niman Posted February 16, 2018 Report Share Posted February 16, 2018 Vector Labs has confirmed that the HPAI H5N2 in Kostromskaya Russia is Clade 2.3.4.4 with H5, MP, and PA matching prior clade 2.3.4.4 isolates. Link to comment Share on other sites More sharing options...
niman Posted February 16, 2018 Author Report Share Posted February 16, 2018 eleased files edit Name Isolate ID Subtype Passage PB2 PB1 PA HA NP NA MP NS HE P3 Collection date edit Name Isolate ID Subtype Passage PB2 PB1 PA HA NP NA MP NS HE P3 Collection date A/chicken/Kostroma/1721/2017 EPI_ISL_297466 H5N2 original 2329 2329 2221 1776 1565 1394 1027 890 --- --- 2017-12-22 A/chicken/Kostroma/1720/2017 EPI_ISL_297465 H5N2 original 2329 2329 2221 1776 1565 1394 1027 890 --- --- 2017-12-22 A/chicken/Kostroma/1719/2017 EPI_ISL_297464 H5N2 original 2329 2329 2221 1776 1565 1394 1027 890 --- --- 2017-12-22 A/chicken/Kostroma/1717/2017 EPI_ISL_297463 H5N2 original 2329 2329 2221 1776 1565 1394 1027 890 --- --- 2017-12-22 Link to comment Share on other sites More sharing options...
niman Posted February 16, 2018 Author Report Share Posted February 16, 2018 Isolate detail Isolate name: A/chicken/Kostroma/1721/2017 Isolate ID: EPI_ISL_297466 Passage details/history: original Type: A / H5N2 Lineage: Sample information Collection date: 2017-12-22 Host Gallus gallus domesticus Additional host information: Domestic status: Domestic Is vaccinated: Location: Russian Federation / Kostroma Oblast Additional location information: Health status: Dead Specimen source: Organ Strain or commercial product name used for vaccination: Institute information Originating lab: Sample ID given by the sample provider: Address: Submitting lab: State Research Center of Virology and Biotechnology (VECTOR) Sample ID given by the submitting laboratory: Authors: Ivan,Susloparov; Natalya,Goncharova; Natalya,Kolosova; Vasiliy,Marchenko; Alexander,Ryzhikov Address: State Research Center of Virology and Biotechnology (VECTOR) Emerging Zoonotic Diseases and Influenza Vector Street Build 12 630559 Koltsovo Russian Federation Publication Publication In vivo antiviral resistance Phenotype Genotype Unspecified Antiviral resistance tested by experimental procedures Adamantanes: Unknown Oseltamivir: Unknown Zanamivir: Unknown Peramivir: Unknown Other: Unknown Additional information Antigenic characterization: Note: Sequence segment identifier length accession # INSDC Sequence PB2 A/chicken/Kostroma/1721/2017 2329 EPI1170213 PB1 A/chicken/Kostroma/1721/2017 2329 EPI1170212 PA A/chicken/Kostroma/1721/2017 2221 EPI1170207 HA A/chicken/Kostroma/1721/2017 1776 EPI1170208 NP A/chicken/Kostroma/1721/2017 1565 EPI1170210 NA A/chicken/Kostroma/1721/2017 1394 EPI1170209 MP A/chicken/Kostroma/1721/2017 1027 EPI1170214 NS A/chicken/Kostroma/1721/2017 890 EPI1170211 Submitter information Submitter: Susloparov, Ivan Submission Date: 2018-02-09 Last modifier: Susloparov, Ivan Last modified: 2018-02-11 Address: State Research Center of Virology and Biotechnology (VECTOR) Emerging Zoonotic Diseases and Influenza Vector Street Build 12 630559 Koltsovo Russian Federation Link to comment Share on other sites More sharing options...
niman Posted February 16, 2018 Author Report Share Posted February 16, 2018 Descriptions Align Segment-ID Name Score E-Value Identity EPI1170208 A/chicken/Kostroma/1721/2017 (A/H5N2) segment 4 (HA) 3147.8 0.000000e+00 1704/1704 (100%) EPI1170199 A/chicken/Kostroma/1720/2017 (A/H5N2) segment 4 (HA) 3147.8 0.000000e+00 1704/1704 (100%) EPI1170191 A/chicken/Kostroma/1719/2017 (A/H5N2) segment 4 (HA) 3147.8 0.000000e+00 1704/1704 (100%) EPI1170180 A/chicken/Kostroma/1717/2017 (A/H5N2) segment 4 (HA) 3147.8 0.000000e+00 1704/1704 (100%) EPI1158108 A/chicken/Kostroma/1718/2017 (A/H5N2) segment 4 (HA) 3147.8 0.000000e+00 1704/1704 (100%) EPI1010500 A/green-winged teal/Egypt/877/2016 (A/H5N8) segment 4 (HA) 3103.5 0.000000e+00 1696/1704 (99%) EPI1010489 A/green-winged teal/Egypt/871/2016 (A/H5N8) segment 4 (HA) 3098.0 0.000000e+00 1695/1704 (99%) EPI926613 A/domestic duck/Siberia/103/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI926605 A/domestic duck/Siberia/50K/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI925956 A/gadwall/Chany/97/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI1006681 A/common teal/Korea/W549/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI1006680 A/common teal/Korea/W547/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI990794 A/greylag goose/Germany-NI/AR1395-L02144/2017 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI969347 A/turkey/Germany-BB/R377ff/2017 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI952639 A/chicken/Korea/H903/2017 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI909452 A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI869936 A/chicken/Kalmykia/2661/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI869931 A/turkey/Poland/83/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI869930 A/turkey/Poland/78/2016 (A/H5N8) segment 4 (HA) 3061.0 0.000000e+00 1688/1704 (99%) EPI1034974 A/grey heron/W779/2017 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI1006705 A/common teal/Korea/W555/2017 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI1006704 A/common teal/Korea/W550/2016 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI1006703 A/common teal/Korea/W548/2016 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI990802 A/greylag goose/Germany-NI/AR703-L02138/2017 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI954567 A/turkey/Italy/17VIR538-1/2017 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI952782 A/mallard duck/Korea/WA137/2017 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI916604 A/bronze turkey/Czech Republic/1414-17/2017 (H5N8) (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI773757 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1689/1705 (99%) EPI907346 A/domestic duck/Germany-BB/R681ff/2017 (A/H5N8) segment 4 (HA) 3055.5 0.000000e+00 1686/1702 (99%) EPI1176527 A/turkey/Israel/1076/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI1021106 A/mute swan/Czech Republic/1296-17_1/2017 (H5N8) (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI931207 A/turkey/Germany-BB/R234ff/2017 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI881901 A/mute swan/Croatia/15/2017 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI858844 A/painted stork/India/10CA03/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI836614 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI836606 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI823756 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI823748 A/wild duck/Tyva/35/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI823460 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI774394 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI774386 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI774310 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI774242 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI774234 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI774121 A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI774113 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI1176530 A/peregrine falcon/Israel/1086/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI1169147 A/chicken/Rostov-on-Don/1321/2017 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI1159809 A/Anser cygnoides/Hubei/FW44/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI954877 A/Mallard/Hungary/1574a/2017 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI954861 A/Mallard/Hungary/1574b/2017 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI954559 A/swan/Italy/17VIR537-2/2017 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI873624 A/mute swan/Croatia/9/2017 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI864746 A/mute swan/Croatia/85/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI861568 A/mute swan/Croatia/70/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI860519 A/goose/Hungary/55128/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI774475 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI774458 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI774450 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI774402 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI774378 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI774326 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI774318 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI774302 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI774277 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI774267 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI774259 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI774251 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI774226 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI774218 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI774210 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI774201 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI774193 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI774185 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI774176 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI774168 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI774159 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI774150 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI978865 A/mute swan/Germany-TH/R1126/2017 (A/H5N8) segment 4 (HA) 3046.2 0.000000e+00 1685/1704 (98%) EPI869924 A/domestic goose/Poland/33/2016 (A/H5N8) segment 4 (HA) 3044.4 0.000000e+00 1685/1704 (98%) EPI1169201 A/chicken/Rostov-on-Don/1598/2017 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI1159825 A/Cygnus atratus/Hubei/HF-1/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI1159817 A/Cygnus atratus/Hubei/2Z2-O/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI1032549 A/Mulard_duck/Hungary/59163/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI1032532 A/Mulard_duck/Hungary/62902/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI1032524 A/Mulard_duck/Hungary/60369/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI1032508 A/Goose/Hungary/17985/2017 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI1032492 A/Goose/Hungary/17051/2017 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI1032484 A/Goose/Hungary/15729/2017 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI1032476 A/Goose/Hungary/17261/2017 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI1021135 A/quail/Czech Republic/2063-17_1/2017 (H5N8) (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI1021132 A/goose/Czech Republic/1954-17/2017 (H5N8) (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI1019638 A/Eur_Wig/NL-Zoeterwoude/16015702-010/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI1019582 A/Eur_Wig/NL-Leidschendam/16015697-007/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI1019550 A/Eur_Wig/NL-Gouda/16015824-001/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI1019518 A/Eur_Wig/NL-De Waal (Texel)/16014891-004/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI1019510 A/Eur_Wig/NL-De Waal (Texel)/16014891-003/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI964917 A/chicken/Czech Republic/206-17_2/2017 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI962046 A/Duck/Hungary/54738/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI961525 A/chicken/Italy/17VIR1751-3/2017 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) Link to comment Share on other sites More sharing options...
niman Posted February 16, 2018 Author Report Share Posted February 16, 2018 Descriptions Align Segment-ID Name Score E-Value Identity EPI1170209 A/chicken/Kostroma/1721/2017 (A/H5N2) segment 6 (NA) 2501.5 0.000000e+00 1354/1354 (100%) EPI1170201 A/chicken/Kostroma/1720/2017 (A/H5N2) segment 6 (NA) 2501.5 0.000000e+00 1354/1354 (100%) EPI1170193 A/chicken/Kostroma/1719/2017 (A/H5N2) segment 6 (NA) 2501.5 0.000000e+00 1354/1354 (100%) EPI1170182 A/chicken/Kostroma/1717/2017 (A/H5N2) segment 6 (NA) 2501.5 0.000000e+00 1354/1354 (100%) EPI1158110 A/chicken/Kostroma/1718/2017 (A/H5N2) segment 6 (NA) 2501.5 0.000000e+00 1354/1354 (100%) EPI890019 A/greater white-fronted goose/Netherlands/3/2011 (A/H6N2) segment 6 (NA) 2100.8 0.000000e+00 1169/1185 (98%) EPI889275 A/gadwall duck/Netherlands/1/2011 (A/H6N2) segment 6 (NA) 2089.7 0.000000e+00 1167/1185 (98%) EPI617878 A/mallard/Republic of Georgia/13/2011 (A/H6N2) segment 6 (NA) 2087.8 0.000000e+00 1166/1184 (98%) EPI895332 A/Anser fabalis/China/Anhui/L180/2014 (A/H6N2) segment 6 (NA) 2062.0 0.000000e+00 1162/1185 (98%) EPI895260 A/Anser fabalis/China/Anhui/S39/2014 (A/H6N2) segment 6 (NA) 2062.0 0.000000e+00 1162/1185 (98%) EPI334401 A/Teal/Norway/10_1037/2010 (A/H3N2) segment 6 (NA) 2062.0 0.000000e+00 1148/1164 (98%) EPI691796 A/duck/Sichuan/183/2013 (A/H9N2) segment 6 (NA) 2060.1 0.000000e+00 1151/1169 (98%) EPI222089 A/garganey/Altai/1213/2007 (A/H5N2) segment 6 (NA) 2060.1 0.000000e+00 1151/1169 (98%) EPI222049 A/gadwall/Altai/1202/2007 (A/H5N2) segment 6 (NA) 2060.1 0.000000e+00 1151/1169 (98%) EPI1010901 A/mallard duck/Netherlands/9/2014 (A/H6N2) segment 6 (NA) 2056.4 0.000000e+00 1161/1185 (97%) EPI895276 A/Anser fabalis/China/Anhui/S65/2014 (A/H6N2) segment 6 (NA) 2056.4 0.000000e+00 1161/1185 (97%) EPI704309 A/duck/Mongolia/154/2015 (A/H0N2) segment 6 (NA) 2056.4 0.000000e+00 1161/1185 (97%) EPI704301 A/duck/Mongolia/141/2015 (A/H0N2) segment 6 (NA) 2056.4 0.000000e+00 1161/1185 (97%) EPI693716 A/duck/Mongolia/66/2015 (A/H10N2) segment 6 (NA) 2056.4 0.000000e+00 1161/1185 (97%) EPI182381 A/mallard/Xuyi/10/2005 (A/H5N2) segment 6 (NA) 2056.4 0.000000e+00 1161/1185 (97%) EPI377586 A/mallard/Sweden/58451/2006 (A/H2N2) segment 6 (NA) 2054.6 0.000000e+00 1161/1185 (97%) EPI377578 A/mallard/Sweden/58112/2006 (A/H2N2) segment 6 (NA) 2049.1 0.000000e+00 1160/1185 (97%) EPI1006614 A/Anseriformes/Anhui/S61/2014 (A/H1N2) segment 6 (NA) 2047.2 0.000000e+00 1154/1177 (98%) EPI891121 A/mallard duck/Netherlands/7/2014 (A/H6N2) segment 6 (NA) 2045.4 0.000000e+00 1159/1185 (97%) EPI718560 A/Anas platyrhynchos/Belgium/24311pcs5/2012 (A/H9N2) segment 6 (NA) 2045.4 0.000000e+00 1159/1185 (97%) EPI182378 A/spotbill duck/Xuyi/18/2005 (A/H5N2) segment 6 (NA) 2045.4 0.000000e+00 1159/1185 (97%) EPI940663 A/duck/India/11CL01/2014 (A/H6N2) segment 6 (NA) 2043.5 0.000000e+00 1150/1172 (98%) EPI1013937 A/mallard duck/Netherlands/11/2014 (A/H6N2) segment 6 (NA) 2039.8 0.000000e+00 1158/1185 (97%) EPI942124 A/duck/Hubei/ZYSYG15/2015 (A/H6N2) segment 6 (NA) 2039.8 0.000000e+00 1158/1185 (97%) EPI942123 A/duck/Hubei/ZYSYG14/2015 (A/H6N2) segment 6 (NA) 2039.8 0.000000e+00 1158/1185 (97%) EPI942122 A/duck/Hubei/ZYSYG1/2015 (A/H6N2) segment 6 (NA) 2039.8 0.000000e+00 1158/1185 (97%) EPI118050 A/duck/Jiang Xi/1286/2005 (A/H5N2) segment 6 (NA) 2039.8 0.000000e+00 1144/1164 (98%) EPI906566 A/Environment/Jiangxi/08488/2015 (A/H12N2) segment 6 (NA) 2038.0 0.000000e+00 1147/1169 (98%) EPI895252 A/Anser fabalis/China/Anhui/S20/2014 (A/H6N2) segment 6 (NA) 2038.0 0.000000e+00 1147/1169 (98%) EPI334396 A/Mallard/Norway/10_1368/2010 (A/H6N2) segment 6 (NA) 2038.0 0.000000e+00 1132/1147 (98%) EPI181963 A/mallard/Netherlands/2/2005 (A/H4N2) segment 6 (NA) 2036.1 0.000000e+00 1154/1180 (97%) EPI890441 A/greater white-fronted goose/Netherlands/6/2010 (A/H6N2) segment 6 (NA) 2034.3 0.000000e+00 1155/1182 (97%) EPI118064 A/duck/Jiang Xi/3345/2005 (A/H5N2) segment 6 (NA) 2034.3 0.000000e+00 1143/1164 (98%) EPI618503 A/mallard/Sweden/4932/2004 (A/H9N2) segment 6 (NA) 2032.4 0.000000e+00 1157/1185 (97%) EPI363577 A/duck/Yunnan/3136/2006 (A/H6N2) segment 6 (NA) 2032.4 0.000000e+00 1146/1169 (98%) EPI619172 A/mallard/Sweden/60041/2007 (A/H8N2) segment 6 (NA) 2030.6 0.000000e+00 1153/1180 (97%) EPI619098 A/mallard/Sweden/68537/2007 (A/H0) segment 6 (NA) 2030.6 0.000000e+00 1153/1180 (97%) EPI890042 A/greater white-fronted goose/Netherlands/5/2008 (A/H5N2) segment 6 (NA) 2026.9 0.000000e+00 1156/1185 (97%) EPI618077 A/mallard/Sweden/60065/2007 (A/H0) segment 6 (NA) 2026.9 0.000000e+00 1157/1186 (97%) EPI514009 A/mallard/Sweden/68551/2007 (A/H4N2) segment 6 (NA) 2026.9 0.000000e+00 1157/1186 (97%) EPI514000 A/mallard/Sweden/68940/2007 (A/H4N2) segment 6 (NA) 2026.9 0.000000e+00 1157/1186 (97%) EPI513964 A/mallard/Sweden/68677/2007 (A/H0) segment 6 (NA) 2026.9 0.000000e+00 1157/1186 (97%) EPI513926 A/mallard/Sweden/69580/2007 (A/H0) segment 6 (NA) 2026.9 0.000000e+00 1157/1186 (97%) EPI377602 A/mallard/Sweden/68597/2007 (A/H2N2) segment 6 (NA) 2026.9 0.000000e+00 1157/1186 (97%) EPI377594 A/mallard/Sweden/68735/2007 (A/H2N2) segment 6 (NA) 2026.9 0.000000e+00 1157/1186 (97%) EPI182379 A/spotbill duck/Xuyi/6/2005 (A/H11N2) segment 6 (NA) 2026.9 0.000000e+00 1145/1169 (97%) EPI417484 A/duck/Guangxi/GXd-2/2010 (A/H6N2) segment 6 (NA) 2025.0 0.000000e+00 1154/1183 (97%) EPI890135 A/greater white-fronted goose/Netherlands/1/2006 (A/H6N2) segment 6 (NA) 2023.2 0.000000e+00 1155/1185 (97%) EPI576632 A/Taiwan/DV413/2006 (A/H5N2) segment 6 (NA) 2023.2 0.000000e+00 1155/1185 (97%) EPI514047 A/mallard/Sweden/68504/2007 (A/H4N2) segment 6 (NA) 2023.2 0.000000e+00 1155/1185 (97%) EPI181648 A/duck/Tsukuba/9/2005 (A/H5N2) segment 6 (NA) 2023.2 0.000000e+00 1143/1167 (97%) EPI890264 A/greater white-fronted goose/Netherlands/6/2008 (A/H5N2) segment 6 (NA) 2021.4 0.000000e+00 1155/1185 (97%) EPI839738 A/duck/France/150233/2015 (A/H5N2) segment 6 (NA) 2021.4 0.000000e+00 1144/1169 (97%) EPI600780 A/migratory duck/Jiangxi/10857/2005 (A/H10N2) segment 6 (NA) 2021.4 0.000000e+00 1144/1169 (97%) EPI586236 A/muskrat/Russia/63/2014 (A/H2N2) segment 6 (NA) 2021.4 0.000000e+00 1155/1185 (97%) EPI1006905 A/chicken/Korea/C54/2009 (A/H9N2) segment 6 (NA) 2019.5 0.000000e+00 1153/1183 (97%) EPI1006512 A/chicken/Guangxi/015C10/2009 (A/H3N2) segment 6 (NA) 2019.5 0.000000e+00 1153/1183 (97%) EPI576639 A/Taiwan/DV518/2006 (A/H5N2) segment 6 (NA) 2017.7 0.000000e+00 1154/1185 (97%) EPI574273 A/mule duck/Bulgaria/175/2009 (A/H0) segment 6 (NA) 2017.7 0.000000e+00 1144/1170 (97%) EPI574265 A/mule duck/Bulgaria/174/2009 (A/H6N2) segment 6 (NA) 2017.7 0.000000e+00 1144/1170 (97%) EPI225321 A/northern pintail/Akita/714/2006 (A/H5N2) segment 6 (NA) 2017.7 0.000000e+00 1154/1185 (97%) EPI618548 A/mallard/Sweden/58705/2006 (A/H5N2) segment 6 (NA) 2015.8 0.000000e+00 1154/1185 (97%) EPI600911 A/migratory duck/Jiangxi/10861/2005 (A/H10N2) segment 6 (NA) 2015.8 0.000000e+00 1143/1169 (97%) EPI514178 A/mallard/Sweden/58463/2006 (A/H0) segment 6 (NA) 2015.8 0.000000e+00 1154/1185 (97%) EPI268167 A/duck/Guangxi/141/2005 (A/H6N2) segment 6 (NA) 2015.8 0.000000e+00 1143/1169 (97%) EPI1098967 A/duck/Bangladesh/31019/2016 (A/H3N2) segment 6 (NA) 2012.1 0.000000e+00 1153/1185 (97%) EPI574226 A/mule duck/Bulgaria/173/2009 (A/H6N2) segment 6 (NA) 2012.1 0.000000e+00 1143/1170 (97%) EPI463328 A/mallard/Sweden/99853/2009 (A/H11N2) segment 6 (NA) 2012.1 0.000000e+00 1154/1186 (97%) EPI438283 A/duck/Vietnam/LBM300/2012 (A/H10N2) segment 6 (NA) 2012.1 0.000000e+00 1153/1185 (97%) EPI284652 A/duck/Hunan/8-19/2009 (A/H4N2) segment 6 (NA) 2012.1 0.000000e+00 1153/1185 (97%) EPI889991 A/mallard duck/Netherlands/3/2008 (A/H6N2) segment 6 (NA) 2010.3 0.000000e+00 1153/1185 (97%) EPI514228 A/mallard/Sweden/52593/2006 (A/H0) segment 6 (NA) 2010.3 0.000000e+00 1153/1185 (97%) EPI514154 A/mallard/Sweden/58359/2006 (A/H0) segment 6 (NA) 2010.3 0.000000e+00 1153/1185 (97%) EPI377625 A/mallard/Netherlands/14/2007 (A/H2N2) segment 6 (NA) 2010.3 0.000000e+00 1153/1185 (97%) EPI363521 A/duck/Guizhou/1084/2006 (A/H6N2) segment 6 (NA) 2010.3 0.000000e+00 1142/1169 (97%) EPI268188 A/mallard/Jiangxi/8264/2004 (A/H6N2) segment 6 (NA) 2010.3 0.000000e+00 1142/1169 (97%) EPI262551 A/aquatic bird/Korea/w96/2005 (A/H5N2) segment 6 (NA) 2010.3 0.000000e+00 1143/1170 (97%) EPI181947 A/mallard/Netherlands/14/2007 (A/H2N2) segment 6 (NA) 2010.3 0.000000e+00 1153/1185 (97%) EPI1006881 A/chicken/Korea/C41/2009 (A/H9N2) segment 6 (NA) 2008.4 0.000000e+00 1150/1183 (97%) EPI816849 A/turkey/Poland/09/2014 (A/H9N2) segment 6 (NA) 2008.4 0.000000e+00 1266/1355 (93%) EPI585518 A/turkey/England/13538/2013 (A/H9N2) segment 6 (NA) 2008.4 0.000000e+00 1267/1355 (93%) EPI585515 A/turkey/England/13437/2013 (A/H9N2) segment 6 (NA) 2008.4 0.000000e+00 1267/1355 (93%) EPI463340 A/mallard/Sweden/99889/2009 (A/H11N2) segment 6 (NA) 2008.4 0.000000e+00 1150/1181 (97%) EPI463327 A/mallard/Sweden/99852/2009 (A/H11N2) segment 6 (NA) 2008.4 0.000000e+00 1150/1181 (97%) EPI463323 A/mallard/Sweden/99846/2009 (A/H11N2) segment 6 (NA) 2008.4 0.000000e+00 1150/1181 (97%) EPI463312 A/mallard/Sweden/99820/2009 (A/H11N2) segment 6 (NA) 2008.4 0.000000e+00 1150/1181 (97%) EPI457889 A/chicken/Guangxi/GXc-1/2011 (A/H1N2) segment 6 (NA) 2008.4 0.000000e+00 1151/1183 (97%) EPI397607 A/wild goose/Germany-BB/R2329/2008 (A/H6N2) segment 6 (NA) 2008.4 0.000000e+00 1149/1180 (97%) EPI1006897 A/chicken/Korea/C51/2009 (A/H9N2) segment 6 (NA) 2006.6 0.000000e+00 1150/1182 (97%) EPI463349 A/mallard/Sweden/99985/2009 (A/H6N2) segment 6 (NA) 2006.6 0.000000e+00 1153/1186 (97%) EPI463348 A/mallard/Sweden/99983/2009 (A/H6N2) segment 6 (NA) 2006.6 0.000000e+00 1153/1186 (97%) EPI463347 A/mallard/Sweden/99966/2009 (A/H6N2) segment 6 (NA) 2006.6 0.000000e+00 1153/1186 (97%) EPI463346 A/mallard/Sweden/99961/2009 (A/H6N2) segment 6 (NA) 2006.6 0.000000e+00 1153/1186 (97%) EPI463345 A/mallard/Sweden/99957/2009 (A/H6N2) segment 6 (NA) 2006.6 0.000000e+00 1153/1186 (97%) EPI463344 A/mallard/Sweden/99939/2009 (A/H11N2) segment 6 (NA) 2006.6 0.000000e+00 1153/1186 (97%) Link to comment Share on other sites More sharing options...
niman Posted February 16, 2018 Author Report Share Posted February 16, 2018 Descriptions Align Segment-ID Name Score E-Value Identity EPI1170214 A/chicken/Kostroma/1721/2017 (A/H5N2) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%) EPI1170200 A/chicken/Kostroma/1720/2017 (A/H5N2) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%) EPI1170192 A/chicken/Kostroma/1719/2017 (A/H5N2) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%) EPI1170181 A/chicken/Kostroma/1717/2017 (A/H5N2) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%) EPI1158111 A/chicken/Kostroma/1718/2017 (A/H5N2) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%) EPI1010490 A/green-winged teal/Egypt/871/2016 (A/H5N8) segment 7 (MP) 1797.9 0.000000e+00 979/982 (99%) EPI1006710 A/common teal/Korea/W555/2017 (A/H5N8) segment 7 (MP) 1797.9 0.000000e+00 979/982 (99%) EPI1006709 A/common teal/Korea/W550/2016 (A/H5N8) segment 7 (MP) 1797.9 0.000000e+00 979/982 (99%) EPI1006708 A/common teal/Korea/W549/2016 (A/H5N8) segment 7 (MP) 1797.9 0.000000e+00 979/982 (99%) EPI1006707 A/common teal/Korea/W548/2016 (A/H5N8) segment 7 (MP) 1797.9 0.000000e+00 979/982 (99%) EPI1006706 A/common teal/Korea/W547/2016 (A/H5N8) segment 7 (MP) 1797.9 0.000000e+00 979/982 (99%) EPI952800 A/mallard duck/Korea/WA137/2017 (A/H5N8) segment 7 (MP) 1797.9 0.000000e+00 979/982 (99%) EPI926616 A/domestic duck/Siberia/103/2016 (A/H5N8) segment 7 (MP) 1797.9 0.000000e+00 979/982 (99%) EPI926608 A/domestic duck/Siberia/50K/2016 (A/H5N8) segment 7 (MP) 1797.9 0.000000e+00 979/982 (99%) EPI925951 A/gadwall/Chany/97/2016 (A/H5N8) segment 7 (MP) 1797.9 0.000000e+00 979/982 (99%) EPI1010493 A/green-winged teal/Egypt/877/2016 (A/H5N8) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI954562 A/turkey/Italy/17VIR538-1/2017 (A/H5N8) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI952642 A/chicken/Korea/H903/2017 (A/H5N8) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI858847 A/painted stork/India/10CA03/2016 (A/H5N8) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI1034977 A/grey heron/W779/2017 (A/H5N8) segment 7 (MP) 1786.8 0.000000e+00 977/982 (99%) EPI1159812 A/Anser cygnoides/Hubei/FW44/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI962069 A/Mute_swan/Hungary/5879/2017 (A/H5N5) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI954804 A/wigeon/Italy/16VIR9616-3/2016 (A/H5N5) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI954618 A/gadwall/Italy/17VIR133-2/2017 (A/H5N5) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI858840 A/duck/India/10CA01/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI931201 A/mute swan/Czech Republic/2031-17/2017 (H5N5) (A/H5N5) segment 7 (MP) 1762.8 0.000000e+00 972/981 (99%) EPI1117264 A/M_Swan/NL-Groningen/16015826-001/2016 (A/H5N5) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI961482 A/environment/Kamchatka/18/2016 (A/H5N5) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI899695 A/turkey/Germany-SH/R425/2017 (A/H5N5) segment 7 (MP) 1759.1 0.000000e+00 970/979 (99%) EPI990773 A/greylag goose/Germany-NIAR11353-L02142/2016 (A/H5N5) segment 7 (MP) 1757.3 0.000000e+00 971/981 (98%) EPI916522 A/mute swan/Croatia/42/2017 (A/H5N5) segment 7 (MP) 1757.3 0.000000e+00 969/978 (99%) EPI873622 A/mute swan/Croatia/102/2016 (A/H5N5) segment 7 (MP) 1757.3 0.000000e+00 969/978 (99%) EPI895487 A/barnacle goose/Germany-SH/R11505/2016 (A/H5N5) segment 7 (MP) 1755.4 0.000000e+00 969/979 (98%) EPI1002886 A/black swan/Germany-BW/R1364/2017 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI954840 A/Mallard/Hungary/5821/2017 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI986365 A/chicken/Croatia/104/2017 (A/H5N5) segment 7 (MP) 1751.7 0.000000e+00 968/978 (98%) EPI995483 A/cormorant/Germany-SH/R896/2017 (A/H5N5) segment 7 (MP) 1749.9 0.000000e+00 968/979 (98%) EPI1159828 A/Cygnus atratus/Hubei/HF-1/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 971/983 (98%) EPI1032553 A/Mulard_duck/Hungary/59163/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI1032527 A/Mulard_duck/Hungary/62902/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI1032519 A/Mulard_duck/Hungary/60369/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI1032511 A/Goose/Hungary/59763/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI1032503 A/Goose/Hungary/17985/2017 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI1032495 A/Goose/Hungary/17580/2017 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI1032487 A/Goose/Hungary/17051/2017 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI1032479 A/Goose/Hungary/15729/2017 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI1019529 A/Eur_Wig/NL-Enumatil-Groningen/16015704-001/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI962050 A/Duck/Hungary/55764/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI962039 A/Duck/Hungary/54738/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI961503 A/turkey/Italy/17VIR1574-1/2017 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI961452 A/gadwall/Kurgan/2442/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI959534 A/Mute swan/Hungary/6276/2017 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI959427 A/chicken/Poland/79A/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI956123 A/Goose/Hungary/59712/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI954832 A/Mute swan/Hungary/3137/2017 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI954730 A/Mute swan/Hungary/3513/2017 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI954722 A/Mute swan/Hungary/3139/2017 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI954714 A/Mute swan/Hungary/2825/2017 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI954682 A/Mute swan/Hungary/1955/2017 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI954650 A/Duck/Hungary/984/2017 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI954634 A/Harris Hawk/Hungary/120/2017 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI954594 A/turkey/Italy/17VIR1338-3/2017 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI953518 A/mallard/Hungary/57857/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI909463 A/chicken/Kalmykia/2643/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI909455 A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI866980 A/duck/Hungary/60441/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI860521 A/goose/Hungary/55128/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI860516 A/Mulard_duck/Hungary/54494/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI859202 A/mute_swan/Hungary/51049/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI826909 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI823751 A/wild duck/Tyva/35/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI823463 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI774437 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI774364 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI774297 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI774221 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI773760 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI1085345 A/goose/Czech Republic/136-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1746.2 0.000000e+00 969/981 (98%) EPI969267 A/chicken/Czech Republic/2644-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1746.2 0.000000e+00 969/981 (98%) EPI931199 A/chicken/Czech Republic/1896-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1746.2 0.000000e+00 969/981 (98%) EPI931112 A/mute swan/Czech Republic/879-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1746.2 0.000000e+00 969/981 (98%) EPI930844 A/chicken/Czech Republic/55-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1746.2 0.000000e+00 969/981 (98%) EPI930839 A/mute swan/Czech Republic/54-17_2/2017 (H5N8) (A/H5N8) segment 7 (MP) 1746.2 0.000000e+00 969/981 (98%) EPI1126346 A/mallard/Czech Republic/136-17_2/2017 (H5N8) (A/H5N8) segment 7 (MP) 1742.5 0.000000e+00 968/981 (98%) EPI1117256 A/T_Dk/NL-Werkendam/16014159-001/2016 (A/H5N5) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI1087641 A/chicken/Czech Republic/988-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1742.5 0.000000e+00 968/981 (98%) EPI1032471 A/Goose/Hungary/17261/2017 (A/H5N8) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI1019841 A/T_Dk/NL-Zeewolde/16013976-005/2016 (A/H5N8) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI1019833 A/T_Dk/NL-Zeewolde/16013976-004-006/2016 (A/H5N8) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI1019801 A/T_Dk/NL-Werkendam/16014159-003/2016 (A/H5N8) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI1019793 A/T_Dk/NL-Werkendam/16014159-002/2016 (A/H5N8) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI1019785 A/T_Dk/NL-Rotterdam/16014155-001/2016 (A/H5N8) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI1019777 A/T_Dk/NL-Roggebotsluis/16014462-015/2016 (A/H5N8) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI1019745 A/P_falcon/NL-Vrouwenpolder (Zeeland)/16015510-001/2016 (A/H5N8) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI1019729 A/Mal/NL-IJsselmuiden/16015448-002/2016 (A/H5N8) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI1019721 A/Magpie/NL-Volendam/16014331-002/2016 (A/H5N8) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI1019705 A/L-bl-ba-gull/NL-Sovon/16014324-014/2016 (A/H5N8) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI1019673 A/Grey_Go/NL-Groot-Ammers/16015901-012/2016 (A/H5N8) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI1019657 A/Go/NL-Roggebotsluis/16014462-010/2016 (A/H5N8) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI1019641 A/Eur_Wig/NL-Zwolle/16015820-002/2016 (A/H5N8) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) Link to comment Share on other sites More sharing options...
niman Posted February 16, 2018 Author Report Share Posted February 16, 2018 (edited) Descriptions Align Segment-ID Name Score E-Value Identity EPI1170213 A/chicken/Kostroma/1721/2017 (A/H5N2) segment 1 (PB2) 4211.5 0.000000e+00 2280/2280 (100%) EPI1170206 A/chicken/Kostroma/1720/2017 (A/H5N2) segment 1 (PB2) 4211.5 0.000000e+00 2280/2280 (100%) EPI1170197 A/chicken/Kostroma/1719/2017 (A/H5N2) segment 1 (PB2) 4211.5 0.000000e+00 2280/2280 (100%) EPI1170187 A/chicken/Kostroma/1717/2017 (A/H5N2) segment 1 (PB2) 4211.5 0.000000e+00 2280/2280 (100%) EPI1158105 A/chicken/Kostroma/1718/2017 (A/H5N2) segment 1 (PB2) 4205.9 0.000000e+00 2279/2280 (99%) EPI617974 A/common Teal/Republic of Georgia/1/2011 (A/H3N8) segment 1 (PB2) 4056.4 0.000000e+00 2252/2280 (98%) EPI617882 A/mallard/Republic of Georgia/13/2011 (A/H6N2) segment 1 (PB2) 4023.1 0.000000e+00 2246/2280 (98%) EPI1036183 A/duck/Moscow/4652/2011 (A/H4N6) segment 1 (PB2) 3991.7 0.000000e+00 2240/2280 (98%) EPI823778 A/environment/Kamchatka/24/2016 (A/H13N8) segment 1 (PB2) 3989.9 0.000000e+00 2240/2280 (98%) EPI823762 A/environment/Kamchatka/23/2016 (A/H13N8) segment 1 (PB2) 3980.7 0.000000e+00 2238/2280 (98%) EPI341793 A/mallard/France/090360/2009 (A/H9N2) segment 1 (PB2) 3962.2 0.000000e+00 2235/2280 (98%) EPI961485 A/environment/Kamchatka/117/2016 (A/H13N8) segment 1 (PB2) 3956.6 0.000000e+00 2234/2280 (97%) EPI890883 A/greater white-fronted goose/Netherlands/2/2007 (A/H6N8) segment 1 (PB2) 3940.0 0.000000e+00 2231/2280 (97%) EPI1014087 A/mallard duck/Georgia/11/2011 (A/H1N1) segment 1 (PB2) 3934.5 0.000000e+00 2230/2280 (97%) EPI889820 A/mallard duck/Netherlands/15/2011 (A/H6N8) segment 1 (PB2) 3934.5 0.000000e+00 2230/2280 (97%) EPI889410 A/Eurasian teal/Netherlands/1/2011 (A/H3N8) segment 1 (PB2) 3934.5 0.000000e+00 2230/2280 (97%) EPI889594 A/mallard duck/Netherlands/20/2011 (A/H6N8) segment 1 (PB2) 3923.4 0.000000e+00 2228/2280 (97%) EPI1133605 A/shelduck/Yasnopolyanske/4-08-02/2011 (A/H1N1) segment 1 (PB2) 3912.3 0.000000e+00 2226/2280 (97%) EPI809271 A/pigeon/Egypt/S10409A/2014 (A/H9N2) segment 1 (PB2) 3912.3 0.000000e+00 2227/2281 (97%) EPI618045 A/mallard/Republic of Georgia/12/2011 (A/H10N4) segment 1 (PB2) 3912.3 0.000000e+00 2226/2280 (97%) EPI1010712 A/white-fronted goose/Netherlands/5/2011 (A/H6N8) segment 1 (PB2) 3901.2 0.000000e+00 2224/2280 (97%) EPI890266 A/greater white-fronted goose/Netherlands/6/2011 (A/H6N8) segment 1 (PB2) 3901.2 0.000000e+00 2224/2280 (97%) EPI1013538 A/mallard duck/Netherlands/18/2012 (A/H4N2) segment 1 (PB2) 3890.2 0.000000e+00 2223/2281 (97%) EPI1011210 A/mallard duck/Netherlands/16/2012 (A/H3N2) segment 1 (PB2) 3890.2 0.000000e+00 2222/2280 (97%) EPI174667 A/chicken/Hubei/2856/2007 (A/H5N1) segment 1 (PB2) 3890.2 0.000000e+00 2222/2280 (97%) EPI174665 A/duck/Hunan/1964/2007 (A/H5N1) segment 1 (PB2) 3890.2 0.000000e+00 2223/2281 (97%) EPI174670 A/chicken/Hunan/3157/2006 (A/H5N1) segment 1 (PB2) 3884.6 0.000000e+00 2221/2280 (97%) EPI174657 A/duck/Hunan/689/2006 (A/H5N1) segment 1 (PB2) 3884.6 0.000000e+00 2221/2280 (97%) EPI891105 A/mallard duck/Netherlands/23/2012 (A/H11N9) segment 1 (PB2) 3879.1 0.000000e+00 2220/2280 (97%) EPI677988 A/chicken/Italy/13VIR4527-12/2013 (A/H7N7) segment 1 (PB2) 3879.1 0.000000e+00 2220/2280 (97%) EPI560338 A/Italy/3/2013 (A/H7N7) segment 1 (PB2) 3879.1 0.000000e+00 2220/2280 (97%) EPI221999 A/environment/Hunan/1-8/2007 (A/H5N1) segment 1 (PB2) 3879.1 0.000000e+00 2220/2280 (97%) EPI174669 A/chicken/Hubei/3002/2007 (A/H5N1) segment 1 (PB2) 3879.1 0.000000e+00 2220/2280 (97%) EPI174668 A/duck/Hubei/2911/2007 (A/H5N1) segment 1 (PB2) 3879.1 0.000000e+00 2220/2280 (97%) EPI678028 A/chicken/Italy/13VIR4541-7/2013 (A/H7N7) segment 1 (PB2) 3875.4 0.000000e+00 2219/2280 (97%) EPI678004 A/chicken/Italy/13VIR4541-32/2013 (A/H7N7) segment 1 (PB2) 3875.4 0.000000e+00 2219/2280 (97%) EPI677996 A/chicken/Italy/13VIR4527-11/2013 (A/H7N7) segment 1 (PB2) 3875.4 0.000000e+00 2219/2280 (97%) EPI889776 A/mallard duck/Netherlands/32/2011 (A/H5N2) segment 1 (PB2) 3873.5 0.000000e+00 2219/2280 (97%) EPI816828 A/turkey/Poland/14/2013 (A/H9N2) segment 1 (PB2) 3873.5 0.000000e+00 2220/2281 (97%) EPI809383 A/pigeon/Egypt/S10408B/2014 (A/H9N2) segment 1 (PB2) 3873.5 0.000000e+00 2220/2281 (97%) EPI678076 A/chicken/Italy/13VIR5051-3/2013 (A/H7N7) segment 1 (PB2) 3873.5 0.000000e+00 2219/2280 (97%) EPI678060 A/chicken/Italy/13VIR4774/2013 (A/H7N7) segment 1 (PB2) 3873.5 0.000000e+00 2219/2280 (97%) EPI678052 A/chicken/Italy/13VIR4603-1/2013 (A/H7N7) segment 1 (PB2) 3873.5 0.000000e+00 2219/2280 (97%) EPI678036 A/chicken/Italy/13VIR4541-8/2013 (A/H7N7) segment 1 (PB2) 3873.5 0.000000e+00 2219/2280 (97%) EPI222147 A/lesser kestrel/Heilongjiang/194/2007 (A/H5N1) segment 1 (PB2) 3873.5 0.000000e+00 2219/2280 (97%) EPI678012 A/chicken/Italy/13VIR4541-33/2013 (A/H7N7) segment 1 (PB2) 3871.7 0.000000e+00 2218/2280 (97%) EPI678092 A/turkey/Italy/13VIR4678-1/2013 (A/H7N7) segment 1 (PB2) 3869.9 0.000000e+00 2218/2280 (97%) EPI678068 A/chicken/Italy/13VIR5051-1/2013 (A/H7N7) segment 1 (PB2) 3869.9 0.000000e+00 2218/2280 (97%) EPI678084 A/chicken/Italy/13VIR5091/2013 (A/H7N7) segment 1 (PB2) 3868.0 0.000000e+00 2218/2280 (97%) EPI678044 A/chicken/Italy/13VIR4541-9/2013 (A/H7N7) segment 1 (PB2) 3868.0 0.000000e+00 2218/2280 (97%) EPI678020 A/chicken/Italy/13VIR4541-34/2013 (A/H7N7) segment 1 (PB2) 3868.0 0.000000e+00 2218/2280 (97%) EPI1013811 A/mallard duck/Netherlands/10/2013 (A/H4N6) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%) EPI262682 A/aquatic bird/Korea/w120/2006 (A/H5N2) segment 1 (PB2) 3862.5 0.000000e+00 2217/2280 (97%) EPI262680 A/aquatic bird/Korea/w113/2006 (A/H5N2) segment 1 (PB2) 3862.5 0.000000e+00 2217/2280 (97%) EPI173585 A/swine/Korea/C12/2008 (A/H5N2) segment 1 (PB2) 3862.5 0.000000e+00 2217/2280 (97%) EPI773762 A/chicken/Netherlands/16007311-037041/2016 (A/H7N9) segment 1 (PB2) 3856.9 0.000000e+00 2216/2280 (97%) EPI174662 A/duck/Henan/1652/2006 (A/H5N1) segment 1 (PB2) 3856.9 0.000000e+00 2216/2280 (97%) EPI174660 A/duck/Henan/1647/2006 (A/H5N1) segment 1 (PB2) 3856.9 0.000000e+00 2217/2281 (97%) EPI262681 A/aquatic bird/Korea/w114/2006 (A/H5N2) segment 1 (PB2) 3851.4 0.000000e+00 2215/2280 (97%) EPI816836 A/turkey/Poland/08/2014 (A/H9N2) segment 1 (PB2) 3845.8 0.000000e+00 2214/2280 (97%) EPI774511 A/chicken/Netherlands/15007212/15 (A/H10N7) segment 1 (PB2) 3845.8 0.000000e+00 2214/2280 (97%) EPI262683 A/aquatic bird/Korea/w121/2006 (A/H5N2) segment 1 (PB2) 3845.8 0.000000e+00 2214/2280 (97%) EPI816844 A/turkey/Poland/09/2014 (A/H9N2) segment 1 (PB2) 3842.2 0.000000e+00 2213/2280 (97%) EPI1133958 A/duck/Mongolia/27/2011 (A/H3N8) segment 1 (PB2) 3840.3 0.000000e+00 2213/2280 (97%) EPI167950 A/long-tailed shrike/Hong Kong/2762/2007 (A/H5N1) segment 1 (PB2) 3836.6 0.000000e+00 2197/2257 (97%) EPI718523 A/Anas platyrhynchos/Belgium/17330cls42/2013 (A/H5N2) segment 1 (PB2) 3834.8 0.000000e+00 2213/2281 (97%) EPI222581 A/scaly-breasted munia/Hong Kong/45/2007 (A/H5N1) segment 1 (PB2) 3834.8 0.000000e+00 2202/2265 (97%) EPI1086370 A/Chicken/Egypt/374V/2016 (A/H9N2) segment 1 (PB2) 3823.7 0.000000e+00 2211/2281 (96%) EPI1013684 A/mallard duck/Netherlands/40/2011 (A/H7N1) segment 1 (PB2) 3823.7 0.000000e+00 2211/2281 (96%) EPI1013496 A/mallard duck/Netherlands/48/2011 (A/H7N1) segment 1 (PB2) 3823.7 0.000000e+00 2211/2281 (96%) EPI889596 A/mallard duck/Netherlands/8/2012 (A/H1N1) segment 1 (PB2) 3823.7 0.000000e+00 2210/2280 (96%) EPI220527 A/environment/Hunan/6-69/2008 (A/H5N1) segment 1 (PB2) 3823.7 0.000000e+00 2211/2281 (96%) EPI1011215 A/mallard duck/Netherlands/45/2011 (A/H8N1) segment 1 (PB2) 3818.1 0.000000e+00 2210/2281 (96%) EPI890747 A/mallard duck/Netherlands/44/2011 (A/H7N1) segment 1 (PB2) 3818.1 0.000000e+00 2210/2281 (96%) EPI890191 A/mallard duck/Netherlands/30/2014 (A/H4N6) segment 1 (PB2) 3818.1 0.000000e+00 2209/2280 (96%) EPI889269 A/mallard duck/Netherlands/31/2012 (A/H7N1) segment 1 (PB2) 3818.1 0.000000e+00 2210/2281 (96%) EPI889248 A/mallard duck/Netherlands/43/2011 (A/H7N1) segment 1 (PB2) 3818.1 0.000000e+00 2210/2281 (96%) EPI687184 A/chicken/Scotland/532/2016 (A/H5N1) segment 1 (PB2) 3807.1 0.000000e+00 2200/2270 (96%) EPI1087898 A/ Quail /Egypt/1253V/2016 (A/H9N2) segment 1 (PB2) 3801.5 0.000000e+00 2206/2280 (96%) EPI839725 A/chicken/France/150169a/2015 (A/H5N1) segment 1 (PB2) 3796.0 0.000000e+00 2205/2280 (96%) EPI1168802 A/chicken/Egypt/ABD5/2015 (A/H9N2) segment 1 (PB2) 3784.9 0.000000e+00 2204/2281 (96%) EPI1168801 A/chicken/Egypt/ABD4/2015 (A/H9N2) segment 1 (PB2) 3784.9 0.000000e+00 2204/2281 (96%) EPI1168800 A/chicken/Egypt/ABD3/2015 (A/H9N2) segment 1 (PB2) 3784.9 0.000000e+00 2204/2281 (96%) EPI839733 A/duck/France/150233/2015 (A/H5N2) segment 1 (PB2) 3784.9 0.000000e+00 2203/2280 (96%) EPI1168798 A/chicken/Egypt/ABD1/2015 (A/H9N2) segment 1 (PB2) 3779.4 0.000000e+00 2203/2281 (96%) EPI167855 A/crested goshawk/Hong Kong/458/2007 (A/H5N1) segment 1 (PB2) 3779.4 0.000000e+00 2166/2226 (97%) EPI1014358 A/mallard duck/Netherlands/18/2014 (A/H1N1) segment 1 (PB2) 3768.3 0.000000e+00 2201/2281 (96%) EPI1006524 A/duck/Guangxi/015D2/2009 (A/H3N2) segment 1 (PB2) 3762.7 0.000000e+00 2199/2280 (96%) EPI1168799 A/chicken/Egypt/ABD2/2015 (A/H9N2) segment 1 (PB2) 3757.2 0.000000e+00 2200/2282 (96%) EPI619190 A/mallard/Sweden/2990/2003 (A/H8N4) segment 1 (PB2) 3757.2 0.000000e+00 2198/2280 (96%) EPI619284 A/mallard/Sweden/2834/2003 (A/H8N4) segment 1 (PB2) 3751.7 0.000000e+00 2197/2280 (96%) EPI401812 A/green-winged teal/Xianghai/430/2011 (A/H5N2) segment 1 (PB2) 3751.7 0.000000e+00 2197/2280 (96%) EPI251798 A/mallard/Sweden/8/2003 (A/H8N4) segment 1 (PB2) 3751.7 0.000000e+00 2197/2280 (96%) EPI484292 A/chicken/Italy/13VIR4527-11/2013 (A/H7N7) segment 1 (PB2) 3748.0 0.000000e+00 2152/2214 (97%) EPI839741 A/duck/France/150236/2015 (A/H5N9) segment 1 (PB2) 3746.1 0.000000e+00 2197/2281 (96%) EPI316548 A/spot-billed duck/Korea/KNU SYG06/2006 (A/H5N3) segment 1 (PB2) 3746.1 0.000000e+00 2196/2280 (96%) EPI514918 A/mallard/Sweden/274/2002 (A/H4N2) segment 1 (PB2) 3740.6 0.000000e+00 2195/2280 (96%) EPI99874 A/duck/Denmark/65047/04 (A/H5N2) segment 1 (PB2) 3740.6 0.000000e+00 2195/2280 (96%) EPI940605 A/guinea fowl/France/150207n/2015 (A/H5N9) segment 1 (PB2) 3735.0 0.000000e+00 2196/2282 (96%) EPI534805 A/duck/Zhejiang/D18/2013 (A/H3N3) segment 1 (PB2) 3735.0 0.000000e+00 2194/2280 (96% Edited February 16, 2018 by niman Link to comment Share on other sites More sharing options...
niman Posted February 16, 2018 Author Report Share Posted February 16, 2018 Descriptions Align Segment-ID Name Score E-Value Identity EPI1170212 A/chicken/Kostroma/1721/2017 (A/H5N2) segment 2 (PB1) 4200.4 0.000000e+00 2274/2274 (100%) EPI1170205 A/chicken/Kostroma/1720/2017 (A/H5N2) segment 2 (PB1) 4200.4 0.000000e+00 2274/2274 (100%) EPI1170196 A/chicken/Kostroma/1719/2017 (A/H5N2) segment 2 (PB1) 4200.4 0.000000e+00 2274/2274 (100%) EPI1170186 A/chicken/Kostroma/1717/2017 (A/H5N2) segment 2 (PB1) 4200.4 0.000000e+00 2274/2274 (100%) EPI1158106 A/chicken/Kostroma/1718/2017 (A/H5N2) segment 2 (PB1) 4200.4 0.000000e+00 2274/2274 (100%) EPI884245 A/shoveler/Chany/82K/2014 (A/H3N8) segment 2 (PB1) 4073.0 0.000000e+00 2251/2274 (98%) EPI940659 A/duck/India/11CL01/2014 (A/H6N2) segment 2 (PB1) 4045.3 0.000000e+00 2246/2274 (98%) EPI1057754 A/duck/Kagoshima/KU57/2014 (A/H11N9) segment 2 (PB1) 4034.2 0.000000e+00 2244/2274 (98%) EPI1057746 A/crane/Kagoshima/KU-T40/2015 (A/H11N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI837770 A/mallard/Poland/141/2015 (A/H5N1) segment 2 (PB1) 4023.1 0.000000e+00 2230/2257 (98%) EPI704370 A/duck/Mongolia/211/2015 (A/H3N8) segment 2 (PB1) 4023.1 0.000000e+00 2242/2274 (98%) EPI704362 A/duck/Mongolia/208/2015 (A/H3N8) segment 2 (PB1) 4023.1 0.000000e+00 2242/2274 (98%) EPI704313 A/duck/Mongolia/167/2015 (A/H3N8) segment 2 (PB1) 4023.1 0.000000e+00 2242/2274 (98%) EPI693704 A/duck/Mongolia/83/2015 (A/H3N8) segment 2 (PB1) 4023.1 0.000000e+00 2242/2274 (98%) EPI693696 A/duck/Mongolia/20/2015 (A/H3N8) segment 2 (PB1) 4023.1 0.000000e+00 2242/2274 (98%) EPI990792 A/greylag goose/Germany-NI/AR1395-L02144/2017 (A/H5N8) segment 2 (PB1) 4017.6 0.000000e+00 2242/2275 (98%) EPI964915 A/chicken/Czech Republic/206-17_2/2017 (A/H5N8) segment 2 (PB1) 4012.0 0.000000e+00 2241/2275 (98%) EPI954537 A/Goose/Hungary/65817/2016 (A/H5N8) segment 2 (PB1) 4012.0 0.000000e+00 2241/2275 (98%) EPI887466 A/chicken/Czech Republic/206-17_2/2017(H5N8) (A/H5N8) segment 2 (PB1) 4012.0 0.000000e+00 2241/2275 (98%) EPI959417 A/domestic goose/Poland/33/2016 (A/H5N8) segment 2 (PB1) 4006.5 0.000000e+00 2240/2275 (98%) EPI922439 A/domestic duck/Germany-BB/R681ff/2017 (A/H5N8) segment 2 (PB1) 4006.5 0.000000e+00 2238/2272 (98%) EPI540405 A/waterfowl/Bangladesh/12301/2013 (A/H6N7) segment 2 (PB1) 4002.8 0.000000e+00 2238/2274 (98%) EPI1133591 A/mallard/Nizhnegorsk/3-06-10/2010 (A/H7N7) segment 2 (PB1) 4001.0 0.000000e+00 2238/2274 (98%) EPI1013376 A/white-fronted goose/Netherlands/3/2010 (A/H5N2) segment 2 (PB1) 4001.0 0.000000e+00 2239/2275 (98%) EPI990800 A/greylag goose/Germany-NI/AR703-L02138/2017 (A/H5N8) segment 2 (PB1) 4001.0 0.000000e+00 2239/2275 (98%) EPI974522 A/mute swan/Germany-TH/R1126/2017 (A/H5N8) segment 2 (PB1) 4001.0 0.000000e+00 2239/2275 (98%) EPI891301 A/greater white-fronted goose/Netherlands/2/2010 (A/H5N2) segment 2 (PB1) 4001.0 0.000000e+00 2239/2275 (98%) EPI874778 A/turkey/Germany-NI/R10523/2016 (A/H5N8) segment 2 (PB1) 4001.0 0.000000e+00 2239/2275 (98%) EPI464920 A/guinea fowl/Italy/10VIR-218-134/2010 (A/H5N2) segment 2 (PB1) 4001.0 0.000000e+00 2235/2269 (98%) EPI973788 A/grey heron/Germany-TH/R1125/2017 (A/H5N8) segment 2 (PB1) 3995.4 0.000000e+00 2238/2275 (98%) EPI959529 A/Mute swan/Hungary/6092/2017 (A/H5N8) segment 2 (PB1) 3995.4 0.000000e+00 2238/2275 (98%) EPI1169138 A/chicken/Rostov-on-Don/1321/2017 (A/H5N8) segment 2 (PB1) 3989.9 0.000000e+00 2237/2275 (98%) EPI965389 A/duck/Bangladesh/24692/2015 (A/H7N1) segment 2 (PB1) 3986.2 0.000000e+00 2235/2274 (98%) EPI837536 A/graylag goose/Poland/74/2010 (A/H5N2) segment 2 (PB1) 3986.2 0.000000e+00 2236/2275 (98%) EPI963326 A/duck/Bangladesh/24035/2014 (A/H10N1) segment 2 (PB1) 3984.3 0.000000e+00 2235/2274 (98%) EPI514974 A/mallard/Sweden/80261/2008 (A/H4N9) segment 2 (PB1) 3984.3 0.000000e+00 2235/2274 (98%) EPI560057 A/mallard/Novomychalivka/2-23-12/2010 (A/H15N7) segment 2 (PB1) 3980.7 0.000000e+00 2233/2272 (98%) EPI965525 A/duck/Bangladesh/26980/2015 (A/H7N9) segment 2 (PB1) 3978.8 0.000000e+00 2234/2274 (98%) EPI965357 A/duck/Bangladesh/27042/2015 (A/H7N9) segment 2 (PB1) 3978.8 0.000000e+00 2234/2274 (98%) EPI965337 A/duck/Bangladesh/26992/2015 (A/H7N9) segment 2 (PB1) 3978.8 0.000000e+00 2234/2274 (98%) EPI965174 A/duck/Bangladesh/24706/2015 (A/H7N1) segment 2 (PB1) 3978.8 0.000000e+00 2234/2274 (98%) EPI1168867 A/mallard/Askania-Nova/39-15-02/2011 (A/H7N7) segment 2 (PB1) 3973.3 0.000000e+00 2233/2274 (98%) EPI1133597 A/mallard/Novomyhalivka/10-23-12/2010 (A/H7N7) segment 2 (PB1) 3973.3 0.000000e+00 2233/2274 (98%) EPI617954 A/Mediterranean gull/Republic of Georgia/1/2011 (A/H9N3) segment 2 (PB1) 3956.6 0.000000e+00 2230/2274 (98%) EPI1133604 A/shelduck/Yasnopolyanske/4-08-02/2011 (A/H1N1) segment 2 (PB1) 3951.1 0.000000e+00 2229/2274 (98%) EPI1013392 A/tufted duck/Georgia/1/2012 (A/H2N3) segment 2 (PB1) 3945.6 0.000000e+00 2228/2274 (97%) EPI891424 A/mallard duck/Netherlands/26/2010 (A/H4N6) segment 2 (PB1) 3945.6 0.000000e+00 2228/2274 (97%) EPI618043 A/mallard/Republic of Georgia/12/2011 (A/H10N4) segment 2 (PB1) 3945.6 0.000000e+00 2228/2274 (97%) EPI617820 A/tufted duck/Republic of Georgia/1/2012 (A/H2N3) segment 2 (PB1) 3945.6 0.000000e+00 2228/2274 (97%) EPI1013908 A/mallard duck/Georgia/3/2012 (A/H7N3) segment 2 (PB1) 3934.5 0.000000e+00 2226/2274 (97%) EPI617793 A/yellow-legged gull/Republic of Georgia/1/2012 (A/H0) segment 2 (PB1) 3934.5 0.000000e+00 2226/2274 (97%) EPI372361 A/shoveler/Egypt/14879-NAMRU3/2006 (A/H7N1) segment 2 (PB1) 3934.5 0.000000e+00 2226/2274 (97%) EPI965363 A/duck/Bangladesh/25767/2015 (A/H6N1) segment 2 (PB1) 3923.4 0.000000e+00 2224/2274 (97%) EPI891371 A/mallard duck/Netherlands/6/2013 (A/H3N8) segment 2 (PB1) 3923.4 0.000000e+00 2224/2274 (97%) EPI618617 A/mallard/Sweden/133546/2011 (A/H10N4) segment 2 (PB1) 3923.4 0.000000e+00 2224/2274 (97%) EPI891426 A/mallard duck/Netherlands/26/2011 (A/H11N9) segment 2 (PB1) 3917.9 0.000000e+00 2224/2275 (97%) EPI617988 A/mallard/Republic of Georgia/3/2011 (A/H3N8) segment 2 (PB1) 3916.0 0.000000e+00 2222/2273 (97%) EPI617899 A/mallard/Republic of Georgia/1/2012 (A/H1N1) segment 2 (PB1) 3912.3 0.000000e+00 2222/2274 (97%) EPI965329 A/duck/Bangladesh/26920/2015 (A/H3N6) segment 2 (PB1) 3906.8 0.000000e+00 2221/2274 (97%) EPI464928 A/chicken/Italy/11VIR-7548/2011 (A/H5N2) segment 2 (PB1) 3906.8 0.000000e+00 2222/2275 (97%) EPI965346 A/duck/Bangladesh/25891/2015 (A/H4N6) segment 2 (PB1) 3901.2 0.000000e+00 2220/2274 (97%) EPI617760 A/mallard/Republic of Georgia/14/2011 (A/H10N7) segment 2 (PB1) 3901.2 0.000000e+00 2220/2274 (97%) EPI182047 A/common eider/Netherlands/1/2006 (A/H3N8) segment 2 (PB1) 3901.2 0.000000e+00 2220/2274 (97%) EPI965342 A/duck/Bangladesh/26974/2015 (A/H3N6) segment 2 (PB1) 3895.7 0.000000e+00 2219/2274 (97%) EPI965318 A/duck/Bangladesh/26948/2015 (A/H3N6) segment 2 (PB1) 3895.7 0.000000e+00 2219/2274 (97%) EPI1010545 A/mallard duck/Sweden/139937/2012 (A/H15N5) segment 2 (PB1) 3890.2 0.000000e+00 2219/2275 (97%) EPI891438 A/mallard duck/Netherlands/3/2015 (A/H7N7) segment 2 (PB1) 3890.2 0.000000e+00 2218/2274 (97%) EPI891297 A/mallard duck/Netherlands/2/2015 (A/H7N7) segment 2 (PB1) 3890.2 0.000000e+00 2218/2274 (97%) EPI1014581 A/mallard duck/Sweden/139647/2012 (A/H15N5) segment 2 (PB1) 3884.6 0.000000e+00 2218/2275 (97%) EPI1014518 A/mallard duck/Sweden/139703/2012 (A/H15N5) segment 2 (PB1) 3884.6 0.000000e+00 2218/2275 (97%) EPI1013669 A/mallard duck/Sweden/139752/2012 (A/H15N5) segment 2 (PB1) 3884.6 0.000000e+00 2218/2275 (97%) EPI1013590 A/mallard duck/Sweden/139899/2012 (A/H15N5) segment 2 (PB1) 3884.6 0.000000e+00 2218/2275 (97%) EPI1013575 A/mallard duck/Sweden/139579/2012 (A/H15N5) segment 2 (PB1) 3884.6 0.000000e+00 2218/2275 (97%) EPI1013817 A/mallard duck/Netherlands/21/2014 (A/H4N6) segment 2 (PB1) 3879.1 0.000000e+00 2216/2274 (97%) EPI623944 A/chicken/England/26352/2015 (A/H7N7) segment 2 (PB1) 3879.1 0.000000e+00 2216/2274 (97%) EPI1011090 A/mallard duck/Netherlands/10/2013 (A/H4N6) segment 2 (PB1) 3873.5 0.000000e+00 2215/2274 (97%) EPI1010959 A/mallard duck/Netherlands/24/2014 (A/H7N3) segment 2 (PB1) 3868.0 0.000000e+00 2214/2274 (97%) EPI891412 A/mallard duck/Netherlands/30/2010 (A/H3N8) segment 2 (PB1) 3868.0 0.000000e+00 2214/2274 (97%) EPI629347 A/chicken/NL-Barneveld/15004745-006-010/2015 (A/H7N7) segment 2 (PB1) 3868.0 0.000000e+00 2214/2274 (97%) EPI629339 A/Chicken/NL-Barneveld/15004745-001-005/2015 (A/H7N7) segment 2 (PB1) 3868.0 0.000000e+00 2214/2274 (97%) EPI874784 A/swan/Germany-SN/R10645/2016 (A/H5N5) segment 2 (PB1) 3864.3 0.000000e+00 2213/2274 (97%) EPI1117259 A/M_Swan/NL-Groningen/16015826-001/2016 (A/H5N5) segment 2 (PB1) 3856.9 0.000000e+00 2212/2274 (97%) EPI1014240 A/mallard duck/Netherlands/8/2014 (A/H7N5) segment 2 (PB1) 3856.9 0.000000e+00 2212/2274 (97%) EPI994065 A/grey heron/Germany-SN/R572/2017 (A/H5N5) segment 2 (PB1) 3856.9 0.000000e+00 2212/2274 (97%) EPI990776 A/greylag goose/Germany-NIAR11353-L02142/2016 (A/H5N5) segment 2 (PB1) 3856.9 0.000000e+00 2212/2274 (97%) EPI961474 A/environment/Kamchatka/18/2016 (A/H5N5) segment 2 (PB1) 3856.9 0.000000e+00 2212/2274 (97%) EPI954801 A/wigeon/Italy/16VIR9616-3/2016 (A/H5N5) segment 2 (PB1) 3856.9 0.000000e+00 2212/2274 (97%) EPI954621 A/gadwall/Italy/17VIR133-2/2017 (A/H5N5) segment 2 (PB1) 3856.9 0.000000e+00 2212/2274 (97%) EPI464944 A/chicken/Italy/12VIR-7785-67/2012 (A/H5N2) segment 2 (PB1) 3856.9 0.000000e+00 2213/2275 (97%) EPI464936 A/turkey/Italy/12VIR-6607-5/2012 (A/H5N2) segment 2 (PB1) 3856.9 0.000000e+00 2213/2275 (97%) EPI837762 A/mallard/Poland/10/2014 (A/H5N3) segment 2 (PB1) 3853.2 0.000000e+00 2199/2255 (97%) EPI962072 A/Mute_swan/Hungary/5879/2017 (A/H5N5) segment 2 (PB1) 3851.4 0.000000e+00 2211/2274 (97%) EPI873617 A/mute swan/Croatia/102/2016 (A/H5N5) segment 2 (PB1) 3851.4 0.000000e+00 2209/2271 (97%) EPI839726 A/chicken/France/150169a/2015 (A/H5N1) segment 2 (PB1) 3851.4 0.000000e+00 2211/2274 (97%) EPI464952 A/turkey/Italy/12VIR-8036-2/2012 (A/H5N2) segment 2 (PB1) 3851.4 0.000000e+00 2212/2275 (97%) EPI916519 A/mute swan/Croatia/42/2017 (A/H5N5) segment 2 (PB1) 3849.5 0.000000e+00 2210/2273 (97%) EPI942215 A/duck/Hubei/ZYSYG3/2015 (A/H6N2) segment 2 (PB1) 3845.8 0.000000e+00 2212/2276 (97%) EPI891408 A/mallard duck/Netherlands/67/2008 (A/H10N7) segment 2 (PB1) 3845.8 0.000000e+00 2210/2274 (97%) EPI959441 A/mute swan/Poland/64/2017 (A/H5N5) segment 2 (PB1) 3842.2 0.000000e+00 2209/2274 (97%) EPI986360 A/chicken/Croatia/104/2017 (A/H5N5) segment 2 (PB1) 3840.3 0.000000e+00 2207/2271 (97%) Link to comment Share on other sites More sharing options...
niman Posted February 16, 2018 Author Report Share Posted February 16, 2018 Descriptions Align Segment-ID Name Score E-Value Identity EPI1170207 A/chicken/Kostroma/1721/2017 (A/H5N2) segment 3 (PA) 3973.3 0.000000e+00 2151/2151 (100%) EPI1170198 A/chicken/Kostroma/1720/2017 (A/H5N2) segment 3 (PA) 3973.3 0.000000e+00 2151/2151 (100%) EPI1170190 A/chicken/Kostroma/1719/2017 (A/H5N2) segment 3 (PA) 3973.3 0.000000e+00 2151/2151 (100%) EPI1170179 A/chicken/Kostroma/1717/2017 (A/H5N2) segment 3 (PA) 3973.3 0.000000e+00 2151/2151 (100%) EPI1158107 A/chicken/Kostroma/1718/2017 (A/H5N2) segment 3 (PA) 3973.3 0.000000e+00 2151/2151 (100%) EPI1010494 A/green-winged teal/Egypt/871/2016 (A/H5N8) segment 3 (PA) 3934.5 0.000000e+00 2144/2151 (99%) EPI1010488 A/green-winged teal/Egypt/877/2016 (A/H5N8) segment 3 (PA) 3934.5 0.000000e+00 2144/2151 (99%) EPI1006724 A/common teal/Korea/W550/2016 (A/H5N8) segment 3 (PA) 3934.5 0.000000e+00 2144/2151 (99%) EPI1006723 A/common teal/Korea/W549/2016 (A/H5N8) segment 3 (PA) 3934.5 0.000000e+00 2144/2151 (99%) EPI1006722 A/common teal/Korea/W548/2016 (A/H5N8) segment 3 (PA) 3934.5 0.000000e+00 2144/2151 (99%) EPI858843 A/painted stork/India/10CA03/2016 (A/H5N8) segment 3 (PA) 3934.5 0.000000e+00 2144/2151 (99%) EPI1006721 A/common teal/Korea/W547/2016 (A/H5N8) segment 3 (PA) 3928.9 0.000000e+00 2143/2151 (99%) EPI952638 A/chicken/Korea/H903/2017 (A/H5N8) segment 3 (PA) 3928.9 0.000000e+00 2143/2151 (99%) EPI1006725 A/common teal/Korea/W555/2017 (A/H5N8) segment 3 (PA) 3923.4 0.000000e+00 2142/2151 (99%) EPI926612 A/domestic duck/Siberia/103/2016 (A/H5N8) segment 3 (PA) 3917.9 0.000000e+00 2141/2151 (99%) EPI925952 A/gadwall/Chany/97/2016 (A/H5N8) segment 3 (PA) 3917.9 0.000000e+00 2141/2151 (99%) EPI952769 A/mallard duck/Korea/WA137/2017 (A/H5N8) segment 3 (PA) 3912.3 0.000000e+00 2140/2151 (99%) EPI926604 A/domestic duck/Siberia/50K/2016 (A/H5N8) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%) EPI1159808 A/Anser cygnoides/Hubei/FW44/2016 (A/H5N8) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%) EPI1034973 A/grey heron/W779/2017 (A/H5N8) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%) EPI954563 A/turkey/Italy/17VIR538-1/2017 (A/H5N8) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%) EPI377637 A/northern shoveler/Georgia/1/2010 (A/H2N3) segment 3 (PA) 3735.0 0.000000e+00 2108/2151 (98%) EPI614284 A/mallard/Republic of Georgia/1/2010 (A/H10N7) segment 3 (PA) 3712.9 0.000000e+00 2104/2151 (97%) EPI363454 A/duck/Guangxi/1074/2006 (A/H6N2) segment 3 (PA) 3712.9 0.000000e+00 2104/2151 (97%) EPI118295 A/duck/Jiang Xi/2374/2005 (A/H3N6) segment 3 (PA) 3712.9 0.000000e+00 2104/2151 (97%) EPI1153560 A/duck/Mongolia/17/2011 (A/H4N3) segment 3 (PA) 3707.3 0.000000e+00 2103/2151 (97%) EPI1036186 A/duck/Moscow/4652/2011 (A/H4N6) segment 3 (PA) 3701.8 0.000000e+00 2102/2151 (97%) EPI363462 A/duck/Guangxi/1157/2006 (A/H6N2) segment 3 (PA) 3701.8 0.000000e+00 2102/2151 (97%) EPI296255 A/wild duck/Korea/SH60/2004 (A/H1N1) segment 3 (PA) 3701.8 0.000000e+00 2102/2151 (97%) EPI962865 A/aquatic bird/Korea/CN2/2009 (A/H5N2) segment 3 (PA) 3696.3 0.000000e+00 2101/2151 (97%) EPI692567 A/duck/Sichuan/S4202/2011 (A/H4N2) segment 3 (PA) 3696.3 0.000000e+00 2101/2151 (97%) EPI296257 A/wild duck/Korea/CSM38/2004 (A/H1N1) segment 3 (PA) 3696.3 0.000000e+00 2101/2151 (97%) EPI262643 A/aquatic bird/Korea/w79/2005 (A/H5N2) segment 3 (PA) 3696.3 0.000000e+00 2101/2151 (97%) EPI118321 A/duck/Jiang Xi/1850/2005 (A/H5N2) segment 3 (PA) 3696.3 0.000000e+00 2101/2151 (97%) EPI118289 A/duck/Jiang Xi/1286/2005 (A/H5N2) segment 3 (PA) 3696.3 0.000000e+00 2101/2151 (97%) EPI1133603 A/shelduck/Yasnopolyanske/4-08-02/2011 (A/H1N1) segment 3 (PA) 3690.7 0.000000e+00 2100/2151 (97%) EPI614286 A/mallard/Republic of Georgia/3/2010 (A/H7N3) segment 3 (PA) 3690.7 0.000000e+00 2100/2151 (97%) EPI493025 A/wild waterfowl/Dongting/C2383/2012 (A/H1N2) segment 3 (PA) 3690.7 0.000000e+00 2100/2151 (97%) EPI363470 A/duck/Guangxi/1248/2006 (A/H6N2) segment 3 (PA) 3690.7 0.000000e+00 2100/2151 (97%) EPI268977 A/mallard/Jiangxi/4408/2005 (A/H6N8) segment 3 (PA) 3690.7 0.000000e+00 2100/2151 (97%) EPI262644 A/aquatic bird/Korea/w81/2005 (A/H5N2) segment 3 (PA) 3690.7 0.000000e+00 2100/2151 (97%) EPI262642 A/aquatic bird/Korea/w74/2005 (A/H5N2) segment 3 (PA) 3690.7 0.000000e+00 2100/2151 (97%) EPI140261 A/migratory duck/Jiang Xi/6568/2004 (A/H4N6) segment 3 (PA) 3690.7 0.000000e+00 2100/2151 (97%) EPI1011028 A/mallard duck/Georgia/3/2012 (A/H7N3) segment 3 (PA) 3685.2 0.000000e+00 2099/2151 (97%) EPI1010637 A/Bewick swan/Netherlands/1/2014 (A/H12N1) segment 3 (PA) 3685.2 0.000000e+00 2099/2151 (97%) EPI773764 A/chicken/Netherlands/16007311-037041/2016 (A/H7N9) segment 3 (PA) 3685.2 0.000000e+00 2099/2151 (97%) EPI717886 A/environment/Hubei-Jinzhou/02/2010 (A/H6N2) segment 3 (PA) 3685.2 0.000000e+00 2099/2151 (97%) EPI614298 A/common coot/Republic of Georgia/1/2010 (A/H6N2) segment 3 (PA) 3685.2 0.000000e+00 2100/2152 (97%) EPI614278 A/mallard/Republic of Georgia/2/2012 (A/H2N3) segment 3 (PA) 3685.2 0.000000e+00 2099/2151 (97%) EPI360053 A/duck/Suphanburi/AI157/2005 (A/H6N1) segment 3 (PA) 3685.2 0.000000e+00 2099/2151 (97%) EPI268817 A/duck/Hunan/177/2005 (A/H6N1) segment 3 (PA) 3685.2 0.000000e+00 2099/2151 (97%) EPI262641 A/aquatic bird/Korea/w54/2005 (A/H5N2) segment 3 (PA) 3685.2 0.000000e+00 2099/2151 (97%) EPI118337 A/duck/Jiang Xi/3345/2005 (A/H5N2) segment 3 (PA) 3685.2 0.000000e+00 2099/2151 (97%) EPI1176421 A/duck/Mongolia/675/2010 (A/H1N1) segment 3 (PA) 3679.6 0.000000e+00 2098/2151 (97%) EPI1168866 A/mallard/Askania-Nova/39-15-02/2011 (A/H7N7) segment 3 (PA) 3679.6 0.000000e+00 2098/2151 (97%) EPI1133589 A/mallard/Nizhnegorsk/3-06-10/2010 (A/H7N7) segment 3 (PA) 3679.6 0.000000e+00 2098/2151 (97%) EPI387412 A/ruddy shelduck/Mongolia/1-26/2007 (A/H3N8) segment 3 (PA) 3679.6 0.000000e+00 2098/2151 (97%) EPI363534 A/duck/Guizhou/2773/2006 (A/H6N2) segment 3 (PA) 3679.6 0.000000e+00 2098/2151 (97%) EPI326817 A/environment/Korea/CSM05/2004 (A/H3N1) segment 3 (PA) 3679.6 0.000000e+00 2098/2151 (97%) EPI316751 A/mallard/Czech Republic/13438-29K/2010 (A/H11N9) segment 3 (PA) 3679.6 0.000000e+00 2098/2151 (97%) EPI296253 A/wild duck/Korea/CW09/2005 (A/H1N1) segment 3 (PA) 3679.6 0.000000e+00 2098/2151 (97%) EPI268979 A/duck/Hunan/3748/2004 (A/H6N8) segment 3 (PA) 3679.6 0.000000e+00 2098/2151 (97%) EPI268960 A/mallard/Jiangxi/8346/2004 (A/H6N5) segment 3 (PA) 3679.6 0.000000e+00 2098/2151 (97%) EPI1175851 A/duck/Mongolia/50/2010 (A/H10N8) segment 3 (PA) 3674.1 0.000000e+00 2097/2151 (97%) EPI1175823 A/duck/Mongolia/46/2010 (A/H10N8) segment 3 (PA) 3674.1 0.000000e+00 2097/2151 (97%) EPI1010821 A/mallard duck/Netherlands/2/2013 (A/H3N6) segment 3 (PA) 3674.1 0.000000e+00 2097/2151 (97%) EPI890596 A/greater white-fronted goose/Netherlands/1/2012 (A/H1N1) segment 3 (PA) 3674.1 0.000000e+00 2097/2151 (97%) EPI837836 A/environment/Korea/W267/2007 (A/H7N4) segment 3 (PA) 3674.1 0.000000e+00 2097/2151 (97%) EPI599172 A/migratory duck/Jiangxi/21248/2009 (A/H10N8) segment 3 (PA) 3674.1 0.000000e+00 2097/2151 (97%) EPI387502 A/canvasback/Mongolia/2-69/2007 (A/H10) segment 3 (PA) 3674.1 0.000000e+00 2095/2148 (97%) EPI345928 A/whistling swan/Shimane/580/2002 (A/H5N3) segment 3 (PA) 3674.1 0.000000e+00 2098/2152 (97%) EPI307313 A/aquatic bird/Korea/MA81/2007 (A/H5N2) segment 3 (PA) 3674.1 0.000000e+00 2097/2151 (97%) EPI307311 A/mallard duck/Korea/6L/2007 (A/H7N6) segment 3 (PA) 3674.1 0.000000e+00 2097/2151 (97%) EPI262663 A/aquatic bird/Korea/w222/2007 (A/H5N2) segment 3 (PA) 3674.1 0.000000e+00 2097/2151 (97%) EPI258967 A/aquatic bird/Korea/w164/2007 (A/H5N2) segment 3 (PA) 3674.1 0.000000e+00 2097/2151 (97%) EPI258966 A/aquatic bird/Korea/w163/2007 (A/H5N2) segment 3 (PA) 3674.1 0.000000e+00 2097/2151 (97%) EPI131894 A/sharp-tailed sandpiper/Australia/10/2004 (A/H11N9) segment 3 (PA) 3674.1 0.000000e+00 2097/2151 (97%) EPI69246 A/sharp-tailed sandpiper/Australia/6/2004 (A/H11N9) segment 3 (PA) 3674.1 0.000000e+00 2097/2151 (97%) EPI1175916 A/duck/Mongolia/637/2010 (A/H4N6) segment 3 (PA) 3668.6 0.000000e+00 2096/2151 (97%) EPI1133976 A/duck/Mongolia/244/2010 (A/H4N6) segment 3 (PA) 3668.6 0.000000e+00 2096/2151 (97%) EPI1014324 A/mallard duck/Netherlands/2/2014 (A/H10N7) segment 3 (PA) 3668.6 0.000000e+00 2096/2151 (97%) EPI891127 A/mallard duck/Netherlands/13/2013 (A/H7N7) segment 3 (PA) 3668.6 0.000000e+00 2096/2151 (97%) EPI889396 A/mallard duck/Netherlands/1/2014 (A/H10N7) segment 3 (PA) 3668.6 0.000000e+00 2096/2151 (97%) EPI774513 A/chicken/Netherlands/15007212/15 (A/H10N7) segment 3 (PA) 3668.6 0.000000e+00 2096/2151 (97%) EPI749127 A/environment/Chongqing/02412/2012 (A/H5N1) segment 3 (PA) 3668.6 0.000000e+00 2096/2151 (97%) EPI687186 A/chicken/Scotland/532/2016 (A/H5N1) segment 3 (PA) 3668.6 0.000000e+00 2096/2151 (97%) EPI540395 A/duck/Bangladesh/1293/2008 (A/H6N1) segment 3 (PA) 3668.6 0.000000e+00 2096/2151 (97%) EPI335409 A/aquatic bird/Korea/CN17/2009 (A/H6N2) segment 3 (PA) 3668.6 0.000000e+00 2096/2151 (97%) EPI268962 A/duck/Guangxi/1455/2004 (A/H6N5) segment 3 (PA) 3668.6 0.000000e+00 2096/2151 (97%) EPI540323 A/duck/Bangladesh/1575/2009 (A/H3N8) segment 3 (PA) 3663.0 0.000000e+00 2095/2151 (97%) EPI540315 A/duck/Bangladesh/1576/2009 (A/H3N8) segment 3 (PA) 3663.0 0.000000e+00 2095/2151 (97%) EPI540307 A/duck/Bangladesh/1574/2009 (A/H3N8) segment 3 (PA) 3663.0 0.000000e+00 2095/2151 (97%) EPI538470 A/common shelduck/Mongolia/2187/2011 (A/H5N3) segment 3 (PA) 3663.0 0.000000e+00 2095/2151 (97%) EPI538433 A/wild bird/Mongolia/2066/2011 (A/H5N3) segment 3 (PA) 3663.0 0.000000e+00 2095/2151 (97%) EPI363890 A/duck/Guangxi/1330/2007 (A/H6N8) segment 3 (PA) 3663.0 0.000000e+00 2095/2151 (97%) EPI363882 A/duck/Guangxi/890/2007 (A/H6N8) segment 3 (PA) 3663.0 0.000000e+00 2095/2151 (97%) EPI307308 A/aquatic bird/Korea/w44/2005 (A/H7N3) segment 3 (PA) 3663.0 0.000000e+00 2095/2151 (97%) EPI268961 A/mallard/Jiangxi/8341/2004 (A/H6N5) segment 3 (PA) 3663.0 0.000000e+00 2095/2151 (97%) EPI262667 A/aquatic bird/Korea/w234/2007 (A/H5N2) segment 3 (PA) 3663.0 0.000000e+00 2095/2151 (97%) EPI262666 A/aquatic bird/Korea/w231/2007 (A/H5N2) segment 3 (PA) 3663.0 0.000000e+00 2095/2151 (97%) Link to comment Share on other sites More sharing options...
niman Posted February 16, 2018 Author Report Share Posted February 16, 2018 Descriptions Align Segment-ID Name Score E-Value Identity EPI1170210 A/chicken/Kostroma/1721/2017 (A/H5N2) segment 5 (NP) 2765.6 0.000000e+00 1497/1497 (100%) EPI1170203 A/chicken/Kostroma/1720/2017 (A/H5N2) segment 5 (NP) 2765.6 0.000000e+00 1497/1497 (100%) EPI1170194 A/chicken/Kostroma/1719/2017 (A/H5N2) segment 5 (NP) 2765.6 0.000000e+00 1497/1497 (100%) EPI1158109 A/chicken/Kostroma/1718/2017 (A/H5N2) segment 5 (NP) 2765.6 0.000000e+00 1497/1497 (100%) EPI1170183 A/chicken/Kostroma/1717/2017 (A/H5N2) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%) EPI909468 A/chicken/Astrakhan/3131/2016 (A/H5N8) segment 5 (NP) 2665.8 0.000000e+00 1479/1497 (98%) EPI617869 A/mallard/Republic of Georgia/4/2012 (A/H1N1) segment 5 (NP) 2604.9 0.000000e+00 1468/1497 (98%) EPI889966 A/mallard duck/Netherlands/7/2014 (A/H6N2) segment 5 (NP) 2582.7 0.000000e+00 1464/1497 (97%) EPI704357 A/duck/Mongolia/200/2015 (A/H3N8) segment 5 (NP) 2571.7 0.000000e+00 1462/1497 (97%) EPI1013473 A/mallard duck/Netherlands/11/2014 (A/H6N2) segment 5 (NP) 2566.1 0.000000e+00 1461/1497 (97%) EPI493029 A/wild waterfowl/Dongting/C2383/2012 (A/H1N2) segment 5 (NP) 2560.6 0.000000e+00 1460/1497 (97%) EPI438282 A/duck/Vietnam/LBM300/2012 (A/H10N2) segment 5 (NP) 2560.6 0.000000e+00 1460/1497 (97%) EPI965388 A/duck/Bangladesh/25767/2015 (A/H6N1) segment 5 (NP) 2555.0 0.000000e+00 1459/1497 (97%) EPI618038 A/domestic duck/Republic of Georgia/2/2010 (A/H10N7) segment 5 (NP) 2555.0 0.000000e+00 1460/1498 (97%) EPI618025 A/domestic duck/Republic of Georgia/1/2010 (A/H10N7) segment 5 (NP) 2555.0 0.000000e+00 1460/1498 (97%) EPI446508 A/wild goose/Dongting/C1037/2011 (A/H12N8) segment 5 (NP) 2551.3 0.000000e+00 1458/1497 (97%) EPI683033 A/wild bird/Wuhan/WHHN58/2014 (A/H1N1) segment 5 (NP) 2549.5 0.000000e+00 1458/1497 (97%) EPI683032 A/wild bird/Wuhan/WHHN16/2014 (A/H1N1) segment 5 (NP) 2549.5 0.000000e+00 1458/1497 (97%) EPI1011333 A/mallard duck/Georgia/3/2012 (A/H7N3) segment 5 (NP) 2544.0 0.000000e+00 1457/1497 (97%) EPI1006621 A/Anseriformes/Anhui/S107/2014 (A/H1N1) segment 5 (NP) 2544.0 0.000000e+00 1457/1497 (97%) EPI969336 A/wild bird/Korea/SK14/2014 (A/H1N1) segment 5 (NP) 2544.0 0.000000e+00 1457/1497 (97%) EPI961479 A/environment/Kamchatka/18/2016 (A/H5N5) segment 5 (NP) 2544.0 0.000000e+00 1457/1497 (97%) EPI601644 A/duck/Jiangxi/5581/2013 (A/H0) segment 5 (NP) 2544.0 0.000000e+00 1457/1497 (97%) EPI601635 A/duck/Jiangxi/5576/2013 (A/H0) segment 5 (NP) 2544.0 0.000000e+00 1457/1497 (97%) EPI470398 A/wild waterfowl/Hong Kong/MPP1311/2013 (A/H2N9) segment 5 (NP) 2544.0 0.000000e+00 1457/1497 (97%) EPI703486 A/duck/Anhui/FA258/2013 (A/H1N3) segment 5 (NP) 2542.1 0.000000e+00 1456/1496 (97%) EPI1153578 A/duck/Mongolia/17/2011 (A/H4N3) segment 5 (NP) 2538.4 0.000000e+00 1456/1497 (97%) EPI1055385 A/duck/Wuxi/JYJN203/2014 (A/H11N2) segment 5 (NP) 2538.4 0.000000e+00 1456/1497 (97%) EPI1055377 A/chicken/Wuxi/JYJN132/2014 (A/H11N2) segment 5 (NP) 2538.4 0.000000e+00 1456/1497 (97%) EPI1055369 A/duck/Wuxi/JYJN126/2014 (A/H11N2) segment 5 (NP) 2538.4 0.000000e+00 1456/1497 (97%) EPI942171 A/duck/Ganzhou/GZ5/2015 (A/H4N6) segment 5 (NP) 2538.4 0.000000e+00 1456/1497 (97%) EPI704373 A/duck/Mongolia/211/2015 (A/H3N8) segment 5 (NP) 2538.4 0.000000e+00 1456/1497 (97%) EPI704365 A/duck/Mongolia/208/2015 (A/H3N8) segment 5 (NP) 2538.4 0.000000e+00 1456/1497 (97%) EPI704316 A/duck/Mongolia/167/2015 (A/H3N8) segment 5 (NP) 2538.4 0.000000e+00 1456/1497 (97%) EPI693707 A/duck/Mongolia/83/2015 (A/H3N8) segment 5 (NP) 2538.4 0.000000e+00 1456/1497 (97%) EPI693699 A/duck/Mongolia/20/2015 (A/H3N8) segment 5 (NP) 2538.4 0.000000e+00 1456/1497 (97%) EPI687188 A/chicken/Scotland/532/2016 (A/H5N1) segment 5 (NP) 2538.4 0.000000e+00 1458/1499 (97%) EPI601705 A/duck/Jiangxi/285/2013 (A/H0) segment 5 (NP) 2538.4 0.000000e+00 1456/1497 (97%) EPI591918 A/wild bird/Jiangxi/34503/2013 (A/H7N7) segment 5 (NP) 2538.4 0.000000e+00 1456/1497 (97%) EPI461630 A/duck/Hunan/S1256/2012 (A/H3N8) segment 5 (NP) 2538.4 0.000000e+00 1456/1497 (97%) EPI985015 A/mallard/Netherlands/15/2015 (A/H7N7) segment 5 (NP) 2536.6 0.000000e+00 1439/1472 (97%) EPI1175904 A/duck/Mongolia/62/2013 (A/H3N1) segment 5 (NP) 2532.9 0.000000e+00 1455/1497 (97%) EPI1175832 A/duck/Mongolia/487/2011 (A/H3N8) segment 5 (NP) 2532.9 0.000000e+00 1455/1497 (97%) EPI1153533 A/duck/Mongolia/103/2011 (A/H3N8) segment 5 (NP) 2532.9 0.000000e+00 1455/1497 (97%) EPI1134045 A/duck/Mongolia/30/2011 (A/H3N8) segment 5 (NP) 2532.9 0.000000e+00 1455/1497 (97%) EPI1117262 A/M_Swan/NL-Groningen/16015826-001/2016 (A/H5N5) segment 5 (NP) 2532.9 0.000000e+00 1455/1497 (97%) EPI1001771 A/grey heron/Germany-SN/R572/2017 (A/H5N5) segment 5 (NP) 2532.9 0.000000e+00 1455/1497 (97%) EPI990771 A/greylag goose/Germany-NIAR11353-L02142/2016 (A/H5N5) segment 5 (NP) 2532.9 0.000000e+00 1455/1497 (97%) EPI954803 A/wigeon/Italy/16VIR9616-3/2016 (A/H5N5) segment 5 (NP) 2532.9 0.000000e+00 1455/1497 (97%) EPI954616 A/gadwall/Italy/17VIR133-2/2017 (A/H5N5) segment 5 (NP) 2532.9 0.000000e+00 1455/1497 (97%) EPI889141 A/wild bird/Jiangxi/P419/2016 (A/H6N8) segment 5 (NP) 2532.9 0.000000e+00 1455/1497 (97%) EPI884242 A/shoveler/Chany/82K/2014 (A/H3N8) segment 5 (NP) 2532.9 0.000000e+00 1455/1497 (97%) EPI683042 A/chicken/Wuhan/WHJF/2014 (A/H5N2) segment 5 (NP) 2532.9 0.000000e+00 1455/1497 (97%) EPI617996 A/mallard/Republic of Georgia/3/2010 (A/H7N3) segment 5 (NP) 2532.9 0.000000e+00 1455/1497 (97%) EPI601836 A/duck/Jiangxi/17142/2013 (A/H0) segment 5 (NP) 2532.9 0.000000e+00 1456/1498 (97%) EPI591924 A/wild bird/Jiangxi/35982/2013 (A/H7N7) segment 5 (NP) 2532.9 0.000000e+00 1455/1497 (97%) EPI591912 A/wild bird/Jiangxi/34458/2013 (A/H7N7) segment 5 (NP) 2532.9 0.000000e+00 1455/1497 (97%) EPI703477 A/duck/Yunan/V286/2012 (A/H1N2) segment 5 (NP) 2531.0 0.000000e+00 1454/1496 (97%) EPI407865 A/Khaki Campbell duck/Karachi/NARC-23963/2010 (A/H4N6) segment 5 (NP) 2529.2 0.000000e+00 1454/1497 (97%) EPI1159834 A/Duck/Dongting/D76-1/2016 (A/H5N7) segment 5 (NP) 2527.3 0.000000e+00 1454/1497 (97%) EPI1061138 A/duck/Zhejiang/D6/2013 (A/H1N2) segment 5 (NP) 2527.3 0.000000e+00 1454/1497 (97%) EPI1061137 A/duck/Zhejiang/D5/2013 (A/H1N2) segment 5 (NP) 2527.3 0.000000e+00 1454/1497 (97%) EPI963334 A/duck/Bangladesh/24035/2014 (A/H10N1) segment 5 (NP) 2527.3 0.000000e+00 1454/1497 (97%) EPI962067 A/Mute_swan/Hungary/5879/2017 (A/H5N5) segment 5 (NP) 2527.3 0.000000e+00 1454/1497 (97%) EPI926005 A/domestic_duck/Siberia/49_feather/2016 (A/H6N8) segment 5 (NP) 2527.3 0.000000e+00 1454/1497 (97%) EPI925997 A/mallard/Chany/355/2016 (A/H1N1) segment 5 (NP) 2527.3 0.000000e+00 1454/1497 (97%) EPI925989 A/gadwall/Chany/315/2016 (A/H1N1) segment 5 (NP) 2527.3 0.000000e+00 1454/1497 (97%) EPI925981 A/mallard/Chany/313/2016 (A/H1N1) segment 5 (NP) 2527.3 0.000000e+00 1454/1497 (97%) EPI895347 A/Anser fabalis/China/Anhui/L256/2014 (A/H6N1) segment 5 (NP) 2527.3 0.000000e+00 1455/1498 (97%) EPI895299 A/Anser fabalis/China/Anhui/L9/2014 (A/H6N2) segment 5 (NP) 2527.3 0.000000e+00 1454/1497 (97%) EPI888671 A/swan/Germany-SN/R10645/2016 (A/H5N5) segment 5 (NP) 2527.3 0.000000e+00 1454/1497 (97%) EPI841764 A/chicken/Jiangxi/C25/2014 (A/H7N7) segment 5 (NP) 2527.3 0.000000e+00 1454/1497 (97%) EPI704447 A/duck/Mongolia/996/2015 (A/H3N8) segment 5 (NP) 2527.3 0.000000e+00 1454/1497 (97%) EPI692489 A/duck/Hubei/S2213/2012 (A/H4N2) segment 5 (NP) 2527.3 0.000000e+00 1454/1497 (97%) EPI683035 A/wild bird/Wuhan/CDHN01/2015 (A/H11N9) segment 5 (NP) 2527.3 0.000000e+00 1454/1497 (97%) EPI617968 A/mallard/Republic of Georgia/1/2010 (A/H10N7) segment 5 (NP) 2527.3 0.000000e+00 1454/1497 (97%) EPI599810 A/duck/Jiangxi/15867/2013 (A/H10N3) segment 5 (NP) 2527.3 0.000000e+00 1455/1498 (97%) EPI596424 A/duck/Vietnam/LBM439/2013 (A/H6N6) segment 5 (NP) 2527.3 0.000000e+00 1454/1497 (97%) EPI583947 A/chicken/Jiangxi/10784/2014 (A/H7N7) segment 5 (NP) 2527.3 0.000000e+00 1454/1497 (97%) EPI916521 A/mute swan/Croatia/42/2017 (A/H5N5) segment 5 (NP) 2525.5 0.000000e+00 1453/1496 (97%) EPI965425 A/black-tailed godwit/Bangladesh/24734/2015 (A/H7N5) segment 5 (NP) 2521.8 0.000000e+00 1454/1498 (97%) EPI895307 A/Anser fabalis/China/Anhui/L63/2014 (A/H6N2) segment 5 (NP) 2521.8 0.000000e+00 1453/1497 (97%) EPI683037 A/wild bird/Wuhan/CDHN173/2015 (A/H11N9) segment 5 (NP) 2521.8 0.000000e+00 1453/1497 (97%) EPI683036 A/wild bird/Wuhan/CDHN22/2015 (A/H11N9) segment 5 (NP) 2521.8 0.000000e+00 1454/1498 (97%) EPI617758 A/mallard/Republic of Georgia/14/2011 (A/H10N7) segment 5 (NP) 2521.8 0.000000e+00 1453/1497 (97%) EPI600185 A/migratory duck/Jiangxi/33520/2013 (A/H10N7) segment 5 (NP) 2521.8 0.000000e+00 1454/1498 (97%) EPI600179 A/migratory duck/Jiangxi/33238/2013 (A/H10N7) segment 5 (NP) 2521.8 0.000000e+00 1454/1498 (97%) EPI600173 A/migratory duck/Jiangxi/33195/2013 (A/H10N7) segment 5 (NP) 2521.8 0.000000e+00 1454/1498 (97%) EPI600167 A/migratory duck/Jiangxi/33158/2013 (A/H10N7) segment 5 (NP) 2521.8 0.000000e+00 1454/1498 (97%) EPI600159 A/migratory duck/Jiangxi/33038/2013 (A/H10N7) segment 5 (NP) 2521.8 0.000000e+00 1454/1498 (97%) EPI315101 A/mallard/PT/27972-B139/2007 (A/H9N2) segment 5 (NP) 2521.8 0.000000e+00 1453/1497 (97%) EPI986363 A/chicken/Croatia/104/2017 (A/H5N5) segment 5 (NP) 2520.0 0.000000e+00 1452/1496 (97%) EPI703476 A/duck/Fujian/JF47/2014 (A/H1N1) segment 5 (NP) 2520.0 0.000000e+00 1452/1496 (97%) EPI1098988 A/duck/Bangladesh/31227/2016 (A/H6N2) segment 5 (NP) 2516.3 0.000000e+00 1453/1498 (96%) EPI1006606 A/Anseriformes/Anhui/S3/2014 (A/H1N1) segment 5 (NP) 2516.3 0.000000e+00 1452/1497 (96%) EPI895275 A/Anser fabalis/China/Anhui/S65/2014 (A/H6N2) segment 5 (NP) 2516.3 0.000000e+00 1453/1498 (96%) EPI895251 A/Anser fabalis/China/Anhui/S20/2014 (A/H6N2) segment 5 (NP) 2516.3 0.000000e+00 1453/1498 (96%) EPI617770 A/mallard/Republic of Georgia/15/2011 (A/H10N7) segment 5 (NP) 2516.3 0.000000e+00 1452/1497 (96%) EPI602410 A/duck/Jiangxi/33763/2013 (A/H10N3) segment 5 (NP) 2516.3 0.000000e+00 1452/1497 (96%) EPI602350 A/duck/Jiangxi/33777/2013 (A/H10N3) segment 5 (NP) 2516.3 0.000000e+00 1452/1497 (96%) Link to comment Share on other sites More sharing options...
niman Posted February 16, 2018 Author Report Share Posted February 16, 2018 Descriptions Align Segment-ID Name Score E-Value Identity EPI1170211 A/chicken/Kostroma/1721/2017 (A/H5N2) segment 8 (NS) 1548.6 0.000000e+00 838/838 (100%) EPI1170204 A/chicken/Kostroma/1720/2017 (A/H5N2) segment 8 (NS) 1548.6 0.000000e+00 838/838 (100%) EPI1170195 A/chicken/Kostroma/1719/2017 (A/H5N2) segment 8 (NS) 1548.6 0.000000e+00 838/838 (100%) EPI1170184 A/chicken/Kostroma/1717/2017 (A/H5N2) segment 8 (NS) 1548.6 0.000000e+00 838/838 (100%) EPI1158112 A/chicken/Kostroma/1718/2017 (A/H5N2) segment 8 (NS) 1543.1 0.000000e+00 837/838 (99%) EPI890313 A/barnacle goose/Netherlands/1/2010 (A/H6N8) segment 8 (NS) 1487.7 0.000000e+00 827/838 (98%) EPI890533 A/turnstone/Netherlands/1/2010 (A/H3N8) segment 8 (NS) 1476.6 0.000000e+00 826/839 (98%) EPI889373 A/greater white-fronted goose/Netherlands/11/2009 (A/H6N1) segment 8 (NS) 1476.6 0.000000e+00 826/839 (98%) EPI889253 A/greater white-fronted goose/Netherlands/5/2010 (A/H5N3) segment 8 (NS) 1476.6 0.000000e+00 826/839 (98%) EPI514602 A/mallard/Sweden/50108/2006 (A/H4N6) segment 8 (NS) 1476.6 0.000000e+00 826/839 (98%) EPI372498 A/mallard/Ukraine/05842-NAMRU3/2006 (A/H3N8) segment 8 (NS) 1476.6 0.000000e+00 826/839 (98%) EPI1013985 A/mallard duck/Netherlands/38/2008 (A/H5N3) segment 8 (NS) 1471.1 0.000000e+00 825/839 (98%) EPI890430 A/barnacle goose/Netherlands/1/2011 (A/H6N8) segment 8 (NS) 1471.1 0.000000e+00 824/838 (98%) EPI513751 A/mallard/Sweden/79978/2008 (A/H4N6) segment 8 (NS) 1471.1 0.000000e+00 825/839 (98%) EPI1014774 A/mallard duck/Netherlands/34/2010 (A/H3N2) segment 8 (NS) 1465.5 0.000000e+00 824/839 (98%) EPI890796 A/mallard duck/Netherlands/27/2009 (A/H4N6) segment 8 (NS) 1465.5 0.000000e+00 824/839 (98%) EPI890644 A/mallard duck/Netherlands/26/2011 (A/H11N9) segment 8 (NS) 1465.5 0.000000e+00 824/839 (98%) EPI514948 A/mallard/Sweden/52405/2006 (A/H0) segment 8 (NS) 1465.5 0.000000e+00 824/839 (98%) EPI367577 A/mallard/Czech Republic/14333-1K/2011 (A/H3N8) segment 8 (NS) 1465.5 0.000000e+00 824/839 (98%) EPI1014569 A/mallard duck/Netherlands/16/2014 (A/H2N9) segment 8 (NS) 1460.0 0.000000e+00 823/839 (98%) EPI1011300 A/white-fronted goose/Netherlands/3/2010 (A/H5N2) segment 8 (NS) 1460.0 0.000000e+00 823/839 (98%) EPI1011021 A/mallard duck/Netherlands/14/2014 (A/H2N9) segment 8 (NS) 1460.0 0.000000e+00 823/839 (98%) EPI890402 A/greater white-fronted goose/Netherlands/2/2010 (A/H5N2) segment 8 (NS) 1460.0 0.000000e+00 823/839 (98%) EPI890365 A/Eurasian teal/Netherlands/1/2011 (A/H3N8) segment 8 (NS) 1460.0 0.000000e+00 823/839 (98%) EPI890209 A/mallard duck/Netherlands/24/2013 (A/H4N6) segment 8 (NS) 1460.0 0.000000e+00 822/838 (98%) EPI889779 A/mallard duck/Netherlands/15/2011 (A/H6N8) segment 8 (NS) 1460.0 0.000000e+00 823/839 (98%) EPI1014533 A/mallard duck/Netherlands/18/2014 (A/H1N1) segment 8 (NS) 1456.3 0.000000e+00 821/837 (98%) EPI1133534 A/black-necked crane/Zhaotong/ZT-12/2013 (A/H1N2) segment 8 (NS) 1454.4 0.000000e+00 822/839 (97%) EPI1013926 A/mallard duck/Netherlands/9/2014 (A/H6N2) segment 8 (NS) 1454.4 0.000000e+00 822/839 (97%) EPI1013491 A/white-fronted goose/Netherlands/5/2011 (A/H6N8) segment 8 (NS) 1454.4 0.000000e+00 822/839 (97%) EPI890612 A/mallard duck/Netherlands/10/2012 (A/H6N1) segment 8 (NS) 1454.4 0.000000e+00 822/839 (97%) EPI475943 A/great black-backed gull/Iceland/1110/2011 (A/H5N2) segment 8 (NS) 1454.4 0.000000e+00 822/839 (97%) EPI890141 A/mallard duck/Netherlands/20/2011 (A/H6N8) segment 8 (NS) 1448.9 0.000000e+00 821/839 (97%) EPI845240 A/mallard/Sweden/141546/2013 (A/H3N6) segment 8 (NS) 1448.9 0.000000e+00 821/839 (97%) EPI309095 A/spur-winged goose/Nigeria/210/2008 (A/H5N2) segment 8 (NS) 1448.9 0.000000e+00 821/839 (97%) EPI284361 A/mallard/Czech Republic/15902-17K/2009 (A/H6N2) segment 8 (NS) 1448.9 0.000000e+00 821/839 (97%) EPI925974 A/pintail/Chany/198/2016 (A/H3N8) segment 8 (NS) 1443.4 0.000000e+00 820/839 (97%) EPI890903 A/mallard duck/Netherlands/3/2015 (A/H7N7) segment 8 (NS) 1443.4 0.000000e+00 820/839 (97%) EPI890133 A/mallard duck/Netherlands/2/2015 (A/H7N7) segment 8 (NS) 1443.4 0.000000e+00 820/839 (97%) EPI889772 A/greater white-fronted goose/Netherlands/6/2011 (A/H6N8) segment 8 (NS) 1443.4 0.000000e+00 820/839 (97%) EPI525965 A/eurasian wigeon/Mongolia/340V/2009 (A/H4N6) segment 8 (NS) 1443.4 0.000000e+00 821/840 (97%) EPI387548 A/white-fronted goose/Mongolia/1-125/2008 (A/H3N8) segment 8 (NS) 1443.4 0.000000e+00 820/839 (97%) EPI306425 A/shoveler/Koymor/118/2009 (A/H3) segment 8 (NS) 1443.4 0.000000e+00 821/840 (97%) EPI925966 A/mallard/Chany/185/2016 (A/H3N8) segment 8 (NS) 1437.8 0.000000e+00 819/839 (97%) EPI925958 A/teal/Chany/135/2016 (A/H3N8) segment 8 (NS) 1437.8 0.000000e+00 819/839 (97%) EPI718530 A/Anas platyrhynchos/Belgium/17330cls42/2013 (A/H5N2) segment 8 (NS) 1437.8 0.000000e+00 819/839 (97%) EPI624440 A/chicken/Italy/473/1999 (A/H7N1) segment 8 (NS) 1437.8 0.000000e+00 819/839 (97%) EPI623942 A/chicken/England/26352/2015 (A/H7N7) segment 8 (NS) 1437.8 0.000000e+00 819/839 (97%) EPI618642 A/mallard/Sweden/366/2002 (A/H11N9) segment 8 (NS) 1437.8 0.000000e+00 819/839 (97%) EPI617999 A/garganey/Republic of Georgia/1/2011 (A/H4N2) segment 8 (NS) 1437.8 0.000000e+00 820/840 (97%) EPI499903 A/turkey/Italy/472/1999 (A/H7N1) segment 8 (NS) 1437.8 0.000000e+00 819/839 (97%) EPI485622 A/mallard/Sweden/16/2002 (A/H12N9) segment 8 (NS) 1437.8 0.000000e+00 819/839 (97%) EPI464812 A/turkey/Italy/472/1999 (A/H7N1) segment 8 (NS) 1437.8 0.000000e+00 819/839 (97%) EPI309096 A/spur-winged goose/Nigeria/226/2008 (A/H5N2) segment 8 (NS) 1437.8 0.000000e+00 819/839 (97%) EPI309094 A/spur-winged goose/Nigeria/2/2008 (A/H5N2) segment 8 (NS) 1437.8 0.000000e+00 819/839 (97%) EPI238668 A/turkey/Italy/977/1999 (A/H7N1) segment 8 (NS) 1437.8 0.000000e+00 819/839 (97%) EPI89829 A/turkey/Italy/3620/1999 (A/H7N1) segment 8 (NS) 1437.8 0.000000e+00 819/839 (97%) EPI69224 A/turkey/Italy/1265/99 (A/H7N1) segment 8 (NS) 1437.8 0.000000e+00 819/839 (97%) EPI68189 A/turkey/Italy/977/99 (A/H7N1) segment 8 (NS) 1437.8 0.000000e+00 819/839 (97%) EPI505522 A/chicken/Italy/1081/1999 (A/H7N1) segment 8 (NS) 1434.1 0.000000e+00 818/839 (97%) EPI619108 A/mallard/Sweden/99377/2009 (A/H8N4) segment 8 (NS) 1432.3 0.000000e+00 819/840 (97%) EPI619006 A/mallard/Sweden/770/2002 (A/H10N6) segment 8 (NS) 1432.3 0.000000e+00 818/839 (97%) EPI618993 A/mallard/Sweden/768/2002 (A/H10N6) segment 8 (NS) 1432.3 0.000000e+00 818/839 (97%) EPI618977 A/mallard/Sweden/766/2002 (A/H0) segment 8 (NS) 1432.3 0.000000e+00 818/839 (97%) EPI618491 A/mallard/Sweden/101589/2009 (A/H11N9) segment 8 (NS) 1432.3 0.000000e+00 819/840 (97%) EPI505571 A/turkey/Italy/1555/1999 (A/H7N1) segment 8 (NS) 1432.3 0.000000e+00 818/839 (97%) EPI505542 A/turkey/Italy/1085/1999 (A/H7N1) segment 8 (NS) 1432.3 0.000000e+00 818/839 (97%) EPI505529 A/turkey/Italy/1083/1999 (A/H7N1) segment 8 (NS) 1432.3 0.000000e+00 818/839 (97%) EPI485680 A/mallard/Sweden/21/2002 (A/H5N2) segment 8 (NS) 1432.3 0.000000e+00 818/839 (97%) EPI485625 A/Eurasian wigeon/Netherlands/4/2000 (A/H6N2) segment 8 (NS) 1432.3 0.000000e+00 818/839 (97%) EPI485537 A/mallard/Sweden/43/2002 (A/H10N5) segment 8 (NS) 1432.3 0.000000e+00 818/839 (97%) EPI433416 A/mallard/Czech Republic/15962-4T/2010 (A/H6N9) segment 8 (NS) 1432.3 0.000000e+00 819/840 (97%) EPI433409 A/mallard/Czech Republic/15902-25K/2009 (A/H11N9) segment 8 (NS) 1432.3 0.000000e+00 819/840 (97%) EPI433390 A/mallard/Czech Republic/15902-18K/2009 (A/H6N9) segment 8 (NS) 1432.3 0.000000e+00 819/840 (97%) EPI367601 A/mallard/Czech Republic/15962-1T/2010 (A/H6N9) segment 8 (NS) 1432.3 0.000000e+00 819/840 (97%) EPI327348 A/turkey/Italy/1067/1999 (A/H7N1) segment 8 (NS) 1432.3 0.000000e+00 818/839 (97%) EPI314712 A/mallard/Czech Republic/15902-18K/2009 (A/H11N9) segment 8 (NS) 1432.3 0.000000e+00 819/840 (97%) EPI251709 A/mallard/Sweden/41/2002 (A/H10N6) segment 8 (NS) 1432.3 0.000000e+00 818/839 (97%) EPI238411 A/chicken/Italy/1067/1999 (A/H7N1) segment 8 (NS) 1432.3 0.000000e+00 818/839 (97%) EPI236182 A/mallard/Sweden/21/2002 (A/H5N2) segment 8 (NS) 1432.3 0.000000e+00 818/839 (97%) EPI89841 A/turkey/Italy/4169/99 (A/H7N1) segment 8 (NS) 1432.3 0.000000e+00 818/839 (97%) EPI63324 A/chicken/Italy/1082/1999 (A/H7N1) segment 8 (NS) 1432.3 0.000000e+00 818/839 (97%) EPI505579 A/turkey/Italy/2716/1999 (A/H7N1) segment 8 (NS) 1428.6 0.000000e+00 817/839 (97%) EPI619115 A/mallard/Sweden/101165/2009 (A/H8N4) segment 8 (NS) 1426.7 0.000000e+00 818/840 (97%) EPI514670 A/mallard/Sweden/7582/2003 (A/H4N6) segment 8 (NS) 1426.7 0.000000e+00 817/839 (97%) EPI438359 A/chicken/Italy/1279/1999 (A/H7N1) segment 8 (NS) 1426.7 0.000000e+00 817/839 (97%) EPI372514 A/garganey/Ukraine/05839-NAMRU3/2006 (A/H14N6) segment 8 (NS) 1426.7 0.000000e+00 817/839 (97%) EPI364119 A/duck/Fujian/3264/2007 (A/H6N6) segment 8 (NS) 1426.7 0.000000e+00 818/840 (97%) EPI327341 A/chicken/Italy/1391/1999 (A/H7N1) segment 8 (NS) 1426.7 0.000000e+00 817/839 (97%) EPI238621 A/turkey/Italy/2732/1999 (A/H7N1) segment 8 (NS) 1426.7 0.000000e+00 817/839 (97%) EPI238300 A/turkey/Italy/2379/2000 (A/H7N1) segment 8 (NS) 1426.7 0.000000e+00 817/839 (97%) EPI235568 A/Anas angustirostris/Astrakhan/3088/2002 (A/H4N8) segment 8 (NS) 1426.7 0.000000e+00 817/839 (97%) EPI69205 A/turkey/Italy/2732/1999 (A/H7N1) segment 8 (NS) 1426.7 0.000000e+00 817/839 (97%) EPI69186 A/turkey/Italy/2715/99 (A/H7N1) segment 8 (NS) 1426.7 0.000000e+00 817/839 (97%) EPI69148 A/turkey/Italy/3489/99 (A/H7N1) segment 8 (NS) 1426.7 0.000000e+00 817/839 (97%) EPI68512 A/turkey/Italy/3488/1999 (A/H7N1) segment 8 (NS) 1426.7 0.000000e+00 817/839 (97%) EPI68493 A/turkey/Italy/3185/99 (A/H7N1) segment 8 (NS) 1426.7 0.000000e+00 817/839 (97%) EPI505543 A/turkey/Italy/1086/1999 (A/H7N1) segment 8 (NS) 1423.0 0.000000e+00 816/839 (97%) EPI225341 A/pelican/Zambia/01/2006 (A/H3N6) segment 8 (NS) 1423.0 0.000000e+00 815/837 (97%) EPI1010900 A/mallard duck/Netherlands/46/2006 (A/H1N1) segment 8 (NS) 1421.2 0.000000e+00 816/839 (97%) Link to comment Share on other sites More sharing options...
niman Posted February 28, 2018 Author Report Share Posted February 28, 2018 Isolate name: A/chicken/Kostroma/1720/2017 Isolate ID: EPI_ISL_297465 Passage details/history: original Type: A / H5N2 Lineage: Sample information Collection date: 2017-12-22 Host Gallus gallus domesticus Additional host information: Domestic status: Domestic Is vaccinated: Location: Russian Federation / Kostroma Oblast Additional location information: Health status: Dead Specimen source: Organ Strain or commercial product name used for vaccination: Institute information Originating lab: Sample ID given by the sample provider: Address: Submitting lab: State Research Center of Virology and Biotechnology (VECTOR) Sample ID given by the submitting laboratory: Authors: Ivan,Susloparov; Natalya,Goncharova; Natalya,Kolosova; Vasiliy,Marchenko; Alexander,Ryzhikov Address: State Research Center of Virology and Biotechnology (VECTOR) Emerging Zoonotic Diseases and Influenza Vector Street Build 12 630559 Koltsovo Russian Federation Publication Publication In vivo antiviral resistance Phenotype Genotype Unspecified Antiviral resistance tested by experimental procedures Adamantanes: Unknown Oseltamivir: Unknown Zanamivir: Unknown Peramivir: Unknown Other: Unknown Additional information Antigenic characterization: Note: Sequence segment identifier length accession # INSDC Sequence PB2 A/chicken/Kostroma/1720/2017 2329 EPI1170206 PB1 A/chicken/Kostroma/1720/2017 2329 EPI1170205 PA A/chicken/Kostroma/1720/2017 2221 EPI1170198 HA A/chicken/Kostroma/1720/2017 1776 EPI1170199 NP A/chicken/Kostroma/1720/2017 1565 EPI1170203 NA A/chicken/Kostroma/1720/2017 1394 EPI1170201 MP A/chicken/Kostroma/1720/2017 1027 EPI1170200 NS A/chicken/Kostroma/1720/2017 890 EPI1170204 Submitter information Submitter: Susloparov, Ivan Submission Date: 2018-02-09 Last modifier: Susloparov, Ivan Last modified: 2018-02-11 Address: State Research Center of Virology and Biotechnology (VECTOR) Emerging Zoonotic Diseases and Influenza Vector Street Build 12 630559 Koltsovo Russian Federation Link to comment Share on other sites More sharing options...
niman Posted February 28, 2018 Author Report Share Posted February 28, 2018 Isolate name: A/chicken/Kostroma/1719/2017 Isolate ID: EPI_ISL_297464 Passage details/history: original Type: A / H5N2 Lineage: Sample information Collection date: 2017-12-22 Host Gallus gallus domesticus Additional host information: Domestic status: Domestic Is vaccinated: Location: Russian Federation / Kostroma Oblast Additional location information: Health status: Dead Specimen source: Organ Strain or commercial product name used for vaccination: Institute information Originating lab: Sample ID given by the sample provider: Address: Submitting lab: State Research Center of Virology and Biotechnology (VECTOR) Sample ID given by the submitting laboratory: Authors: Ivan,Susloparov; Natalya,Goncharova; Natalya,Kolosova; Vasiliy,Marchenko; Alexander,Ryzhikov Address: State Research Center of Virology and Biotechnology (VECTOR) Emerging Zoonotic Diseases and Influenza Vector Street Build 12 630559 Koltsovo Russian Federation Publication Publication In vivo antiviral resistance Phenotype Genotype Unspecified Antiviral resistance tested by experimental procedures Adamantanes: Unknown Oseltamivir: Unknown Zanamivir: Unknown Peramivir: Unknown Other: Unknown Additional information Antigenic characterization: Note: Sequence segment identifier length accession # INSDC Sequence PB2 A/chicken/Kostroma/1719/2017 2329 EPI1170197 PB1 A/chicken/Kostroma/1719/2017 2329 EPI1170196 PA A/chicken/Kostroma/1719/2017 2221 EPI1170190 HA A/chicken/Kostroma/1719/2017 1776 EPI1170191 NP A/chicken/Kostroma/1719/2017 1565 EPI1170194 NA A/chicken/Kostroma/1719/2017 1394 EPI1170193 MP A/chicken/Kostroma/1719/2017 1027 EPI1170192 NS A/chicken/Kostroma/1719/2017 890 EPI1170195 Submitter information Submitter: Susloparov, Ivan Submission Date: 2018-02-09 Last modifier: Susloparov, Ivan Last modified: 2018-02-11 Address: State Research Center of Virology and Biotechnology (VECTOR) Emerging Zoonotic Diseases and Influenza Vector Street Build 12 630559 Koltsovo Russian Federation Link to comment Share on other sites More sharing options...
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