1337/1413 (94%) EPI168522 A/coot/Aktau/1454/2006 (A/H4N6) segment 6 (NA) 2176.5 0.000000e+00 1337/1414 (94%) EPI513237 A/mallard/Sweden/104925/2009 (A/H4N6) segment 6 (NA) 2170.9 0.000000e+00 1335/1413 (94%) EPI704432 A/duck/Mongolia/769/2015 (A/H4N6) segment 6 (NA) 2165.4 0.000000e+00 1336/1415 (94%) EPI540366 A/duck/Bangladesh/1521/2009 (A/H4N6) segment 6 (NA) 2165.4 0.000000e+00 1334/1413 (94%) EPI513749 A/mallard/Sweden/79978/2008 (A/H4N6) segment 6 (NA) 2159.9 0.000000e+00 1332/1412 (94%) EPI395393 A/chicken/India/WB-NIV101018/2009 (A/H4N6) segment 6 (NA) 2154.3 0.000000e+00 1332/1413 (94%) EPI513568 A/mallard/Sweden/80348/2008 (A/H0) segment 6 (NA) 2148.8 0.000000e+00 1331/1413 (94%) EPI485357 A/ruddy shelduck/Mongolia/592/2010 (A/H8N6) segment 6 (NA) 2148.8 0.000000e+00 1331/1413 (94%) EPI284397 A/mallard/Czech Republic/12652/2007 (A/H4N6) segment 6 (NA) 2148.8 0.000000e+00 1328/1409 (94%) EPI704293 A/duck/Mongolia/127/2015 (A/H4N6) segment 6 (NA) 2143.2 0.000000e+00 1332/1415 (94%) EPI704269 A/duck/Mongolia/101/2015 (A/H4N6) segment 6 (NA) 2143.2 0.000000e+00 1332/1415 (94%) EPI540374 A/duck/Bangladesh/1283/2008 (A/H4N6) segment 6 (NA) 2143.2 0.000000e+00 1331/1414 (94%) EPI1013677 A/mallard duck/Netherlands/10/2013 (A/H4N6) segment 6 (NA) 2137.7 0.000000e+00 1329/1413 (94%) EPI1011235 A/mallard duck/Netherlands/22/2011 (A/H4N6) segment 6 (NA) 2137.7 0.000000e+00 1329/1413 (94%) EPI889824 A/mallard duck/Netherlands/27/2009 (A/H4N6) segment 6 (NA) 2137.7 0.000000e+00 1329/1413 (94%) EPI540358 A/duck/Bangladesh/1766/2010 (A/H4N6) segment 6 (NA) 2137.7 0.000000e+00 1328/1412 (94%) EPI513170 A/mallard/Sweden/105012/2009 (A/H4N6) segment 6 (NA) 2137.7 0.000000e+00 1329/1413 (94%) EPI965451 A/duck/Bangladesh/26974/2015 (A/H3N6) segment 6 (NA) 2132.2 0.000000e+00 1331/1416 (93%) EPI618783 A/mallard/Sweden/93475/2009 (A/H10N6) segment 6 (NA) 2132.2 0.000000e+00 1329/1414 (93%) EPI513546 A/mallard/Sweden/101010/2009 (A/H4N6) segment 6 (NA) 2132.2 0.000000e+00 1328/1413 (93%) EPI513461 A/mallard/Sweden/101632/2009 (A/H4N6) segment 6 (NA) 2132.2 0.000000e+00 1328/1413 (93%) EPI513454 A/mallard/Sweden/101603/2009 (A/H4N6) segment 6 (NA) 2132.2 0.000000e+00 1328/1413 (93%) EPI513433 A/mallard/Sweden/101564/2009 (A/H4N6) segment 6 (NA) 2132.2 0.000000e+00 1328/1413 (93%) EPI513431 A/mallard/Sweden/101785/2009 (A/H4N6) segment 6 (NA) 2132.2 0.000000e+00 1328/1413 (93%) EPI513415 A/mallard/Sweden/101733/2009 (A/H4N6) segment 6 (NA) 2132.2 0.000000e+00 1328/1413 (93%) EPI513408 A/mallard/Sweden/101663/2009 (A/H4N6) segment 6 (NA) 2132.2 0.000000e+00 1328/1413 (93%) EPI513394 A/mallard/Sweden/101654/2009 (A/H4N6) segment 6 (NA) 2132.2 0.000000e+00 1328/1413 (93%) EPI513358 A/mallard/Sweden/101831/2009 (A/H4N6) segment 6 (NA) 2132.2 0.000000e+00 1328/1413 (93%) EPI513341 A/mallard/Sweden/104681/2009 (A/H4N6) segment 6 (NA) 2132.2 0.000000e+00 1328/1413 (93%) EPI513230 A/mallard/Sweden/104839/2009 (A/H4N6) segment 6 (NA) 2132.2 0.000000e+00 1328/1413 (93%) EPI513163 A/mallard/Sweden/105011/2009 (A/H4N6) segment 6 (NA) 2132.2 0.000000e+00 1328/1413 (93%) EPI470233 A/wild waterfowl/Hong Kong/MPM3375/2011 (A/H7N6) segment 6 (NA) 2132.2 0.000000e+00 1327/1412 (93%) EPI461617 A/duck/Hunan/S11893/2012 (A/H4N6) segment 6 (NA) 2132.2 0.000000e+00 1328/1413 (93%) EPI965498 A/duck/Bangladesh/26920/2015 (A/H3N6) segment 6 (NA) 2126.6 0.000000e+00 1330/1416 (93%) EPI965369 A/duck/Bangladesh/26948/2015 (A/H3N6) segment 6 (NA) 2126.6 0.000000e+00 1330/1416 (93%) EPI965295 A/duck/Bangladesh/26918/2015 (A/H3N6) segment 6 (NA) 2126.6 0.000000e+00 1330/1416 (93%) EPI692554 A/duck/Jiangxi/S2443/2012 (A/H4N6) segment 6 (NA) 2126.6 0.000000e+00 1327/1413 (93%) EPI540382 A/duck/Bangladesh/1784/2010 (A/H4N6) segment 6 (NA) 2126.6 0.000000e+00 1326/1412 (93%) EPI540350 A/duck/Bangladesh/1783/2010 (A/H4N6) segment 6 (NA) 2126.6 0.000000e+00 1326/1412 (93%) EPI514901 A/mallard/Sweden/105093/2009 (A/H4N6) segment 6 (NA) 2126.6 0.000000e+00 1327/1413 (93%) EPI513514 A/mallard/Sweden/101524/2009 (A/H4N6) segment 6 (NA) 2126.6 0.000000e+00 1328/1414 (93%) EPI513507 A/mallard/Sweden/101504/2009 (A/H4N6) segment 6 (NA) 2126.6 0.000000e+00 1327/1413 (93%) EPI513493 A/mallard/Sweden/101329/2009 (A/H4N6) segment 6 (NA) 2126.6 0.000000e+00 1327/1413 (93%) EPI513475 A/mallard/Sweden/101642/2009 (A/H4N6) segment 6 (NA) 2126.6 0.000000e+00 1327/1413 (93%) EPI513468 A/mallard/Sweden/101640/2009 (A/H4N6) segment 6 (NA) 2126.6 0.000000e+00 1328/1414 (93%) EPI513424 A/mallard/Sweden/101782/2009 (A/H0) segment 6 (NA) 2126.6 0.000000e+00 1328/1414 (93%) EPI513386 A/mallard/Sweden/102029/2009 (A/H4N6) segment 6 (NA) 2126.6 0.000000e+00 1327/1413 (93%) EPI513379 A/mallard/Sweden/102024/2009 (A/H4N6) segment 6 (NA) 2126.6 0.000000e+00 1327/1413 (93%) EPI513334 A/mallard/Sweden/102157/2009 (A/H4N6) segment 6 (NA) 2126.6 0.000000e+00 1327/1413 (93%) EPI513327 A/mallard/Sweden/102124/2009 (A/H4N6) segment 6 (NA) 2126.6 0.000000e+00 1328/1414 (93%) EPI513320 A/mallard/Sweden/102114/2009 (A/H4N6) segment 6 (NA) 2126.6 0.000000e+00 1327/1413 (93%) EPI513306 A/mallard/Sweden/102045/2009 (A/H4N6) segment 6 (NA) 2126.6 0.000000e+00 1327/1413 (93%) EPI513244 A/mallard/Sweden/104931/2009 (A/H4N6) segment 6 (NA) 2126.6 0.000000e+00 1327/1413 (93%)
niman Posted January 24, 2018 Author Report Posted January 24, 2018 Descriptions Align Segment-ID Name Score E-Value Identity EPI1144353 A/canada_goose/England/AV58_18OPpoolEP1/2018 (A/H5N6) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%) EPI1144345 A/pochard_duck/England/AVP_18_003254/2018 (A/H5N6) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%) EPI1144337 A/mute_swan/England/AVP_18_001986/2017 (A/H5N6) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%) EPI1123256 A/Tufted Duck/Netherlands/17017367-007/2017 (A/H5N6) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%) EPI1123240 A/Mute Swan/Netherlands/17017377-001/2017 (A/H5N6) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%) EPI1123232 A/Mute Swan/Netherlands/17017367-012/2017 (A/H5N6) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%) EPI1119865 A/Duck/Netherlands/17017236-001-005/2017 (A/H5N6) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%) EPI1119873 A/Duck/Netherlands/17017237-001-005/2017 (A/H5N6) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%) EPI1131091 A/Great Black-backed Gull/Netherlands/1/2017 (A/H5N6) segment 7 (MP) 1797.9 0.000000e+00 979/982 (99%) EPI1032553 A/Mulard_duck/Hungary/59163/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI1032527 A/Mulard_duck/Hungary/62902/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI1032519 A/Mulard_duck/Hungary/60369/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI1032511 A/Goose/Hungary/59763/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI1032503 A/Goose/Hungary/17985/2017 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI1032495 A/Goose/Hungary/17580/2017 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI1032487 A/Goose/Hungary/17051/2017 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI1032479 A/Goose/Hungary/15729/2017 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI962050 A/Duck/Hungary/55764/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI962039 A/Duck/Hungary/54738/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI961503 A/turkey/Italy/17VIR1574-1/2017 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI959534 A/Mute swan/Hungary/6276/2017 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI959427 A/chicken/Poland/79A/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI956123 A/Goose/Hungary/59712/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI954832 A/Mute swan/Hungary/3137/2017 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI954730 A/Mute swan/Hungary/3513/2017 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI954722 A/Mute swan/Hungary/3139/2017 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI954714 A/Mute swan/Hungary/2825/2017 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI954682 A/Mute swan/Hungary/1955/2017 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI954650 A/Duck/Hungary/984/2017 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI954634 A/Harris Hawk/Hungary/120/2017 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI954594 A/turkey/Italy/17VIR1338-3/2017 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI953518 A/mallard/Hungary/57857/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI866980 A/duck/Hungary/60441/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI860521 A/goose/Hungary/55128/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI860516 A/Mulard_duck/Hungary/54494/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI859202 A/mute_swan/Hungary/51049/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI1085345 A/goose/Czech Republic/136-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1757.3 0.000000e+00 972/982 (98%) EPI969267 A/chicken/Czech Republic/2644-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1757.3 0.000000e+00 972/982 (98%) EPI931199 A/chicken/Czech Republic/1896-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1757.3 0.000000e+00 972/982 (98%) EPI931112 A/mute swan/Czech Republic/879-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1757.3 0.000000e+00 972/982 (98%) EPI930844 A/chicken/Czech Republic/55-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1757.3 0.000000e+00 972/982 (98%) EPI930839 A/mute swan/Czech Republic/54-17_2/2017 (H5N8) (A/H5N8) segment 7 (MP) 1757.3 0.000000e+00 972/982 (98%) EPI1126346 A/mallard/Czech Republic/136-17_2/2017 (H5N8) (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI1116593 A/mute swan/Czech Republic/54-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI1087641 A/chicken/Czech Republic/988-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI1032471 A/Goose/Hungary/17261/2017 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI1002886 A/black swan/Germany-BW/R1364/2017 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI975870 A/white stork/Germany-TH/R1149/2017 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI975869 A/tawny owl/Germany-SN/R1186/2017 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 970/980 (98%) EPI962060 A/Turkey/Hungary/53136/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI961520 A/chicken/Italy/17VIR1751-3/2017 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI961512 A/chicken/Italy/17VIR1684-2/2017 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI959558 A/Rook/Hungary/4975/2017 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI959526 A/Mute swan/Hungary/6092/2017 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI959518 A/Cormorant/Hungary/6102/2017 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI959421 A/domestic goose/Poland/33/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI954864 A/White_fronted_goose/Hungary/801/2017 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI954840 A/Mallard/Hungary/5821/2017 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI954824 A/Chicken/Hungary/1751/2017 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI954746 A/Chicken/Hungary/2496/2017 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI954738 A/Mute swan/Hungary/3542/2017 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI954706 A/Mute swan/Hungary/2508/2017 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI954698 A/Mute swan/Hungary/2193/2017 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI954658 A/Goose/Hungary/1030/2017 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI954626 A/Mute swan/Hungary/119/2017 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI954586 A/turkey/Italy/17VIR973-2/2017 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI954534 A/Goose/Hungary/65817/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI869812 A/duck/France/161108h/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI859210 A/domestic_turkey/Hungary/53433/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI1127018 A/mallard/Czech Republic/1226-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1751.7 0.000000e+00 971/982 (98%) EPI1126383 A/mallard/Czech Republic/1219-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1751.7 0.000000e+00 971/982 (98%) EPI1126370 A/mute swan/Czech Republic/987-17_2/2017 (H5N8) (A/H5N8) segment 7 (MP) 1751.7 0.000000e+00 971/982 (98%) EPI1126361 A/mute swan/Czech Republic/1156-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1751.7 0.000000e+00 971/982 (98%) EPI1126360 A/mute swan/Czech Republic/1155-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1751.7 0.000000e+00 971/982 (98%) EPI1126357 A/mute swan/Czech Republic/1060-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1751.7 0.000000e+00 971/982 (98%) EPI1126351 A/mute swan/Czech Republic/967-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1751.7 0.000000e+00 971/982 (98%) EPI1126349 A/mute swan/Czech Republic/572-17_3/2017 (H5N8) (A/H5N8) segment 7 (MP) 1751.7 0.000000e+00 971/982 (98%) EPI1117249 A/mute swan/Czech Republic/964-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1751.7 0.000000e+00 971/982 (98%) EPI1081897 A/turkey/Czech Republic/38-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1751.7 0.000000e+00 971/982 (98%) EPI987885 A/chicken/Republic of Macedonia/AR1167-L02131/2017 (A/H5N8) segment 7 (MP) 1751.7 0.000000e+00 971/982 (98%) EPI969264 A/chicken/Czech Republic/2643-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1751.7 0.000000e+00 971/982 (98%) EPI969261 A/mute swan/Czech Republic/1813-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1751.7 0.000000e+00 971/982 (98%) EPI961530 A/goose/Czech Republic/821-17_2/2017 (H5N8) (A/H5N8) segment 7 (MP) 1751.7 0.000000e+00 971/982 (98%) EPI961487 A/mute swan/Czech Republic/581-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1751.7 0.000000e+00 971/982 (98%) EPI961481 A/mute swan/Czech Republic/499-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1751.7 0.000000e+00 971/982 (98%) EPI931196 A/chicken/Czech Republic/1863-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1751.7 0.000000e+00 971/982 (98%) EPI930842 A/Indian Runner Duck/Czech Republic/749-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1751.7 0.000000e+00 971/982 (98%) EPI919638 A/chicken/Czech Republic/585-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1751.7 0.000000e+00 971/982 (98%) EPI917482 A/mute swan/Czech Republic/722-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1751.7 0.000000e+00 971/982 (98%) EPI916524 A/mallard/Czech Republic/722-17_2/2017 (H5N8) (A/H5N8) segment 7 (MP) 1751.7 0.000000e+00 971/982 (98%) EPI916387 A/mute swan/Czech Republic/653-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1751.7 0.000000e+00 971/982 (98%) EPI888279 A/turkey/Czech Republic/38-17_5/2017 (H5N8) (A/H5N8) segment 7 (MP) 1749.9 0.000000e+00 970/982 (98%) EPI1032543 A/Goose/Hungary/64909/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 971/983 (98%) EPI1032535 A/Goose/Hungary/63743/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 971/983 (98%) EPI1019529 A/Eur_Wig/NL-Enumatil-Groningen/16015704-001/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 971/983 (98%) EPI961452 A/gadwall/Kurgan/2442/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 971/983 (98%) EPI954816 A/GuineaFowl/Hungary/596/2017 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 971/983 (98%) EPI954690 A/Turkey/Hungary/2030/2017 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 971/983 (98%) EPI954674 A/Greylag_goose/Hungary/1941/2017 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 971/983 (98%) EPI954666 A/Duck/Hungary/1588/2017 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 971/983 (98%)
niman Posted January 24, 2018 Author Report Posted January 24, 2018 Descriptions Align Segment-ID Name Score E-Value Identity EPI1144347 A/canada_goose/England/AV58_18OPpoolEP1/2018 (A/H5N6) segment 1 (PB2) 4207.8 0.000000e+00 2280/2280 (100%) EPI1123242 A/Mute Swan/Netherlands/17017377-001/2017 (A/H5N6) segment 1 (PB2) 4196.7 0.000000e+00 2277/2280 (99%) EPI1119867 A/Duck/Netherlands/17017237-001-005/2017 (A/H5N6) segment 1 (PB2) 4196.7 0.000000e+00 2277/2280 (99%) EPI1119859 A/Duck/Netherlands/17017236-001-005/2017 (A/H5N6) segment 1 (PB2) 4196.7 0.000000e+00 2277/2280 (99%) EPI1144339 A/pochard_duck/England/AVP_18_003254/2018 (A/H5N6) segment 1 (PB2) 4191.2 0.000000e+00 2276/2280 (99%) EPI1144331 A/mute_swan/England/AVP_18_001986/2017 (A/H5N6) segment 1 (PB2) 4191.2 0.000000e+00 2276/2280 (99%) EPI1131093 A/Black-headed Gull/Netherlands/29/2017 (A/H5N6) segment 1 (PB2) 4191.2 0.000000e+00 2276/2280 (99%) EPI1123258 A/Tufted Duck/Netherlands/17017367-007/2017 (A/H5N6) segment 1 (PB2) 4191.2 0.000000e+00 2276/2280 (99%) EPI1123234 A/Mute Swan/Netherlands/17017367-012/2017 (A/H5N6) segment 1 (PB2) 4191.2 0.000000e+00 2276/2280 (99%) EPI889820 A/mallard duck/Netherlands/15/2011 (A/H6N8) segment 1 (PB2) 3908.6 0.000000e+00 2225/2280 (97%) EPI889594 A/mallard duck/Netherlands/20/2011 (A/H6N8) segment 1 (PB2) 3908.6 0.000000e+00 2225/2280 (97%) EPI889410 A/Eurasian teal/Netherlands/1/2011 (A/H3N8) segment 1 (PB2) 3908.6 0.000000e+00 2225/2280 (97%) EPI890266 A/greater white-fronted goose/Netherlands/6/2011 (A/H6N8) segment 1 (PB2) 3886.5 0.000000e+00 2221/2280 (97%) EPI1010712 A/white-fronted goose/Netherlands/5/2011 (A/H6N8) segment 1 (PB2) 3875.4 0.000000e+00 2219/2280 (97%) EPI1014087 A/mallard duck/Georgia/11/2011 (A/H1N1) segment 1 (PB2) 3864.3 0.000000e+00 2217/2280 (97%) EPI1013538 A/mallard duck/Netherlands/18/2012 (A/H4N2) segment 1 (PB2) 3864.3 0.000000e+00 2217/2280 (97%) EPI1011210 A/mallard duck/Netherlands/16/2012 (A/H3N2) segment 1 (PB2) 3864.3 0.000000e+00 2217/2280 (97%) EPI618045 A/mallard/Republic of Georgia/12/2011 (A/H10N4) segment 1 (PB2) 3864.3 0.000000e+00 2217/2280 (97%) EPI889776 A/mallard duck/Netherlands/32/2011 (A/H5N2) segment 1 (PB2) 3858.8 0.000000e+00 2217/2281 (97%) EPI677988 A/chicken/Italy/13VIR4527-12/2013 (A/H7N7) segment 1 (PB2) 3853.2 0.000000e+00 2215/2280 (97%) EPI560338 A/Italy/3/2013 (A/H7N7) segment 1 (PB2) 3853.2 0.000000e+00 2215/2280 (97%) EPI678028 A/chicken/Italy/13VIR4541-7/2013 (A/H7N7) segment 1 (PB2) 3849.5 0.000000e+00 2214/2280 (97%) EPI678004 A/chicken/Italy/13VIR4541-32/2013 (A/H7N7) segment 1 (PB2) 3849.5 0.000000e+00 2214/2280 (97%) EPI677996 A/chicken/Italy/13VIR4527-11/2013 (A/H7N7) segment 1 (PB2) 3849.5 0.000000e+00 2214/2280 (97%) EPI678076 A/chicken/Italy/13VIR5051-3/2013 (A/H7N7) segment 1 (PB2) 3847.7 0.000000e+00 2214/2280 (97%) EPI678060 A/chicken/Italy/13VIR4774/2013 (A/H7N7) segment 1 (PB2) 3847.7 0.000000e+00 2214/2280 (97%) EPI678052 A/chicken/Italy/13VIR4603-1/2013 (A/H7N7) segment 1 (PB2) 3847.7 0.000000e+00 2214/2280 (97%) EPI678036 A/chicken/Italy/13VIR4541-8/2013 (A/H7N7) segment 1 (PB2) 3847.7 0.000000e+00 2214/2280 (97%) EPI341793 A/mallard/France/090360/2009 (A/H9N2) segment 1 (PB2) 3847.7 0.000000e+00 2214/2280 (97%) EPI678012 A/chicken/Italy/13VIR4541-33/2013 (A/H7N7) segment 1 (PB2) 3845.8 0.000000e+00 2213/2280 (97%) EPI678068 A/chicken/Italy/13VIR5051-1/2013 (A/H7N7) segment 1 (PB2) 3844.0 0.000000e+00 2213/2280 (97%) EPI891105 A/mallard duck/Netherlands/23/2012 (A/H11N9) segment 1 (PB2) 3842.2 0.000000e+00 2213/2280 (97%) EPI816828 A/turkey/Poland/14/2013 (A/H9N2) segment 1 (PB2) 3842.2 0.000000e+00 2214/2281 (97%) EPI678084 A/chicken/Italy/13VIR5091/2013 (A/H7N7) segment 1 (PB2) 3842.2 0.000000e+00 2213/2280 (97%) EPI678044 A/chicken/Italy/13VIR4541-9/2013 (A/H7N7) segment 1 (PB2) 3842.2 0.000000e+00 2213/2280 (97%) EPI678020 A/chicken/Italy/13VIR4541-34/2013 (A/H7N7) segment 1 (PB2) 3842.2 0.000000e+00 2213/2280 (97%) EPI678092 A/turkey/Italy/13VIR4678-1/2013 (A/H7N7) segment 1 (PB2) 3840.3 0.000000e+00 2212/2280 (97%) EPI1013811 A/mallard duck/Netherlands/10/2013 (A/H4N6) segment 1 (PB2) 3836.6 0.000000e+00 2213/2281 (97%) EPI773762 A/chicken/Netherlands/16007311-037041/2016 (A/H7N9) segment 1 (PB2) 3831.1 0.000000e+00 2211/2280 (96%) EPI617974 A/common Teal/Republic of Georgia/1/2011 (A/H3N8) segment 1 (PB2) 3825.5 0.000000e+00 2211/2281 (96%) EPI774511 A/chicken/Netherlands/15007212/15 (A/H10N7) segment 1 (PB2) 3814.5 0.000000e+00 2208/2280 (96%) EPI718523 A/Anas platyrhynchos/Belgium/17330cls42/2013 (A/H5N2) segment 1 (PB2) 3808.9 0.000000e+00 2207/2280 (96%) EPI617882 A/mallard/Republic of Georgia/13/2011 (A/H6N2) segment 1 (PB2) 3808.9 0.000000e+00 2207/2280 (96%) EPI1036183 A/duck/Moscow/4652/2011 (A/H4N6) segment 1 (PB2) 3805.2 0.000000e+00 2206/2280 (96%) EPI890191 A/mallard duck/Netherlands/30/2014 (A/H4N6) segment 1 (PB2) 3803.4 0.000000e+00 2206/2280 (96%) EPI816836 A/turkey/Poland/08/2014 (A/H9N2) segment 1 (PB2) 3803.4 0.000000e+00 2206/2280 (96%) EPI816844 A/turkey/Poland/09/2014 (A/H9N2) segment 1 (PB2) 3799.7 0.000000e+00 2205/2280 (96%) EPI687184 A/chicken/Scotland/532/2016 (A/H5N1) segment 1 (PB2) 3797.8 0.000000e+00 2198/2270 (96%) EPI1133958 A/duck/Mongolia/27/2011 (A/H3N8) segment 1 (PB2) 3781.2 0.000000e+00 2202/2280 (96%) EPI890883 A/greater white-fronted goose/Netherlands/2/2007 (A/H6N8) segment 1 (PB2) 3770.1 0.000000e+00 2200/2280 (96%) EPI839725 A/chicken/France/150169a/2015 (A/H5N1) segment 1 (PB2) 3764.6 0.000000e+00 2200/2281 (96%) EPI1014358 A/mallard duck/Netherlands/18/2014 (A/H1N1) segment 1 (PB2) 3753.5 0.000000e+00 2197/2280 (96%) EPI174657 A/duck/Hunan/689/2006 (A/H5N1) segment 1 (PB2) 3748.0 0.000000e+00 2196/2280 (96%) EPI221999 A/environment/Hunan/1-8/2007 (A/H5N1) segment 1 (PB2) 3742.4 0.000000e+00 2195/2280 (96%) EPI174670 A/chicken/Hunan/3157/2006 (A/H5N1) segment 1 (PB2) 3736.9 0.000000e+00 2195/2281 (96%) EPI174669 A/chicken/Hubei/3002/2007 (A/H5N1) segment 1 (PB2) 3731.4 0.000000e+00 2193/2280 (96%) EPI174668 A/duck/Hubei/2911/2007 (A/H5N1) segment 1 (PB2) 3731.4 0.000000e+00 2193/2280 (96%) EPI174667 A/chicken/Hubei/2856/2007 (A/H5N1) segment 1 (PB2) 3731.4 0.000000e+00 2193/2280 (96%) EPI174665 A/duck/Hunan/1964/2007 (A/H5N1) segment 1 (PB2) 3731.4 0.000000e+00 2193/2280 (96%) EPI222147 A/lesser kestrel/Heilongjiang/194/2007 (A/H5N1) segment 1 (PB2) 3725.8 0.000000e+00 2192/2280 (96%) EPI823778 A/environment/Kamchatka/24/2016 (A/H13N8) segment 1 (PB2) 3724.0 0.000000e+00 2192/2280 (96%) EPI484292 A/chicken/Italy/13VIR4527-11/2013 (A/H7N7) segment 1 (PB2) 3722.1 0.000000e+00 2147/2214 (96%) EPI823762 A/environment/Kamchatka/23/2016 (A/H13N8) segment 1 (PB2) 3720.3 0.000000e+00 2191/2280 (96%) EPI262682 A/aquatic bird/Korea/w120/2006 (A/H5N2) segment 1 (PB2) 3714.7 0.000000e+00 2191/2281 (96%) EPI262680 A/aquatic bird/Korea/w113/2006 (A/H5N2) segment 1 (PB2) 3714.7 0.000000e+00 2191/2281 (96%) EPI173585 A/swine/Korea/C12/2008 (A/H5N2) segment 1 (PB2) 3714.7 0.000000e+00 2191/2281 (96%) EPI1013684 A/mallard duck/Netherlands/40/2011 (A/H7N1) segment 1 (PB2) 3709.2 0.000000e+00 2190/2281 (96%) EPI1013496 A/mallard duck/Netherlands/48/2011 (A/H7N1) segment 1 (PB2) 3709.2 0.000000e+00 2190/2281 (96%) EPI889596 A/mallard duck/Netherlands/8/2012 (A/H1N1) segment 1 (PB2) 3709.2 0.000000e+00 2189/2280 (96%) EPI839733 A/duck/France/150233/2015 (A/H5N2) segment 1 (PB2) 3709.2 0.000000e+00 2189/2280 (96%) EPI809271 A/pigeon/Egypt/S10409A/2014 (A/H9N2) segment 1 (PB2) 3709.2 0.000000e+00 2190/2281 (96%) EPI262683 A/aquatic bird/Korea/w121/2006 (A/H5N2) segment 1 (PB2) 3709.2 0.000000e+00 2190/2281 (96%) EPI1011215 A/mallard duck/Netherlands/45/2011 (A/H8N1) segment 1 (PB2) 3703.7 0.000000e+00 2189/2281 (95%) EPI890747 A/mallard duck/Netherlands/44/2011 (A/H7N1) segment 1 (PB2) 3703.7 0.000000e+00 2189/2281 (95%) EPI889269 A/mallard duck/Netherlands/31/2012 (A/H7N1) segment 1 (PB2) 3703.7 0.000000e+00 2189/2281 (95%) EPI889248 A/mallard duck/Netherlands/43/2011 (A/H7N1) segment 1 (PB2) 3703.7 0.000000e+00 2189/2281 (95%) EPI839741 A/duck/France/150236/2015 (A/H5N9) segment 1 (PB2) 3703.7 0.000000e+00 2188/2280 (95%) EPI262681 A/aquatic bird/Korea/w114/2006 (A/H5N2) segment 1 (PB2) 3703.7 0.000000e+00 2189/2281 (95%) EPI174662 A/duck/Henan/1652/2006 (A/H5N1) segment 1 (PB2) 3698.1 0.000000e+00 2187/2280 (95%) EPI174660 A/duck/Henan/1647/2006 (A/H5N1) segment 1 (PB2) 3698.1 0.000000e+00 2188/2281 (95%) EPI961485 A/environment/Kamchatka/117/2016 (A/H13N8) segment 1 (PB2) 3696.3 0.000000e+00 2187/2280 (95%) EPI940605 A/guinea fowl/France/150207n/2015 (A/H5N9) segment 1 (PB2) 3692.6 0.000000e+00 2187/2281 (95%) EPI167950 A/long-tailed shrike/Hong Kong/2762/2007 (A/H5N1) segment 1 (PB2) 3688.9 0.000000e+00 2170/2257 (96%) EPI222581 A/scaly-breasted munia/Hong Kong/45/2007 (A/H5N1) segment 1 (PB2) 3687.0 0.000000e+00 2175/2265 (96%) EPI220527 A/environment/Hunan/6-69/2008 (A/H5N1) segment 1 (PB2) 3687.0 0.000000e+00 2185/2280 (95%) EPI809383 A/pigeon/Egypt/S10408B/2014 (A/H9N2) segment 1 (PB2) 3670.4 0.000000e+00 2184/2282 (95%) EPI1087898 A/ Quail /Egypt/1253V/2016 (A/H9N2) segment 1 (PB2) 3637.2 0.000000e+00 2176/2280 (95%) EPI1086370 A/Chicken/Egypt/374V/2016 (A/H9N2) segment 1 (PB2) 3637.2 0.000000e+00 2178/2282 (95%) EPI1006524 A/duck/Guangxi/015D2/2009 (A/H3N2) segment 1 (PB2) 3637.2 0.000000e+00 2176/2280 (95%) EPI167855 A/crested goshawk/Hong Kong/458/2007 (A/H5N1) segment 1 (PB2) 3631.6 0.000000e+00 2139/2226 (96%) EPI316548 A/spot-billed duck/Korea/KNU SYG06/2006 (A/H5N3) segment 1 (PB2) 3581.8 0.000000e+00 2166/2280 (95%) EPI401812 A/green-winged teal/Xianghai/430/2011 (A/H5N2) segment 1 (PB2) 3576.2 0.000000e+00 2165/2280 (94%) EPI534805 A/duck/Zhejiang/D18/2013 (A/H3N3) segment 1 (PB2) 3570.7 0.000000e+00 2164/2280 (94%) EPI534804 A/duck/Zhejiang/D17/2013 (A/H3N3) segment 1 (PB2) 3570.7 0.000000e+00 2164/2280 (94%) EPI534803 A/duck/Zhejiang/D16/2013 (A/H3N3) segment 1 (PB2) 3570.7 0.000000e+00 2164/2280 (94%) EPI534800 A/duck/Zhejiang/D13/2013 (A/H3N2) segment 1 (PB2) 3570.7 0.000000e+00 2164/2280 (94%) EPI534799 A/duck/Zhejiang/D11/2013 (A/H3N2) segment 1 (PB2) 3570.7 0.000000e+00 2164/2280 (94%) EPI469171 A/wild duck/Guangdong/520/2001 (A/H1N9) segment 1 (PB2) 3570.7 0.000000e+00 2164/2280 (94%) EPI99874 A/duck/Denmark/65047/04 (A/H5N2) segment 1 (PB2) 3570.7 0.000000e+00 2164/2280 (94%) EPI387373 A/whooper swan/Mongolia/1-21/2007 (A/H3N1) segment 1 (PB2) 3568.8 0.000000e+00 2163/2279 (94%)
niman Posted January 24, 2018 Author Report Posted January 24, 2018 Descriptions Align Segment-ID Name Score E-Value Identity EPI1144348 A/canada_goose/England/AV58_18OPpoolEP1/2018 (A/H5N6) segment 2 (PB1) 4196.7 0.000000e+00 2274/2274 (100%) EPI1144332 A/mute_swan/England/AVP_18_001986/2017 (A/H5N6) segment 2 (PB1) 4180.1 0.000000e+00 2271/2275 (99%) EPI1123259 A/Tufted Duck/Netherlands/17017367-007/2017 (A/H5N6) segment 2 (PB1) 4180.1 0.000000e+00 2271/2275 (99%) EPI1119860 A/Duck/Netherlands/17017236-001-005/2017 (A/H5N6) segment 2 (PB1) 4180.1 0.000000e+00 2271/2275 (99%) EPI1144340 A/pochard_duck/England/AVP_18_003254/2018 (A/H5N6) segment 2 (PB1) 4174.5 0.000000e+00 2270/2275 (99%) EPI1123235 A/Mute Swan/Netherlands/17017367-012/2017 (A/H5N6) segment 2 (PB1) 4174.5 0.000000e+00 2270/2275 (99%) EPI1119868 A/Duck/Netherlands/17017237-001-005/2017 (A/H5N6) segment 2 (PB1) 4174.5 0.000000e+00 2270/2275 (99%) EPI1131094 A/Black-headed Gull/Netherlands/29/2017 (A/H5N6) segment 2 (PB1) 4169.0 0.000000e+00 2269/2275 (99%) EPI1123243 A/Mute Swan/Netherlands/17017377-001/2017 (A/H5N6) segment 2 (PB1) 4169.0 0.000000e+00 2269/2275 (99%) EPI1131086 A/Great Black-backed Gull/Netherlands/1/2017 (A/H5N6) segment 2 (PB1) 4119.1 0.000000e+00 2260/2275 (99%) EPI909458 A/chicken/Kalmykia/2643/2016 (A/H5N8) segment 2 (PB1) 4063.7 0.000000e+00 2250/2275 (98%) EPI909450 A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 2 (PB1) 4063.7 0.000000e+00 2250/2275 (98%) EPI961447 A/gadwall/Kurgan/2442/2016 (A/H5N8) segment 2 (PB1) 4058.2 0.000000e+00 2249/2275 (98%) EPI1117251 A/T_Dk/NL-Werkendam/16014159-001/2016 (A/H5N5) segment 2 (PB1) 4052.7 0.000000e+00 2248/2275 (98%) EPI1019844 A/T_Dk/NL-Zeewolde/16013976-005/2016 (A/H5N8) segment 2 (PB1) 4052.7 0.000000e+00 2248/2275 (98%) EPI1019836 A/T_Dk/NL-Zeewolde/16013976-004-006/2016 (A/H5N8) segment 2 (PB1) 4052.7 0.000000e+00 2248/2275 (98%) EPI1019788 A/T_Dk/NL-Rotterdam/16014155-001/2016 (A/H5N8) segment 2 (PB1) 4052.7 0.000000e+00 2248/2275 (98%) EPI1019780 A/T_Dk/NL-Roggebotsluis/16014462-015/2016 (A/H5N8) segment 2 (PB1) 4052.7 0.000000e+00 2248/2275 (98%) EPI1019724 A/Magpie/NL-Volendam/16014331-002/2016 (A/H5N8) segment 2 (PB1) 4052.7 0.000000e+00 2248/2275 (98%) EPI1019716 A/M_Swan/NL-Roggebotsluis/16014462-019/2016 (A/H5N8) segment 2 (PB1) 4052.7 0.000000e+00 2248/2275 (98%) EPI1019708 A/L-bl-ba-gull/NL-Sovon/16014324-014/2016 (A/H5N8) segment 2 (PB1) 4052.7 0.000000e+00 2248/2275 (98%) EPI1019692 A/Gull1/NL-Marker Wadden/16014466-011/2016 (A/H5N8) segment 2 (PB1) 4052.7 0.000000e+00 2248/2275 (98%) EPI1019684 A/Gull/NL-Marker Wadden/16014466-020/2016 (A/H5N8) segment 2 (PB1) 4052.7 0.000000e+00 2248/2275 (98%) EPI1019652 A/G_c_grebe/NL-Monnickendam/16013865-009-010/2016 (A/H5N8) segment 2 (PB1) 4052.7 0.000000e+00 2248/2275 (98%) EPI1019628 A/Eur_Wig/NL-Wormer/16016143-002/2016 (A/H5N8) segment 2 (PB1) 4052.7 0.000000e+00 2248/2275 (98%) EPI1019596 A/Eur_Wig/NL-Terschelling/16015692-010/2016 (A/H5N8) segment 2 (PB1) 4052.7 0.000000e+00 2248/2275 (98%) EPI1019532 A/Eur_Wig/NL-Enumatil-Groningen/16015704-001/2016 (A/H5N8) segment 2 (PB1) 4052.7 0.000000e+00 2248/2275 (98%) EPI1019460 A/Dk/NL-Biddinghuizen/16015083-016-020/2016 (A/H5N8) segment 2 (PB1) 4052.7 0.000000e+00 2248/2275 (98%) EPI1019396 A/Ch/NL-Abbega/X16015736/2016 (A/H5N8) segment 2 (PB1) 4052.7 0.000000e+00 2248/2275 (98%) EPI1019388 A/C_Gull/NL-Slootdorp/16014102-003/2016 (A/H5N8) segment 2 (PB1) 4052.7 0.000000e+00 2248/2275 (98%) EPI1019380 A/Buzzard/NL-Durgerdam/16015100-004/2016 (A/H5N8) segment 2 (PB1) 4052.7 0.000000e+00 2248/2275 (98%) EPI1019372 A/Bl_H_gull/NL-Slootdorp/16014102-002/2016 (A/H5N8) segment 2 (PB1) 4052.7 0.000000e+00 2248/2275 (98%) EPI1019364 A/Bk_swan/NL-Den Oever/16013973-002/2016 (A/H5N8) segment 2 (PB1) 4052.7 0.000000e+00 2248/2275 (98%) EPI956130 A/chicken/Germany-NI/R11406/2016 (A/H5N8) segment 2 (PB1) 4052.7 0.000000e+00 2248/2275 (98%) EPI954581 A/chicken/Italy/17VIR653-12/2017 (A/H5N8) segment 2 (PB1) 4052.7 0.000000e+00 2248/2275 (98%) EPI922322 A/turkey/Germany-SH/R8595/2016 (A/H5N8) segment 2 (PB1) 4052.7 0.000000e+00 2248/2275 (98%) EPI860495 A/tufted duck/Germany-SH/R8444/2016 (A/H5N8) segment 2 (PB1) 4052.7 0.000000e+00 2248/2275 (98%) EPI860390 A/tufted_duck/Germany/AR8444-L01987/2016 (A/H5N8) segment 2 (PB1) 4052.7 0.000000e+00 2248/2275 (98%) EPI860234 A/wild duck/Poland/82A/2016 (A/H5N8) segment 2 (PB1) 4052.7 0.000000e+00 2248/2275 (98%) EPI967462 A/domestic duck/Germany-MV/R9764/2016 (A/H5N8) segment 2 (PB1) 4049.0 0.000000e+00 2247/2275 (98%) EPI1044546 A/mute swan/Kaliningrad/132/2017 (A/H5N8) segment 2 (PB1) 4047.1 0.000000e+00 2247/2275 (98%) EPI1019876 A/Teal/NL-Ferwert/16015273-013/2016 (A/H5N8) segment 2 (PB1) 4047.1 0.000000e+00 2247/2275 (98%) EPI1019868 A/T_Dk/NL-Zuidoost Beemster/16014148-009/2016 (A/H5N8) segment 2 (PB1) 4047.1 0.000000e+00 2247/2275 (98%) EPI1019860 A/T_Dk/NL-Zuidoost Beemster/16014148-002/2016 (A/H5N8) segment 2 (PB1) 4047.1 0.000000e+00 2247/2275 (98%) EPI1019852 A/T_Dk/NL-Zeewolde/16013976-006/2016 (A/H5N8) segment 2 (PB1) 4047.1 0.000000e+00 2247/2275 (98%) EPI1019828 A/T_Dk/NL-Zeewolde/16013976-004/2016 (A/H5N8) segment 2 (PB1) 4047.1 0.000000e+00 2247/2275 (98%) EPI1019820 A/T_Dk/NL-Zeewolde/16013976-001-003/2016 (A/H5N8) segment 2 (PB1) 4047.1 0.000000e+00 2247/2275 (98%) EPI1019812 A/T_Dk/NL-Zeewolde/16013976-001/2016 (A/H5N8) segment 2 (PB1) 4047.1 0.000000e+00 2247/2275 (98%) EPI1019804 A/T_Dk/NL-Werkendam/16014159-003/2016 (A/H5N8) segment 2 (PB1) 4047.1 0.000000e+00 2247/2275 (98%) EPI1019796 A/T_Dk/NL-Werkendam/16014159-002/2016 (A/H5N8) segment 2 (PB1) 4047.1 0.000000e+00 2247/2275 (98%) EPI1019772 A/T_Dk/NL-Monnickendam/16013865-006-008/2016 (A/H5N8) segment 2 (PB1) 4047.1 0.000000e+00 2247/2275 (98%) EPI1019756 A/Sea_eagle/NL-Assen/16015398-002/2016 (A/H5N8) segment 2 (PB1) 4047.1 0.000000e+00 2247/2275 (98%) EPI1019668 A/Gr_bk_bd_gull/NL-Slootdorp/16014102-005/2016 (A/H5N8) segment 2 (PB1) 4047.1 0.000000e+00 2247/2275 (98%) EPI1019660 A/Go/NL-Roggebotsluis/16014462-010/2016 (A/H5N8) segment 2 (PB1) 4047.1 0.000000e+00 2247/2275 (98%) EPI1019612 A/Eur_Wig/NL-Walterswald/16015923-003/2016 (A/H5N8) segment 2 (PB1) 4047.1 0.000000e+00 2247/2275 (98%) EPI1019572 A/Eur_Wig/NL-Leeuwarden/16015699-002/2016 (A/H5N8) segment 2 (PB1) 4047.1 0.000000e+00 2247/2275 (98%) EPI1019564 A/Eur_Wig/NL-Groningen/16015376-003/2016 (A/H5N8) segment 2 (PB1) 4047.1 0.000000e+00 2247/2275 (98%) EPI1019540 A/Eur_Wig/NL-Ferwert/16015273-002/2016 (A/H5N8) segment 2 (PB1) 4047.1 0.000000e+00 2247/2275 (98%) EPI1019500 A/Eur_Wig/NL-Akkrum/16015817-003/2016 (A/H5N8) segment 2 (PB1) 4047.1 0.000000e+00 2247/2275 (98%) EPI1019484 A/Dk/NL-Rotterdam/16014008-001-005/2016 (A/H5N8) segment 2 (PB1) 4047.1 0.000000e+00 2247/2275 (98%) EPI1019468 A/Dk/NL-Biddinghuizen/16015145-021-025/2016 (A/H5N8) segment 2 (PB1) 4047.1 0.000000e+00 2247/2275 (98%) EPI1019452 A/Dk/NL-Biddinghuizen/16014829-011-015/2016 (A/H5N8) segment 2 (PB1) 4047.1 0.000000e+00 2247/2275 (98%) EPI1019420 A/Ch/NL-Hiaure/16016112-001-005/2016 (A/H5N8) segment 2 (PB1) 4047.1 0.000000e+00 2247/2275 (98%) EPI1019412 A/Ch/NL-Den Oever/16014231-001/2016 (A/H5N8) segment 2 (PB1) 4047.1 0.000000e+00 2247/2275 (98%) EPI969252 A/Tufted Duck/Switzerland/V237/2016 (A/H5N8) segment 2 (PB1) 4047.1 0.000000e+00 2247/2275 (98%) EPI959329 A/Mew Gull/Netherlands/1/2016 (A/H5N8) segment 2 (PB1) 4047.1 0.000000e+00 2247/2275 (98%) EPI954781 A/Common_tern/Hungary/8187/2017 (A/H5N8) segment 2 (PB1) 4047.1 0.000000e+00 2247/2275 (98%) EPI909362 A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 2 (PB1) 4047.1 0.000000e+00 2247/2275 (98%) EPI885204 A/domestic duck/Germany-MV/R9869/2016 (A/H5N8) segment 2 (PB1) 4047.1 0.000000e+00 2247/2275 (98%) EPI881281 A/chicken/Germany-MV/R8790/2016 (A/H5N8) segment 2 (PB1) 4047.1 0.000000e+00 2247/2275 (98%) EPI881276 A/chicken/Germany-SH/R8758/2016 (A/H5N8) segment 2 (PB1) 4047.1 0.000000e+00 2247/2275 (98%) EPI863863 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 2 (PB1) 4047.1 0.000000e+00 2247/2275 (98%) EPI860398 A/tufted_duck/Germany/AR8459-L01988/2016 (A/H5N8) segment 2 (PB1) 4047.1 0.000000e+00 2247/2275 (98%) EPI859659 A/tufted_duck/Germany/AR8444-L01986/2016 (A/H5N8) segment 2 (PB1) 4047.1 0.000000e+00 2247/2275 (98%) EPI1019764 A/T_Dk/NL-Almeerder Zand/16014341-003/2016 (A/H5N8) segment 2 (PB1) 4041.6 0.000000e+00 2246/2275 (98%) EPI1019748 A/P_falcon/NL-Vrouwenpolder (Zeeland)/16015510-001/2016 (A/H5N8) segment 2 (PB1) 4041.6 0.000000e+00 2246/2275 (98%) EPI1019700 A/Gull10/NL-Marker Wadden/16014466-014/2016 (A/H5N8) segment 2 (PB1) 4041.6 0.000000e+00 2246/2275 (98%) EPI1019556 A/Eur_Wig/NL-Greonterp/16015653-001/2016 (A/H5N8) segment 2 (PB1) 4041.6 0.000000e+00 2246/2275 (98%) EPI1019524 A/Eur_Wig/NL-Drieborg (Dollard)/16015513-001/2016 (A/H5N8) segment 2 (PB1) 4041.6 0.000000e+00 2246/2275 (98%) EPI962063 A/Turkey/Hungary/53136/2016 (A/H5N8) segment 2 (PB1) 4041.6 0.000000e+00 2246/2275 (98%) EPI954811 A/Greylag_goose/Hungary/320/2017 (A/H5N8) segment 2 (PB1) 4041.6 0.000000e+00 2246/2275 (98%) EPI954661 A/Goose/Hungary/1030/2017 (A/H5N8) segment 2 (PB1) 4041.6 0.000000e+00 2246/2275 (98%) EPI931205 A/chicken/Germany-MV/R10048/2016 (A/H5N8) segment 2 (PB1) 4041.6 0.000000e+00 2246/2275 (98%) EPI909426 A/turkey/Rostov/11/2017 (A/H5N8) segment 2 (PB1) 4041.6 0.000000e+00 2246/2275 (98%) EPI859205 A/domestic_turkey/Hungary/53433/2016 (A/H5N8) segment 2 (PB1) 4041.6 0.000000e+00 2246/2275 (98%) EPI869685 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 2 (PB1) 4037.9 0.000000e+00 2245/2275 (98%) EPI1122891 A/chicken/Greece/39_2017b/2017 (A/H5N6) segment 2 (PB1) 4036.0 0.000000e+00 2245/2275 (98%) EPI1122875 A/chicken/Greece/39_2017/2017 (A/H5N6) segment 2 (PB1) 4036.0 0.000000e+00 2245/2275 (98%) EPI1032482 A/Goose/Hungary/15729/2017 (A/H5N8) segment 2 (PB1) 4036.0 0.000000e+00 2245/2275 (98%) EPI1019740 A/Mal/NL-Mastenbroek/16015378-002/2016 (A/H5N8) segment 2 (PB1) 4036.0 0.000000e+00 2245/2275 (98%) EPI1019732 A/Mal/NL-IJsselmuiden/16015448-002/2016 (A/H5N8) segment 2 (PB1) 4036.0 0.000000e+00 2245/2275 (98%) EPI1019644 A/Eur_Wig/NL-Zwolle/16015820-002/2016 (A/H5N8) segment 2 (PB1) 4036.0 0.000000e+00 2245/2275 (98%) EPI1019548 A/Eur_Wig/NL-Gouda/16015824-001/2016 (A/H5N8) segment 2 (PB1) 4036.0 0.000000e+00 2245/2275 (98%) EPI1019516 A/Eur_Wig/NL-De Waal (Texel)/16014891-004/2016 (A/H5N8) segment 2 (PB1) 4036.0 0.000000e+00 2245/2275 (98%) EPI1019444 A/Crow/NL-Oostwoud/16015372-004/2016 (A/H5N8) segment 2 (PB1) 4036.0 0.000000e+00 2245/2275 (98%) EPI1007673 A/peacock/Belgium/1017/2017 (A/H5N8) segment 2 (PB1) 4036.0 0.000000e+00 2245/2275 (98%) EPI1007665 A/chicken/Belgium/807/2017 (A/H5N8) segment 2 (PB1) 4036.0 0.000000e+00 2245/2275 (98%) EPI954875 A/Mallard/Hungary/1574a/2017 (A/H5N8) segment 2 (PB1) 4036.0 0.000000e+00 2245/2275 (98%) EPI954867 A/White_fronted_goose/Hungary/801/2017 (A/H5N8) segment 2 (PB1) 4036.0 0.000000e+00 2245/2275 (98%) EPI954859 A/Mallard/Hungary/1574b/2017 (A/H5N8) segment 2 (PB1) 4036.0 0.000000e+00 2245/2275 (98%)
niman Posted January 24, 2018 Author Report Posted January 24, 2018 Descriptions Align Segment-ID Name Score E-Value Identity EPI1144349 A/canada_goose/England/AV58_18OPpoolEP1/2018 (A/H5N6) segment 3 (PA) 3973.3 0.000000e+00 2151/2151 (100%) EPI1123257 A/Tufted Duck/Netherlands/17017367-007/2017 (A/H5N6) segment 3 (PA) 3967.7 0.000000e+00 2150/2151 (99%) EPI1123241 A/Mute Swan/Netherlands/17017377-001/2017 (A/H5N6) segment 3 (PA) 3967.7 0.000000e+00 2150/2151 (99%) EPI1119869 A/Duck/Netherlands/17017237-001-005/2017 (A/H5N6) segment 3 (PA) 3967.7 0.000000e+00 2150/2151 (99%) EPI1123233 A/Mute Swan/Netherlands/17017367-012/2017 (A/H5N6) segment 3 (PA) 3962.2 0.000000e+00 2149/2151 (99%) EPI1119861 A/Duck/Netherlands/17017236-001-005/2017 (A/H5N6) segment 3 (PA) 3962.2 0.000000e+00 2149/2151 (99%) EPI1144341 A/pochard_duck/England/AVP_18_003254/2018 (A/H5N6) segment 3 (PA) 3956.6 0.000000e+00 2148/2151 (99%) EPI1144333 A/mute_swan/England/AVP_18_001986/2017 (A/H5N6) segment 3 (PA) 3956.6 0.000000e+00 2148/2151 (99%) EPI1131095 A/Black-headed Gull/Netherlands/29/2017 (A/H5N6) segment 3 (PA) 3956.6 0.000000e+00 2148/2151 (99%) EPI1019770 A/T_Dk/NL-Monnickendam/16013865-006-008/2016 (A/H5N8) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%) EPI1019722 A/Magpie/NL-Volendam/16014331-002/2016 (A/H5N8) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%) EPI1019706 A/L-bl-ba-gull/NL-Sovon/16014324-014/2016 (A/H5N8) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%) EPI1019650 A/G_c_grebe/NL-Monnickendam/16013865-009-010/2016 (A/H5N8) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%) EPI1019562 A/Eur_Wig/NL-Groningen/16015376-003/2016 (A/H5N8) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%) EPI1019442 A/Crow/NL-Oostwoud/16015372-004/2016 (A/H5N8) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%) EPI1019378 A/Buzzard/NL-Durgerdam/16015100-004/2016 (A/H5N8) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%) EPI1019746 A/P_falcon/NL-Vrouwenpolder (Zeeland)/16015510-001/2016 (A/H5N8) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%) EPI1019690 A/Gull1/NL-Marker Wadden/16014466-011/2016 (A/H5N8) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%) EPI1019666 A/Gr_bk_bd_gull/NL-Slootdorp/16014102-005/2016 (A/H5N8) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%) EPI1019658 A/Go/NL-Roggebotsluis/16014462-010/2016 (A/H5N8) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%) EPI1044547 A/mute swan/Kaliningrad/132/2017 (A/H5N8) segment 3 (PA) 3895.7 0.000000e+00 2137/2151 (99%) EPI1019802 A/T_Dk/NL-Werkendam/16014159-003/2016 (A/H5N8) segment 3 (PA) 3895.7 0.000000e+00 2137/2151 (99%) EPI1019794 A/T_Dk/NL-Werkendam/16014159-002/2016 (A/H5N8) segment 3 (PA) 3895.7 0.000000e+00 2137/2151 (99%) EPI1019738 A/Mal/NL-Mastenbroek/16015378-002/2016 (A/H5N8) segment 3 (PA) 3895.7 0.000000e+00 2137/2151 (99%) EPI965226 A/black-tailed godwit/Bangladesh/24734/2015 (A/H7N5) segment 3 (PA) 3738.7 0.000000e+00 2109/2152 (98%) EPI926008 A/domestic_duck/Siberia/49_feather/2016 (A/H6N8) segment 3 (PA) 3729.5 0.000000e+00 2108/2152 (97%) EPI926000 A/mallard/Chany/355/2016 (A/H1N1) segment 3 (PA) 3724.0 0.000000e+00 2107/2152 (97%) EPI925992 A/gadwall/Chany/315/2016 (A/H1N1) segment 3 (PA) 3724.0 0.000000e+00 2107/2152 (97%) EPI925984 A/mallard/Chany/313/2016 (A/H1N1) segment 3 (PA) 3724.0 0.000000e+00 2107/2152 (97%) EPI965379 A/duck/Bangladesh/24697/2015 (A/H15N9) segment 3 (PA) 3712.9 0.000000e+00 2105/2152 (97%) EPI965278 A/duck/Bangladesh/24704/2015 (A/H15N9) segment 3 (PA) 3712.9 0.000000e+00 2105/2152 (97%) EPI965237 A/duck/Bangladesh/25891/2015 (A/H4N6) segment 3 (PA) 3712.9 0.000000e+00 2105/2152 (97%) EPI963325 A/duck/Bangladesh/24035/2014 (A/H10N1) segment 3 (PA) 3712.9 0.000000e+00 2105/2152 (97%) EPI614265 A/mallard/Republic of Georgia/13/2011 (A/H6N2) segment 3 (PA) 3712.9 0.000000e+00 2106/2153 (97%) EPI965322 A/duck/Bangladesh/26918/2015 (A/H3N6) segment 3 (PA) 3707.3 0.000000e+00 2104/2152 (97%) EPI446529 A/wild goose/Dongting/C1037/2011 (A/H12N8) segment 3 (PA) 3696.3 0.000000e+00 2101/2151 (97%) EPI884265 A/mallard/Chany/126K-2/2014 (A/H8N4) segment 3 (PA) 3690.7 0.000000e+00 2101/2152 (97%) EPI704339 A/duck/Mongolia/179/2015 (A/H3N8) segment 3 (PA) 3685.2 0.000000e+00 2100/2152 (97%) EPI704322 A/duck/Mongolia/173/2015 (A/H3N8) segment 3 (PA) 3685.2 0.000000e+00 2100/2152 (97%) EPI476088 A/pink-footed goose/Iceland/0987/2011 (A/H6N8) segment 3 (PA) 3679.6 0.000000e+00 2101/2154 (97%) EPI476065 A/greylag goose/Iceland/0926/2011 (A/H6N8) segment 3 (PA) 3679.6 0.000000e+00 2101/2154 (97%) EPI475923 A/greylag goose/Iceland/0921/2011 (A/H6N8) segment 3 (PA) 3679.6 0.000000e+00 2101/2154 (97%) EPI1006647 A/Anseriformes/Anhui/L25/2014 (A/H1N1) segment 3 (PA) 3674.1 0.000000e+00 2099/2153 (97%) EPI965541 A/duck/Bangladesh/27042/2015 (A/H7N9) segment 3 (PA) 3674.1 0.000000e+00 2098/2152 (97%) EPI965406 A/duck/Bangladesh/26980/2015 (A/H7N9) segment 3 (PA) 3674.1 0.000000e+00 2098/2152 (97%) EPI925976 A/pintail/Chany/198/2016 (A/H3N8) segment 3 (PA) 3674.1 0.000000e+00 2098/2152 (97%) EPI925960 A/teal/Chany/135/2016 (A/H3N8) segment 3 (PA) 3674.1 0.000000e+00 2098/2152 (97%) EPI476086 A/greylag goose/Iceland/0976/2011 (A/H6N8) segment 3 (PA) 3674.1 0.000000e+00 2100/2154 (97%) EPI476085 A/greylag goose/Iceland/0961/2011 (A/H6N8) segment 3 (PA) 3674.1 0.000000e+00 2100/2154 (97%) EPI475922 A/greylag goose/Iceland/0911/2011 (A/H6N8) segment 3 (PA) 3674.1 0.000000e+00 2100/2154 (97%) EPI538458 A/common teal/Mongolia/1920/2011 (A/H4N6) segment 3 (PA) 3672.3 0.000000e+00 2080/2126 (97%) EPI969334 A/wild bird/Korea/SK14/2014 (A/H1N1) segment 3 (PA) 3668.6 0.000000e+00 2098/2153 (97%) EPI965516 A/duck/Bangladesh/26992/2015 (A/H7N9) segment 3 (PA) 3668.6 0.000000e+00 2097/2152 (97%) EPI942184 A/duck/Hubei/ZYSYG15/2015 (A/H6N2) segment 3 (PA) 3668.6 0.000000e+00 2097/2152 (97%) EPI942183 A/duck/Hubei/ZYSYG14/2015 (A/H6N2) segment 3 (PA) 3668.6 0.000000e+00 2097/2152 (97%) EPI942182 A/duck/Hubei/ZYSYG1/2015 (A/H6N2) segment 3 (PA) 3668.6 0.000000e+00 2097/2152 (97%) EPI925968 A/mallard/Chany/185/2016 (A/H3N8) segment 3 (PA) 3668.6 0.000000e+00 2097/2152 (97%) EPI692479 A/duck/Hubei/S2114/2012 (A/H4N8) segment 3 (PA) 3668.6 0.000000e+00 2096/2151 (97%) EPI596393 A/muscovy duck/Vietnam/LBM201/2012 (A/H3N2) segment 3 (PA) 3668.6 0.000000e+00 2097/2152 (97%) EPI476087 A/greylag goose/Iceland/0980/2011 (A/H6N8) segment 3 (PA) 3668.6 0.000000e+00 2099/2154 (97%) EPI475921 A/greylag goose/Iceland/1482/2011 (A/H6N8) segment 3 (PA) 3668.6 0.000000e+00 2099/2154 (97%) EPI336009 A/teal/Chany/444/2009 (A/H8N8) segment 3 (PA) 3668.6 0.000000e+00 2098/2153 (97%) EPI1006604 A/Anseriformes/Anhui/S3/2014 (A/H1N1) segment 3 (PA) 3663.0 0.000000e+00 2097/2153 (97%) EPI895321 A/Anser fabalis/China/Anhui/L144/2014 (A/H6N1) segment 3 (PA) 3663.0 0.000000e+00 2097/2153 (97%) EPI895305 A/Anser fabalis/China/Anhui/L63/2014 (A/H6N2) segment 3 (PA) 3663.0 0.000000e+00 2097/2153 (97%) EPI895297 A/Anser fabalis/China/Anhui/L9/2014 (A/H6N2) segment 3 (PA) 3663.0 0.000000e+00 2097/2153 (97%) EPI895281 A/Anser fabalis/China/Anhui/S104/2014 (A/H6N2) segment 3 (PA) 3663.0 0.000000e+00 2098/2154 (97%) EPI895265 A/Anser fabalis/China/Anhui/S45/2014 (A/H6N2) segment 3 (PA) 3663.0 0.000000e+00 2098/2154 (97%) EPI441050 A/muscovy duck/Vietnam/LBM198/2012 (A/H6N2) segment 3 (PA) 3663.0 0.000000e+00 2096/2152 (97%) EPI418270 A/muscovy duck/Vietnam/LBM189/2012 (A/H3N2) segment 3 (PA) 3663.0 0.000000e+00 2096/2152 (97%) EPI222086 A/garganey/Altai/1213/2007 (A/H5N2) segment 3 (PA) 3663.0 0.000000e+00 2096/2152 (97%) EPI222046 A/gadwall/Altai/1202/2007 (A/H5N2) segment 3 (PA) 3663.0 0.000000e+00 2096/2152 (97%) EPI1006661 A/Anseriformes/Anhui/L259/2014 (A/H1N1) segment 3 (PA) 3657.5 0.000000e+00 2097/2154 (97%) EPI475919 A/greylag goose/Iceland/1474/2011 (A/H6N8) segment 3 (PA) 3657.5 0.000000e+00 2097/2154 (97%) EPI387543 A/white-fronted goose/Mongolia/1-125/2008 (A/H3N8) segment 3 (PA) 3657.5 0.000000e+00 2077/2125 (97%) EPI1014810 A/mallard duck/Netherlands/20/2012 (A/H1N1) segment 3 (PA) 3651.9 0.000000e+00 2095/2153 (97%) EPI1006618 A/Anseriformes/Anhui/S107/2014 (A/H1N1) segment 3 (PA) 3651.9 0.000000e+00 2095/2153 (97%) EPI890476 A/mallard duck/Netherlands/10/2012 (A/H6N1) segment 3 (PA) 3651.9 0.000000e+00 2095/2153 (97%) EPI890244 A/mallard duck/Netherlands/37/2011 (A/H1N1) segment 3 (PA) 3651.9 0.000000e+00 2095/2153 (97%) EPI889662 A/mallard duck/Netherlands/7/2012 (A/H1N1) segment 3 (PA) 3651.9 0.000000e+00 2095/2153 (97%) EPI1006654 A/Anseriformes/Anhui/L167/2014 (A/H1N1) segment 3 (PA) 3646.4 0.000000e+00 2092/2151 (97%) EPI895289 A/Anser fabalis/China/Anhui/S148/2014 (A/H6N2) segment 3 (PA) 3646.4 0.000000e+00 2095/2154 (97%) EPI890932 A/mallard duck/Netherlands/5/2013 (A/H1N1) segment 3 (PA) 3646.4 0.000000e+00 2094/2153 (97%) EPI598436 A/duck/Jiangxi/6535/2013 (A/H10N8) segment 3 (PA) 3646.4 0.000000e+00 2092/2151 (97%) EPI598434 A/duck/Jiangxi/6648/2013 (A/H10N8) segment 3 (PA) 3646.4 0.000000e+00 2092/2151 (97%) EPI598433 A/duck/Jiangxi/6645/2013 (A/H10N8) segment 3 (PA) 3646.4 0.000000e+00 2092/2151 (97%) EPI598431 A/duck/Jiangxi/6624/2013 (A/H10N8) segment 3 (PA) 3646.4 0.000000e+00 2092/2151 (97%) EPI598430 A/duck/Jiangxi/6602/2013 (A/H10N8) segment 3 (PA) 3646.4 0.000000e+00 2092/2151 (97%) EPI598428 A/duck/Jiangxi/6568/2013 (A/H10N8) segment 3 (PA) 3646.4 0.000000e+00 2092/2151 (97%) EPI598425 A/duck/Jiangxi/6544/2013 (A/H10N8) segment 3 (PA) 3646.4 0.000000e+00 2092/2151 (97%) EPI598424 A/duck/Jiangxi/6526/2013 (A/H10N8) segment 3 (PA) 3646.4 0.000000e+00 2092/2151 (97%) EPI598423 A/duck/Jiangxi/6515/2013 (A/H10N8) segment 3 (PA) 3646.4 0.000000e+00 2092/2151 (97%) EPI598364 A/duck/Jiangxi/6496/2013 (A/H10N8) segment 3 (PA) 3646.4 0.000000e+00 2092/2151 (97%) EPI598362 A/duck/Jiangxi/6474/2013 (A/H10N8) segment 3 (PA) 3646.4 0.000000e+00 2092/2151 (97%) EPI598361 A/duck/Jiangxi/6460/2013 (A/H10N8) segment 3 (PA) 3646.4 0.000000e+00 2092/2151 (97%) EPI598358 A/duck/Jiangxi/6450/2013 (A/H10N8) segment 3 (PA) 3646.4 0.000000e+00 2092/2151 (97%) EPI1014040 A/mallard duck/Netherlands/10/2013 (A/H4N6) segment 3 (PA) 3640.9 0.000000e+00 2093/2153 (97%) EPI884260 A/mallard/Chany/126K/2014 (A/H5N3) segment 3 (PA) 3640.9 0.000000e+00 2092/2152 (97%) EPI704519 A/duck/Mongolia/518/2015 (A/H10N3) segment 3 (PA) 3640.9 0.000000e+00 2093/2153 (97%) EPI598432 A/duck/Jiangxi/6634/2013 (A/H10N8) segment 3 (PA) 3640.9 0.000000e+00 2091/2151 (97%)
niman Posted January 25, 2018 Author Report Posted January 25, 2018 Descriptions Align Segment-ID Name Score E-Value Identity EPI1144351 A/canada_goose/England/AV58_18OPpoolEP1/2018 (A/H5N6) segment 5 (NP) 2765.6 0.000000e+00 1497/1497 (100%) EPI1144343 A/pochard_duck/England/AVP_18_003254/2018 (A/H5N6) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%) EPI1144335 A/mute_swan/England/AVP_18_001986/2017 (A/H5N6) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%) EPI1131097 A/Black-headed Gull/Netherlands/29/2017 (A/H5N6) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%) EPI1123238 A/Mute Swan/Netherlands/17017377-001/2017 (A/H5N6) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%) EPI1123254 A/Tufted Duck/Netherlands/17017367-007/2017 (A/H5N6) segment 5 (NP) 2754.5 0.000000e+00 1495/1497 (99%) EPI1123230 A/Mute Swan/Netherlands/17017367-012/2017 (A/H5N6) segment 5 (NP) 2754.5 0.000000e+00 1495/1497 (99%) EPI1119871 A/Duck/Netherlands/17017237-001-005/2017 (A/H5N6) segment 5 (NP) 2754.5 0.000000e+00 1495/1497 (99%) EPI1119863 A/Duck/Netherlands/17017236-001-005/2017 (A/H5N6) segment 5 (NP) 2754.5 0.000000e+00 1495/1497 (99%) EPI1131089 A/Great Black-backed Gull/Netherlands/1/2017 (A/H5N6) segment 5 (NP) 2737.9 0.000000e+00 1492/1497 (99%) EPI961450 A/gadwall/Kurgan/2442/2016 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI909453 A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI1117254 A/T_Dk/NL-Werkendam/16014159-001/2016 (A/H5N5) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI1044548 A/mute swan/Kaliningrad/132/2017 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI1019791 A/T_Dk/NL-Werkendam/16014159-002/2016 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI1019783 A/T_Dk/NL-Rotterdam/16014155-001/2016 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI1019775 A/T_Dk/NL-Roggebotsluis/16014462-015/2016 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI1019767 A/T_Dk/NL-Monnickendam/16013865-006-008/2016 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI1019759 A/T_Dk/NL-Almeerder Zand/16014341-003/2016 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI1019751 A/Sea_eagle/NL-Assen/16015398-002/2016 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI1019743 A/P_falcon/NL-Vrouwenpolder (Zeeland)/16015510-001/2016 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI1019695 A/Gull10/NL-Marker Wadden/16014466-014/2016 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI1019687 A/Gull1/NL-Marker Wadden/16014466-011/2016 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI1019679 A/Gull/NL-Marker Wadden/16014466-020/2016 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI1019663 A/Gr_bk_bd_gull/NL-Slootdorp/16014102-005/2016 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI1019655 A/Go/NL-Roggebotsluis/16014462-010/2016 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI1019647 A/G_c_grebe/NL-Monnickendam/16013865-009-010/2016 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI1019479 A/Dk/NL-Rotterdam/16014008-001-005/2016 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI1019407 A/Ch/NL-Den Oever/16014231-001/2016 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI1019383 A/C_Gull/NL-Slootdorp/16014102-003/2016 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI1019367 A/Bl_H_gull/NL-Slootdorp/16014102-002/2016 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI909461 A/chicken/Kalmykia/2643/2016 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI1019839 A/T_Dk/NL-Zeewolde/16013976-005/2016 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI1019831 A/T_Dk/NL-Zeewolde/16013976-004-006/2016 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI1019799 A/T_Dk/NL-Werkendam/16014159-003/2016 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI1019735 A/Mal/NL-Mastenbroek/16015378-002/2016 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI1019719 A/Magpie/NL-Volendam/16014331-002/2016 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI1019703 A/L-bl-ba-gull/NL-Sovon/16014324-014/2016 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI1019623 A/Eur_Wig/NL-Wormer/16016143-002/2016 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI1019615 A/Eur_Wig/NL-West Graftdijk/16015746-003/2016 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI1019607 A/Eur_Wig/NL-Walterswald/16015923-003/2016 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI1019599 A/Eur_Wig/NL-Vianen/16015917-006/2016 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI1019559 A/Eur_Wig/NL-Groningen/16015376-003/2016 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI1019543 A/Eur_Wig/NL-Gouda/16015824-001/2016 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI1019527 A/Eur_Wig/NL-Enumatil-Groningen/16015704-001/2016 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI1019511 A/Eur_Wig/NL-De Waal (Texel)/16014891-004/2016 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI1019503 A/Eur_Wig/NL-De Waal (Texel)/16014891-003/2016 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI1019487 A/Dk/NL-Stolwijk/16016291-016-020/2016 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI1019471 A/Dk/NL-Kamperveen/16016104-001-005/2016 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI1019375 A/Buzzard/NL-Durgerdam/16015100-004/2016 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI954870 A/Mallard/Hungary/1574a/2017 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI954854 A/Mallard/Hungary/1574b/2017 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI954776 A/Common_tern/Hungary/8187/2017 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI942936 A/turkey/England/003778/2017 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI909421 A/chicken/Voronezh/20/2017 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI909413 A/chicken/Voronezh/19/2017 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI909405 A/chicken/Voronezh/18/2017 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI909397 A/long-eared owl/Voronezh/16/2017 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI909389 A/Ural owl/Voronezh/14/2017 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI909381 A/long-eared owl/Voronezh/15/2017 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI906264 A/chicken/Germany-MV/R8790/2016 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI868849 A/turkey/England/052131/2016 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI860394 A/tufted_duck/Germany/AR8444-L01987/2016 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI861394 A/turkey/Germany-SH/R8595/2016 (A/H5N8) segment 5 (NP) 2706.5 0.000000e+00 1486/1497 (99%) EPI1040234 A/chicken/Italy/17VIR3078/2017 (A/H5N8) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%) EPI1019863 A/T_Dk/NL-Zuidoost Beemster/16014148-009/2016 (A/H5N8) segment 5 (NP) 2704.6 0.000000e+00 1487/1498 (99%) EPI1019855 A/T_Dk/NL-Zuidoost Beemster/16014148-002/2016 (A/H5N8) segment 5 (NP) 2704.6 0.000000e+00 1487/1498 (99%) EPI1019847 A/T_Dk/NL-Zeewolde/16013976-006/2016 (A/H5N8) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%) EPI1019727 A/Mal/NL-IJsselmuiden/16015448-002/2016 (A/H5N8) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%) EPI1019711 A/M_Swan/NL-Roggebotsluis/16014462-019/2016 (A/H5N8) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%) EPI1019671 A/Grey_Go/NL-Groot-Ammers/16015901-012/2016 (A/H5N8) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%) EPI1019639 A/Eur_Wig/NL-Zwolle/16015820-002/2016 (A/H5N8) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%) EPI1019631 A/Eur_Wig/NL-Zoeterwoude/16015702-010/2016 (A/H5N8) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%) EPI1019575 A/Eur_Wig/NL-Leidschendam/16015697-007/2016 (A/H5N8) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%) EPI1019567 A/Eur_Wig/NL-Leeuwarden/16015699-002/2016 (A/H5N8) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%) EPI1019463 A/Dk/NL-Biddinghuizen/16015145-021-025/2016 (A/H5N8) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%) EPI1019455 A/Dk/NL-Biddinghuizen/16015083-016-020/2016 (A/H5N8) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%) EPI1019447 A/Dk/NL-Biddinghuizen/16014829-011-015/2016 (A/H5N8) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%) EPI1019439 A/Crow/NL-Oostwoud/16015372-004/2016 (A/H5N8) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%) EPI1019431 A/Ch/NL-Zoeterwoude/16016484-021-025/2016 (A/H5N8) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%) EPI1019423 A/Ch/NL-Rhenen/16016141-006/2016 (A/H5N8) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%) EPI1019399 A/Ch/NL-Boven Leeuwen/16016151-006-010/2016 (A/H5N8) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%) EPI1019391 A/Ch/NL-Abbega/X16015736/2016 (A/H5N8) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%) EPI1019359 A/Bk_swan/NL-Den Oever/16013973-002/2016 (A/H5N8) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%) EPI990779 A/mute swan/Germany-NI/AR1529-L02145/2017 (A/H5N8) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%) EPI990763 A/eurasian wigeon/Germany-NI/AR249-L02143/2017 (A/H5N8) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%) EPI988592 A/turkey/Germany-NI/R9807/2016 (A/H5N8) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%) EPI959332 A/Mew Gull/Netherlands/1/2016 (A/H5N8) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%) EPI954752 A/Peregrine_falcon/Hungary/4882/2017 (A/H5N8) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%) EPI954600 A/turkey/Italy/17VIR1452-22/2017 (A/H5N8) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%) EPI954576 A/chicken/Italy/17VIR653-12/2017 (A/H5N8) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%) EPI954568 A/turkey/Italy/17VIR576-11/2017 (A/H5N8) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%) EPI942944 A/chicken/Wales/000023/2016 (A/H5N8) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%) EPI909437 A/goose/Krasnodar/3144/2017 (A/H5N8) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%) EPI909365 A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%) EPI906263 A/chicken/Germany-SH/R8758/2016 (A/H5N8) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%) EPI888670 A/domestic duck/Germany-MV/R9869/2016 (A/H5N8) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%) EPI860402 A/tufted_duck/Germany/AR8459-L01988/2016 (A/H5N8) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%) EPI859656 A/tufted_duck/Germany/AR8444-L01986/2016 (A/H5N8) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%) EPI1127539 A/mute swan/Shimane/3211A001/2017 (A/H5N6) segment 5 (NP) 2699.1 0.000000e+00 1485/1497 (99%)
niman Posted January 25, 2018 Author Report Posted January 25, 2018 Descriptions Align Segment-ID Name Score E-Value Identity EPI1144354 A/canada_goose/England/AV58_18OPpoolEP1/2018 (A/H5N6) segment 8 (NS) 1496.9 0.000000e+00 812/812 (100%) EPI1144346 A/pochard_duck/England/AVP_18_003254/2018 (A/H5N6) segment 8 (NS) 1491.4 0.000000e+00 810/812 (99%) EPI1131100 A/Black-headed Gull/Netherlands/29/2017 (A/H5N6) segment 8 (NS) 1491.4 0.000000e+00 810/812 (99%) EPI1123231 A/Mute Swan/Netherlands/17017367-012/2017 (A/H5N6) segment 8 (NS) 1491.4 0.000000e+00 810/812 (99%) EPI1119874 A/Duck/Netherlands/17017237-001-005/2017 (A/H5N6) segment 8 (NS) 1491.4 0.000000e+00 810/812 (99%) EPI1119866 A/Duck/Netherlands/17017236-001-005/2017 (A/H5N6) segment 8 (NS) 1491.4 0.000000e+00 810/812 (99%) EPI1144338 A/mute_swan/England/AVP_18_001986/2017 (A/H5N6) segment 8 (NS) 1485.8 0.000000e+00 809/812 (99%) EPI1123255 A/Tufted Duck/Netherlands/17017367-007/2017 (A/H5N6) segment 8 (NS) 1485.8 0.000000e+00 809/812 (99%) EPI1123239 A/Mute Swan/Netherlands/17017377-001/2017 (A/H5N6) segment 8 (NS) 1485.8 0.000000e+00 809/812 (99%) EPI1131092 A/Great Black-backed Gull/Netherlands/1/2017 (A/H5N6) segment 8 (NS) 1469.2 0.000000e+00 806/812 (99%) EPI866979 A/duck/Hungary/60441/2016 (A/H5N8) segment 8 (NS) 1402.7 0.000000e+00 794/812 (97%) EPI1081973 A/goose/Italy/17VIR6358-3/2017 (A/H5N8) segment 8 (NS) 1397.2 0.000000e+00 793/812 (97%) EPI1081921 A/swan/Italy/17VIR7064-1/2017 (A/H5N8) segment 8 (NS) 1397.2 0.000000e+00 793/812 (97%) EPI1032556 A/Mulard_duck/Hungary/59163/2016 (A/H5N8) segment 8 (NS) 1397.2 0.000000e+00 793/812 (97%) EPI1032542 A/Goose/Hungary/64909/2016 (A/H5N8) segment 8 (NS) 1397.2 0.000000e+00 793/812 (97%) EPI1032534 A/Goose/Hungary/63743/2016 (A/H5N8) segment 8 (NS) 1397.2 0.000000e+00 793/812 (97%) EPI1032526 A/Mulard_duck/Hungary/62902/2016 (A/H5N8) segment 8 (NS) 1397.2 0.000000e+00 793/812 (97%) EPI1032518 A/Mulard_duck/Hungary/60369/2016 (A/H5N8) segment 8 (NS) 1397.2 0.000000e+00 793/812 (97%) EPI1032510 A/Goose/Hungary/59763/2016 (A/H5N8) segment 8 (NS) 1397.2 0.000000e+00 793/812 (97%) EPI1032502 A/Goose/Hungary/17985/2017 (A/H5N8) segment 8 (NS) 1397.2 0.000000e+00 793/812 (97%) EPI1032494 A/Goose/Hungary/17580/2017 (A/H5N8) segment 8 (NS) 1397.2 0.000000e+00 793/812 (97%) EPI1032486 A/Goose/Hungary/17051/2017 (A/H5N8) segment 8 (NS) 1397.2 0.000000e+00 793/812 (97%) EPI1032470 A/Goose/Hungary/17261/2017 (A/H5N8) segment 8 (NS) 1397.2 0.000000e+00 793/812 (97%) EPI962038 A/Duck/Hungary/54738/2016 (A/H5N8) segment 8 (NS) 1397.2 0.000000e+00 793/812 (97%) EPI961494 A/shelduck/Italy/17VIR1572-24/2017 (A/H5N8) segment 8 (NS) 1397.2 0.000000e+00 793/812 (97%) EPI959557 A/Rook/Hungary/4975/2017 (A/H5N8) segment 8 (NS) 1397.2 0.000000e+00 793/812 (97%) EPI959533 A/Mute swan/Hungary/6276/2017 (A/H5N8) segment 8 (NS) 1397.2 0.000000e+00 793/812 (97%) EPI956131 A/chicken/Germany-NI/R11406/2016 (A/H5N8) segment 8 (NS) 1397.2 0.000000e+00 793/812 (97%) EPI954863 A/White_fronted_goose/Hungary/801/2017 (A/H5N8) segment 8 (NS) 1397.2 0.000000e+00 793/812 (97%) EPI954831 A/Mute swan/Hungary/3137/2017 (A/H5N8) segment 8 (NS) 1397.2 0.000000e+00 793/812 (97%) EPI954815 A/GuineaFowl/Hungary/596/2017 (A/H5N8) segment 8 (NS) 1397.2 0.000000e+00 793/812 (97%) EPI954729 A/Mute swan/Hungary/3513/2017 (A/H5N8) segment 8 (NS) 1397.2 0.000000e+00 793/812 (97%) EPI954721 A/Mute swan/Hungary/3139/2017 (A/H5N8) segment 8 (NS) 1397.2 0.000000e+00 793/812 (97%) EPI954673 A/Greylag_goose/Hungary/1941/2017 (A/H5N8) segment 8 (NS) 1397.2 0.000000e+00 793/812 (97%) EPI954633 A/Harris Hawk/Hungary/120/2017 (A/H5N8) segment 8 (NS) 1397.2 0.000000e+00 793/812 (97%) EPI954601 A/turkey/Italy/17VIR1452-22/2017 (A/H5N8) segment 8 (NS) 1397.2 0.000000e+00 793/812 (97%) EPI954577 A/chicken/Italy/17VIR653-12/2017 (A/H5N8) segment 8 (NS) 1397.2 0.000000e+00 793/812 (97%) EPI909464 A/chicken/Kalmykia/2643/2016 (A/H5N8) segment 8 (NS) 1397.2 0.000000e+00 793/812 (97%) EPI909456 A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 8 (NS) 1397.2 0.000000e+00 793/812 (97%) EPI888092 A/wigeon/Italy/17VIR57-3/2017 (A/H5N8) segment 8 (NS) 1397.2 0.000000e+00 793/812 (97%) EPI866975 A/chicken/Hungary/59048/2016 (A/H5N8) segment 8 (NS) 1397.2 0.000000e+00 793/812 (97%) EPI860533 A/duck/Hungary/55191/2016 (A/H5N8) segment 8 (NS) 1397.2 0.000000e+00 793/812 (97%) EPI860520 A/goose/Hungary/55128/2016 (A/H5N8) segment 8 (NS) 1397.2 0.000000e+00 793/812 (97%) EPI860517 A/Mulard_duck/Hungary/54494/2016 (A/H5N8) segment 8 (NS) 1397.2 0.000000e+00 793/812 (97%) EPI1126358 A/mute swan/Czech Republic/1060-17/2017 (H5N8) (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI1119075 A/spoonbill/Taiwan/DB645/2017 (A/H5N6) segment 8 (NS) 1391.6 0.000000e+00 793/813 (97%) EPI1093385 A/mute swan/Czech Republic/1058-17/2017 (H5N8) (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI1085346 A/goose/Czech Republic/136-17_1/2017 (H5N8) (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI1081898 A/turkey/Czech Republic/38-17_1/2017 (H5N8) (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI1081886 A/mute swan/Czech Republic/54-17_2/2017 (H5N8) (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI1045979 A/unknown/Tatarstan/94/2017 (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI1045621 A/chicken/Tatarstan/88/2017 (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI1045599 A/chicken/Shchyolkovo/47/2017 (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI1040235 A/chicken/Italy/17VIR3078/2017 (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI1040230 A/turkey/Italy/17VIR5878-3/2017 (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI1032478 A/Goose/Hungary/15729/2017 (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI1019848 A/T_Dk/NL-Zeewolde/16013976-006/2016 (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI1019824 A/T_Dk/NL-Zeewolde/16013976-004/2016 (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI1019816 A/T_Dk/NL-Zeewolde/16013976-001-003/2016 (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI1019808 A/T_Dk/NL-Zeewolde/16013976-001/2016 (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI1019760 A/T_Dk/NL-Almeerder Zand/16014341-003/2016 (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI1019720 A/Magpie/NL-Volendam/16014331-002/2016 (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI1019712 A/M_Swan/NL-Roggebotsluis/16014462-019/2016 (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI1019704 A/L-bl-ba-gull/NL-Sovon/16014324-014/2016 (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI1019696 A/Gull10/NL-Marker Wadden/16014466-014/2016 (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI1019632 A/Eur_Wig/NL-Zoeterwoude/16015702-010/2016 (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI1019624 A/Eur_Wig/NL-Wormer/16016143-002/2016 (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI1019616 A/Eur_Wig/NL-West Graftdijk/16015746-003/2016 (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI1019600 A/Eur_Wig/NL-Vianen/16015917-006/2016 (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI1019576 A/Eur_Wig/NL-Leidschendam/16015697-007/2016 (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI1019544 A/Eur_Wig/NL-Gouda/16015824-001/2016 (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI1019528 A/Eur_Wig/NL-Enumatil-Groningen/16015704-001/2016 (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI1019512 A/Eur_Wig/NL-De Waal (Texel)/16014891-004/2016 (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI1019504 A/Eur_Wig/NL-De Waal (Texel)/16014891-003/2016 (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI1019440 A/Crow/NL-Oostwoud/16015372-004/2016 (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI1019432 A/Ch/NL-Zoeterwoude/16016484-021-025/2016 (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI1019376 A/Buzzard/NL-Durgerdam/16015100-004/2016 (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI1007679 A/peacock/Belgium/1017/2017 (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI969258 A/Tufted Duck/Switzerland/V237/2016 (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI962059 A/Turkey/Hungary/53136/2016 (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI962048 A/Duck/Hungary/55764/2016 (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI961471 A/chicken/Sergiyev Posad/39/2017 (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI961463 A/chicken/Sergiyev Posad/38/2017 (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI961453 A/gadwall/Kurgan/2442/2016 (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI956122 A/Goose/Hungary/59712/2016 (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI954839 A/Mallard/Hungary/5821/2017 (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI954823 A/Chicken/Hungary/1751/2017 (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI954745 A/Chicken/Hungary/2496/2017 (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI954713 A/Mute swan/Hungary/2825/2017 (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI954705 A/Mute swan/Hungary/2508/2017 (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI954649 A/Duck/Hungary/984/2017 (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI954585 A/turkey/Italy/17VIR973-2/2017 (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI954569 A/turkey/Italy/17VIR576-11/2017 (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI953757 A/mallard/Hungary/57857/2016 (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI942947 A/chicken/Wales/000023/2016 (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI916717 A/turkey/Germany-SH/R8595/2016 (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI909470 A/chicken/Astrakhan/3131/2016 (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI909448 A/mute swan/Krasnodar/25/2017 (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI909440 A/goose/Krasnodar/3144/2017 (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%) EPI909424 A/chicken/Voronezh/20/2017 (A/H5N8) segment 8 (NS) 1391.6 0.000000e+00 792/812 (97%)
niman Posted January 25, 2018 Author Report Posted January 25, 2018 Isolate detail Isolate name: A/pochard_duck/England/AVP_18_003254/2018 Isolate ID: EPI_ISL_292224 Passage details/history: Egg Passage 1 Type: A / H5N6 Lineage: Sample information Collection date: 2018-01-10 Host Aythya ferina Additional host information: Domestic status: Wild Is vaccinated: N Location: United Kingdom / Dorset Additional location information: Abbotsbury Health status: Dead Specimen source: Cloacal swab Strain or commercial product name used for vaccination: Institute information Originating lab: Animal and Plant Health Agency (APHA) Sample ID given by the sample provider: AVP-18-003254 Address: Animal and Plant Health Agency (APHA) Virology Department Woodham Lane New Haw, Addlestone, Surrey KT15 3NB United Kingdom Submitting lab: Animal and Plant Health Agency (APHA) Sample ID given by the submitting laboratory: AVP-18-003254 Authors: Seekings, James; Ellis, Richard; Brookes, Sharon M; Reid, Scott; Essen, Stephen; Lewis, Nicola; Brown, Ian H Address: Animal and Plant Health Agency (APHA) Virology Department Woodham Lane New Haw, Addlestone, Surrey KT15 3NB United Kingdom Publication Publication In vivo antiviral resistance Phenotype Genotype Unspecified Antiviral resistance tested by experimental procedures Adamantanes: Unknown Oseltamivir: Unknown Zanamivir: Unknown Peramivir: Unknown Other: Unknown Additional information Antigenic characterization: Note: Sequence segment identifier length accession # INSDC Sequence PB2 A/pochard_duck/England/AVP_18_003254/2018 2341 EPI1144339 PB1 A/pochard_duck/England/AVP_18_003254/2018 2341 EPI1144340 PA A/pochard_duck/England/AVP_18_003254/2018 2233 EPI1144341 HA A/pochard_duck/England/AVP_18_003254/2018 1776 EPI1144342 NP A/pochard_duck/England/AVP_18_003254/2018 1565 EPI1144343 NA A/pochard_duck/England/AVP_18_003254/2018 1465 EPI1144344 MP A/pochard_duck/England/AVP_18_003254/2018 1027 EPI1144345 NS A/pochard_duck/England/AVP_18_003254/2018 890 EPI1144346 Submitter information Submitter: Seekings, James Submission Date: 2018-01-19 Last modifier: Seekings, James Last modified: 2018-01-19 Address: Animal and Plant Health Agency (APHA) Virology Department Woodham Lane New Haw, Addlestone, Surrey KT15 3NB United Kingdom
niman Posted January 25, 2018 Author Report Posted January 25, 2018 Descriptions Align Segment-ID Name Score E-Value Identity EPI1144342 A/pochard_duck/England/AVP_18_003254/2018 (A/H5N6) segment 4 (HA) 3147.8 0.000000e+00 1704/1704 (100%) EPI1144350 A/canada_goose/England/AV58_18OPpoolEP1/2018 (A/H5N6) segment 4 (HA) 3131.2 0.000000e+00 1701/1704 (99%) EPI1144334 A/mute_swan/England/AVP_18_001986/2017 (A/H5N6) segment 4 (HA) 3125.7 0.000000e+00 1700/1704 (99%) EPI1123261 A/Tufted Duck/Netherlands/17017367-007/2017 (A/H5N6) segment 4 (HA) 3120.1 0.000000e+00 1699/1704 (99%) EPI1119870 A/Duck/Netherlands/17017237-001-005/2017 (A/H5N6) segment 4 (HA) 3114.6 0.000000e+00 1698/1704 (99%) EPI1119862 A/Duck/Netherlands/17017236-001-005/2017 (A/H5N6) segment 4 (HA) 3114.6 0.000000e+00 1698/1704 (99%) EPI1131096 A/Black-headed Gull/Netherlands/29/2017 (A/H5N6) segment 4 (HA) 3109.0 0.000000e+00 1697/1704 (99%) EPI1123245 A/Mute Swan/Netherlands/17017377-001/2017 (A/H5N6) segment 4 (HA) 3109.0 0.000000e+00 1697/1704 (99%) EPI1123237 A/Mute Swan/Netherlands/17017367-012/2017 (A/H5N6) segment 4 (HA) 3109.0 0.000000e+00 1697/1704 (99%) EPI1131088 A/Great Black-backed Gull/Netherlands/1/2017 (A/H5N6) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI1019638 A/Eur_Wig/NL-Zoeterwoude/16015702-010/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI1019590 A/Eur_Wig/NL-Reeuwijk/16015903-003/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI1019582 A/Eur_Wig/NL-Leidschendam/16015697-007/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI1019550 A/Eur_Wig/NL-Gouda/16015824-001/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI1019518 A/Eur_Wig/NL-De Waal (Texel)/16014891-004/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI1019510 A/Eur_Wig/NL-De Waal (Texel)/16014891-003/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI943320 A/pochard_duck/England/SA12_157809/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI1019734 A/Mal/NL-IJsselmuiden/16015448-002/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI1019678 A/Grey_Go/NL-Groot-Ammers/16015901-012/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI1019646 A/Eur_Wig/NL-Zwolle/16015820-002/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI1019622 A/Eur_Wig/NL-West Graftdijk/16015746-003/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI1019606 A/Eur_Wig/NL-Vianen/16015917-006/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI1019430 A/Ch/NL-Rhenen/16016141-006/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI1019406 A/Ch/NL-Boven Leeuwen/16016151-006-010/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI959413 A/Eurasian Wigeon/Netherlands/4/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI942943 A/chicken/Wales/000023/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI1019478 A/Dk/NL-Kamperveen/16016104-001-005/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI1019438 A/Ch/NL-Zoeterwoude/16016484-021-025/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI954583 A/chicken/Italy/17VIR653-12/2017 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI868848 A/turkey/England/052131/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI1019630 A/Eur_Wig/NL-Wormer/16016143-002/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI1019614 A/Eur_Wig/NL-Walterswald/16015923-003/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI1007675 A/peacock/Belgium/1017/2017 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI990770 A/eurasian wigeon/Germany-NI/AR249-L02143/2017 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI954877 A/Mallard/Hungary/1574a/2017 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI954861 A/Mallard/Hungary/1574b/2017 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI954607 A/turkey/Italy/17VIR1452-22/2017 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI954575 A/turkey/Italy/17VIR576-11/2017 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI954559 A/swan/Italy/17VIR537-2/2017 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI869687 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 4 (HA) 3033.3 0.000000e+00 1683/1704 (98%) EPI1045611 A/chicken/Rostov/44/2017 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI1019534 A/Eur_Wig/NL-Enumatil-Groningen/16015704-001/2016 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI1019526 A/Eur_Wig/NL-Drieborg (Dollard)/16015513-001/2016 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI990794 A/greylag goose/Germany-NI/AR1395-L02144/2017 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI969347 A/turkey/Germany-BB/R377ff/2017 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI961449 A/gadwall/Kurgan/2442/2016 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI954813 A/Greylag_goose/Hungary/320/2017 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI942935 A/turkey/England/003778/2017 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI909452 A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI909444 A/mute swan/Krasnodar/25/2017 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI869931 A/turkey/Poland/83/2016 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI869930 A/turkey/Poland/78/2016 (A/H5N8) segment 4 (HA) 3027.8 0.000000e+00 1682/1704 (98%) EPI1019718 A/M_Swan/NL-Roggebotsluis/16014462-019/2016 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI1019558 A/Eur_Wig/NL-Greonterp/16015653-001/2016 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI1019494 A/Dk/NL-Stolwijk/16016291-016-020/2016 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI1019398 A/Ch/NL-Abbega/X16015736/2016 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI1007667 A/chicken/Belgium/807/2017 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI990802 A/greylag goose/Germany-NI/AR703-L02138/2017 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI931145 A/duck/Czech Republic/1467-17/2017 (H5N8) (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI916604 A/bronze turkey/Czech Republic/1414-17/2017 (H5N8) (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI909436 A/goose/Krasnodar/3144/2017 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI859650 A/wild duck/Germany-BW/R8455/2016 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI907346 A/domestic duck/Germany-BB/R681ff/2017 (A/H5N8) segment 4 (HA) 3022.2 0.000000e+00 1680/1702 (98%) EPI1021106 A/mute swan/Czech Republic/1296-17_1/2017 (H5N8) (A/H5N8) segment 4 (HA) 3020.4 0.000000e+00 1681/1704 (98%) EPI1019766 A/T_Dk/NL-Almeerder Zand/16014341-003/2016 (A/H5N8) segment 4 (HA) 3020.4 0.000000e+00 1681/1704 (98%) EPI969254 A/Tufted Duck/Switzerland/V237/2016 (A/H5N8) segment 4 (HA) 3020.4 0.000000e+00 1681/1704 (98%) EPI931207 A/turkey/Germany-BB/R234ff/2017 (A/H5N8) segment 4 (HA) 3020.4 0.000000e+00 1681/1704 (98%) EPI909428 A/turkey/Rostov/11/2017 (A/H5N8) segment 4 (HA) 3020.4 0.000000e+00 1681/1704 (98%) EPI909404 A/chicken/Voronezh/18/2017 (A/H5N8) segment 4 (HA) 3020.4 0.000000e+00 1681/1704 (98%) EPI909396 A/long-eared owl/Voronezh/16/2017 (A/H5N8) segment 4 (HA) 3020.4 0.000000e+00 1681/1704 (98%) EPI909388 A/Ural owl/Voronezh/14/2017 (A/H5N8) segment 4 (HA) 3020.4 0.000000e+00 1681/1704 (98%) EPI909380 A/long-eared owl/Voronezh/15/2017 (A/H5N8) segment 4 (HA) 3020.4 0.000000e+00 1681/1704 (98%) EPI888088 A/wigeon/Italy/17VIR57-3/2017 (A/H5N8) segment 4 (HA) 3020.4 0.000000e+00 1681/1704 (98%) EPI869940 A/herring gull/Poland/84/2016 (A/H5N8) segment 4 (HA) 3020.4 0.000000e+00 1681/1704 (98%) EPI869936 A/chicken/Kalmykia/2661/2016 (A/H5N8) segment 4 (HA) 3020.4 0.000000e+00 1681/1704 (98%) EPI861011 A/turkey/Germany-SH/R8595/2016 (A/H5N8) segment 4 (HA) 3020.4 0.000000e+00 1681/1704 (98%) EPI860401 A/tufted_duck/Germany/AR8459-L01988/2016 (A/H5N8) segment 4 (HA) 3020.4 0.000000e+00 1681/1704 (98%) EPI859653 A/tufted_duck/Germany/AR8444-L01986/2016 (A/H5N8) segment 4 (HA) 3020.4 0.000000e+00 1681/1704 (98%) EPI859212 A/tufted_duck/Germany-SH/R8446/2016 (A/H5N8) segment 4 (HA) 3020.4 0.000000e+00 1681/1704 (98%) EPI1040223 A/chicken/Italy/17VIR3078/2017 (A/H5N8) segment 4 (HA) 3016.7 0.000000e+00 1680/1704 (98%) EPI909364 A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 4 (HA) 3016.7 0.000000e+00 1680/1704 (98%) EPI1061371 A/chicken/Belgium/5990/2017 (A/H5N8) segment 4 (HA) 3014.9 0.000000e+00 1680/1704 (98%) EPI1019878 A/Teal/NL-Ferwert/16015273-013/2016 (A/H5N8) segment 4 (HA) 3014.9 0.000000e+00 1680/1704 (98%) EPI1019870 A/T_Dk/NL-Zuidoost Beemster/16014148-009/2016 (A/H5N8) segment 4 (HA) 3014.9 0.000000e+00 1680/1704 (98%) EPI1019862 A/T_Dk/NL-Zuidoost Beemster/16014148-002/2016 (A/H5N8) segment 4 (HA) 3014.9 0.000000e+00 1680/1704 (98%) EPI1019790 A/T_Dk/NL-Rotterdam/16014155-001/2016 (A/H5N8) segment 4 (HA) 3014.9 0.000000e+00 1680/1704 (98%) EPI1019782 A/T_Dk/NL-Roggebotsluis/16014462-015/2016 (A/H5N8) segment 4 (HA) 3014.9 0.000000e+00 1680/1704 (98%) EPI1019774 A/T_Dk/NL-Monnickendam/16013865-006-008/2016 (A/H5N8) segment 4 (HA) 3014.9 0.000000e+00 1680/1704 (98%) EPI1019758 A/Sea_eagle/NL-Assen/16015398-002/2016 (A/H5N8) segment 4 (HA) 3014.9 0.000000e+00 1680/1704 (98%) EPI1019750 A/P_falcon/NL-Vrouwenpolder (Zeeland)/16015510-001/2016 (A/H5N8) segment 4 (HA) 3014.9 0.000000e+00 1680/1704 (98%) EPI1019726 A/Magpie/NL-Volendam/16014331-002/2016 (A/H5N8) segment 4 (HA) 3014.9 0.000000e+00 1680/1704 (98%) EPI1019710 A/L-bl-ba-gull/NL-Sovon/16014324-014/2016 (A/H5N8) segment 4 (HA) 3014.9 0.000000e+00 1680/1704 (98%) EPI1019702 A/Gull10/NL-Marker Wadden/16014466-014/2016 (A/H5N8) segment 4 (HA) 3014.9 0.000000e+00 1680/1704 (98%) EPI1019670 A/Gr_bk_bd_gull/NL-Slootdorp/16014102-005/2016 (A/H5N8) segment 4 (HA) 3014.9 0.000000e+00 1680/1704 (98%) EPI1019542 A/Eur_Wig/NL-Ferwert/16015273-002/2016 (A/H5N8) segment 4 (HA) 3014.9 0.000000e+00 1680/1704 (98%) EPI1019446 A/Crow/NL-Oostwoud/16015372-004/2016 (A/H5N8) segment 4 (HA) 3014.9 0.000000e+00 1680/1704 (98%) EPI1019382 A/Buzzard/NL-Durgerdam/16015100-004/2016 (A/H5N8) segment 4 (HA) 3014.9 0.000000e+00 1680/1704 (98%) EPI954783 A/Common_tern/Hungary/8187/2017 (A/H5N8) segment 4 (HA) 3014.9 0.000000e+00 1680/1704 (98%) EPI954671 A/Duck/Hungary/1588/2017 (A/H5N8) segment 4 (HA) 3014.9 0.000000e+00 1680/1704 (98%) EPI922508 A/chicken/Germany-NI/R11406/2016 (A/H5N8) segment 4 (HA) 3014.9 0.000000e+00 1680/1704 (98%)
niman Posted January 25, 2018 Author Report Posted January 25, 2018 Descriptions Align Segment-ID Name Score E-Value Identity EPI1144344 A/pochard_duck/England/AVP_18_003254/2018 (A/H5N6) segment 6 (NA) 2603.0 0.000000e+00 1409/1409 (100%) EPI1144352 A/canada_goose/England/AV58_18OPpoolEP1/2018 (A/H5N6) segment 6 (NA) 2592.0 0.000000e+00 1407/1409 (99%) EPI1123260 A/Tufted Duck/Netherlands/17017367-007/2017 (A/H5N6) segment 6 (NA) 2592.0 0.000000e+00 1407/1409 (99%) EPI1123244 A/Mute Swan/Netherlands/17017377-001/2017 (A/H5N6) segment 6 (NA) 2586.4 0.000000e+00 1406/1409 (99%) EPI1123236 A/Mute Swan/Netherlands/17017367-012/2017 (A/H5N6) segment 6 (NA) 2586.4 0.000000e+00 1406/1409 (99%) EPI1119872 A/Duck/Netherlands/17017237-001-005/2017 (A/H5N6) segment 6 (NA) 2586.4 0.000000e+00 1406/1409 (99%) EPI1119864 A/Duck/Netherlands/17017236-001-005/2017 (A/H5N6) segment 6 (NA) 2586.4 0.000000e+00 1406/1409 (99%) EPI1144336 A/mute_swan/England/AVP_18_001986/2017 (A/H5N6) segment 6 (NA) 2580.9 0.000000e+00 1405/1409 (99%) EPI1131098 A/Black-headed Gull/Netherlands/29/2017 (A/H5N6) segment 6 (NA) 2560.6 0.000000e+00 1390/1392 (99%) EPI1131090 A/Great Black-backed Gull/Netherlands/1/2017 (A/H5N6) segment 6 (NA) 2551.3 0.000000e+00 1395/1402 (99%) EPI1129918 A/Black-headed Gull/Netherlands/29/2017 (A/H5N6) segment 6 (NA) 2462.7 0.000000e+00 1337/1339 (99%) EPI1122895 A/chicken/Greece/39_2017b/2017 (A/H5N6) segment 6 (NA) 2442.4 0.000000e+00 1380/1409 (97%) EPI1122887 A/chicken/Greece/39_2017a/2017 (A/H5N6) segment 6 (NA) 2438.7 0.000000e+00 1379/1409 (97%) EPI1122879 A/chicken/Greece/39_2017/2017 (A/H5N6) segment 6 (NA) 2438.7 0.000000e+00 1379/1409 (97%) EPI1129917 A/Great Black-backed Gull/Netherlands/1/2017 (A/H5N6) segment 6 (NA) 2403.6 0.000000e+00 1315/1322 (99%) EPI1119073 A/spoonbill/Taiwan/DB645/2017 (A/H5N6) segment 6 (NA) 2398.1 0.000000e+00 1370/1406 (97%) EPI1127540 A/mute swan/Shimane/3211A001/2017 (A/H5N6) segment 6 (NA) 2392.5 0.000000e+00 1371/1409 (97%) EPI1011098 A/barnacle goose/Netherlands/2/2014 (A/H3N6) segment 6 (NA) 2381.5 0.000000e+00 1371/1411 (97%) EPI1036189 A/duck/Moscow/4652/2011 (A/H4N6) segment 6 (NA) 2300.2 0.000000e+00 1356/1411 (96%) EPI890326 A/mallard duck/Netherlands/19/2012 (A/H4N6) segment 6 (NA) 2281.7 0.000000e+00 1353/1411 (95%) EPI1036196 A/duck/Moscow/4781/2012 (A/H4N6) segment 6 (NA) 2276.2 0.000000e+00 1352/1411 (95%) EPI1145199 A/teal/Croatia/86-25/2012 (A/H4N6) segment 6 (NA) 2270.7 0.000000e+00 1351/1411 (95%) EPI891032 A/mallard duck/Netherlands/30/2014 (A/H4N6) segment 6 (NA) 2220.8 0.000000e+00 1343/1412 (95%) EPI1133993 A/duck/Mongolia/262/2011 (A/H4N6) segment 6 (NA) 2215.3 0.000000e+00 1343/1413 (95%) EPI823917 A/teal/Chany Lake/106_ cloaca/2012 (A/H4N6) segment 6 (NA) 2215.3 0.000000e+00 1343/1413 (95%) EPI823909 A/teal/Chany Lake/104_ feather/2012 (A/H4N6) segment 6 (NA) 2215.3 0.000000e+00 1343/1413 (95%) EPI823901 A/teal/Chany Lake/104_cloaca/2012 (A/H4N6) segment 6 (NA) 2215.3 0.000000e+00 1343/1413 (95%) EPI823790 A/shoveller/Chany Lake/101/2012 (A/H4N6) segment 6 (NA) 2215.3 0.000000e+00 1343/1413 (95%) EPI470232 A/duck/Yunnan/87/2007 (A/H7N6) segment 6 (NA) 2215.3 0.000000e+00 1342/1412 (95%) EPI692466 A/duck/Henan/S1091/2010 (A/H4N6) segment 6 (NA) 2209.7 0.000000e+00 1341/1412 (94%) EPI533781 A/Caspian seal/Russia/T1/2012 (A/H4N6) segment 6 (NA) 2209.7 0.000000e+00 1341/1412 (94%) EPI533775 A/Caspian seal/Russia/1884/2002 (A/H4N6) segment 6 (NA) 2209.7 0.000000e+00 1341/1412 (94%) EPI485322 A/eurasian wigeon/Mongolia/340V/2009 (A/H4N6) segment 6 (NA) 2209.7 0.000000e+00 1341/1412 (94%) EPI692506 A/duck/Hunan/S1012/2009 (A/H4N6) segment 6 (NA) 2198.6 0.000000e+00 1340/1413 (94%) EPI1014700 A/mallard duck/Netherlands/7/2006 (A/H10N6) segment 6 (NA) 2193.1 0.000000e+00 1338/1412 (94%) EPI692346 A/chicken/Hunan/S1267/2010 (A/H4N6) segment 6 (NA) 2193.1 0.000000e+00 1338/1412 (94%) EPI692338 A/chicken/Hunan/S1248/2010 (A/H4N6) segment 6 (NA) 2193.1 0.000000e+00 1338/1412 (94%) EPI414148 A/duck/Jiangsu/4/2010 (A/H3N6) segment 6 (NA) 2193.1 0.000000e+00 1338/1412 (94%) EPI407862 A/Khaki Campbell duck/Karachi/NARC-23963/2010 (A/H4N6) segment 6 (NA) 2189.4 0.000000e+00 1337/1412 (94%) EPI372354 A/teal/Egypt/09888-NAMRU3/2005 (A/H4N6) segment 6 (NA) 2189.4 0.000000e+00 1338/1412 (94%) EPI1013418 A/mallard duck/Netherlands/8/2006 (A/H10N6) segment 6 (NA) 2187.6 0.000000e+00 1337/1412 (94%) EPI395392 A/chicken/India/WB-NIV101006/2009 (A/H4N6) segment 6 (NA) 2187.6 0.000000e+00 1337/1412 (94%) EPI296530 A/mallard/Netherlands/4/2006 (A/H10N6) segment 6 (NA) 2187.6 0.000000e+00 1337/1412 (94%) EPI890683 A/mallard duck/Netherlands/6/2006 (A/H4N6) segment 6 (NA) 2182.0 0.000000e+00 1336/1412 (94%) EPI243479 A/duck/Vietnam/OIE-2454/2009 (A/H4N6) segment 6 (NA) 2182.0 0.000000e+00 1337/1413 (94%) EPI401303 A/duck/Korea/DY104/2007 (A/H4N6) segment 6 (NA) 2176.5 0.000000e+00 1335/1412 (94%) EPI168523 A/common pochard/Aktau/1455/2006 (A/H4N6) segment 6 (NA) 2170.9 0.000000e+00 1335/1413 (94%) EPI168522 A/coot/Aktau/1454/2006 (A/H4N6) segment 6 (NA) 2165.4 0.000000e+00 1335/1414 (94%) EPI513237 A/mallard/Sweden/104925/2009 (A/H4N6) segment 6 (NA) 2159.9 0.000000e+00 1333/1413 (94%) EPI704432 A/duck/Mongolia/769/2015 (A/H4N6) segment 6 (NA) 2154.3 0.000000e+00 1334/1415 (94%) EPI540366 A/duck/Bangladesh/1521/2009 (A/H4N6) segment 6 (NA) 2154.3 0.000000e+00 1332/1413 (94%) EPI513749 A/mallard/Sweden/79978/2008 (A/H4N6) segment 6 (NA) 2148.8 0.000000e+00 1330/1412 (94%) EPI395393 A/chicken/India/WB-NIV101018/2009 (A/H4N6) segment 6 (NA) 2143.2 0.000000e+00 1330/1413 (94%) EPI513568 A/mallard/Sweden/80348/2008 (A/H0) segment 6 (NA) 2137.7 0.000000e+00 1329/1413 (94%) EPI485357 A/ruddy shelduck/Mongolia/592/2010 (A/H8N6) segment 6 (NA) 2137.7 0.000000e+00 1329/1413 (94%) EPI284397 A/mallard/Czech Republic/12652/2007 (A/H4N6) segment 6 (NA) 2137.7 0.000000e+00 1326/1409 (94%) EPI1013677 A/mallard duck/Netherlands/10/2013 (A/H4N6) segment 6 (NA) 2132.2 0.000000e+00 1328/1413 (93%) EPI704293 A/duck/Mongolia/127/2015 (A/H4N6) segment 6 (NA) 2132.2 0.000000e+00 1330/1415 (93%) EPI704269 A/duck/Mongolia/101/2015 (A/H4N6) segment 6 (NA) 2132.2 0.000000e+00 1330/1415 (93%) EPI540374 A/duck/Bangladesh/1283/2008 (A/H4N6) segment 6 (NA) 2132.2 0.000000e+00 1329/1414 (93%) EPI1011235 A/mallard duck/Netherlands/22/2011 (A/H4N6) segment 6 (NA) 2126.6 0.000000e+00 1327/1413 (93%) EPI889824 A/mallard duck/Netherlands/27/2009 (A/H4N6) segment 6 (NA) 2126.6 0.000000e+00 1327/1413 (93%) EPI540358 A/duck/Bangladesh/1766/2010 (A/H4N6) segment 6 (NA) 2126.6 0.000000e+00 1326/1412 (93%) EPI513170 A/mallard/Sweden/105012/2009 (A/H4N6) segment 6 (NA) 2126.6 0.000000e+00 1327/1413 (93%) EPI965451 A/duck/Bangladesh/26974/2015 (A/H3N6) segment 6 (NA) 2121.1 0.000000e+00 1329/1416 (93%) EPI618783 A/mallard/Sweden/93475/2009 (A/H10N6) segment 6 (NA) 2121.1 0.000000e+00 1327/1414 (93%) EPI513546 A/mallard/Sweden/101010/2009 (A/H4N6) segment 6 (NA) 2121.1 0.000000e+00 1326/1413 (93%) EPI513461 A/mallard/Sweden/101632/2009 (A/H4N6) segment 6 (NA) 2121.1 0.000000e+00 1326/1413 (93%) EPI513454 A/mallard/Sweden/101603/2009 (A/H4N6) segment 6 (NA) 2121.1 0.000000e+00 1326/1413 (93%) EPI513433 A/mallard/Sweden/101564/2009 (A/H4N6) segment 6 (NA) 2121.1 0.000000e+00 1326/1413 (93%) EPI513431 A/mallard/Sweden/101785/2009 (A/H4N6) segment 6 (NA) 2121.1 0.000000e+00 1326/1413 (93%) EPI513415 A/mallard/Sweden/101733/2009 (A/H4N6) segment 6 (NA) 2121.1 0.000000e+00 1326/1413 (93%) EPI513408 A/mallard/Sweden/101663/2009 (A/H4N6) segment 6 (NA) 2121.1 0.000000e+00 1326/1413 (93%) EPI513394 A/mallard/Sweden/101654/2009 (A/H4N6) segment 6 (NA) 2121.1 0.000000e+00 1326/1413 (93%) EPI513358 A/mallard/Sweden/101831/2009 (A/H4N6) segment 6 (NA) 2121.1 0.000000e+00 1326/1413 (93%) EPI513341 A/mallard/Sweden/104681/2009 (A/H4N6) segment 6 (NA) 2121.1 0.000000e+00 1326/1413 (93%) EPI513230 A/mallard/Sweden/104839/2009 (A/H4N6) segment 6 (NA) 2121.1 0.000000e+00 1326/1413 (93%) EPI513163 A/mallard/Sweden/105011/2009 (A/H4N6) segment 6 (NA) 2121.1 0.000000e+00 1326/1413 (93%) EPI470233 A/wild waterfowl/Hong Kong/MPM3375/2011 (A/H7N6) segment 6 (NA) 2121.1 0.000000e+00 1325/1412 (93%) EPI461617 A/duck/Hunan/S11893/2012 (A/H4N6) segment 6 (NA) 2121.1 0.000000e+00 1326/1413 (93%) EPI965498 A/duck/Bangladesh/26920/2015 (A/H3N6) segment 6 (NA) 2115.5 0.000000e+00 1328/1416 (93%) EPI965369 A/duck/Bangladesh/26948/2015 (A/H3N6) segment 6 (NA) 2115.5 0.000000e+00 1328/1416 (93%) EPI965295 A/duck/Bangladesh/26918/2015 (A/H3N6) segment 6 (NA) 2115.5 0.000000e+00 1328/1416 (93%) EPI692554 A/duck/Jiangxi/S2443/2012 (A/H4N6) segment 6 (NA) 2115.5 0.000000e+00 1325/1413 (93%) EPI540382 A/duck/Bangladesh/1784/2010 (A/H4N6) segment 6 (NA) 2115.5 0.000000e+00 1324/1412 (93%) EPI540350 A/duck/Bangladesh/1783/2010 (A/H4N6) segment 6 (NA) 2115.5 0.000000e+00 1324/1412 (93%) EPI514901 A/mallard/Sweden/105093/2009 (A/H4N6) segment 6 (NA) 2115.5 0.000000e+00 1325/1413 (93%) EPI513514 A/mallard/Sweden/101524/2009 (A/H4N6) segment 6 (NA) 2115.5 0.000000e+00 1326/1414 (93%) EPI513507 A/mallard/Sweden/101504/2009 (A/H4N6) segment 6 (NA) 2115.5 0.000000e+00 1325/1413 (93%) EPI513493 A/mallard/Sweden/101329/2009 (A/H4N6) segment 6 (NA) 2115.5 0.000000e+00 1325/1413 (93%) EPI513475 A/mallard/Sweden/101642/2009 (A/H4N6) segment 6 (NA) 2115.5 0.000000e+00 1325/1413 (93%) EPI513468 A/mallard/Sweden/101640/2009 (A/H4N6) segment 6 (NA) 2115.5 0.000000e+00 1326/1414 (93%) EPI513424 A/mallard/Sweden/101782/2009 (A/H0) segment 6 (NA) 2115.5 0.000000e+00 1326/1414 (93%) EPI513386 A/mallard/Sweden/102029/2009 (A/H4N6) segment 6 (NA) 2115.5 0.000000e+00 1325/1413 (93%) EPI513379 A/mallard/Sweden/102024/2009 (A/H4N6) segment 6 (NA) 2115.5 0.000000e+00 1325/1413 (93%) EPI513334 A/mallard/Sweden/102157/2009 (A/H4N6) segment 6 (NA) 2115.5 0.000000e+00 1325/1413 (93%) EPI513327 A/mallard/Sweden/102124/2009 (A/H4N6) segment 6 (NA) 2115.5 0.000000e+00 1326/1414 (93%) EPI513320 A/mallard/Sweden/102114/2009 (A/H4N6) segment 6 (NA) 2115.5 0.000000e+00 1325/1413 (93%) EPI513306 A/mallard/Sweden/102045/2009 (A/H4N6) segment 6 (NA) 2115.5 0.000000e+00 1325/1413 (93%) EPI513244 A/mallard/Sweden/104931/2009 (A/H4N6) segment 6 (NA) 2115.5 0.000000e+00 1325/1413 (93%)
niman Posted January 25, 2018 Author Report Posted January 25, 2018 Descriptions Align Segment-ID Name Score E-Value Identity EPI1144353 A/canada_goose/England/AV58_18OPpoolEP1/2018 (A/H5N6) segment 7 (MP) 1794.2 0.000000e+00 971/971 (100%) EPI1144345 A/pochard_duck/England/AVP_18_003254/2018 (A/H5N6) segment 7 (MP) 1794.2 0.000000e+00 971/971 (100%) EPI1144337 A/mute_swan/England/AVP_18_001986/2017 (A/H5N6) segment 7 (MP) 1794.2 0.000000e+00 971/971 (100%) EPI1139717 A/common_pochard/Germany-BY/AR09-L02421/2017 (A/H5N6) segment 7 (MP) 1794.2 0.000000e+00 971/971 (100%) EPI1123256 A/Tufted Duck/Netherlands/17017367-007/2017 (A/H5N6) segment 7 (MP) 1794.2 0.000000e+00 971/971 (100%) EPI1123240 A/Mute Swan/Netherlands/17017377-001/2017 (A/H5N6) segment 7 (MP) 1794.2 0.000000e+00 971/971 (100%) EPI1123232 A/Mute Swan/Netherlands/17017367-012/2017 (A/H5N6) segment 7 (MP) 1794.2 0.000000e+00 971/971 (100%) EPI1119865 A/Duck/Netherlands/17017236-001-005/2017 (A/H5N6) segment 7 (MP) 1794.2 0.000000e+00 971/971 (100%) EPI1119873 A/Duck/Netherlands/17017237-001-005/2017 (A/H5N6) segment 7 (MP) 1788.7 0.000000e+00 970/971 (99%) EPI1131091 A/Great Black-backed Gull/Netherlands/1/2017 (A/H5N6) segment 7 (MP) 1777.6 0.000000e+00 968/971 (99%) EPI1131099 A/Black-headed Gull/Netherlands/29/2017 (A/H5N6) segment 7 (MP) 1740.7 0.000000e+00 946/948 (99%) EPI1085345 A/goose/Czech Republic/136-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1738.8 0.000000e+00 962/972 (98%) EPI1032553 A/Mulard_duck/Hungary/59163/2016 (A/H5N8) segment 7 (MP) 1738.8 0.000000e+00 962/972 (98%) EPI1032527 A/Mulard_duck/Hungary/62902/2016 (A/H5N8) segment 7 (MP) 1738.8 0.000000e+00 962/972 (98%) EPI1032519 A/Mulard_duck/Hungary/60369/2016 (A/H5N8) segment 7 (MP) 1738.8 0.000000e+00 962/972 (98%) EPI1032511 A/Goose/Hungary/59763/2016 (A/H5N8) segment 7 (MP) 1738.8 0.000000e+00 962/972 (98%) EPI1032503 A/Goose/Hungary/17985/2017 (A/H5N8) segment 7 (MP) 1738.8 0.000000e+00 962/972 (98%) EPI1032495 A/Goose/Hungary/17580/2017 (A/H5N8) segment 7 (MP) 1738.8 0.000000e+00 962/972 (98%) EPI1032487 A/Goose/Hungary/17051/2017 (A/H5N8) segment 7 (MP) 1738.8 0.000000e+00 962/972 (98%) EPI1032479 A/Goose/Hungary/15729/2017 (A/H5N8) segment 7 (MP) 1738.8 0.000000e+00 962/972 (98%) EPI975869 A/tawny owl/Germany-SN/R1186/2017 (A/H5N8) segment 7 (MP) 1738.8 0.000000e+00 962/972 (98%) EPI969267 A/chicken/Czech Republic/2644-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1738.8 0.000000e+00 962/972 (98%) EPI962050 A/Duck/Hungary/55764/2016 (A/H5N8) segment 7 (MP) 1738.8 0.000000e+00 962/972 (98%) EPI962039 A/Duck/Hungary/54738/2016 (A/H5N8) segment 7 (MP) 1738.8 0.000000e+00 962/972 (98%) EPI961503 A/turkey/Italy/17VIR1574-1/2017 (A/H5N8) segment 7 (MP) 1738.8 0.000000e+00 962/972 (98%) EPI959534 A/Mute swan/Hungary/6276/2017 (A/H5N8) segment 7 (MP) 1738.8 0.000000e+00 962/972 (98%) EPI959427 A/chicken/Poland/79A/2016 (A/H5N8) segment 7 (MP) 1738.8 0.000000e+00 962/972 (98%) EPI956123 A/Goose/Hungary/59712/2016 (A/H5N8) segment 7 (MP) 1738.8 0.000000e+00 962/972 (98%) EPI954832 A/Mute swan/Hungary/3137/2017 (A/H5N8) segment 7 (MP) 1738.8 0.000000e+00 962/972 (98%) EPI954730 A/Mute swan/Hungary/3513/2017 (A/H5N8) segment 7 (MP) 1738.8 0.000000e+00 962/972 (98%) EPI954722 A/Mute swan/Hungary/3139/2017 (A/H5N8) segment 7 (MP) 1738.8 0.000000e+00 962/972 (98%) EPI954714 A/Mute swan/Hungary/2825/2017 (A/H5N8) segment 7 (MP) 1738.8 0.000000e+00 962/972 (98%) EPI954682 A/Mute swan/Hungary/1955/2017 (A/H5N8) segment 7 (MP) 1738.8 0.000000e+00 962/972 (98%) EPI954650 A/Duck/Hungary/984/2017 (A/H5N8) segment 7 (MP) 1738.8 0.000000e+00 962/972 (98%) EPI954634 A/Harris Hawk/Hungary/120/2017 (A/H5N8) segment 7 (MP) 1738.8 0.000000e+00 962/972 (98%) EPI954594 A/turkey/Italy/17VIR1338-3/2017 (A/H5N8) segment 7 (MP) 1738.8 0.000000e+00 962/972 (98%) EPI953518 A/mallard/Hungary/57857/2016 (A/H5N8) segment 7 (MP) 1738.8 0.000000e+00 962/972 (98%) EPI931199 A/chicken/Czech Republic/1896-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1738.8 0.000000e+00 962/972 (98%) EPI931112 A/mute swan/Czech Republic/879-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1738.8 0.000000e+00 962/972 (98%) EPI930844 A/chicken/Czech Republic/55-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1738.8 0.000000e+00 962/972 (98%) EPI930839 A/mute swan/Czech Republic/54-17_2/2017 (H5N8) (A/H5N8) segment 7 (MP) 1738.8 0.000000e+00 962/972 (98%) EPI866980 A/duck/Hungary/60441/2016 (A/H5N8) segment 7 (MP) 1738.8 0.000000e+00 962/972 (98%) EPI860521 A/goose/Hungary/55128/2016 (A/H5N8) segment 7 (MP) 1738.8 0.000000e+00 962/972 (98%) EPI860516 A/Mulard_duck/Hungary/54494/2016 (A/H5N8) segment 7 (MP) 1738.8 0.000000e+00 962/972 (98%) EPI859202 A/mute_swan/Hungary/51049/2016 (A/H5N8) segment 7 (MP) 1738.8 0.000000e+00 962/972 (98%) EPI1126346 A/mallard/Czech Republic/136-17_2/2017 (H5N8) (A/H5N8) segment 7 (MP) 1735.1 0.000000e+00 961/972 (98%) EPI1116593 A/mute swan/Czech Republic/54-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1735.1 0.000000e+00 961/972 (98%) EPI1087641 A/chicken/Czech Republic/988-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1735.1 0.000000e+00 961/972 (98%) EPI1127018 A/mallard/Czech Republic/1226-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 961/972 (98%) EPI1126383 A/mallard/Czech Republic/1219-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 961/972 (98%) EPI1126370 A/mute swan/Czech Republic/987-17_2/2017 (H5N8) (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 961/972 (98%) EPI1126361 A/mute swan/Czech Republic/1156-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 961/972 (98%) EPI1126360 A/mute swan/Czech Republic/1155-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 961/972 (98%) EPI1126357 A/mute swan/Czech Republic/1060-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 961/972 (98%) EPI1126351 A/mute swan/Czech Republic/967-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 961/972 (98%) EPI1126349 A/mute swan/Czech Republic/572-17_3/2017 (H5N8) (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 961/972 (98%) EPI1117249 A/mute swan/Czech Republic/964-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 961/972 (98%) EPI1081897 A/turkey/Czech Republic/38-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 961/972 (98%) EPI1032471 A/Goose/Hungary/17261/2017 (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 961/972 (98%) EPI1002886 A/black swan/Germany-BW/R1364/2017 (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 961/972 (98%) EPI987885 A/chicken/Republic of Macedonia/AR1167-L02131/2017 (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 961/972 (98%) EPI975870 A/white stork/Germany-TH/R1149/2017 (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 961/972 (98%) EPI972359 A/turkey/Germany-BB/R377ff/2017 (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 961/972 (98%) EPI969264 A/chicken/Czech Republic/2643-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 961/972 (98%) EPI969261 A/mute swan/Czech Republic/1813-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 961/972 (98%) EPI962060 A/Turkey/Hungary/53136/2016 (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 961/972 (98%) EPI961996 A/turkey/Germany-BB/R234ff/2017 (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 961/972 (98%) EPI961530 A/goose/Czech Republic/821-17_2/2017 (H5N8) (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 961/972 (98%) EPI961520 A/chicken/Italy/17VIR1751-3/2017 (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 961/972 (98%) EPI961512 A/chicken/Italy/17VIR1684-2/2017 (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 961/972 (98%) EPI961487 A/mute swan/Czech Republic/581-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 961/972 (98%) EPI961481 A/mute swan/Czech Republic/499-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 961/972 (98%) EPI959558 A/Rook/Hungary/4975/2017 (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 961/972 (98%) EPI959526 A/Mute swan/Hungary/6092/2017 (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 961/972 (98%) EPI959518 A/Cormorant/Hungary/6102/2017 (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 961/972 (98%) EPI959421 A/domestic goose/Poland/33/2016 (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 961/972 (98%) EPI954864 A/White_fronted_goose/Hungary/801/2017 (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 961/972 (98%) EPI954840 A/Mallard/Hungary/5821/2017 (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 961/972 (98%) EPI954824 A/Chicken/Hungary/1751/2017 (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 961/972 (98%) EPI954746 A/Chicken/Hungary/2496/2017 (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 961/972 (98%) EPI954738 A/Mute swan/Hungary/3542/2017 (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 961/972 (98%) EPI954706 A/Mute swan/Hungary/2508/2017 (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 961/972 (98%) EPI954698 A/Mute swan/Hungary/2193/2017 (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 961/972 (98%) EPI954658 A/Goose/Hungary/1030/2017 (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 961/972 (98%) EPI954626 A/Mute swan/Hungary/119/2017 (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 961/972 (98%) EPI954586 A/turkey/Italy/17VIR973-2/2017 (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 961/972 (98%) EPI954534 A/Goose/Hungary/65817/2016 (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 961/972 (98%) EPI931196 A/chicken/Czech Republic/1863-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 961/972 (98%) EPI930842 A/Indian Runner Duck/Czech Republic/749-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 961/972 (98%) EPI919638 A/chicken/Czech Republic/585-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 961/972 (98%) EPI917482 A/mute swan/Czech Republic/722-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 961/972 (98%) EPI916524 A/mallard/Czech Republic/722-17_2/2017 (H5N8) (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 961/972 (98%) EPI916387 A/mute swan/Czech Republic/653-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 961/972 (98%) EPI869812 A/duck/France/161108h/2016 (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 961/972 (98%) EPI861570 A/mute swan/Croatia/70/2016 (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 961/972 (98%) EPI859210 A/domestic_turkey/Hungary/53433/2016 (A/H5N8) segment 7 (MP) 1733.3 0.000000e+00 961/972 (98%) EPI888279 A/turkey/Czech Republic/38-17_5/2017 (H5N8) (A/H5N8) segment 7 (MP) 1731.4 0.000000e+00 960/972 (98%) EPI1126347 A/goose/Czech Republic/197-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1727.7 0.000000e+00 960/972 (98%) EPI1032543 A/Goose/Hungary/64909/2016 (A/H5N8) segment 7 (MP) 1727.7 0.000000e+00 960/972 (98%) EPI1032535 A/Goose/Hungary/63743/2016 (A/H5N8) segment 7 (MP) 1727.7 0.000000e+00 960/972 (98%)
niman Posted January 25, 2018 Author Report Posted January 25, 2018 Descriptions Align Segment-ID Name Score E-Value Identity EPI1144339 A/pochard_duck/England/AVP_18_003254/2018 (A/H5N6) segment 1 (PB2) 4211.5 0.000000e+00 2280/2280 (100%) EPI1123242 A/Mute Swan/Netherlands/17017377-001/2017 (A/H5N6) segment 1 (PB2) 4194.9 0.000000e+00 2277/2280 (99%) EPI1119867 A/Duck/Netherlands/17017237-001-005/2017 (A/H5N6) segment 1 (PB2) 4194.9 0.000000e+00 2277/2280 (99%) EPI1119859 A/Duck/Netherlands/17017236-001-005/2017 (A/H5N6) segment 1 (PB2) 4194.9 0.000000e+00 2277/2280 (99%) EPI1144347 A/canada_goose/England/AV58_18OPpoolEP1/2018 (A/H5N6) segment 1 (PB2) 4191.2 0.000000e+00 2276/2280 (99%) EPI1144331 A/mute_swan/England/AVP_18_001986/2017 (A/H5N6) segment 1 (PB2) 4189.3 0.000000e+00 2276/2280 (99%) EPI1139711 A/common_pochard/Germany-BY/AR09-L02421/2017 (A/H5N6) segment 1 (PB2) 4189.3 0.000000e+00 2276/2280 (99%) EPI1131093 A/Black-headed Gull/Netherlands/29/2017 (A/H5N6) segment 1 (PB2) 4189.3 0.000000e+00 2276/2280 (99%) EPI1123258 A/Tufted Duck/Netherlands/17017367-007/2017 (A/H5N6) segment 1 (PB2) 4189.3 0.000000e+00 2276/2280 (99%) EPI1123234 A/Mute Swan/Netherlands/17017367-012/2017 (A/H5N6) segment 1 (PB2) 4189.3 0.000000e+00 2276/2280 (99%) EPI889820 A/mallard duck/Netherlands/15/2011 (A/H6N8) segment 1 (PB2) 3917.9 0.000000e+00 2227/2280 (97%) EPI889410 A/Eurasian teal/Netherlands/1/2011 (A/H3N8) segment 1 (PB2) 3917.9 0.000000e+00 2227/2280 (97%) EPI889594 A/mallard duck/Netherlands/20/2011 (A/H6N8) segment 1 (PB2) 3906.8 0.000000e+00 2225/2280 (97%) EPI890266 A/greater white-fronted goose/Netherlands/6/2011 (A/H6N8) segment 1 (PB2) 3895.7 0.000000e+00 2223/2280 (97%) EPI1010712 A/white-fronted goose/Netherlands/5/2011 (A/H6N8) segment 1 (PB2) 3884.6 0.000000e+00 2221/2280 (97%) EPI1014087 A/mallard duck/Georgia/11/2011 (A/H1N1) segment 1 (PB2) 3873.5 0.000000e+00 2219/2280 (97%) EPI1013538 A/mallard duck/Netherlands/18/2012 (A/H4N2) segment 1 (PB2) 3873.5 0.000000e+00 2219/2280 (97%) EPI1011210 A/mallard duck/Netherlands/16/2012 (A/H3N2) segment 1 (PB2) 3873.5 0.000000e+00 2219/2280 (97%) EPI618045 A/mallard/Republic of Georgia/12/2011 (A/H10N4) segment 1 (PB2) 3873.5 0.000000e+00 2219/2280 (97%) EPI889776 A/mallard duck/Netherlands/32/2011 (A/H5N2) segment 1 (PB2) 3868.0 0.000000e+00 2219/2281 (97%) EPI677988 A/chicken/Italy/13VIR4527-12/2013 (A/H7N7) segment 1 (PB2) 3862.5 0.000000e+00 2217/2280 (97%) EPI560338 A/Italy/3/2013 (A/H7N7) segment 1 (PB2) 3862.5 0.000000e+00 2217/2280 (97%) EPI678028 A/chicken/Italy/13VIR4541-7/2013 (A/H7N7) segment 1 (PB2) 3858.8 0.000000e+00 2216/2280 (97%) EPI678004 A/chicken/Italy/13VIR4541-32/2013 (A/H7N7) segment 1 (PB2) 3858.8 0.000000e+00 2216/2280 (97%) EPI677996 A/chicken/Italy/13VIR4527-11/2013 (A/H7N7) segment 1 (PB2) 3858.8 0.000000e+00 2216/2280 (97%) EPI678076 A/chicken/Italy/13VIR5051-3/2013 (A/H7N7) segment 1 (PB2) 3856.9 0.000000e+00 2216/2280 (97%) EPI678060 A/chicken/Italy/13VIR4774/2013 (A/H7N7) segment 1 (PB2) 3856.9 0.000000e+00 2216/2280 (97%) EPI678052 A/chicken/Italy/13VIR4603-1/2013 (A/H7N7) segment 1 (PB2) 3856.9 0.000000e+00 2216/2280 (97%) EPI678036 A/chicken/Italy/13VIR4541-8/2013 (A/H7N7) segment 1 (PB2) 3856.9 0.000000e+00 2216/2280 (97%) EPI341793 A/mallard/France/090360/2009 (A/H9N2) segment 1 (PB2) 3856.9 0.000000e+00 2216/2280 (97%) EPI678012 A/chicken/Italy/13VIR4541-33/2013 (A/H7N7) segment 1 (PB2) 3855.1 0.000000e+00 2215/2280 (97%) EPI678068 A/chicken/Italy/13VIR5051-1/2013 (A/H7N7) segment 1 (PB2) 3853.2 0.000000e+00 2215/2280 (97%) EPI891105 A/mallard duck/Netherlands/23/2012 (A/H11N9) segment 1 (PB2) 3851.4 0.000000e+00 2215/2280 (97%) EPI816828 A/turkey/Poland/14/2013 (A/H9N2) segment 1 (PB2) 3851.4 0.000000e+00 2216/2281 (97%) EPI678084 A/chicken/Italy/13VIR5091/2013 (A/H7N7) segment 1 (PB2) 3851.4 0.000000e+00 2215/2280 (97%) EPI678044 A/chicken/Italy/13VIR4541-9/2013 (A/H7N7) segment 1 (PB2) 3851.4 0.000000e+00 2215/2280 (97%) EPI678020 A/chicken/Italy/13VIR4541-34/2013 (A/H7N7) segment 1 (PB2) 3851.4 0.000000e+00 2215/2280 (97%) EPI678092 A/turkey/Italy/13VIR4678-1/2013 (A/H7N7) segment 1 (PB2) 3849.5 0.000000e+00 2214/2280 (97%) EPI1013811 A/mallard duck/Netherlands/10/2013 (A/H4N6) segment 1 (PB2) 3845.8 0.000000e+00 2215/2281 (97%) EPI773762 A/chicken/Netherlands/16007311-037041/2016 (A/H7N9) segment 1 (PB2) 3840.3 0.000000e+00 2213/2280 (97%) EPI617974 A/common Teal/Republic of Georgia/1/2011 (A/H3N8) segment 1 (PB2) 3834.8 0.000000e+00 2213/2281 (97%) EPI774511 A/chicken/Netherlands/15007212/15 (A/H10N7) segment 1 (PB2) 3823.7 0.000000e+00 2210/2280 (96%) EPI718523 A/Anas platyrhynchos/Belgium/17330cls42/2013 (A/H5N2) segment 1 (PB2) 3818.1 0.000000e+00 2209/2280 (96%) EPI617882 A/mallard/Republic of Georgia/13/2011 (A/H6N2) segment 1 (PB2) 3818.1 0.000000e+00 2209/2280 (96%) EPI1036183 A/duck/Moscow/4652/2011 (A/H4N6) segment 1 (PB2) 3814.5 0.000000e+00 2208/2280 (96%) EPI890191 A/mallard duck/Netherlands/30/2014 (A/H4N6) segment 1 (PB2) 3812.6 0.000000e+00 2208/2280 (96%) EPI816836 A/turkey/Poland/08/2014 (A/H9N2) segment 1 (PB2) 3812.6 0.000000e+00 2208/2280 (96%) EPI816844 A/turkey/Poland/09/2014 (A/H9N2) segment 1 (PB2) 3808.9 0.000000e+00 2207/2280 (96%) EPI687184 A/chicken/Scotland/532/2016 (A/H5N1) segment 1 (PB2) 3807.1 0.000000e+00 2200/2270 (96%) EPI1133958 A/duck/Mongolia/27/2011 (A/H3N8) segment 1 (PB2) 3790.4 0.000000e+00 2204/2280 (96%) EPI890883 A/greater white-fronted goose/Netherlands/2/2007 (A/H6N8) segment 1 (PB2) 3779.4 0.000000e+00 2202/2280 (96%) EPI839725 A/chicken/France/150169a/2015 (A/H5N1) segment 1 (PB2) 3773.8 0.000000e+00 2202/2281 (96%) EPI1014358 A/mallard duck/Netherlands/18/2014 (A/H1N1) segment 1 (PB2) 3762.7 0.000000e+00 2199/2280 (96%) EPI174657 A/duck/Hunan/689/2006 (A/H5N1) segment 1 (PB2) 3757.2 0.000000e+00 2198/2280 (96%) EPI221999 A/environment/Hunan/1-8/2007 (A/H5N1) segment 1 (PB2) 3751.7 0.000000e+00 2197/2280 (96%) EPI174670 A/chicken/Hunan/3157/2006 (A/H5N1) segment 1 (PB2) 3746.1 0.000000e+00 2197/2281 (96%) EPI174669 A/chicken/Hubei/3002/2007 (A/H5N1) segment 1 (PB2) 3740.6 0.000000e+00 2195/2280 (96%) EPI174668 A/duck/Hubei/2911/2007 (A/H5N1) segment 1 (PB2) 3740.6 0.000000e+00 2195/2280 (96%) EPI174667 A/chicken/Hubei/2856/2007 (A/H5N1) segment 1 (PB2) 3740.6 0.000000e+00 2195/2280 (96%) EPI174665 A/duck/Hunan/1964/2007 (A/H5N1) segment 1 (PB2) 3740.6 0.000000e+00 2195/2280 (96%) EPI222147 A/lesser kestrel/Heilongjiang/194/2007 (A/H5N1) segment 1 (PB2) 3735.0 0.000000e+00 2194/2280 (96%) EPI484292 A/chicken/Italy/13VIR4527-11/2013 (A/H7N7) segment 1 (PB2) 3731.4 0.000000e+00 2149/2214 (97%) EPI823778 A/environment/Kamchatka/24/2016 (A/H13N8) segment 1 (PB2) 3729.5 0.000000e+00 2193/2280 (96%) EPI823762 A/environment/Kamchatka/23/2016 (A/H13N8) segment 1 (PB2) 3725.8 0.000000e+00 2192/2280 (96%) EPI262682 A/aquatic bird/Korea/w120/2006 (A/H5N2) segment 1 (PB2) 3724.0 0.000000e+00 2193/2281 (96%) EPI262680 A/aquatic bird/Korea/w113/2006 (A/H5N2) segment 1 (PB2) 3724.0 0.000000e+00 2193/2281 (96%) EPI173585 A/swine/Korea/C12/2008 (A/H5N2) segment 1 (PB2) 3724.0 0.000000e+00 2193/2281 (96%) EPI1013684 A/mallard duck/Netherlands/40/2011 (A/H7N1) segment 1 (PB2) 3718.4 0.000000e+00 2192/2281 (96%) EPI1013496 A/mallard duck/Netherlands/48/2011 (A/H7N1) segment 1 (PB2) 3718.4 0.000000e+00 2192/2281 (96%) EPI889596 A/mallard duck/Netherlands/8/2012 (A/H1N1) segment 1 (PB2) 3718.4 0.000000e+00 2191/2280 (96%) EPI839733 A/duck/France/150233/2015 (A/H5N2) segment 1 (PB2) 3718.4 0.000000e+00 2191/2280 (96%) EPI809271 A/pigeon/Egypt/S10409A/2014 (A/H9N2) segment 1 (PB2) 3718.4 0.000000e+00 2193/2282 (96%) EPI262683 A/aquatic bird/Korea/w121/2006 (A/H5N2) segment 1 (PB2) 3718.4 0.000000e+00 2192/2281 (96%) EPI1011215 A/mallard duck/Netherlands/45/2011 (A/H8N1) segment 1 (PB2) 3712.9 0.000000e+00 2191/2281 (96%) EPI890747 A/mallard duck/Netherlands/44/2011 (A/H7N1) segment 1 (PB2) 3712.9 0.000000e+00 2191/2281 (96%) EPI889269 A/mallard duck/Netherlands/31/2012 (A/H7N1) segment 1 (PB2) 3712.9 0.000000e+00 2191/2281 (96%) EPI889248 A/mallard duck/Netherlands/43/2011 (A/H7N1) segment 1 (PB2) 3712.9 0.000000e+00 2191/2281 (96%) EPI839741 A/duck/France/150236/2015 (A/H5N9) segment 1 (PB2) 3712.9 0.000000e+00 2190/2280 (96%) EPI262681 A/aquatic bird/Korea/w114/2006 (A/H5N2) segment 1 (PB2) 3712.9 0.000000e+00 2192/2282 (96%) EPI174662 A/duck/Henan/1652/2006 (A/H5N1) segment 1 (PB2) 3707.3 0.000000e+00 2189/2280 (96%) EPI174660 A/duck/Henan/1647/2006 (A/H5N1) segment 1 (PB2) 3707.3 0.000000e+00 2190/2281 (96%) EPI961485 A/environment/Kamchatka/117/2016 (A/H13N8) segment 1 (PB2) 3701.8 0.000000e+00 2188/2280 (95%) EPI940605 A/guinea fowl/France/150207n/2015 (A/H5N9) segment 1 (PB2) 3701.8 0.000000e+00 2189/2281 (95%) EPI167950 A/long-tailed shrike/Hong Kong/2762/2007 (A/H5N1) segment 1 (PB2) 3698.1 0.000000e+00 2173/2258 (96%) EPI222581 A/scaly-breasted munia/Hong Kong/45/2007 (A/H5N1) segment 1 (PB2) 3696.3 0.000000e+00 2178/2266 (96%) EPI220527 A/environment/Hunan/6-69/2008 (A/H5N1) segment 1 (PB2) 3696.3 0.000000e+00 2187/2280 (95%) EPI809383 A/pigeon/Egypt/S10408B/2014 (A/H9N2) segment 1 (PB2) 3679.6 0.000000e+00 2187/2283 (95%) EPI1087898 A/ Quail /Egypt/1253V/2016 (A/H9N2) segment 1 (PB2) 3646.4 0.000000e+00 2179/2281 (95%) EPI1086370 A/Chicken/Egypt/374V/2016 (A/H9N2) segment 1 (PB2) 3646.4 0.000000e+00 2181/2283 (95%) EPI1006524 A/duck/Guangxi/015D2/2009 (A/H3N2) segment 1 (PB2) 3646.4 0.000000e+00 2178/2280 (95%) EPI167855 A/crested goshawk/Hong Kong/458/2007 (A/H5N1) segment 1 (PB2) 3640.9 0.000000e+00 2141/2226 (96%) EPI316548 A/spot-billed duck/Korea/KNU SYG06/2006 (A/H5N3) segment 1 (PB2) 3591.0 0.000000e+00 2168/2280 (95%) EPI401812 A/green-winged teal/Xianghai/430/2011 (A/H5N2) segment 1 (PB2) 3585.5 0.000000e+00 2167/2280 (95%) EPI534805 A/duck/Zhejiang/D18/2013 (A/H3N3) segment 1 (PB2) 3579.9 0.000000e+00 2166/2280 (95%) EPI534804 A/duck/Zhejiang/D17/2013 (A/H3N3) segment 1 (PB2) 3579.9 0.000000e+00 2166/2280 (95%) EPI534803 A/duck/Zhejiang/D16/2013 (A/H3N3) segment 1 (PB2) 3579.9 0.000000e+00 2166/2280 (95%) EPI534800 A/duck/Zhejiang/D13/2013 (A/H3N2) segment 1 (PB2) 3579.9 0.000000e+00 2166/2280 (95%) EPI534799 A/duck/Zhejiang/D11/2013 (A/H3N2) segment 1 (PB2) 3579.9 0.000000e+00 2166/2280 (95%) EPI469171 A/wild duck/Guangdong/520/2001 (A/H1N9) segment 1 (PB2) 3579.9 0.000000e+00 2166/2280 (95%) EPI99874 A/duck/Denmark/65047/04 (A/H5N2) segment 1 (PB2) 3579.9 0.000000e+00 2166/2280 (95%)
niman Posted January 25, 2018 Author Report Posted January 25, 2018 Descriptions Align Segment-ID Name Score E-Value Identity EPI1144340 A/pochard_duck/England/AVP_18_003254/2018 (A/H5N6) segment 2 (PB1) 4193.0 0.000000e+00 2270/2270 (100%) EPI1144332 A/mute_swan/England/AVP_18_001986/2017 (A/H5N6) segment 2 (PB1) 4176.4 0.000000e+00 2267/2270 (99%) EPI1123259 A/Tufted Duck/Netherlands/17017367-007/2017 (A/H5N6) segment 2 (PB1) 4176.4 0.000000e+00 2267/2270 (99%) EPI1119860 A/Duck/Netherlands/17017236-001-005/2017 (A/H5N6) segment 2 (PB1) 4176.4 0.000000e+00 2267/2270 (99%) EPI1123235 A/Mute Swan/Netherlands/17017367-012/2017 (A/H5N6) segment 2 (PB1) 4170.9 0.000000e+00 2266/2270 (99%) EPI1119868 A/Duck/Netherlands/17017237-001-005/2017 (A/H5N6) segment 2 (PB1) 4170.9 0.000000e+00 2266/2270 (99%) EPI1144348 A/canada_goose/England/AV58_18OPpoolEP1/2018 (A/H5N6) segment 2 (PB1) 4167.2 0.000000e+00 2266/2271 (99%) EPI1131094 A/Black-headed Gull/Netherlands/29/2017 (A/H5N6) segment 2 (PB1) 4165.3 0.000000e+00 2265/2270 (99%) EPI1123243 A/Mute Swan/Netherlands/17017377-001/2017 (A/H5N6) segment 2 (PB1) 4165.3 0.000000e+00 2265/2270 (99%) EPI1139712 A/common_pochard/Germany-BY/AR09-L02421/2017 (A/H5N6) segment 2 (PB1) 4154.2 0.000000e+00 2263/2270 (99%) EPI1131086 A/Great Black-backed Gull/Netherlands/1/2017 (A/H5N6) segment 2 (PB1) 4115.5 0.000000e+00 2256/2270 (99%) EPI909458 A/chicken/Kalmykia/2643/2016 (A/H5N8) segment 2 (PB1) 4060.1 0.000000e+00 2246/2270 (98%) EPI909450 A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 2 (PB1) 4060.1 0.000000e+00 2246/2270 (98%) EPI1019772 A/T_Dk/NL-Monnickendam/16013865-006-008/2016 (A/H5N8) segment 2 (PB1) 4054.5 0.000000e+00 2245/2270 (98%) EPI961447 A/gadwall/Kurgan/2442/2016 (A/H5N8) segment 2 (PB1) 4054.5 0.000000e+00 2245/2270 (98%) EPI1117251 A/T_Dk/NL-Werkendam/16014159-001/2016 (A/H5N5) segment 2 (PB1) 4049.0 0.000000e+00 2244/2270 (98%) EPI1019844 A/T_Dk/NL-Zeewolde/16013976-005/2016 (A/H5N8) segment 2 (PB1) 4049.0 0.000000e+00 2244/2270 (98%) EPI1019836 A/T_Dk/NL-Zeewolde/16013976-004-006/2016 (A/H5N8) segment 2 (PB1) 4049.0 0.000000e+00 2244/2270 (98%) EPI1019788 A/T_Dk/NL-Rotterdam/16014155-001/2016 (A/H5N8) segment 2 (PB1) 4049.0 0.000000e+00 2244/2270 (98%) EPI1019780 A/T_Dk/NL-Roggebotsluis/16014462-015/2016 (A/H5N8) segment 2 (PB1) 4049.0 0.000000e+00 2244/2270 (98%) EPI1019724 A/Magpie/NL-Volendam/16014331-002/2016 (A/H5N8) segment 2 (PB1) 4049.0 0.000000e+00 2244/2270 (98%) EPI1019716 A/M_Swan/NL-Roggebotsluis/16014462-019/2016 (A/H5N8) segment 2 (PB1) 4049.0 0.000000e+00 2244/2270 (98%) EPI1019708 A/L-bl-ba-gull/NL-Sovon/16014324-014/2016 (A/H5N8) segment 2 (PB1) 4049.0 0.000000e+00 2244/2270 (98%) EPI1019692 A/Gull1/NL-Marker Wadden/16014466-011/2016 (A/H5N8) segment 2 (PB1) 4049.0 0.000000e+00 2244/2270 (98%) EPI1019684 A/Gull/NL-Marker Wadden/16014466-020/2016 (A/H5N8) segment 2 (PB1) 4049.0 0.000000e+00 2244/2270 (98%) EPI1019652 A/G_c_grebe/NL-Monnickendam/16013865-009-010/2016 (A/H5N8) segment 2 (PB1) 4049.0 0.000000e+00 2244/2270 (98%) EPI1019628 A/Eur_Wig/NL-Wormer/16016143-002/2016 (A/H5N8) segment 2 (PB1) 4049.0 0.000000e+00 2244/2270 (98%) EPI1019596 A/Eur_Wig/NL-Terschelling/16015692-010/2016 (A/H5N8) segment 2 (PB1) 4049.0 0.000000e+00 2244/2270 (98%) EPI1019532 A/Eur_Wig/NL-Enumatil-Groningen/16015704-001/2016 (A/H5N8) segment 2 (PB1) 4049.0 0.000000e+00 2244/2270 (98%) EPI1019460 A/Dk/NL-Biddinghuizen/16015083-016-020/2016 (A/H5N8) segment 2 (PB1) 4049.0 0.000000e+00 2244/2270 (98%) EPI1019396 A/Ch/NL-Abbega/X16015736/2016 (A/H5N8) segment 2 (PB1) 4049.0 0.000000e+00 2244/2270 (98%) EPI1019388 A/C_Gull/NL-Slootdorp/16014102-003/2016 (A/H5N8) segment 2 (PB1) 4049.0 0.000000e+00 2244/2270 (98%) EPI1019380 A/Buzzard/NL-Durgerdam/16015100-004/2016 (A/H5N8) segment 2 (PB1) 4049.0 0.000000e+00 2244/2270 (98%) EPI1019372 A/Bl_H_gull/NL-Slootdorp/16014102-002/2016 (A/H5N8) segment 2 (PB1) 4049.0 0.000000e+00 2244/2270 (98%) EPI1019364 A/Bk_swan/NL-Den Oever/16013973-002/2016 (A/H5N8) segment 2 (PB1) 4049.0 0.000000e+00 2244/2270 (98%) EPI956130 A/chicken/Germany-NI/R11406/2016 (A/H5N8) segment 2 (PB1) 4049.0 0.000000e+00 2244/2270 (98%) EPI954581 A/chicken/Italy/17VIR653-12/2017 (A/H5N8) segment 2 (PB1) 4049.0 0.000000e+00 2244/2270 (98%) EPI922322 A/turkey/Germany-SH/R8595/2016 (A/H5N8) segment 2 (PB1) 4049.0 0.000000e+00 2244/2270 (98%) EPI860495 A/tufted duck/Germany-SH/R8444/2016 (A/H5N8) segment 2 (PB1) 4049.0 0.000000e+00 2244/2270 (98%) EPI860390 A/tufted_duck/Germany/AR8444-L01987/2016 (A/H5N8) segment 2 (PB1) 4049.0 0.000000e+00 2244/2270 (98%) EPI860234 A/wild duck/Poland/82A/2016 (A/H5N8) segment 2 (PB1) 4049.0 0.000000e+00 2244/2270 (98%) EPI967462 A/domestic duck/Germany-MV/R9764/2016 (A/H5N8) segment 2 (PB1) 4045.3 0.000000e+00 2243/2270 (98%) EPI1044546 A/mute swan/Kaliningrad/132/2017 (A/H5N8) segment 2 (PB1) 4043.4 0.000000e+00 2243/2270 (98%) EPI1019876 A/Teal/NL-Ferwert/16015273-013/2016 (A/H5N8) segment 2 (PB1) 4043.4 0.000000e+00 2243/2270 (98%) EPI1019868 A/T_Dk/NL-Zuidoost Beemster/16014148-009/2016 (A/H5N8) segment 2 (PB1) 4043.4 0.000000e+00 2243/2270 (98%) EPI1019860 A/T_Dk/NL-Zuidoost Beemster/16014148-002/2016 (A/H5N8) segment 2 (PB1) 4043.4 0.000000e+00 2243/2270 (98%) EPI1019852 A/T_Dk/NL-Zeewolde/16013976-006/2016 (A/H5N8) segment 2 (PB1) 4043.4 0.000000e+00 2243/2270 (98%) EPI1019828 A/T_Dk/NL-Zeewolde/16013976-004/2016 (A/H5N8) segment 2 (PB1) 4043.4 0.000000e+00 2243/2270 (98%) EPI1019820 A/T_Dk/NL-Zeewolde/16013976-001-003/2016 (A/H5N8) segment 2 (PB1) 4043.4 0.000000e+00 2243/2270 (98%) EPI1019812 A/T_Dk/NL-Zeewolde/16013976-001/2016 (A/H5N8) segment 2 (PB1) 4043.4 0.000000e+00 2243/2270 (98%) EPI1019804 A/T_Dk/NL-Werkendam/16014159-003/2016 (A/H5N8) segment 2 (PB1) 4043.4 0.000000e+00 2243/2270 (98%) EPI1019796 A/T_Dk/NL-Werkendam/16014159-002/2016 (A/H5N8) segment 2 (PB1) 4043.4 0.000000e+00 2243/2270 (98%) EPI1019756 A/Sea_eagle/NL-Assen/16015398-002/2016 (A/H5N8) segment 2 (PB1) 4043.4 0.000000e+00 2243/2270 (98%) EPI1019668 A/Gr_bk_bd_gull/NL-Slootdorp/16014102-005/2016 (A/H5N8) segment 2 (PB1) 4043.4 0.000000e+00 2243/2270 (98%) EPI1019660 A/Go/NL-Roggebotsluis/16014462-010/2016 (A/H5N8) segment 2 (PB1) 4043.4 0.000000e+00 2243/2270 (98%) EPI1019612 A/Eur_Wig/NL-Walterswald/16015923-003/2016 (A/H5N8) segment 2 (PB1) 4043.4 0.000000e+00 2243/2270 (98%) EPI1019572 A/Eur_Wig/NL-Leeuwarden/16015699-002/2016 (A/H5N8) segment 2 (PB1) 4043.4 0.000000e+00 2243/2270 (98%) EPI1019564 A/Eur_Wig/NL-Groningen/16015376-003/2016 (A/H5N8) segment 2 (PB1) 4043.4 0.000000e+00 2243/2270 (98%) EPI1019540 A/Eur_Wig/NL-Ferwert/16015273-002/2016 (A/H5N8) segment 2 (PB1) 4043.4 0.000000e+00 2243/2270 (98%) EPI1019500 A/Eur_Wig/NL-Akkrum/16015817-003/2016 (A/H5N8) segment 2 (PB1) 4043.4 0.000000e+00 2243/2270 (98%) EPI1019484 A/Dk/NL-Rotterdam/16014008-001-005/2016 (A/H5N8) segment 2 (PB1) 4043.4 0.000000e+00 2243/2270 (98%) EPI1019468 A/Dk/NL-Biddinghuizen/16015145-021-025/2016 (A/H5N8) segment 2 (PB1) 4043.4 0.000000e+00 2243/2270 (98%) EPI1019452 A/Dk/NL-Biddinghuizen/16014829-011-015/2016 (A/H5N8) segment 2 (PB1) 4043.4 0.000000e+00 2243/2270 (98%) EPI1019420 A/Ch/NL-Hiaure/16016112-001-005/2016 (A/H5N8) segment 2 (PB1) 4043.4 0.000000e+00 2243/2270 (98%) EPI1019412 A/Ch/NL-Den Oever/16014231-001/2016 (A/H5N8) segment 2 (PB1) 4043.4 0.000000e+00 2243/2270 (98%) EPI969252 A/Tufted Duck/Switzerland/V237/2016 (A/H5N8) segment 2 (PB1) 4043.4 0.000000e+00 2243/2270 (98%) EPI959329 A/Mew Gull/Netherlands/1/2016 (A/H5N8) segment 2 (PB1) 4043.4 0.000000e+00 2243/2270 (98%) EPI954781 A/Common_tern/Hungary/8187/2017 (A/H5N8) segment 2 (PB1) 4043.4 0.000000e+00 2243/2270 (98%) EPI909362 A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 2 (PB1) 4043.4 0.000000e+00 2243/2270 (98%) EPI885204 A/domestic duck/Germany-MV/R9869/2016 (A/H5N8) segment 2 (PB1) 4043.4 0.000000e+00 2243/2270 (98%) EPI881281 A/chicken/Germany-MV/R8790/2016 (A/H5N8) segment 2 (PB1) 4043.4 0.000000e+00 2243/2270 (98%) EPI881276 A/chicken/Germany-SH/R8758/2016 (A/H5N8) segment 2 (PB1) 4043.4 0.000000e+00 2243/2270 (98%) EPI863863 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 2 (PB1) 4043.4 0.000000e+00 2243/2270 (98%) EPI860398 A/tufted_duck/Germany/AR8459-L01988/2016 (A/H5N8) segment 2 (PB1) 4043.4 0.000000e+00 2243/2270 (98%) EPI859659 A/tufted_duck/Germany/AR8444-L01986/2016 (A/H5N8) segment 2 (PB1) 4043.4 0.000000e+00 2243/2270 (98%) EPI1019764 A/T_Dk/NL-Almeerder Zand/16014341-003/2016 (A/H5N8) segment 2 (PB1) 4037.9 0.000000e+00 2242/2270 (98%) EPI1019748 A/P_falcon/NL-Vrouwenpolder (Zeeland)/16015510-001/2016 (A/H5N8) segment 2 (PB1) 4037.9 0.000000e+00 2242/2270 (98%) EPI1019700 A/Gull10/NL-Marker Wadden/16014466-014/2016 (A/H5N8) segment 2 (PB1) 4037.9 0.000000e+00 2242/2270 (98%) EPI1019556 A/Eur_Wig/NL-Greonterp/16015653-001/2016 (A/H5N8) segment 2 (PB1) 4037.9 0.000000e+00 2242/2270 (98%) EPI1019524 A/Eur_Wig/NL-Drieborg (Dollard)/16015513-001/2016 (A/H5N8) segment 2 (PB1) 4037.9 0.000000e+00 2242/2270 (98%) EPI962063 A/Turkey/Hungary/53136/2016 (A/H5N8) segment 2 (PB1) 4037.9 0.000000e+00 2242/2270 (98%) EPI954811 A/Greylag_goose/Hungary/320/2017 (A/H5N8) segment 2 (PB1) 4037.9 0.000000e+00 2242/2270 (98%) EPI954661 A/Goose/Hungary/1030/2017 (A/H5N8) segment 2 (PB1) 4037.9 0.000000e+00 2242/2270 (98%) EPI931205 A/chicken/Germany-MV/R10048/2016 (A/H5N8) segment 2 (PB1) 4037.9 0.000000e+00 2242/2270 (98%) EPI909426 A/turkey/Rostov/11/2017 (A/H5N8) segment 2 (PB1) 4037.9 0.000000e+00 2242/2270 (98%) EPI859205 A/domestic_turkey/Hungary/53433/2016 (A/H5N8) segment 2 (PB1) 4037.9 0.000000e+00 2242/2270 (98%) EPI869685 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 2 (PB1) 4034.2 0.000000e+00 2241/2270 (98%) EPI1122891 A/chicken/Greece/39_2017b/2017 (A/H5N6) segment 2 (PB1) 4032.4 0.000000e+00 2241/2270 (98%) EPI1122875 A/chicken/Greece/39_2017/2017 (A/H5N6) segment 2 (PB1) 4032.4 0.000000e+00 2241/2270 (98%) EPI1032482 A/Goose/Hungary/15729/2017 (A/H5N8) segment 2 (PB1) 4032.4 0.000000e+00 2241/2270 (98%) EPI1019740 A/Mal/NL-Mastenbroek/16015378-002/2016 (A/H5N8) segment 2 (PB1) 4032.4 0.000000e+00 2241/2270 (98%) EPI1019732 A/Mal/NL-IJsselmuiden/16015448-002/2016 (A/H5N8) segment 2 (PB1) 4032.4 0.000000e+00 2241/2270 (98%) EPI1019644 A/Eur_Wig/NL-Zwolle/16015820-002/2016 (A/H5N8) segment 2 (PB1) 4032.4 0.000000e+00 2241/2270 (98%) EPI1019548 A/Eur_Wig/NL-Gouda/16015824-001/2016 (A/H5N8) segment 2 (PB1) 4032.4 0.000000e+00 2241/2270 (98%) EPI1019516 A/Eur_Wig/NL-De Waal (Texel)/16014891-004/2016 (A/H5N8) segment 2 (PB1) 4032.4 0.000000e+00 2241/2270 (98%) EPI1019444 A/Crow/NL-Oostwoud/16015372-004/2016 (A/H5N8) segment 2 (PB1) 4032.4 0.000000e+00 2241/2270 (98%) EPI1007673 A/peacock/Belgium/1017/2017 (A/H5N8) segment 2 (PB1) 4032.4 0.000000e+00 2241/2270 (98%) EPI1007665 A/chicken/Belgium/807/2017 (A/H5N8) segment 2 (PB1) 4032.4 0.000000e+00 2241/2270 (98%) EPI954875 A/Mallard/Hungary/1574a/2017 (A/H5N8) segment 2 (PB1) 4032.4 0.000000e+00 2241/2270 (98%) EPI954867 A/White_fronted_goose/Hungary/801/2017 (A/H5N8) segment 2 (PB1) 4032.4 0.000000e+00 2241/2270 (98%)
niman Posted January 25, 2018 Author Report Posted January 25, 2018 Descriptions Align Segment-ID Name Score E-Value Identity EPI1144341 A/pochard_duck/England/AVP_18_003254/2018 (A/H5N6) segment 3 (PA) 3973.3 0.000000e+00 2151/2151 (100%) EPI1123257 A/Tufted Duck/Netherlands/17017367-007/2017 (A/H5N6) segment 3 (PA) 3962.2 0.000000e+00 2149/2151 (99%) EPI1123241 A/Mute Swan/Netherlands/17017377-001/2017 (A/H5N6) segment 3 (PA) 3962.2 0.000000e+00 2149/2151 (99%) EPI1119869 A/Duck/Netherlands/17017237-001-005/2017 (A/H5N6) segment 3 (PA) 3962.2 0.000000e+00 2149/2151 (99%) EPI1144349 A/canada_goose/England/AV58_18OPpoolEP1/2018 (A/H5N6) segment 3 (PA) 3956.6 0.000000e+00 2148/2151 (99%) EPI1123233 A/Mute Swan/Netherlands/17017367-012/2017 (A/H5N6) segment 3 (PA) 3956.6 0.000000e+00 2148/2151 (99%) EPI1119861 A/Duck/Netherlands/17017236-001-005/2017 (A/H5N6) segment 3 (PA) 3956.6 0.000000e+00 2148/2151 (99%) EPI1144333 A/mute_swan/England/AVP_18_001986/2017 (A/H5N6) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%) EPI1139713 A/common_pochard/Germany-BY/AR09-L02421/2017 (A/H5N6) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%) EPI1131095 A/Black-headed Gull/Netherlands/29/2017 (A/H5N6) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%) EPI1019770 A/T_Dk/NL-Monnickendam/16013865-006-008/2016 (A/H5N8) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%) EPI1019722 A/Magpie/NL-Volendam/16014331-002/2016 (A/H5N8) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%) EPI1019706 A/L-bl-ba-gull/NL-Sovon/16014324-014/2016 (A/H5N8) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%) EPI1019650 A/G_c_grebe/NL-Monnickendam/16013865-009-010/2016 (A/H5N8) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%) EPI1019562 A/Eur_Wig/NL-Groningen/16015376-003/2016 (A/H5N8) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%) EPI1019442 A/Crow/NL-Oostwoud/16015372-004/2016 (A/H5N8) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%) EPI1019378 A/Buzzard/NL-Durgerdam/16015100-004/2016 (A/H5N8) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%) EPI1019746 A/P_falcon/NL-Vrouwenpolder (Zeeland)/16015510-001/2016 (A/H5N8) segment 3 (PA) 3895.7 0.000000e+00 2137/2151 (99%) EPI1019690 A/Gull1/NL-Marker Wadden/16014466-011/2016 (A/H5N8) segment 3 (PA) 3895.7 0.000000e+00 2137/2151 (99%) EPI1019666 A/Gr_bk_bd_gull/NL-Slootdorp/16014102-005/2016 (A/H5N8) segment 3 (PA) 3895.7 0.000000e+00 2137/2151 (99%) EPI1019658 A/Go/NL-Roggebotsluis/16014462-010/2016 (A/H5N8) segment 3 (PA) 3895.7 0.000000e+00 2137/2151 (99%) EPI1044547 A/mute swan/Kaliningrad/132/2017 (A/H5N8) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI1019802 A/T_Dk/NL-Werkendam/16014159-003/2016 (A/H5N8) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI1019794 A/T_Dk/NL-Werkendam/16014159-002/2016 (A/H5N8) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI1019738 A/Mal/NL-Mastenbroek/16015378-002/2016 (A/H5N8) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI965226 A/black-tailed godwit/Bangladesh/24734/2015 (A/H7N5) segment 3 (PA) 3733.2 0.000000e+00 2108/2152 (97%) EPI926008 A/domestic_duck/Siberia/49_feather/2016 (A/H6N8) segment 3 (PA) 3724.0 0.000000e+00 2107/2152 (97%) EPI926000 A/mallard/Chany/355/2016 (A/H1N1) segment 3 (PA) 3718.4 0.000000e+00 2106/2152 (97%) EPI925992 A/gadwall/Chany/315/2016 (A/H1N1) segment 3 (PA) 3718.4 0.000000e+00 2106/2152 (97%) EPI925984 A/mallard/Chany/313/2016 (A/H1N1) segment 3 (PA) 3718.4 0.000000e+00 2106/2152 (97%) EPI965379 A/duck/Bangladesh/24697/2015 (A/H15N9) segment 3 (PA) 3707.3 0.000000e+00 2104/2152 (97%) EPI965278 A/duck/Bangladesh/24704/2015 (A/H15N9) segment 3 (PA) 3707.3 0.000000e+00 2104/2152 (97%) EPI965237 A/duck/Bangladesh/25891/2015 (A/H4N6) segment 3 (PA) 3707.3 0.000000e+00 2104/2152 (97%) EPI963325 A/duck/Bangladesh/24035/2014 (A/H10N1) segment 3 (PA) 3707.3 0.000000e+00 2104/2152 (97%) EPI614265 A/mallard/Republic of Georgia/13/2011 (A/H6N2) segment 3 (PA) 3707.3 0.000000e+00 2105/2153 (97%) EPI965322 A/duck/Bangladesh/26918/2015 (A/H3N6) segment 3 (PA) 3701.8 0.000000e+00 2103/2152 (97%) EPI446529 A/wild goose/Dongting/C1037/2011 (A/H12N8) segment 3 (PA) 3690.7 0.000000e+00 2100/2151 (97%) EPI884265 A/mallard/Chany/126K-2/2014 (A/H8N4) segment 3 (PA) 3685.2 0.000000e+00 2100/2152 (97%) EPI476088 A/pink-footed goose/Iceland/0987/2011 (A/H6N8) segment 3 (PA) 3674.1 0.000000e+00 2100/2154 (97%) EPI476065 A/greylag goose/Iceland/0926/2011 (A/H6N8) segment 3 (PA) 3674.1 0.000000e+00 2100/2154 (97%) EPI475923 A/greylag goose/Iceland/0921/2011 (A/H6N8) segment 3 (PA) 3674.1 0.000000e+00 2100/2154 (97%) EPI538458 A/common teal/Mongolia/1920/2011 (A/H4N6) segment 3 (PA) 3672.3 0.000000e+00 2080/2126 (97%) EPI1006647 A/Anseriformes/Anhui/L25/2014 (A/H1N1) segment 3 (PA) 3668.6 0.000000e+00 2098/2153 (97%) EPI965541 A/duck/Bangladesh/27042/2015 (A/H7N9) segment 3 (PA) 3668.6 0.000000e+00 2097/2152 (97%) EPI965406 A/duck/Bangladesh/26980/2015 (A/H7N9) segment 3 (PA) 3668.6 0.000000e+00 2097/2152 (97%) EPI925976 A/pintail/Chany/198/2016 (A/H3N8) segment 3 (PA) 3668.6 0.000000e+00 2097/2152 (97%) EPI925960 A/teal/Chany/135/2016 (A/H3N8) segment 3 (PA) 3668.6 0.000000e+00 2097/2152 (97%) EPI704339 A/duck/Mongolia/179/2015 (A/H3N8) segment 3 (PA) 3668.6 0.000000e+00 2097/2152 (97%) EPI704322 A/duck/Mongolia/173/2015 (A/H3N8) segment 3 (PA) 3668.6 0.000000e+00 2097/2152 (97%) EPI476086 A/greylag goose/Iceland/0976/2011 (A/H6N8) segment 3 (PA) 3668.6 0.000000e+00 2099/2154 (97%) EPI476085 A/greylag goose/Iceland/0961/2011 (A/H6N8) segment 3 (PA) 3668.6 0.000000e+00 2099/2154 (97%) EPI475922 A/greylag goose/Iceland/0911/2011 (A/H6N8) segment 3 (PA) 3668.6 0.000000e+00 2099/2154 (97%) EPI969334 A/wild bird/Korea/SK14/2014 (A/H1N1) segment 3 (PA) 3663.0 0.000000e+00 2097/2153 (97%) EPI965516 A/duck/Bangladesh/26992/2015 (A/H7N9) segment 3 (PA) 3663.0 0.000000e+00 2096/2152 (97%) EPI942184 A/duck/Hubei/ZYSYG15/2015 (A/H6N2) segment 3 (PA) 3663.0 0.000000e+00 2096/2152 (97%) EPI942183 A/duck/Hubei/ZYSYG14/2015 (A/H6N2) segment 3 (PA) 3663.0 0.000000e+00 2096/2152 (97%) EPI942182 A/duck/Hubei/ZYSYG1/2015 (A/H6N2) segment 3 (PA) 3663.0 0.000000e+00 2096/2152 (97%) EPI925968 A/mallard/Chany/185/2016 (A/H3N8) segment 3 (PA) 3663.0 0.000000e+00 2096/2152 (97%) EPI692479 A/duck/Hubei/S2114/2012 (A/H4N8) segment 3 (PA) 3663.0 0.000000e+00 2095/2151 (97%) EPI596393 A/muscovy duck/Vietnam/LBM201/2012 (A/H3N2) segment 3 (PA) 3663.0 0.000000e+00 2096/2152 (97%) EPI476087 A/greylag goose/Iceland/0980/2011 (A/H6N8) segment 3 (PA) 3663.0 0.000000e+00 2098/2154 (97%) EPI475921 A/greylag goose/Iceland/1482/2011 (A/H6N8) segment 3 (PA) 3663.0 0.000000e+00 2098/2154 (97%) EPI336009 A/teal/Chany/444/2009 (A/H8N8) segment 3 (PA) 3663.0 0.000000e+00 2097/2153 (97%) EPI1006604 A/Anseriformes/Anhui/S3/2014 (A/H1N1) segment 3 (PA) 3657.5 0.000000e+00 2096/2153 (97%) EPI895321 A/Anser fabalis/China/Anhui/L144/2014 (A/H6N1) segment 3 (PA) 3657.5 0.000000e+00 2096/2153 (97%) EPI895305 A/Anser fabalis/China/Anhui/L63/2014 (A/H6N2) segment 3 (PA) 3657.5 0.000000e+00 2096/2153 (97%) EPI895297 A/Anser fabalis/China/Anhui/L9/2014 (A/H6N2) segment 3 (PA) 3657.5 0.000000e+00 2096/2153 (97%) EPI895281 A/Anser fabalis/China/Anhui/S104/2014 (A/H6N2) segment 3 (PA) 3657.5 0.000000e+00 2097/2154 (97%) EPI895265 A/Anser fabalis/China/Anhui/S45/2014 (A/H6N2) segment 3 (PA) 3657.5 0.000000e+00 2097/2154 (97%) EPI441050 A/muscovy duck/Vietnam/LBM198/2012 (A/H6N2) segment 3 (PA) 3657.5 0.000000e+00 2095/2152 (97%) EPI418270 A/muscovy duck/Vietnam/LBM189/2012 (A/H3N2) segment 3 (PA) 3657.5 0.000000e+00 2095/2152 (97%) EPI387543 A/white-fronted goose/Mongolia/1-125/2008 (A/H3N8) segment 3 (PA) 3657.5 0.000000e+00 2077/2125 (97%) EPI222086 A/garganey/Altai/1213/2007 (A/H5N2) segment 3 (PA) 3657.5 0.000000e+00 2095/2152 (97%) EPI222046 A/gadwall/Altai/1202/2007 (A/H5N2) segment 3 (PA) 3657.5 0.000000e+00 2095/2152 (97%) EPI1006661 A/Anseriformes/Anhui/L259/2014 (A/H1N1) segment 3 (PA) 3651.9 0.000000e+00 2096/2154 (97%) EPI475919 A/greylag goose/Iceland/1474/2011 (A/H6N8) segment 3 (PA) 3651.9 0.000000e+00 2096/2154 (97%) EPI1014810 A/mallard duck/Netherlands/20/2012 (A/H1N1) segment 3 (PA) 3646.4 0.000000e+00 2094/2153 (97%) EPI1006618 A/Anseriformes/Anhui/S107/2014 (A/H1N1) segment 3 (PA) 3646.4 0.000000e+00 2094/2153 (97%) EPI890476 A/mallard duck/Netherlands/10/2012 (A/H6N1) segment 3 (PA) 3646.4 0.000000e+00 2094/2153 (97%) EPI890244 A/mallard duck/Netherlands/37/2011 (A/H1N1) segment 3 (PA) 3646.4 0.000000e+00 2094/2153 (97%) EPI889662 A/mallard duck/Netherlands/7/2012 (A/H1N1) segment 3 (PA) 3646.4 0.000000e+00 2094/2153 (97%) EPI1006654 A/Anseriformes/Anhui/L167/2014 (A/H1N1) segment 3 (PA) 3640.9 0.000000e+00 2091/2151 (97%) EPI895289 A/Anser fabalis/China/Anhui/S148/2014 (A/H6N2) segment 3 (PA) 3640.9 0.000000e+00 2094/2154 (97%) EPI890932 A/mallard duck/Netherlands/5/2013 (A/H1N1) segment 3 (PA) 3640.9 0.000000e+00 2093/2153 (97%) EPI598436 A/duck/Jiangxi/6535/2013 (A/H10N8) segment 3 (PA) 3640.9 0.000000e+00 2091/2151 (97%) EPI598434 A/duck/Jiangxi/6648/2013 (A/H10N8) segment 3 (PA) 3640.9 0.000000e+00 2091/2151 (97%) EPI598433 A/duck/Jiangxi/6645/2013 (A/H10N8) segment 3 (PA) 3640.9 0.000000e+00 2091/2151 (97%) EPI598431 A/duck/Jiangxi/6624/2013 (A/H10N8) segment 3 (PA) 3640.9 0.000000e+00 2091/2151 (97%) EPI598430 A/duck/Jiangxi/6602/2013 (A/H10N8) segment 3 (PA) 3640.9 0.000000e+00 2091/2151 (97%) EPI598428 A/duck/Jiangxi/6568/2013 (A/H10N8) segment 3 (PA) 3640.9 0.000000e+00 2091/2151 (97%) EPI598425 A/duck/Jiangxi/6544/2013 (A/H10N8) segment 3 (PA) 3640.9 0.000000e+00 2091/2151 (97%) EPI598424 A/duck/Jiangxi/6526/2013 (A/H10N8) segment 3 (PA) 3640.9 0.000000e+00 2091/2151 (97%) EPI598423 A/duck/Jiangxi/6515/2013 (A/H10N8) segment 3 (PA) 3640.9 0.000000e+00 2091/2151 (97%) EPI598364 A/duck/Jiangxi/6496/2013 (A/H10N8) segment 3 (PA) 3640.9 0.000000e+00 2091/2151 (97%) EPI598362 A/duck/Jiangxi/6474/2013 (A/H10N8) segment 3 (PA) 3640.9 0.000000e+00 2091/2151 (97%) EPI598361 A/duck/Jiangxi/6460/2013 (A/H10N8) segment 3 (PA) 3640.9 0.000000e+00 2091/2151 (97%) EPI598358 A/duck/Jiangxi/6450/2013 (A/H10N8) segment 3 (PA) 3640.9 0.000000e+00 2091/2151 (97%) EPI538449 A/ruddy shelduck/Mongolia/686C2/2008 (A/H2N3) segment 3 (PA) 3639.0 0.000000e+00 2075/2127 (97%) EPI1014040 A/mallard duck/Netherlands/10/2013 (A/H4N6) segment 3 (PA) 3635.3 0.000000e+00 2092/2153 (97%) EPI884260 A/mallard/Chany/126K/2014 (A/H5N3) segment 3 (PA) 3635.3 0.000000e+00 2091/2152 (97%)
niman Posted January 25, 2018 Author Report Posted January 25, 2018 Descriptions Align Segment-ID Name Score E-Value Identity EPI1144343 A/pochard_duck/England/AVP_18_003254/2018 (A/H5N6) segment 5 (NP) 2765.6 0.000000e+00 1497/1497 (100%) EPI1144335 A/mute_swan/England/AVP_18_001986/2017 (A/H5N6) segment 5 (NP) 2765.6 0.000000e+00 1497/1497 (100%) EPI1131097 A/Black-headed Gull/Netherlands/29/2017 (A/H5N6) segment 5 (NP) 2765.6 0.000000e+00 1497/1497 (100%) EPI1123238 A/Mute Swan/Netherlands/17017377-001/2017 (A/H5N6) segment 5 (NP) 2765.6 0.000000e+00 1497/1497 (100%) EPI1144351 A/canada_goose/England/AV58_18OPpoolEP1/2018 (A/H5N6) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%) EPI1139715 A/common_pochard/Germany-BY/AR09-L02421/2017 (A/H5N6) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%) EPI1123254 A/Tufted Duck/Netherlands/17017367-007/2017 (A/H5N6) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%) EPI1123230 A/Mute Swan/Netherlands/17017367-012/2017 (A/H5N6) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%) EPI1119871 A/Duck/Netherlands/17017237-001-005/2017 (A/H5N6) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%) EPI1119863 A/Duck/Netherlands/17017236-001-005/2017 (A/H5N6) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%) EPI1131089 A/Great Black-backed Gull/Netherlands/1/2017 (A/H5N6) segment 5 (NP) 2743.4 0.000000e+00 1493/1497 (99%) EPI961450 A/gadwall/Kurgan/2442/2016 (A/H5N8) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI909453 A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI1117254 A/T_Dk/NL-Werkendam/16014159-001/2016 (A/H5N5) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI1044548 A/mute swan/Kaliningrad/132/2017 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI1019791 A/T_Dk/NL-Werkendam/16014159-002/2016 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI1019783 A/T_Dk/NL-Rotterdam/16014155-001/2016 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI1019775 A/T_Dk/NL-Roggebotsluis/16014462-015/2016 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI1019767 A/T_Dk/NL-Monnickendam/16013865-006-008/2016 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI1019759 A/T_Dk/NL-Almeerder Zand/16014341-003/2016 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI1019751 A/Sea_eagle/NL-Assen/16015398-002/2016 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI1019743 A/P_falcon/NL-Vrouwenpolder (Zeeland)/16015510-001/2016 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI1019695 A/Gull10/NL-Marker Wadden/16014466-014/2016 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI1019687 A/Gull1/NL-Marker Wadden/16014466-011/2016 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI1019679 A/Gull/NL-Marker Wadden/16014466-020/2016 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI1019663 A/Gr_bk_bd_gull/NL-Slootdorp/16014102-005/2016 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI1019655 A/Go/NL-Roggebotsluis/16014462-010/2016 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI1019647 A/G_c_grebe/NL-Monnickendam/16013865-009-010/2016 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI1019479 A/Dk/NL-Rotterdam/16014008-001-005/2016 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI1019407 A/Ch/NL-Den Oever/16014231-001/2016 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI1019383 A/C_Gull/NL-Slootdorp/16014102-003/2016 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI1019367 A/Bl_H_gull/NL-Slootdorp/16014102-002/2016 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI909461 A/chicken/Kalmykia/2643/2016 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI1019839 A/T_Dk/NL-Zeewolde/16013976-005/2016 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI1019831 A/T_Dk/NL-Zeewolde/16013976-004-006/2016 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI1019799 A/T_Dk/NL-Werkendam/16014159-003/2016 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI1019735 A/Mal/NL-Mastenbroek/16015378-002/2016 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI1019719 A/Magpie/NL-Volendam/16014331-002/2016 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI1019703 A/L-bl-ba-gull/NL-Sovon/16014324-014/2016 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI1019623 A/Eur_Wig/NL-Wormer/16016143-002/2016 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI1019615 A/Eur_Wig/NL-West Graftdijk/16015746-003/2016 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI1019607 A/Eur_Wig/NL-Walterswald/16015923-003/2016 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI1019599 A/Eur_Wig/NL-Vianen/16015917-006/2016 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI1019559 A/Eur_Wig/NL-Groningen/16015376-003/2016 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI1019543 A/Eur_Wig/NL-Gouda/16015824-001/2016 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI1019527 A/Eur_Wig/NL-Enumatil-Groningen/16015704-001/2016 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI1019511 A/Eur_Wig/NL-De Waal (Texel)/16014891-004/2016 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI1019503 A/Eur_Wig/NL-De Waal (Texel)/16014891-003/2016 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI1019487 A/Dk/NL-Stolwijk/16016291-016-020/2016 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI1019471 A/Dk/NL-Kamperveen/16016104-001-005/2016 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI1019375 A/Buzzard/NL-Durgerdam/16015100-004/2016 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI954870 A/Mallard/Hungary/1574a/2017 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI954854 A/Mallard/Hungary/1574b/2017 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI954776 A/Common_tern/Hungary/8187/2017 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI942936 A/turkey/England/003778/2017 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI909421 A/chicken/Voronezh/20/2017 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI909413 A/chicken/Voronezh/19/2017 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI909405 A/chicken/Voronezh/18/2017 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI909397 A/long-eared owl/Voronezh/16/2017 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI909389 A/Ural owl/Voronezh/14/2017 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI909381 A/long-eared owl/Voronezh/15/2017 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI906264 A/chicken/Germany-MV/R8790/2016 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI868849 A/turkey/England/052131/2016 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI860394 A/tufted_duck/Germany/AR8444-L01987/2016 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI861394 A/turkey/Germany-SH/R8595/2016 (A/H5N8) segment 5 (NP) 2712.0 0.000000e+00 1487/1497 (99%) EPI1040234 A/chicken/Italy/17VIR3078/2017 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI1019863 A/T_Dk/NL-Zuidoost Beemster/16014148-009/2016 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1488/1498 (99%) EPI1019855 A/T_Dk/NL-Zuidoost Beemster/16014148-002/2016 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1488/1498 (99%) EPI1019847 A/T_Dk/NL-Zeewolde/16013976-006/2016 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI1019727 A/Mal/NL-IJsselmuiden/16015448-002/2016 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI1019711 A/M_Swan/NL-Roggebotsluis/16014462-019/2016 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI1019671 A/Grey_Go/NL-Groot-Ammers/16015901-012/2016 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI1019639 A/Eur_Wig/NL-Zwolle/16015820-002/2016 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI1019631 A/Eur_Wig/NL-Zoeterwoude/16015702-010/2016 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI1019575 A/Eur_Wig/NL-Leidschendam/16015697-007/2016 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI1019567 A/Eur_Wig/NL-Leeuwarden/16015699-002/2016 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI1019463 A/Dk/NL-Biddinghuizen/16015145-021-025/2016 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI1019455 A/Dk/NL-Biddinghuizen/16015083-016-020/2016 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI1019447 A/Dk/NL-Biddinghuizen/16014829-011-015/2016 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI1019439 A/Crow/NL-Oostwoud/16015372-004/2016 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI1019431 A/Ch/NL-Zoeterwoude/16016484-021-025/2016 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI1019423 A/Ch/NL-Rhenen/16016141-006/2016 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI1019399 A/Ch/NL-Boven Leeuwen/16016151-006-010/2016 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI1019391 A/Ch/NL-Abbega/X16015736/2016 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI1019359 A/Bk_swan/NL-Den Oever/16013973-002/2016 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI990779 A/mute swan/Germany-NI/AR1529-L02145/2017 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI990763 A/eurasian wigeon/Germany-NI/AR249-L02143/2017 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI988592 A/turkey/Germany-NI/R9807/2016 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI959332 A/Mew Gull/Netherlands/1/2016 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI954752 A/Peregrine_falcon/Hungary/4882/2017 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI954600 A/turkey/Italy/17VIR1452-22/2017 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI954576 A/chicken/Italy/17VIR653-12/2017 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI954568 A/turkey/Italy/17VIR576-11/2017 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI942944 A/chicken/Wales/000023/2016 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI909437 A/goose/Krasnodar/3144/2017 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI909365 A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI906263 A/chicken/Germany-SH/R8758/2016 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI888670 A/domestic duck/Germany-MV/R9869/2016 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI860402 A/tufted_duck/Germany/AR8459-L01988/2016 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI859656 A/tufted_duck/Germany/AR8444-L01986/2016 (A/H5N8) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%)
niman Posted January 25, 2018 Author Report Posted January 25, 2018 Descriptions Align Segment-ID Name Score E-Value Identity EPI1144346 A/pochard_duck/England/AVP_18_003254/2018 (A/H5N6) segment 8 (NS) 1554.2 0.000000e+00 841/841 (100%) EPI1131100 A/Black-headed Gull/Netherlands/29/2017 (A/H5N6) segment 8 (NS) 1550.5 0.000000e+00 839/839 (100%) EPI1123231 A/Mute Swan/Netherlands/17017367-012/2017 (A/H5N6) segment 8 (NS) 1550.5 0.000000e+00 839/839 (100%) EPI1119874 A/Duck/Netherlands/17017237-001-005/2017 (A/H5N6) segment 8 (NS) 1550.5 0.000000e+00 839/839 (100%) EPI1119866 A/Duck/Netherlands/17017236-001-005/2017 (A/H5N6) segment 8 (NS) 1550.5 0.000000e+00 839/839 (100%) EPI1144338 A/mute_swan/England/AVP_18_001986/2017 (A/H5N6) segment 8 (NS) 1548.6 0.000000e+00 840/841 (99%) EPI1144354 A/canada_goose/England/AV58_18OPpoolEP1/2018 (A/H5N6) segment 8 (NS) 1544.9 0.000000e+00 839/841 (99%) EPI1123255 A/Tufted Duck/Netherlands/17017367-007/2017 (A/H5N6) segment 8 (NS) 1544.9 0.000000e+00 838/839 (99%) EPI1123239 A/Mute Swan/Netherlands/17017377-001/2017 (A/H5N6) segment 8 (NS) 1544.9 0.000000e+00 838/839 (99%) EPI1139718 A/common_pochard/Germany-BY/AR09-L02421/2017 (A/H5N6) segment 8 (NS) 1533.8 0.000000e+00 836/839 (99%) EPI1131092 A/Great Black-backed Gull/Netherlands/1/2017 (A/H5N6) segment 8 (NS) 1522.8 0.000000e+00 834/839 (99%) EPI866979 A/duck/Hungary/60441/2016 (A/H5N8) segment 8 (NS) 1461.8 0.000000e+00 823/839 (98%) EPI1081973 A/goose/Italy/17VIR6358-3/2017 (A/H5N8) segment 8 (NS) 1456.3 0.000000e+00 822/839 (97%) EPI1081921 A/swan/Italy/17VIR7064-1/2017 (A/H5N8) segment 8 (NS) 1456.3 0.000000e+00 822/839 (97%) EPI1032556 A/Mulard_duck/Hungary/59163/2016 (A/H5N8) segment 8 (NS) 1456.3 0.000000e+00 822/839 (97%) EPI1032542 A/Goose/Hungary/64909/2016 (A/H5N8) segment 8 (NS) 1456.3 0.000000e+00 822/839 (97%) EPI1032534 A/Goose/Hungary/63743/2016 (A/H5N8) segment 8 (NS) 1456.3 0.000000e+00 822/839 (97%) EPI1032526 A/Mulard_duck/Hungary/62902/2016 (A/H5N8) segment 8 (NS) 1456.3 0.000000e+00 822/839 (97%) EPI1032518 A/Mulard_duck/Hungary/60369/2016 (A/H5N8) segment 8 (NS) 1456.3 0.000000e+00 822/839 (97%) EPI1032510 A/Goose/Hungary/59763/2016 (A/H5N8) segment 8 (NS) 1456.3 0.000000e+00 822/839 (97%) EPI1032502 A/Goose/Hungary/17985/2017 (A/H5N8) segment 8 (NS) 1456.3 0.000000e+00 822/839 (97%) EPI1032494 A/Goose/Hungary/17580/2017 (A/H5N8) segment 8 (NS) 1456.3 0.000000e+00 822/839 (97%) EPI1032486 A/Goose/Hungary/17051/2017 (A/H5N8) segment 8 (NS) 1456.3 0.000000e+00 822/839 (97%) EPI1032470 A/Goose/Hungary/17261/2017 (A/H5N8) segment 8 (NS) 1456.3 0.000000e+00 822/839 (97%) EPI962038 A/Duck/Hungary/54738/2016 (A/H5N8) segment 8 (NS) 1456.3 0.000000e+00 822/839 (97%) EPI959557 A/Rook/Hungary/4975/2017 (A/H5N8) segment 8 (NS) 1456.3 0.000000e+00 822/839 (97%) EPI959533 A/Mute swan/Hungary/6276/2017 (A/H5N8) segment 8 (NS) 1456.3 0.000000e+00 822/839 (97%) EPI956131 A/chicken/Germany-NI/R11406/2016 (A/H5N8) segment 8 (NS) 1456.3 0.000000e+00 822/839 (97%) EPI954863 A/White_fronted_goose/Hungary/801/2017 (A/H5N8) segment 8 (NS) 1456.3 0.000000e+00 822/839 (97%) EPI954831 A/Mute swan/Hungary/3137/2017 (A/H5N8) segment 8 (NS) 1456.3 0.000000e+00 822/839 (97%) EPI954815 A/GuineaFowl/Hungary/596/2017 (A/H5N8) segment 8 (NS) 1456.3 0.000000e+00 822/839 (97%) EPI954729 A/Mute swan/Hungary/3513/2017 (A/H5N8) segment 8 (NS) 1456.3 0.000000e+00 822/839 (97%) EPI954721 A/Mute swan/Hungary/3139/2017 (A/H5N8) segment 8 (NS) 1456.3 0.000000e+00 822/839 (97%) EPI954673 A/Greylag_goose/Hungary/1941/2017 (A/H5N8) segment 8 (NS) 1456.3 0.000000e+00 822/839 (97%) EPI954633 A/Harris Hawk/Hungary/120/2017 (A/H5N8) segment 8 (NS) 1456.3 0.000000e+00 822/839 (97%) EPI909464 A/chicken/Kalmykia/2643/2016 (A/H5N8) segment 8 (NS) 1456.3 0.000000e+00 822/839 (97%) EPI909456 A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 8 (NS) 1456.3 0.000000e+00 822/839 (97%) EPI866975 A/chicken/Hungary/59048/2016 (A/H5N8) segment 8 (NS) 1456.3 0.000000e+00 822/839 (97%) EPI860533 A/duck/Hungary/55191/2016 (A/H5N8) segment 8 (NS) 1456.3 0.000000e+00 822/839 (97%) EPI860520 A/goose/Hungary/55128/2016 (A/H5N8) segment 8 (NS) 1456.3 0.000000e+00 822/839 (97%) EPI860517 A/Mulard_duck/Hungary/54494/2016 (A/H5N8) segment 8 (NS) 1456.3 0.000000e+00 822/839 (97%) EPI1019848 A/T_Dk/NL-Zeewolde/16013976-006/2016 (A/H5N8) segment 8 (NS) 1454.4 0.000000e+00 823/841 (97%) EPI1019824 A/T_Dk/NL-Zeewolde/16013976-004/2016 (A/H5N8) segment 8 (NS) 1454.4 0.000000e+00 823/841 (97%) EPI1019816 A/T_Dk/NL-Zeewolde/16013976-001-003/2016 (A/H5N8) segment 8 (NS) 1454.4 0.000000e+00 823/841 (97%) EPI1019808 A/T_Dk/NL-Zeewolde/16013976-001/2016 (A/H5N8) segment 8 (NS) 1454.4 0.000000e+00 823/841 (97%) EPI1019760 A/T_Dk/NL-Almeerder Zand/16014341-003/2016 (A/H5N8) segment 8 (NS) 1454.4 0.000000e+00 823/841 (97%) EPI1019720 A/Magpie/NL-Volendam/16014331-002/2016 (A/H5N8) segment 8 (NS) 1454.4 0.000000e+00 823/841 (97%) EPI1019712 A/M_Swan/NL-Roggebotsluis/16014462-019/2016 (A/H5N8) segment 8 (NS) 1454.4 0.000000e+00 823/841 (97%) EPI1019704 A/L-bl-ba-gull/NL-Sovon/16014324-014/2016 (A/H5N8) segment 8 (NS) 1454.4 0.000000e+00 823/841 (97%) EPI1019696 A/Gull10/NL-Marker Wadden/16014466-014/2016 (A/H5N8) segment 8 (NS) 1454.4 0.000000e+00 823/841 (97%) EPI1019624 A/Eur_Wig/NL-Wormer/16016143-002/2016 (A/H5N8) segment 8 (NS) 1454.4 0.000000e+00 823/841 (97%) EPI1019528 A/Eur_Wig/NL-Enumatil-Groningen/16015704-001/2016 (A/H5N8) segment 8 (NS) 1454.4 0.000000e+00 823/841 (97%) EPI1019440 A/Crow/NL-Oostwoud/16015372-004/2016 (A/H5N8) segment 8 (NS) 1454.4 0.000000e+00 823/841 (97%) EPI1019376 A/Buzzard/NL-Durgerdam/16015100-004/2016 (A/H5N8) segment 8 (NS) 1454.4 0.000000e+00 823/841 (97%) EPI969258 A/Tufted Duck/Switzerland/V237/2016 (A/H5N8) segment 8 (NS) 1454.4 0.000000e+00 823/841 (97%) EPI961494 A/shelduck/Italy/17VIR1572-24/2017 (A/H5N8) segment 8 (NS) 1454.4 0.000000e+00 821/838 (97%) EPI954601 A/turkey/Italy/17VIR1452-22/2017 (A/H5N8) segment 8 (NS) 1454.4 0.000000e+00 821/838 (97%) EPI954577 A/chicken/Italy/17VIR653-12/2017 (A/H5N8) segment 8 (NS) 1454.4 0.000000e+00 821/838 (97%) EPI888092 A/wigeon/Italy/17VIR57-3/2017 (A/H5N8) segment 8 (NS) 1454.4 0.000000e+00 821/838 (97%) EPI1126358 A/mute swan/Czech Republic/1060-17/2017 (H5N8) (A/H5N8) segment 8 (NS) 1450.7 0.000000e+00 821/839 (97%) EPI1093385 A/mute swan/Czech Republic/1058-17/2017 (H5N8) (A/H5N8) segment 8 (NS) 1450.7 0.000000e+00 821/839 (97%) EPI1085346 A/goose/Czech Republic/136-17_1/2017 (H5N8) (A/H5N8) segment 8 (NS) 1450.7 0.000000e+00 821/839 (97%) EPI1081898 A/turkey/Czech Republic/38-17_1/2017 (H5N8) (A/H5N8) segment 8 (NS) 1450.7 0.000000e+00 821/839 (97%) EPI1081886 A/mute swan/Czech Republic/54-17_2/2017 (H5N8) (A/H5N8) segment 8 (NS) 1450.7 0.000000e+00 821/839 (97%) EPI1045979 A/unknown/Tatarstan/94/2017 (A/H5N8) segment 8 (NS) 1450.7 0.000000e+00 821/839 (97%) EPI1045621 A/chicken/Tatarstan/88/2017 (A/H5N8) segment 8 (NS) 1450.7 0.000000e+00 821/839 (97%) EPI1045599 A/chicken/Shchyolkovo/47/2017 (A/H5N8) segment 8 (NS) 1450.7 0.000000e+00 821/839 (97%) EPI1032478 A/Goose/Hungary/15729/2017 (A/H5N8) segment 8 (NS) 1450.7 0.000000e+00 821/839 (97%) EPI1019616 A/Eur_Wig/NL-West Graftdijk/16015746-003/2016 (A/H5N8) segment 8 (NS) 1450.7 0.000000e+00 821/839 (97%) EPI1019600 A/Eur_Wig/NL-Vianen/16015917-006/2016 (A/H5N8) segment 8 (NS) 1450.7 0.000000e+00 821/839 (97%) EPI1019576 A/Eur_Wig/NL-Leidschendam/16015697-007/2016 (A/H5N8) segment 8 (NS) 1450.7 0.000000e+00 821/839 (97%) EPI1019544 A/Eur_Wig/NL-Gouda/16015824-001/2016 (A/H5N8) segment 8 (NS) 1450.7 0.000000e+00 821/839 (97%) EPI1019512 A/Eur_Wig/NL-De Waal (Texel)/16014891-004/2016 (A/H5N8) segment 8 (NS) 1450.7 0.000000e+00 821/839 (97%) EPI1019504 A/Eur_Wig/NL-De Waal (Texel)/16014891-003/2016 (A/H5N8) segment 8 (NS) 1450.7 0.000000e+00 821/839 (97%) EPI1019432 A/Ch/NL-Zoeterwoude/16016484-021-025/2016 (A/H5N8) segment 8 (NS) 1450.7 0.000000e+00 821/839 (97%) EPI1007679 A/peacock/Belgium/1017/2017 (A/H5N8) segment 8 (NS) 1450.7 0.000000e+00 821/839 (97%) EPI962059 A/Turkey/Hungary/53136/2016 (A/H5N8) segment 8 (NS) 1450.7 0.000000e+00 821/839 (97%) EPI962048 A/Duck/Hungary/55764/2016 (A/H5N8) segment 8 (NS) 1450.7 0.000000e+00 821/839 (97%) EPI961471 A/chicken/Sergiyev Posad/39/2017 (A/H5N8) segment 8 (NS) 1450.7 0.000000e+00 821/839 (97%) EPI961463 A/chicken/Sergiyev Posad/38/2017 (A/H5N8) segment 8 (NS) 1450.7 0.000000e+00 821/839 (97%) EPI961453 A/gadwall/Kurgan/2442/2016 (A/H5N8) segment 8 (NS) 1450.7 0.000000e+00 821/839 (97%) EPI956122 A/Goose/Hungary/59712/2016 (A/H5N8) segment 8 (NS) 1450.7 0.000000e+00 821/839 (97%) EPI954839 A/Mallard/Hungary/5821/2017 (A/H5N8) segment 8 (NS) 1450.7 0.000000e+00 821/839 (97%) EPI954823 A/Chicken/Hungary/1751/2017 (A/H5N8) segment 8 (NS) 1450.7 0.000000e+00 821/839 (97%) EPI954745 A/Chicken/Hungary/2496/2017 (A/H5N8) segment 8 (NS) 1450.7 0.000000e+00 821/839 (97%) EPI954713 A/Mute swan/Hungary/2825/2017 (A/H5N8) segment 8 (NS) 1450.7 0.000000e+00 821/839 (97%) EPI954705 A/Mute swan/Hungary/2508/2017 (A/H5N8) segment 8 (NS) 1450.7 0.000000e+00 821/839 (97%) EPI953757 A/mallard/Hungary/57857/2016 (A/H5N8) segment 8 (NS) 1450.7 0.000000e+00 821/839 (97%) EPI942947 A/chicken/Wales/000023/2016 (A/H5N8) segment 8 (NS) 1450.7 0.000000e+00 821/839 (97%) EPI909470 A/chicken/Astrakhan/3131/2016 (A/H5N8) segment 8 (NS) 1450.7 0.000000e+00 821/839 (97%) EPI909448 A/mute swan/Krasnodar/25/2017 (A/H5N8) segment 8 (NS) 1450.7 0.000000e+00 821/839 (97%) EPI909440 A/goose/Krasnodar/3144/2017 (A/H5N8) segment 8 (NS) 1450.7 0.000000e+00 821/839 (97%) EPI909424 A/chicken/Voronezh/20/2017 (A/H5N8) segment 8 (NS) 1450.7 0.000000e+00 821/839 (97%) EPI909416 A/chicken/Voronezh/19/2017 (A/H5N8) segment 8 (NS) 1450.7 0.000000e+00 821/839 (97%) EPI909408 A/chicken/Voronezh/18/2017 (A/H5N8) segment 8 (NS) 1450.7 0.000000e+00 821/839 (97%) EPI909400 A/long-eared owl/Voronezh/16/2017 (A/H5N8) segment 8 (NS) 1450.7 0.000000e+00 821/839 (97%) EPI909392 A/Ural owl/Voronezh/14/2017 (A/H5N8) segment 8 (NS) 1450.7 0.000000e+00 821/839 (97%) EPI909384 A/long-eared owl/Voronezh/15/2017 (A/H5N8) segment 8 (NS) 1450.7 0.000000e+00 821/839 (97%) EPI868852 A/turkey/England/052131/2016 (A/H5N8) segment 8 (NS) 1450.7 0.000000e+00 821/839 (97%) EPI859211 A/domestic_turkey/Hungary/53433/2016 (A/H5N8) segment 8 (NS) 1450.7 0.000000e+00 821/839 (97%)
niman Posted January 25, 2018 Author Report Posted January 25, 2018 Isolate detail Isolate name: A/mute_swan/England/AVP_18_001986/2017 Isolate ID: EPI_ISL_292223 Passage details/history: Egg Passage 1 Type: A / H5N6 Lineage: Sample information Collection date: 2017-12-31 Host Cygnus olor Additional host information: Domestic status: Wild Is vaccinated: N Location: United Kingdom / Dorset Additional location information: Abbotsbury Health status: Dead Specimen source: Oro-pharyngeal swab Strain or commercial product name used for vaccination: Institute information Originating lab: Animal and Plant Health Agency (APHA) Sample ID given by the sample provider: AVP-18-001986 Address: Animal and Plant Health Agency (APHA) Virology Department Woodham Lane New Haw, Addlestone, Surrey KT15 3NB United Kingdom Submitting lab: Animal and Plant Health Agency (APHA) Sample ID given by the submitting laboratory: AVP-18-001986 Authors: Seekings, James; Ellis, Richard; Brookes, Sharon M; Reid, Scott; Essen, Stephen; Lewis, Nicola; Brown, Ian H Address: Animal and Plant Health Agency (APHA) Virology Department Woodham Lane New Haw, Addlestone, Surrey KT15 3NB United Kingdom Publication Publication In vivo antiviral resistance Phenotype Genotype Unspecified Antiviral resistance tested by experimental procedures Adamantanes: Unknown Oseltamivir: Unknown Zanamivir: Unknown Peramivir: Unknown Other: Unknown Additional information Antigenic characterization: Note: Sequence segment identifier length accession # INSDC Sequence PB2 A/mute_swan/England/AVP_18_001986/2017 2341 EPI1144331 PB1 A/mute_swan/England/AVP_18_001986/2017 2341 EPI1144332 PA A/mute_swan/England/AVP_18_001986/2017 2233 EPI1144333 HA A/mute_swan/England/AVP_18_001986/2017 1776 EPI1144334 NP A/mute_swan/England/AVP_18_001986/2017 1565 EPI1144335 NA A/mute_swan/England/AVP_18_001986/2017 1465 EPI1144336 MP A/mute_swan/England/AVP_18_001986/2017 1027 EPI1144337 NS A/mute_swan/England/AVP_18_001986/2017 890 EPI1144338 Submitter information Submitter: Seekings, James Submission Date: 2018-01-19 Last modifier: Seekings, James Last modified: 2018-01-23 Address: Animal and Plant Health Agency (APHA) Virology Department Woodham Lane New Haw, Addlestone, Surrey KT15 3NB United Kingdom
niman Posted January 26, 2018 Author Report Posted January 26, 2018 Align Segment-ID Name Score E-Value Identity EPI1144334 A/mute_swan/England/AVP_18_001986/2017 (A/H5N6) segment 4 (HA) 3147.8 0.000000e+00 1704/1704 (100%) EPI1144350 A/canada_goose/England/AV58_18OPpoolEP1/2018 (A/H5N6) segment 4 (HA) 3142.3 0.000000e+00 1703/1704 (99%) EPI1123261 A/Tufted Duck/Netherlands/17017367-007/2017 (A/H5N6) segment 4 (HA) 3142.3 0.000000e+00 1703/1704 (99%) EPI1119870 A/Duck/Netherlands/17017237-001-005/2017 (A/H5N6) segment 4 (HA) 3136.7 0.000000e+00 1702/1704 (99%) EPI1119862 A/Duck/Netherlands/17017236-001-005/2017 (A/H5N6) segment 4 (HA) 3136.7 0.000000e+00 1702/1704 (99%) EPI1131096 A/Black-headed Gull/Netherlands/29/2017 (A/H5N6) segment 4 (HA) 3131.2 0.000000e+00 1701/1704 (99%) EPI1123245 A/Mute Swan/Netherlands/17017377-001/2017 (A/H5N6) segment 4 (HA) 3131.2 0.000000e+00 1701/1704 (99%) EPI1123237 A/Mute Swan/Netherlands/17017367-012/2017 (A/H5N6) segment 4 (HA) 3131.2 0.000000e+00 1701/1704 (99%) EPI1144342 A/pochard_duck/England/AVP_18_003254/2018 (A/H5N6) segment 4 (HA) 3125.7 0.000000e+00 1700/1704 (99%) EPI1139714 A/common_pochard/Germany-BY/AR09-L02421/2017 (A/H5N6) segment 4 (HA) 3120.1 0.000000e+00 1698/1704 (99%) EPI1131088 A/Great Black-backed Gull/Netherlands/1/2017 (A/H5N6) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI1019638 A/Eur_Wig/NL-Zoeterwoude/16015702-010/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI1019590 A/Eur_Wig/NL-Reeuwijk/16015903-003/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI1019582 A/Eur_Wig/NL-Leidschendam/16015697-007/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI1019550 A/Eur_Wig/NL-Gouda/16015824-001/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI1019518 A/Eur_Wig/NL-De Waal (Texel)/16014891-004/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI1019510 A/Eur_Wig/NL-De Waal (Texel)/16014891-003/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI943320 A/pochard_duck/England/SA12_157809/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI1019734 A/Mal/NL-IJsselmuiden/16015448-002/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI1019678 A/Grey_Go/NL-Groot-Ammers/16015901-012/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI1019646 A/Eur_Wig/NL-Zwolle/16015820-002/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI1019622 A/Eur_Wig/NL-West Graftdijk/16015746-003/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI1019606 A/Eur_Wig/NL-Vianen/16015917-006/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI1019430 A/Ch/NL-Rhenen/16016141-006/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI1019406 A/Ch/NL-Boven Leeuwen/16016151-006-010/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI959413 A/Eurasian Wigeon/Netherlands/4/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI942943 A/chicken/Wales/000023/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI1019478 A/Dk/NL-Kamperveen/16016104-001-005/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI1019438 A/Ch/NL-Zoeterwoude/16016484-021-025/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI954583 A/chicken/Italy/17VIR653-12/2017 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI868848 A/turkey/England/052131/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI1019630 A/Eur_Wig/NL-Wormer/16016143-002/2016 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI1019614 A/Eur_Wig/NL-Walterswald/16015923-003/2016 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI1007675 A/peacock/Belgium/1017/2017 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI990770 A/eurasian wigeon/Germany-NI/AR249-L02143/2017 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI954877 A/Mallard/Hungary/1574a/2017 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI954861 A/Mallard/Hungary/1574b/2017 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI954607 A/turkey/Italy/17VIR1452-22/2017 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI954575 A/turkey/Italy/17VIR576-11/2017 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI954559 A/swan/Italy/17VIR537-2/2017 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI869687 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 4 (HA) 3055.5 0.000000e+00 1687/1704 (99%) EPI1045611 A/chicken/Rostov/44/2017 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI1019534 A/Eur_Wig/NL-Enumatil-Groningen/16015704-001/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI1019526 A/Eur_Wig/NL-Drieborg (Dollard)/16015513-001/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI990794 A/greylag goose/Germany-NI/AR1395-L02144/2017 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI969347 A/turkey/Germany-BB/R377ff/2017 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI961449 A/gadwall/Kurgan/2442/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI954813 A/Greylag_goose/Hungary/320/2017 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI942935 A/turkey/England/003778/2017 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI909452 A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI909444 A/mute swan/Krasnodar/25/2017 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI869931 A/turkey/Poland/83/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI869930 A/turkey/Poland/78/2016 (A/H5N8) segment 4 (HA) 3049.9 0.000000e+00 1686/1704 (98%) EPI1019718 A/M_Swan/NL-Roggebotsluis/16014462-019/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI1019558 A/Eur_Wig/NL-Greonterp/16015653-001/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI1019494 A/Dk/NL-Stolwijk/16016291-016-020/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI1019398 A/Ch/NL-Abbega/X16015736/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI1007667 A/chicken/Belgium/807/2017 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI990802 A/greylag goose/Germany-NI/AR703-L02138/2017 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI931145 A/duck/Czech Republic/1467-17/2017 (H5N8) (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI916604 A/bronze turkey/Czech Republic/1414-17/2017 (H5N8) (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI909436 A/goose/Krasnodar/3144/2017 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI859650 A/wild duck/Germany-BW/R8455/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI907346 A/domestic duck/Germany-BB/R681ff/2017 (A/H5N8) segment 4 (HA) 3044.4 0.000000e+00 1684/1702 (98%) EPI1021106 A/mute swan/Czech Republic/1296-17_1/2017 (H5N8) (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI1019766 A/T_Dk/NL-Almeerder Zand/16014341-003/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI969254 A/Tufted Duck/Switzerland/V237/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI931207 A/turkey/Germany-BB/R234ff/2017 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI909428 A/turkey/Rostov/11/2017 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI909404 A/chicken/Voronezh/18/2017 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI909396 A/long-eared owl/Voronezh/16/2017 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI909388 A/Ural owl/Voronezh/14/2017 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI909380 A/long-eared owl/Voronezh/15/2017 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI888088 A/wigeon/Italy/17VIR57-3/2017 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI869940 A/herring gull/Poland/84/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI869936 A/chicken/Kalmykia/2661/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI861011 A/turkey/Germany-SH/R8595/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI860401 A/tufted_duck/Germany/AR8459-L01988/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI859653 A/tufted_duck/Germany/AR8444-L01986/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI859212 A/tufted_duck/Germany-SH/R8446/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI1040223 A/chicken/Italy/17VIR3078/2017 (A/H5N8) segment 4 (HA) 3038.9 0.000000e+00 1684/1704 (98%) EPI909364 A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 4 (HA) 3038.9 0.000000e+00 1684/1704 (98%) EPI1061371 A/chicken/Belgium/5990/2017 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI1019878 A/Teal/NL-Ferwert/16015273-013/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI1019870 A/T_Dk/NL-Zuidoost Beemster/16014148-009/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI1019862 A/T_Dk/NL-Zuidoost Beemster/16014148-002/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI1019790 A/T_Dk/NL-Rotterdam/16014155-001/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI1019782 A/T_Dk/NL-Roggebotsluis/16014462-015/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI1019774 A/T_Dk/NL-Monnickendam/16013865-006-008/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI1019758 A/Sea_eagle/NL-Assen/16015398-002/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI1019750 A/P_falcon/NL-Vrouwenpolder (Zeeland)/16015510-001/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI1019726 A/Magpie/NL-Volendam/16014331-002/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI1019710 A/L-bl-ba-gull/NL-Sovon/16014324-014/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI1019702 A/Gull10/NL-Marker Wadden/16014466-014/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI1019670 A/Gr_bk_bd_gull/NL-Slootdorp/16014102-005/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI1019542 A/Eur_Wig/NL-Ferwert/16015273-002/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI1019446 A/Crow/NL-Oostwoud/16015372-004/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI1019382 A/Buzzard/NL-Durgerdam/16015100-004/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI954783 A/Common_tern/Hungary/8187/2017 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI954671 A/Duck/Hungary/1588/2017 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%)
niman Posted January 26, 2018 Author Report Posted January 26, 2018 Descriptions Align Segment-ID Name Score E-Value Identity EPI1144336 A/mute_swan/England/AVP_18_001986/2017 (A/H5N6) segment 6 (NA) 2603.0 0.000000e+00 1409/1409 (100%) EPI1144352 A/canada_goose/England/AV58_18OPpoolEP1/2018 (A/H5N6) segment 6 (NA) 2592.0 0.000000e+00 1407/1409 (99%) EPI1123260 A/Tufted Duck/Netherlands/17017367-007/2017 (A/H5N6) segment 6 (NA) 2592.0 0.000000e+00 1407/1409 (99%) EPI1123244 A/Mute Swan/Netherlands/17017377-001/2017 (A/H5N6) segment 6 (NA) 2586.4 0.000000e+00 1406/1409 (99%) EPI1123236 A/Mute Swan/Netherlands/17017367-012/2017 (A/H5N6) segment 6 (NA) 2586.4 0.000000e+00 1406/1409 (99%) EPI1119872 A/Duck/Netherlands/17017237-001-005/2017 (A/H5N6) segment 6 (NA) 2586.4 0.000000e+00 1406/1409 (99%) EPI1119864 A/Duck/Netherlands/17017236-001-005/2017 (A/H5N6) segment 6 (NA) 2586.4 0.000000e+00 1406/1409 (99%) EPI1144344 A/pochard_duck/England/AVP_18_003254/2018 (A/H5N6) segment 6 (NA) 2580.9 0.000000e+00 1405/1409 (99%) EPI1139716 A/common_pochard/Germany-BY/AR09-L02421/2017 (A/H5N6) segment 6 (NA) 2564.3 0.000000e+00 1402/1409 (99%) EPI1131098 A/Black-headed Gull/Netherlands/29/2017 (A/H5N6) segment 6 (NA) 2560.6 0.000000e+00 1390/1392 (99%) EPI1131090 A/Great Black-backed Gull/Netherlands/1/2017 (A/H5N6) segment 6 (NA) 2551.3 0.000000e+00 1395/1402 (99%) EPI1129918 A/Black-headed Gull/Netherlands/29/2017 (A/H5N6) segment 6 (NA) 2462.7 0.000000e+00 1337/1339 (99%) EPI1122895 A/chicken/Greece/39_2017b/2017 (A/H5N6) segment 6 (NA) 2442.4 0.000000e+00 1380/1409 (97%) EPI1122887 A/chicken/Greece/39_2017a/2017 (A/H5N6) segment 6 (NA) 2438.7 0.000000e+00 1379/1409 (97%) EPI1122879 A/chicken/Greece/39_2017/2017 (A/H5N6) segment 6 (NA) 2438.7 0.000000e+00 1379/1409 (97%) EPI1129917 A/Great Black-backed Gull/Netherlands/1/2017 (A/H5N6) segment 6 (NA) 2403.6 0.000000e+00 1315/1322 (99%) EPI1127540 A/mute swan/Shimane/3211A001/2017 (A/H5N6) segment 6 (NA) 2403.6 0.000000e+00 1373/1409 (97%) EPI1119073 A/spoonbill/Taiwan/DB645/2017 (A/H5N6) segment 6 (NA) 2398.1 0.000000e+00 1370/1406 (97%) EPI1011098 A/barnacle goose/Netherlands/2/2014 (A/H3N6) segment 6 (NA) 2381.5 0.000000e+00 1371/1411 (97%) EPI1036189 A/duck/Moscow/4652/2011 (A/H4N6) segment 6 (NA) 2300.2 0.000000e+00 1356/1411 (96%) EPI890326 A/mallard duck/Netherlands/19/2012 (A/H4N6) segment 6 (NA) 2281.7 0.000000e+00 1353/1411 (95%) EPI1036196 A/duck/Moscow/4781/2012 (A/H4N6) segment 6 (NA) 2276.2 0.000000e+00 1352/1411 (95%) EPI1145199 A/teal/Croatia/86-25/2012 (A/H4N6) segment 6 (NA) 2270.7 0.000000e+00 1351/1411 (95%) EPI891032 A/mallard duck/Netherlands/30/2014 (A/H4N6) segment 6 (NA) 2220.8 0.000000e+00 1343/1412 (95%) EPI1133993 A/duck/Mongolia/262/2011 (A/H4N6) segment 6 (NA) 2215.3 0.000000e+00 1343/1413 (95%) EPI823917 A/teal/Chany Lake/106_ cloaca/2012 (A/H4N6) segment 6 (NA) 2215.3 0.000000e+00 1343/1413 (95%) EPI823909 A/teal/Chany Lake/104_ feather/2012 (A/H4N6) segment 6 (NA) 2215.3 0.000000e+00 1343/1413 (95%) EPI823901 A/teal/Chany Lake/104_cloaca/2012 (A/H4N6) segment 6 (NA) 2215.3 0.000000e+00 1343/1413 (95%) EPI823790 A/shoveller/Chany Lake/101/2012 (A/H4N6) segment 6 (NA) 2215.3 0.000000e+00 1343/1413 (95%) EPI470232 A/duck/Yunnan/87/2007 (A/H7N6) segment 6 (NA) 2215.3 0.000000e+00 1342/1412 (95%) EPI692466 A/duck/Henan/S1091/2010 (A/H4N6) segment 6 (NA) 2209.7 0.000000e+00 1341/1412 (94%) EPI533781 A/Caspian seal/Russia/T1/2012 (A/H4N6) segment 6 (NA) 2209.7 0.000000e+00 1341/1412 (94%) EPI533775 A/Caspian seal/Russia/1884/2002 (A/H4N6) segment 6 (NA) 2209.7 0.000000e+00 1341/1412 (94%) EPI485322 A/eurasian wigeon/Mongolia/340V/2009 (A/H4N6) segment 6 (NA) 2209.7 0.000000e+00 1341/1412 (94%) EPI692506 A/duck/Hunan/S1012/2009 (A/H4N6) segment 6 (NA) 2198.6 0.000000e+00 1339/1412 (94%) EPI1014700 A/mallard duck/Netherlands/7/2006 (A/H10N6) segment 6 (NA) 2193.1 0.000000e+00 1338/1412 (94%) EPI692346 A/chicken/Hunan/S1267/2010 (A/H4N6) segment 6 (NA) 2193.1 0.000000e+00 1338/1412 (94%) EPI692338 A/chicken/Hunan/S1248/2010 (A/H4N6) segment 6 (NA) 2193.1 0.000000e+00 1338/1412 (94%) EPI414148 A/duck/Jiangsu/4/2010 (A/H3N6) segment 6 (NA) 2193.1 0.000000e+00 1338/1412 (94%) EPI407862 A/Khaki Campbell duck/Karachi/NARC-23963/2010 (A/H4N6) segment 6 (NA) 2189.4 0.000000e+00 1337/1412 (94%) EPI372354 A/teal/Egypt/09888-NAMRU3/2005 (A/H4N6) segment 6 (NA) 2189.4 0.000000e+00 1338/1412 (94%) EPI1013418 A/mallard duck/Netherlands/8/2006 (A/H10N6) segment 6 (NA) 2187.6 0.000000e+00 1337/1412 (94%) EPI395392 A/chicken/India/WB-NIV101006/2009 (A/H4N6) segment 6 (NA) 2187.6 0.000000e+00 1337/1412 (94%) EPI296530 A/mallard/Netherlands/4/2006 (A/H10N6) segment 6 (NA) 2187.6 0.000000e+00 1337/1412 (94%) EPI890683 A/mallard duck/Netherlands/6/2006 (A/H4N6) segment 6 (NA) 2182.0 0.000000e+00 1336/1412 (94%) EPI243479 A/duck/Vietnam/OIE-2454/2009 (A/H4N6) segment 6 (NA) 2182.0 0.000000e+00 1337/1413 (94%) EPI401303 A/duck/Korea/DY104/2007 (A/H4N6) segment 6 (NA) 2176.5 0.000000e+00 1335/1412 (94%) EPI168523 A/common pochard/Aktau/1455/2006 (A/H4N6) segment 6 (NA) 2170.9 0.000000e+00 1335/1413 (94%) EPI168522 A/coot/Aktau/1454/2006 (A/H4N6) segment 6 (NA) 2165.4 0.000000e+00 1335/1414 (94%) EPI513237 A/mallard/Sweden/104925/2009 (A/H4N6) segment 6 (NA) 2159.9 0.000000e+00 1333/1413 (94%) EPI704432 A/duck/Mongolia/769/2015 (A/H4N6) segment 6 (NA) 2154.3 0.000000e+00 1334/1415 (94%) EPI540366 A/duck/Bangladesh/1521/2009 (A/H4N6) segment 6 (NA) 2154.3 0.000000e+00 1332/1413 (94%) EPI513749 A/mallard/Sweden/79978/2008 (A/H4N6) segment 6 (NA) 2148.8 0.000000e+00 1330/1412 (94%) EPI485357 A/ruddy shelduck/Mongolia/592/2010 (A/H8N6) segment 6 (NA) 2148.8 0.000000e+00 1331/1413 (94%) EPI395393 A/chicken/India/WB-NIV101018/2009 (A/H4N6) segment 6 (NA) 2143.2 0.000000e+00 1330/1413 (94%) EPI889824 A/mallard duck/Netherlands/27/2009 (A/H4N6) segment 6 (NA) 2137.7 0.000000e+00 1329/1413 (94%) EPI513568 A/mallard/Sweden/80348/2008 (A/H0) segment 6 (NA) 2137.7 0.000000e+00 1329/1413 (94%) EPI513170 A/mallard/Sweden/105012/2009 (A/H4N6) segment 6 (NA) 2137.7 0.000000e+00 1329/1413 (94%) EPI284397 A/mallard/Czech Republic/12652/2007 (A/H4N6) segment 6 (NA) 2137.7 0.000000e+00 1326/1409 (94%) EPI704293 A/duck/Mongolia/127/2015 (A/H4N6) segment 6 (NA) 2132.2 0.000000e+00 1330/1415 (93%) EPI704269 A/duck/Mongolia/101/2015 (A/H4N6) segment 6 (NA) 2132.2 0.000000e+00 1330/1415 (93%) EPI618783 A/mallard/Sweden/93475/2009 (A/H10N6) segment 6 (NA) 2132.2 0.000000e+00 1329/1414 (93%) EPI540374 A/duck/Bangladesh/1283/2008 (A/H4N6) segment 6 (NA) 2132.2 0.000000e+00 1329/1414 (93%) EPI513546 A/mallard/Sweden/101010/2009 (A/H4N6) segment 6 (NA) 2132.2 0.000000e+00 1328/1413 (93%) EPI513461 A/mallard/Sweden/101632/2009 (A/H4N6) segment 6 (NA) 2132.2 0.000000e+00 1328/1413 (93%) EPI513454 A/mallard/Sweden/101603/2009 (A/H4N6) segment 6 (NA) 2132.2 0.000000e+00 1328/1413 (93%) EPI513433 A/mallard/Sweden/101564/2009 (A/H4N6) segment 6 (NA) 2132.2 0.000000e+00 1328/1413 (93%) EPI513431 A/mallard/Sweden/101785/2009 (A/H4N6) segment 6 (NA) 2132.2 0.000000e+00 1328/1413 (93%) EPI513415 A/mallard/Sweden/101733/2009 (A/H4N6) segment 6 (NA) 2132.2 0.000000e+00 1328/1413 (93%) EPI513408 A/mallard/Sweden/101663/2009 (A/H4N6) segment 6 (NA) 2132.2 0.000000e+00 1328/1413 (93%) EPI513394 A/mallard/Sweden/101654/2009 (A/H4N6) segment 6 (NA) 2132.2 0.000000e+00 1328/1413 (93%) EPI513358 A/mallard/Sweden/101831/2009 (A/H4N6) segment 6 (NA) 2132.2 0.000000e+00 1328/1413 (93%) EPI513341 A/mallard/Sweden/104681/2009 (A/H4N6) segment 6 (NA) 2132.2 0.000000e+00 1328/1413 (93%) EPI513230 A/mallard/Sweden/104839/2009 (A/H4N6) segment 6 (NA) 2132.2 0.000000e+00 1328/1413 (93%) EPI513163 A/mallard/Sweden/105011/2009 (A/H4N6) segment 6 (NA) 2132.2 0.000000e+00 1328/1413 (93%) EPI470233 A/wild waterfowl/Hong Kong/MPM3375/2011 (A/H7N6) segment 6 (NA) 2132.2 0.000000e+00 1327/1412 (93%) EPI461617 A/duck/Hunan/S11893/2012 (A/H4N6) segment 6 (NA) 2132.2 0.000000e+00 1328/1413 (93%) EPI1013677 A/mallard duck/Netherlands/10/2013 (A/H4N6) segment 6 (NA) 2126.6 0.000000e+00 1327/1413 (93%) EPI1011235 A/mallard duck/Netherlands/22/2011 (A/H4N6) segment 6 (NA) 2126.6 0.000000e+00 1327/1413 (93%) EPI692554 A/duck/Jiangxi/S2443/2012 (A/H4N6) segment 6 (NA) 2126.6 0.000000e+00 1327/1413 (93%) EPI540358 A/duck/Bangladesh/1766/2010 (A/H4N6) segment 6 (NA) 2126.6 0.000000e+00 1326/1412 (93%) EPI514901 A/mallard/Sweden/105093/2009 (A/H4N6) segment 6 (NA) 2126.6 0.000000e+00 1327/1413 (93%) EPI513514 A/mallard/Sweden/101524/2009 (A/H4N6) segment 6 (NA) 2126.6 0.000000e+00 1328/1414 (93%) EPI513507 A/mallard/Sweden/101504/2009 (A/H4N6) segment 6 (NA) 2126.6 0.000000e+00 1327/1413 (93%) EPI513493 A/mallard/Sweden/101329/2009 (A/H4N6) segment 6 (NA) 2126.6 0.000000e+00 1327/1413 (93%) EPI513475 A/mallard/Sweden/101642/2009 (A/H4N6) segment 6 (NA) 2126.6 0.000000e+00 1327/1413 (93%) EPI513468 A/mallard/Sweden/101640/2009 (A/H4N6) segment 6 (NA) 2126.6 0.000000e+00 1328/1414 (93%) EPI513424 A/mallard/Sweden/101782/2009 (A/H0) segment 6 (NA) 2126.6 0.000000e+00 1328/1414 (93%) EPI513386 A/mallard/Sweden/102029/2009 (A/H4N6) segment 6 (NA) 2126.6 0.000000e+00 1327/1413 (93%) EPI513379 A/mallard/Sweden/102024/2009 (A/H4N6) segment 6 (NA) 2126.6 0.000000e+00 1327/1413 (93%) EPI513334 A/mallard/Sweden/102157/2009 (A/H4N6) segment 6 (NA) 2126.6 0.000000e+00 1327/1413 (93%) EPI513327 A/mallard/Sweden/102124/2009 (A/H4N6) segment 6 (NA) 2126.6 0.000000e+00 1328/1414 (93%) EPI513320 A/mallard/Sweden/102114/2009 (A/H4N6) segment 6 (NA) 2126.6 0.000000e+00 1327/1413 (93%) EPI513306 A/mallard/Sweden/102045/2009 (A/H4N6) segment 6 (NA) 2126.6 0.000000e+00 1327/1413 (93%) EPI513244 A/mallard/Sweden/104931/2009 (A/H4N6) segment 6 (NA) 2126.6 0.000000e+00 1327/1413 (93%) EPI513216 A/mallard/Sweden/104793/2009 (A/H4N6) segment 6 (NA) 2126.6 0.000000e+00 1328/1414 (93%) EPI513209 A/mallard/Sweden/104690/2009 (A/H4N6) segment 6 (NA) 2126.6 0.000000e+00 1328/1414 (93%) EPI513205 A/mallard/Sweden/102250/2009 (A/H4N6) segment 6 (NA) 2126.6 0.000000e+00 1328/1414 (93%) EPI513184 A/mallard/Sweden/105516/2009 (A/H4N6) segment 6 (NA) 2126.6 0.000000e+00 1327/1413 (93%) EPI513177 A/mallard/Sweden/105137/2009 (A/H4N6) segment 6 (NA) 2126.6 0.000000e+00 1327/1413 (93%)
niman Posted January 26, 2018 Author Report Posted January 26, 2018 Descriptions Align Segment-ID Name Score E-Value Identity EPI1144353 A/canada_goose/England/AV58_18OPpoolEP1/2018 (A/H5N6) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%) EPI1144345 A/pochard_duck/England/AVP_18_003254/2018 (A/H5N6) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%) EPI1144337 A/mute_swan/England/AVP_18_001986/2017 (A/H5N6) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%) EPI1139717 A/common_pochard/Germany-BY/AR09-L02421/2017 (A/H5N6) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%) EPI1123256 A/Tufted Duck/Netherlands/17017367-007/2017 (A/H5N6) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%) EPI1123240 A/Mute Swan/Netherlands/17017377-001/2017 (A/H5N6) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%) EPI1123232 A/Mute Swan/Netherlands/17017367-012/2017 (A/H5N6) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%) EPI1119865 A/Duck/Netherlands/17017236-001-005/2017 (A/H5N6) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%) EPI1119873 A/Duck/Netherlands/17017237-001-005/2017 (A/H5N6) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%) EPI1131091 A/Great Black-backed Gull/Netherlands/1/2017 (A/H5N6) segment 7 (MP) 1797.9 0.000000e+00 979/982 (99%) EPI1032553 A/Mulard_duck/Hungary/59163/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI1032527 A/Mulard_duck/Hungary/62902/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI1032519 A/Mulard_duck/Hungary/60369/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI1032511 A/Goose/Hungary/59763/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI1032503 A/Goose/Hungary/17985/2017 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI1032495 A/Goose/Hungary/17580/2017 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI1032487 A/Goose/Hungary/17051/2017 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI1032479 A/Goose/Hungary/15729/2017 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI962050 A/Duck/Hungary/55764/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI962039 A/Duck/Hungary/54738/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI961503 A/turkey/Italy/17VIR1574-1/2017 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI959534 A/Mute swan/Hungary/6276/2017 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI959427 A/chicken/Poland/79A/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI956123 A/Goose/Hungary/59712/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI954832 A/Mute swan/Hungary/3137/2017 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI954730 A/Mute swan/Hungary/3513/2017 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI954722 A/Mute swan/Hungary/3139/2017 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI954714 A/Mute swan/Hungary/2825/2017 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI954682 A/Mute swan/Hungary/1955/2017 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI954650 A/Duck/Hungary/984/2017 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI954634 A/Harris Hawk/Hungary/120/2017 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI954594 A/turkey/Italy/17VIR1338-3/2017 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI953518 A/mallard/Hungary/57857/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI866980 A/duck/Hungary/60441/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI860521 A/goose/Hungary/55128/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI860516 A/Mulard_duck/Hungary/54494/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI859202 A/mute_swan/Hungary/51049/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI1085345 A/goose/Czech Republic/136-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1757.3 0.000000e+00 972/982 (98%) EPI969267 A/chicken/Czech Republic/2644-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1757.3 0.000000e+00 972/982 (98%) EPI931199 A/chicken/Czech Republic/1896-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1757.3 0.000000e+00 972/982 (98%) EPI931112 A/mute swan/Czech Republic/879-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1757.3 0.000000e+00 972/982 (98%) EPI930844 A/chicken/Czech Republic/55-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1757.3 0.000000e+00 972/982 (98%) EPI930839 A/mute swan/Czech Republic/54-17_2/2017 (H5N8) (A/H5N8) segment 7 (MP) 1757.3 0.000000e+00 972/982 (98%) EPI1126346 A/mallard/Czech Republic/136-17_2/2017 (H5N8) (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI1116593 A/mute swan/Czech Republic/54-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI1087641 A/chicken/Czech Republic/988-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI1032471 A/Goose/Hungary/17261/2017 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI1002886 A/black swan/Germany-BW/R1364/2017 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI975870 A/white stork/Germany-TH/R1149/2017 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI975869 A/tawny owl/Germany-SN/R1186/2017 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 970/980 (98%) EPI962060 A/Turkey/Hungary/53136/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI961520 A/chicken/Italy/17VIR1751-3/2017 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI961512 A/chicken/Italy/17VIR1684-2/2017 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI959558 A/Rook/Hungary/4975/2017 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI959526 A/Mute swan/Hungary/6092/2017 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI959518 A/Cormorant/Hungary/6102/2017 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI959421 A/domestic goose/Poland/33/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI954864 A/White_fronted_goose/Hungary/801/2017 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI954840 A/Mallard/Hungary/5821/2017 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI954824 A/Chicken/Hungary/1751/2017 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI954746 A/Chicken/Hungary/2496/2017 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI954738 A/Mute swan/Hungary/3542/2017 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI954706 A/Mute swan/Hungary/2508/2017 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI954698 A/Mute swan/Hungary/2193/2017 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI954658 A/Goose/Hungary/1030/2017 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI954626 A/Mute swan/Hungary/119/2017 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI954586 A/turkey/Italy/17VIR973-2/2017 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI954534 A/Goose/Hungary/65817/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI869812 A/duck/France/161108h/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI859210 A/domestic_turkey/Hungary/53433/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI1127018 A/mallard/Czech Republic/1226-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1751.7 0.000000e+00 971/982 (98%) EPI1126383 A/mallard/Czech Republic/1219-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1751.7 0.000000e+00 971/982 (98%) EPI1126370 A/mute swan/Czech Republic/987-17_2/2017 (H5N8) (A/H5N8) segment 7 (MP) 1751.7 0.000000e+00 971/982 (98%) EPI1126361 A/mute swan/Czech Republic/1156-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1751.7 0.000000e+00 971/982 (98%) EPI1126360 A/mute swan/Czech Republic/1155-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1751.7 0.000000e+00 971/982 (98%) EPI1126357 A/mute swan/Czech Republic/1060-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1751.7 0.000000e+00 971/982 (98%) EPI1126351 A/mute swan/Czech Republic/967-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1751.7 0.000000e+00 971/982 (98%) EPI1126349 A/mute swan/Czech Republic/572-17_3/2017 (H5N8) (A/H5N8) segment 7 (MP) 1751.7 0.000000e+00 971/982 (98%) EPI1117249 A/mute swan/Czech Republic/964-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1751.7 0.000000e+00 971/982 (98%) EPI1081897 A/turkey/Czech Republic/38-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1751.7 0.000000e+00 971/982 (98%) EPI987885 A/chicken/Republic of Macedonia/AR1167-L02131/2017 (A/H5N8) segment 7 (MP) 1751.7 0.000000e+00 971/982 (98%) EPI969264 A/chicken/Czech Republic/2643-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1751.7 0.000000e+00 971/982 (98%) EPI969261 A/mute swan/Czech Republic/1813-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1751.7 0.000000e+00 971/982 (98%) EPI961530 A/goose/Czech Republic/821-17_2/2017 (H5N8) (A/H5N8) segment 7 (MP) 1751.7 0.000000e+00 971/982 (98%) EPI961487 A/mute swan/Czech Republic/581-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1751.7 0.000000e+00 971/982 (98%) EPI961481 A/mute swan/Czech Republic/499-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1751.7 0.000000e+00 971/982 (98%) EPI931196 A/chicken/Czech Republic/1863-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1751.7 0.000000e+00 971/982 (98%) EPI930842 A/Indian Runner Duck/Czech Republic/749-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1751.7 0.000000e+00 971/982 (98%) EPI919638 A/chicken/Czech Republic/585-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1751.7 0.000000e+00 971/982 (98%) EPI917482 A/mute swan/Czech Republic/722-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1751.7 0.000000e+00 971/982 (98%) EPI916524 A/mallard/Czech Republic/722-17_2/2017 (H5N8) (A/H5N8) segment 7 (MP) 1751.7 0.000000e+00 971/982 (98%) EPI916387 A/mute swan/Czech Republic/653-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1751.7 0.000000e+00 971/982 (98%) EPI888279 A/turkey/Czech Republic/38-17_5/2017 (H5N8) (A/H5N8) segment 7 (MP) 1749.9 0.000000e+00 970/982 (98%) EPI1032543 A/Goose/Hungary/64909/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 971/983 (98%) EPI1032535 A/Goose/Hungary/63743/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 971/983 (98%) EPI1019529 A/Eur_Wig/NL-Enumatil-Groningen/16015704-001/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 971/983 (98%) EPI961452 A/gadwall/Kurgan/2442/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 971/983 (98%) EPI954816 A/GuineaFowl/Hungary/596/2017 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 971/983 (98%) EPI954690 A/Turkey/Hungary/2030/2017 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 971/983 (98%) EPI954674 A/Greylag_goose/Hungary/1941/2017 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 971/983 (98%)
niman Posted January 26, 2018 Author Report Posted January 26, 2018 EPI1144331 A/mute_swan/England/AVP_18_001986/2017 (A/H5N6) segment 1 (PB2) 4211.5 0.000000e+00 2280/2280 (100%) EPI1123242 A/Mute Swan/Netherlands/17017377-001/2017 (A/H5N6) segment 1 (PB2) 4205.9 0.000000e+00 2279/2280 (99%) EPI1119867 A/Duck/Netherlands/17017237-001-005/2017 (A/H5N6) segment 1 (PB2) 4205.9 0.000000e+00 2279/2280 (99%) EPI1119859 A/Duck/Netherlands/17017236-001-005/2017 (A/H5N6) segment 1 (PB2) 4205.9 0.000000e+00 2279/2280 (99%) EPI1139711 A/common_pochard/Germany-BY/AR09-L02421/2017 (A/H5N6) segment 1 (PB2) 4200.4 0.000000e+00 2278/2280 (99%) EPI1131093 A/Black-headed Gull/Netherlands/29/2017 (A/H5N6) segment 1 (PB2) 4200.4 0.000000e+00 2278/2280 (99%) EPI1123258 A/Tufted Duck/Netherlands/17017367-007/2017 (A/H5N6) segment 1 (PB2) 4200.4 0.000000e+00 2278/2280 (99%) EPI1123234 A/Mute Swan/Netherlands/17017367-012/2017 (A/H5N6) segment 1 (PB2) 4200.4 0.000000e+00 2278/2280 (99%) EPI1144347 A/canada_goose/England/AV58_18OPpoolEP1/2018 (A/H5N6) segment 1 (PB2) 4191.2 0.000000e+00 2276/2280 (99%) EPI1144339 A/pochard_duck/England/AVP_18_003254/2018 (A/H5N6) segment 1 (PB2) 4189.3 0.000000e+00 2276/2280 (99%) EPI889820 A/mallard duck/Netherlands/15/2011 (A/H6N8) segment 1 (PB2) 3917.9 0.000000e+00 2227/2280 (97%) EPI889410 A/Eurasian teal/Netherlands/1/2011 (A/H3N8) segment 1 (PB2) 3917.9 0.000000e+00 2227/2280 (97%) EPI889594 A/mallard duck/Netherlands/20/2011 (A/H6N8) segment 1 (PB2) 3906.8 0.000000e+00 2225/2280 (97%) EPI890266 A/greater white-fronted goose/Netherlands/6/2011 (A/H6N8) segment 1 (PB2) 3895.7 0.000000e+00 2223/2280 (97%) EPI1010712 A/white-fronted goose/Netherlands/5/2011 (A/H6N8) segment 1 (PB2) 3884.6 0.000000e+00 2221/2280 (97%) EPI1014087 A/mallard duck/Georgia/11/2011 (A/H1N1) segment 1 (PB2) 3873.5 0.000000e+00 2219/2280 (97%) EPI1013538 A/mallard duck/Netherlands/18/2012 (A/H4N2) segment 1 (PB2) 3873.5 0.000000e+00 2219/2280 (97%) EPI1011210 A/mallard duck/Netherlands/16/2012 (A/H3N2) segment 1 (PB2) 3873.5 0.000000e+00 2219/2280 (97%) EPI618045 A/mallard/Republic of Georgia/12/2011 (A/H10N4) segment 1 (PB2) 3873.5 0.000000e+00 2219/2280 (97%) EPI889776 A/mallard duck/Netherlands/32/2011 (A/H5N2) segment 1 (PB2) 3868.0 0.000000e+00 2219/2281 (97%) EPI677988 A/chicken/Italy/13VIR4527-12/2013 (A/H7N7) segment 1 (PB2) 3862.5 0.000000e+00 2217/2280 (97%) EPI560338 A/Italy/3/2013 (A/H7N7) segment 1 (PB2) 3862.5 0.000000e+00 2217/2280 (97%) EPI678028 A/chicken/Italy/13VIR4541-7/2013 (A/H7N7) segment 1 (PB2) 3858.8 0.000000e+00 2216/2280 (97%) EPI678004 A/chicken/Italy/13VIR4541-32/2013 (A/H7N7) segment 1 (PB2) 3858.8 0.000000e+00 2216/2280 (97%) EPI677996 A/chicken/Italy/13VIR4527-11/2013 (A/H7N7) segment 1 (PB2) 3858.8 0.000000e+00 2216/2280 (97%) EPI678076 A/chicken/Italy/13VIR5051-3/2013 (A/H7N7) segment 1 (PB2) 3856.9 0.000000e+00 2216/2280 (97%) EPI678060 A/chicken/Italy/13VIR4774/2013 (A/H7N7) segment 1 (PB2) 3856.9 0.000000e+00 2216/2280 (97%) EPI678052 A/chicken/Italy/13VIR4603-1/2013 (A/H7N7) segment 1 (PB2) 3856.9 0.000000e+00 2216/2280 (97%) EPI678036 A/chicken/Italy/13VIR4541-8/2013 (A/H7N7) segment 1 (PB2) 3856.9 0.000000e+00 2216/2280 (97%) EPI678012 A/chicken/Italy/13VIR4541-33/2013 (A/H7N7) segment 1 (PB2) 3855.1 0.000000e+00 2215/2280 (97%) EPI678068 A/chicken/Italy/13VIR5051-1/2013 (A/H7N7) segment 1 (PB2) 3853.2 0.000000e+00 2215/2280 (97%) EPI891105 A/mallard duck/Netherlands/23/2012 (A/H11N9) segment 1 (PB2) 3851.4 0.000000e+00 2215/2280 (97%) EPI816828 A/turkey/Poland/14/2013 (A/H9N2) segment 1 (PB2) 3851.4 0.000000e+00 2216/2281 (97%) EPI678084 A/chicken/Italy/13VIR5091/2013 (A/H7N7) segment 1 (PB2) 3851.4 0.000000e+00 2215/2280 (97%) EPI678044 A/chicken/Italy/13VIR4541-9/2013 (A/H7N7) segment 1 (PB2) 3851.4 0.000000e+00 2215/2280 (97%) EPI678020 A/chicken/Italy/13VIR4541-34/2013 (A/H7N7) segment 1 (PB2) 3851.4 0.000000e+00 2215/2280 (97%) EPI678092 A/turkey/Italy/13VIR4678-1/2013 (A/H7N7) segment 1 (PB2) 3849.5 0.000000e+00 2214/2280 (97%) EPI1013811 A/mallard duck/Netherlands/10/2013 (A/H4N6) segment 1 (PB2) 3845.8 0.000000e+00 2215/2281 (97%) EPI341793 A/mallard/France/090360/2009 (A/H9N2) segment 1 (PB2) 3845.8 0.000000e+00 2214/2280 (97%) EPI773762 A/chicken/Netherlands/16007311-037041/2016 (A/H7N9) segment 1 (PB2) 3840.3 0.000000e+00 2213/2280 (97%) EPI774511 A/chicken/Netherlands/15007212/15 (A/H10N7) segment 1 (PB2) 3823.7 0.000000e+00 2210/2280 (96%) EPI617974 A/common Teal/Republic of Georgia/1/2011 (A/H3N8) segment 1 (PB2) 3823.7 0.000000e+00 2211/2281 (96%) EPI718523 A/Anas platyrhynchos/Belgium/17330cls42/2013 (A/H5N2) segment 1 (PB2) 3818.1 0.000000e+00 2209/2280 (96%) EPI890191 A/mallard duck/Netherlands/30/2014 (A/H4N6) segment 1 (PB2) 3812.6 0.000000e+00 2208/2280 (96%) EPI816836 A/turkey/Poland/08/2014 (A/H9N2) segment 1 (PB2) 3812.6 0.000000e+00 2208/2280 (96%) EPI816844 A/turkey/Poland/09/2014 (A/H9N2) segment 1 (PB2) 3808.9 0.000000e+00 2207/2280 (96%) EPI617882 A/mallard/Republic of Georgia/13/2011 (A/H6N2) segment 1 (PB2) 3807.1 0.000000e+00 2207/2280 (96%) EPI1036183 A/duck/Moscow/4652/2011 (A/H4N6) segment 1 (PB2) 3803.4 0.000000e+00 2206/2280 (96%) EPI687184 A/chicken/Scotland/532/2016 (A/H5N1) segment 1 (PB2) 3796.0 0.000000e+00 2198/2270 (96%) EPI1133958 A/duck/Mongolia/27/2011 (A/H3N8) segment 1 (PB2) 3790.4 0.000000e+00 2204/2280 (96%) EPI839725 A/chicken/France/150169a/2015 (A/H5N1) segment 1 (PB2) 3773.8 0.000000e+00 2202/2281 (96%) EPI890883 A/greater white-fronted goose/Netherlands/2/2007 (A/H6N8) segment 1 (PB2) 3768.3 0.000000e+00 2200/2280 (96%) EPI1014358 A/mallard duck/Netherlands/18/2014 (A/H1N1) segment 1 (PB2) 3762.7 0.000000e+00 2199/2280 (96%) EPI174657 A/duck/Hunan/689/2006 (A/H5N1) segment 1 (PB2) 3746.1 0.000000e+00 2196/2280 (96%) EPI221999 A/environment/Hunan/1-8/2007 (A/H5N1) segment 1 (PB2) 3740.6 0.000000e+00 2195/2280 (96%) EPI174670 A/chicken/Hunan/3157/2006 (A/H5N1) segment 1 (PB2) 3735.0 0.000000e+00 2195/2281 (96%) EPI484292 A/chicken/Italy/13VIR4527-11/2013 (A/H7N7) segment 1 (PB2) 3731.4 0.000000e+00 2149/2214 (97%) EPI174669 A/chicken/Hubei/3002/2007 (A/H5N1) segment 1 (PB2) 3729.5 0.000000e+00 2193/2280 (96%) EPI174668 A/duck/Hubei/2911/2007 (A/H5N1) segment 1 (PB2) 3729.5 0.000000e+00 2193/2280 (96%) EPI174667 A/chicken/Hubei/2856/2007 (A/H5N1) segment 1 (PB2) 3729.5 0.000000e+00 2193/2280 (96%) EPI174665 A/duck/Hunan/1964/2007 (A/H5N1) segment 1 (PB2) 3729.5 0.000000e+00 2193/2280 (96%) EPI222147 A/lesser kestrel/Heilongjiang/194/2007 (A/H5N1) segment 1 (PB2) 3724.0 0.000000e+00 2192/2280 (96%) EPI839733 A/duck/France/150233/2015 (A/H5N2) segment 1 (PB2) 3718.4 0.000000e+00 2191/2280 (96%) EPI823778 A/environment/Kamchatka/24/2016 (A/H13N8) segment 1 (PB2) 3718.4 0.000000e+00 2191/2280 (96%) EPI823762 A/environment/Kamchatka/23/2016 (A/H13N8) segment 1 (PB2) 3714.7 0.000000e+00 2190/2280 (96%) EPI839741 A/duck/France/150236/2015 (A/H5N9) segment 1 (PB2) 3712.9 0.000000e+00 2190/2280 (96%) EPI262682 A/aquatic bird/Korea/w120/2006 (A/H5N2) segment 1 (PB2) 3712.9 0.000000e+00 2191/2281 (96%) EPI262680 A/aquatic bird/Korea/w113/2006 (A/H5N2) segment 1 (PB2) 3712.9 0.000000e+00 2191/2281 (96%) EPI173585 A/swine/Korea/C12/2008 (A/H5N2) segment 1 (PB2) 3712.9 0.000000e+00 2191/2281 (96%) EPI1013684 A/mallard duck/Netherlands/40/2011 (A/H7N1) segment 1 (PB2) 3707.3 0.000000e+00 2190/2281 (96%) EPI1013496 A/mallard duck/Netherlands/48/2011 (A/H7N1) segment 1 (PB2) 3707.3 0.000000e+00 2190/2281 (96%) EPI889596 A/mallard duck/Netherlands/8/2012 (A/H1N1) segment 1 (PB2) 3707.3 0.000000e+00 2189/2280 (96%) EPI809271 A/pigeon/Egypt/S10409A/2014 (A/H9N2) segment 1 (PB2) 3707.3 0.000000e+00 2190/2281 (96%) EPI262683 A/aquatic bird/Korea/w121/2006 (A/H5N2) segment 1 (PB2) 3707.3 0.000000e+00 2190/2281 (96%) EPI1011215 A/mallard duck/Netherlands/45/2011 (A/H8N1) segment 1 (PB2) 3701.8 0.000000e+00 2189/2281 (95%) EPI940605 A/guinea fowl/France/150207n/2015 (A/H5N9) segment 1 (PB2) 3701.8 0.000000e+00 2189/2281 (95%) EPI890747 A/mallard duck/Netherlands/44/2011 (A/H7N1) segment 1 (PB2) 3701.8 0.000000e+00 2189/2281 (95%) EPI889269 A/mallard duck/Netherlands/31/2012 (A/H7N1) segment 1 (PB2) 3701.8 0.000000e+00 2189/2281 (95%) EPI889248 A/mallard duck/Netherlands/43/2011 (A/H7N1) segment 1 (PB2) 3701.8 0.000000e+00 2189/2281 (95%) EPI262681 A/aquatic bird/Korea/w114/2006 (A/H5N2) segment 1 (PB2) 3701.8 0.000000e+00 2189/2281 (95%) EPI174662 A/duck/Henan/1652/2006 (A/H5N1) segment 1 (PB2) 3696.3 0.000000e+00 2187/2280 (95%) EPI174660 A/duck/Henan/1647/2006 (A/H5N1) segment 1 (PB2) 3696.3 0.000000e+00 2188/2281 (95%) EPI961485 A/environment/Kamchatka/117/2016 (A/H13N8) segment 1 (PB2) 3690.7 0.000000e+00 2186/2280 (95%) EPI167950 A/long-tailed shrike/Hong Kong/2762/2007 (A/H5N1) segment 1 (PB2) 3687.0 0.000000e+00 2170/2257 (96%) EPI222581 A/scaly-breasted munia/Hong Kong/45/2007 (A/H5N1) segment 1 (PB2) 3685.2 0.000000e+00 2175/2265 (96%) EPI220527 A/environment/Hunan/6-69/2008 (A/H5N1) segment 1 (PB2) 3685.2 0.000000e+00 2185/2280 (95%) EPI809383 A/pigeon/Egypt/S10408B/2014 (A/H9N2) segment 1 (PB2) 3668.6 0.000000e+00 2184/2282 (95%) EPI1087898 A/ Quail /Egypt/1253V/2016 (A/H9N2) segment 1 (PB2) 3635.3 0.000000e+00 2176/2280 (95%) EPI1086370 A/Chicken/Egypt/374V/2016 (A/H9N2) segment 1 (PB2) 3635.3 0.000000e+00 2178/2282 (95%) EPI1006524 A/duck/Guangxi/015D2/2009 (A/H3N2) segment 1 (PB2) 3635.3 0.000000e+00 2176/2280 (95%) EPI167855 A/crested goshawk/Hong Kong/458/2007 (A/H5N1) segment 1 (PB2) 3629.8 0.000000e+00 2139/2226 (96%) EPI316548 A/spot-billed duck/Korea/KNU SYG06/2006 (A/H5N3) segment 1 (PB2) 3579.9 0.000000e+00 2166/2280 (95%) EPI401812 A/green-winged teal/Xianghai/430/2011 (A/H5N2) segment 1 (PB2) 3574.4 0.000000e+00 2165/2280 (94%) EPI534805 A/duck/Zhejiang/D18/2013 (A/H3N3) segment 1 (PB2) 3568.8 0.000000e+00 2164/2280 (94%) EPI534804 A/duck/Zhejiang/D17/2013 (A/H3N3) segment 1 (PB2) 3568.8 0.000000e+00 2164/2280 (94%) EPI534803 A/duck/Zhejiang/D16/2013 (A/H3N3) segment 1 (PB2) 3568.8 0.000000e+00 2164/2280 (94%) EPI534800 A/duck/Zhejiang/D13/2013 (A/H3N2) segment 1 (PB2) 3568.8 0.000000e+00 2164/2280 (94%) EPI534799 A/duck/Zhejiang/D11/2013 (A/H3N2) segment 1 (PB2) 3568.8 0.000000e+00 2164/2280 (94%) EPI469171 A/wild duck/Guangdong/520/2001 (A/H1N9) segment 1 (PB2) 3568.8 0.000000e+00 2164/2280 (94%) EPI99874 A/duck/Denmark/65047/04 (A/H5N2) segment 1 (PB2) 3568.8 0.000000e+00 2164/2280 (94%)
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