H5N2 Clade 2.3.4.4 Confirmed In Kostromskaya Russia

niman · February 16, 2018

Vector Labs has confirmed that the HPAI H5N2 in Kostromskaya Russia is Clade 2.3.4.4 with H5, MP, and PA matching prior clade 2.3.4.4 isolates.

niman · February 16, 2018

eleased files

	edit	Name	Isolate ID	Subtype	Passage	PB2	PB1	PA	HA	NP	NA	MP	NS	HE	P3	Collection date

Name	Isolate ID	Subtype	Passage	PB2	PB1	PA	HA	NP	NA	MP	NS	HE	P3	Collection date
A/chicken/Kostroma/1721/2017	EPI_ISL_297466	H5N2	original	2329	2329	2221	1776	1565	1394	1027	890	---	---	2017-12-22
A/chicken/Kostroma/1720/2017	EPI_ISL_297465	H5N2	original	2329	2329	2221	1776	1565	1394	1027	890	---	---	2017-12-22
A/chicken/Kostroma/1719/2017	EPI_ISL_297464	H5N2	original	2329	2329	2221	1776	1565	1394	1027	890	---	---	2017-12-22
A/chicken/Kostroma/1717/2017	EPI_ISL_297463	H5N2	original	2329	2329	2221	1776	1565	1394	1027	890	---	---	2017-12-22

niman · February 16, 2018

Isolate detail

Isolate name:

A/chicken/Kostroma/1721/2017

Isolate ID:

EPI_ISL_297466

Passage details/history:

original

Type:

A / H5N2

Lineage:

Sample information

Collection date:

2017-12-22

Host	Gallus gallus domesticus

Additional host information:

Domestic status:

Domestic

Is vaccinated:

Location:

Russian Federation / Kostroma Oblast

Additional location information:

Health status:

Dead

Specimen source:

Organ

Strain or commercial product name used for vaccination:

Institute information

Originating lab:

Sample ID given by the sample provider:

Address:

Submitting lab:

State Research Center of Virology and Biotechnology (VECTOR)

Sample ID given by the submitting laboratory:

Authors:

Ivan,Susloparov;
Natalya,Goncharova;
Natalya,Kolosova;
Vasiliy,Marchenko;
Alexander,Ryzhikov

Address:

State Research Center of Virology and Biotechnology (VECTOR)
Emerging Zoonotic Diseases and Influenza
Vector Street Build 12 
630559 Koltsovo
Russian Federation

Publication

In vivo antiviral resistance

Antiviral resistance tested by experimental procedures

Adamantanes:

Unknown

Oseltamivir:

Unknown

Zanamivir:

Unknown

Peramivir:

Unknown

Other:

Unknown

Additional information

Antigenic characterization:

Note:

Sequence

segment	identifier	length	accession #
PB2	A/chicken/Kostroma/1721/2017	2329	EPI1170213
PB1	A/chicken/Kostroma/1721/2017	2329	EPI1170212
PA	A/chicken/Kostroma/1721/2017	2221	EPI1170207
HA	A/chicken/Kostroma/1721/2017	1776	EPI1170208
NP	A/chicken/Kostroma/1721/2017	1565	EPI1170210
NA	A/chicken/Kostroma/1721/2017	1394	EPI1170209
MP	A/chicken/Kostroma/1721/2017	1027	EPI1170214
NS	A/chicken/Kostroma/1721/2017	890	EPI1170211

Submitter information

Submitter:

Susloparov, Ivan

Submission Date:

2018-02-09

Last modifier:

Susloparov, Ivan

Last modified:

2018-02-11

Address:

State Research Center of Virology and Biotechnology (VECTOR)
Emerging Zoonotic Diseases and Influenza
Vector Street Build 12 
630559 Koltsovo
Russian Federation

niman · February 16, 2018

Descriptions

Segment-ID	Name	Score	E-Value	Identity
EPI1170208	A/chicken/Kostroma/1721/2017 (A/H5N2) segment 4 (HA)	3147.8	0.000000e+00	1704/1704 (100%)
EPI1170199	A/chicken/Kostroma/1720/2017 (A/H5N2) segment 4 (HA)	3147.8	0.000000e+00	1704/1704 (100%)
EPI1170191	A/chicken/Kostroma/1719/2017 (A/H5N2) segment 4 (HA)	3147.8	0.000000e+00	1704/1704 (100%)
EPI1170180	A/chicken/Kostroma/1717/2017 (A/H5N2) segment 4 (HA)	3147.8	0.000000e+00	1704/1704 (100%)
EPI1158108	A/chicken/Kostroma/1718/2017 (A/H5N2) segment 4 (HA)	3147.8	0.000000e+00	1704/1704 (100%)
EPI1010500	A/green-winged teal/Egypt/877/2016 (A/H5N8) segment 4 (HA)	3103.5	0.000000e+00	1696/1704 (99%)
EPI1010489	A/green-winged teal/Egypt/871/2016 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1695/1704 (99%)
EPI926613	A/domestic duck/Siberia/103/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI926605	A/domestic duck/Siberia/50K/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI925956	A/gadwall/Chany/97/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI1006681	A/common teal/Korea/W549/2016 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI1006680	A/common teal/Korea/W547/2016 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI990794	A/greylag goose/Germany-NI/AR1395-L02144/2017 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI969347	A/turkey/Germany-BB/R377ff/2017 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI952639	A/chicken/Korea/H903/2017 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI909452	A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI869936	A/chicken/Kalmykia/2661/2016 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI869931	A/turkey/Poland/83/2016 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI869930	A/turkey/Poland/78/2016 (A/H5N8) segment 4 (HA)	3061.0	0.000000e+00	1688/1704 (99%)
EPI1034974	A/grey heron/W779/2017 (A/H5N8) segment 4 (HA)	3059.2	0.000000e+00	1688/1704 (99%)
EPI1006705	A/common teal/Korea/W555/2017 (A/H5N8) segment 4 (HA)	3059.2	0.000000e+00	1688/1704 (99%)
EPI1006704	A/common teal/Korea/W550/2016 (A/H5N8) segment 4 (HA)	3059.2	0.000000e+00	1688/1704 (99%)
EPI1006703	A/common teal/Korea/W548/2016 (A/H5N8) segment 4 (HA)	3059.2	0.000000e+00	1688/1704 (99%)
EPI990802	A/greylag goose/Germany-NI/AR703-L02138/2017 (A/H5N8) segment 4 (HA)	3059.2	0.000000e+00	1688/1704 (99%)
EPI954567	A/turkey/Italy/17VIR538-1/2017 (A/H5N8) segment 4 (HA)	3059.2	0.000000e+00	1688/1704 (99%)
EPI952782	A/mallard duck/Korea/WA137/2017 (A/H5N8) segment 4 (HA)	3059.2	0.000000e+00	1688/1704 (99%)
EPI916604	A/bronze turkey/Czech Republic/1414-17/2017 (H5N8) (A/H5N8) segment 4 (HA)	3059.2	0.000000e+00	1688/1704 (99%)
EPI773757	A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 4 (HA)	3059.2	0.000000e+00	1689/1705 (99%)
EPI907346	A/domestic duck/Germany-BB/R681ff/2017 (A/H5N8) segment 4 (HA)	3055.5	0.000000e+00	1686/1702 (99%)
EPI1176527	A/turkey/Israel/1076/2016 (A/H5N8) segment 4 (HA)	3053.6	0.000000e+00	1687/1704 (99%)
EPI1021106	A/mute swan/Czech Republic/1296-17_1/2017 (H5N8) (A/H5N8) segment 4 (HA)	3053.6	0.000000e+00	1687/1704 (99%)
EPI931207	A/turkey/Germany-BB/R234ff/2017 (A/H5N8) segment 4 (HA)	3053.6	0.000000e+00	1687/1704 (99%)
EPI881901	A/mute swan/Croatia/15/2017 (A/H5N8) segment 4 (HA)	3053.6	0.000000e+00	1687/1704 (99%)
EPI858844	A/painted stork/India/10CA03/2016 (A/H5N8) segment 4 (HA)	3053.6	0.000000e+00	1687/1704 (99%)
EPI836614	A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 4 (HA)	3053.6	0.000000e+00	1687/1704 (99%)
EPI836606	A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 4 (HA)	3053.6	0.000000e+00	1687/1704 (99%)
EPI823756	A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 4 (HA)	3053.6	0.000000e+00	1687/1704 (99%)
EPI823748	A/wild duck/Tyva/35/2016 (A/H5N8) segment 4 (HA)	3053.6	0.000000e+00	1687/1704 (99%)
EPI823460	A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 4 (HA)	3053.6	0.000000e+00	1687/1704 (99%)
EPI774394	A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 4 (HA)	3053.6	0.000000e+00	1687/1704 (99%)
EPI774386	A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 4 (HA)	3053.6	0.000000e+00	1687/1704 (99%)
EPI774310	A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 4 (HA)	3053.6	0.000000e+00	1687/1704 (99%)
EPI774242	A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 4 (HA)	3053.6	0.000000e+00	1687/1704 (99%)
EPI774234	A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 4 (HA)	3053.6	0.000000e+00	1687/1704 (99%)
EPI774121	A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 4 (HA)	3053.6	0.000000e+00	1687/1704 (99%)
EPI774113	A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 4 (HA)	3053.6	0.000000e+00	1687/1704 (99%)
EPI1176530	A/peregrine falcon/Israel/1086/2016 (A/H5N8) segment 4 (HA)	3048.1	0.000000e+00	1686/1704 (98%)
EPI1169147	A/chicken/Rostov-on-Don/1321/2017 (A/H5N8) segment 4 (HA)	3048.1	0.000000e+00	1686/1704 (98%)
EPI1159809	A/Anser cygnoides/Hubei/FW44/2016 (A/H5N8) segment 4 (HA)	3048.1	0.000000e+00	1686/1704 (98%)
EPI954877	A/Mallard/Hungary/1574a/2017 (A/H5N8) segment 4 (HA)	3048.1	0.000000e+00	1686/1704 (98%)
EPI954861	A/Mallard/Hungary/1574b/2017 (A/H5N8) segment 4 (HA)	3048.1	0.000000e+00	1686/1704 (98%)
EPI954559	A/swan/Italy/17VIR537-2/2017 (A/H5N8) segment 4 (HA)	3048.1	0.000000e+00	1686/1704 (98%)
EPI873624	A/mute swan/Croatia/9/2017 (A/H5N8) segment 4 (HA)	3048.1	0.000000e+00	1686/1704 (98%)
EPI864746	A/mute swan/Croatia/85/2016 (A/H5N8) segment 4 (HA)	3048.1	0.000000e+00	1686/1704 (98%)
EPI861568	A/mute swan/Croatia/70/2016 (A/H5N8) segment 4 (HA)	3048.1	0.000000e+00	1686/1704 (98%)
EPI860519	A/goose/Hungary/55128/2016 (A/H5N8) segment 4 (HA)	3048.1	0.000000e+00	1686/1704 (98%)
EPI774475	A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 4 (HA)	3048.1	0.000000e+00	1686/1704 (98%)
EPI774458	A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 4 (HA)	3048.1	0.000000e+00	1686/1704 (98%)
EPI774450	A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 4 (HA)	3048.1	0.000000e+00	1686/1704 (98%)
EPI774402	A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 4 (HA)	3048.1	0.000000e+00	1686/1704 (98%)
EPI774378	A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 4 (HA)	3048.1	0.000000e+00	1686/1704 (98%)
EPI774326	A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 4 (HA)	3048.1	0.000000e+00	1686/1704 (98%)
EPI774318	A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 4 (HA)	3048.1	0.000000e+00	1686/1704 (98%)
EPI774302	A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 4 (HA)	3048.1	0.000000e+00	1686/1704 (98%)
EPI774277	A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 4 (HA)	3048.1	0.000000e+00	1686/1704 (98%)
EPI774267	A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 4 (HA)	3048.1	0.000000e+00	1686/1704 (98%)
EPI774259	A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 4 (HA)	3048.1	0.000000e+00	1686/1704 (98%)
EPI774251	A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 4 (HA)	3048.1	0.000000e+00	1686/1704 (98%)
EPI774226	A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 4 (HA)	3048.1	0.000000e+00	1686/1704 (98%)
EPI774218	A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 4 (HA)	3048.1	0.000000e+00	1686/1704 (98%)
EPI774210	A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 4 (HA)	3048.1	0.000000e+00	1686/1704 (98%)
EPI774201	A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 4 (HA)	3048.1	0.000000e+00	1686/1704 (98%)
EPI774193	A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 4 (HA)	3048.1	0.000000e+00	1686/1704 (98%)
EPI774185	A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 4 (HA)	3048.1	0.000000e+00	1686/1704 (98%)
EPI774176	A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 4 (HA)	3048.1	0.000000e+00	1686/1704 (98%)
EPI774168	A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 4 (HA)	3048.1	0.000000e+00	1686/1704 (98%)
EPI774159	A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 4 (HA)	3048.1	0.000000e+00	1686/1704 (98%)
EPI774150	A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 4 (HA)	3048.1	0.000000e+00	1686/1704 (98%)
EPI978865	A/mute swan/Germany-TH/R1126/2017 (A/H5N8) segment 4 (HA)	3046.2	0.000000e+00	1685/1704 (98%)
EPI869924	A/domestic goose/Poland/33/2016 (A/H5N8) segment 4 (HA)	3044.4	0.000000e+00	1685/1704 (98%)
EPI1169201	A/chicken/Rostov-on-Don/1598/2017 (A/H5N8) segment 4 (HA)	3042.6	0.000000e+00	1685/1704 (98%)
EPI1159825	A/Cygnus atratus/Hubei/HF-1/2016 (A/H5N8) segment 4 (HA)	3042.6	0.000000e+00	1685/1704 (98%)
EPI1159817	A/Cygnus atratus/Hubei/2Z2-O/2016 (A/H5N8) segment 4 (HA)	3042.6	0.000000e+00	1685/1704 (98%)
EPI1032549	A/Mulard_duck/Hungary/59163/2016 (A/H5N8) segment 4 (HA)	3042.6	0.000000e+00	1685/1704 (98%)
EPI1032532	A/Mulard_duck/Hungary/62902/2016 (A/H5N8) segment 4 (HA)	3042.6	0.000000e+00	1685/1704 (98%)
EPI1032524	A/Mulard_duck/Hungary/60369/2016 (A/H5N8) segment 4 (HA)	3042.6	0.000000e+00	1685/1704 (98%)
EPI1032508	A/Goose/Hungary/17985/2017 (A/H5N8) segment 4 (HA)	3042.6	0.000000e+00	1685/1704 (98%)
EPI1032492	A/Goose/Hungary/17051/2017 (A/H5N8) segment 4 (HA)	3042.6	0.000000e+00	1685/1704 (98%)
EPI1032484	A/Goose/Hungary/15729/2017 (A/H5N8) segment 4 (HA)	3042.6	0.000000e+00	1685/1704 (98%)
EPI1032476	A/Goose/Hungary/17261/2017 (A/H5N8) segment 4 (HA)	3042.6	0.000000e+00	1685/1704 (98%)
EPI1021135	A/quail/Czech Republic/2063-17_1/2017 (H5N8) (A/H5N8) segment 4 (HA)	3042.6	0.000000e+00	1685/1704 (98%)
EPI1021132	A/goose/Czech Republic/1954-17/2017 (H5N8) (A/H5N8) segment 4 (HA)	3042.6	0.000000e+00	1685/1704 (98%)
EPI1019638	A/Eur_Wig/NL-Zoeterwoude/16015702-010/2016 (A/H5N8) segment 4 (HA)	3042.6	0.000000e+00	1685/1704 (98%)
EPI1019582	A/Eur_Wig/NL-Leidschendam/16015697-007/2016 (A/H5N8) segment 4 (HA)	3042.6	0.000000e+00	1685/1704 (98%)
EPI1019550	A/Eur_Wig/NL-Gouda/16015824-001/2016 (A/H5N8) segment 4 (HA)	3042.6	0.000000e+00	1685/1704 (98%)
EPI1019518	A/Eur_Wig/NL-De Waal (Texel)/16014891-004/2016 (A/H5N8) segment 4 (HA)	3042.6	0.000000e+00	1685/1704 (98%)
EPI1019510	A/Eur_Wig/NL-De Waal (Texel)/16014891-003/2016 (A/H5N8) segment 4 (HA)	3042.6	0.000000e+00	1685/1704 (98%)
EPI964917	A/chicken/Czech Republic/206-17_2/2017 (A/H5N8) segment 4 (HA)	3042.6	0.000000e+00	1685/1704 (98%)
EPI962046	A/Duck/Hungary/54738/2016 (A/H5N8) segment 4 (HA)	3042.6	0.000000e+00	1685/1704 (98%)
EPI961525	A/chicken/Italy/17VIR1751-3/2017 (A/H5N8) segment 4 (HA)	3042.6	0.000000e+00	1685/1704 (98%)

niman · February 16, 2018

Descriptions

Segment-ID	Name	Score	E-Value	Identity
EPI1170209	A/chicken/Kostroma/1721/2017 (A/H5N2) segment 6 (NA)	2501.5	0.000000e+00	1354/1354 (100%)
EPI1170201	A/chicken/Kostroma/1720/2017 (A/H5N2) segment 6 (NA)	2501.5	0.000000e+00	1354/1354 (100%)
EPI1170193	A/chicken/Kostroma/1719/2017 (A/H5N2) segment 6 (NA)	2501.5	0.000000e+00	1354/1354 (100%)
EPI1170182	A/chicken/Kostroma/1717/2017 (A/H5N2) segment 6 (NA)	2501.5	0.000000e+00	1354/1354 (100%)
EPI1158110	A/chicken/Kostroma/1718/2017 (A/H5N2) segment 6 (NA)	2501.5	0.000000e+00	1354/1354 (100%)
EPI890019	A/greater white-fronted goose/Netherlands/3/2011 (A/H6N2) segment 6 (NA)	2100.8	0.000000e+00	1169/1185 (98%)
EPI889275	A/gadwall duck/Netherlands/1/2011 (A/H6N2) segment 6 (NA)	2089.7	0.000000e+00	1167/1185 (98%)
EPI617878	A/mallard/Republic of Georgia/13/2011 (A/H6N2) segment 6 (NA)	2087.8	0.000000e+00	1166/1184 (98%)
EPI895332	A/Anser fabalis/China/Anhui/L180/2014 (A/H6N2) segment 6 (NA)	2062.0	0.000000e+00	1162/1185 (98%)
EPI895260	A/Anser fabalis/China/Anhui/S39/2014 (A/H6N2) segment 6 (NA)	2062.0	0.000000e+00	1162/1185 (98%)
EPI334401	A/Teal/Norway/10_1037/2010 (A/H3N2) segment 6 (NA)	2062.0	0.000000e+00	1148/1164 (98%)
EPI691796	A/duck/Sichuan/183/2013 (A/H9N2) segment 6 (NA)	2060.1	0.000000e+00	1151/1169 (98%)
EPI222089	A/garganey/Altai/1213/2007 (A/H5N2) segment 6 (NA)	2060.1	0.000000e+00	1151/1169 (98%)
EPI222049	A/gadwall/Altai/1202/2007 (A/H5N2) segment 6 (NA)	2060.1	0.000000e+00	1151/1169 (98%)
EPI1010901	A/mallard duck/Netherlands/9/2014 (A/H6N2) segment 6 (NA)	2056.4	0.000000e+00	1161/1185 (97%)
EPI895276	A/Anser fabalis/China/Anhui/S65/2014 (A/H6N2) segment 6 (NA)	2056.4	0.000000e+00	1161/1185 (97%)
EPI704309	A/duck/Mongolia/154/2015 (A/H0N2) segment 6 (NA)	2056.4	0.000000e+00	1161/1185 (97%)
EPI704301	A/duck/Mongolia/141/2015 (A/H0N2) segment 6 (NA)	2056.4	0.000000e+00	1161/1185 (97%)
EPI693716	A/duck/Mongolia/66/2015 (A/H10N2) segment 6 (NA)	2056.4	0.000000e+00	1161/1185 (97%)
EPI182381	A/mallard/Xuyi/10/2005 (A/H5N2) segment 6 (NA)	2056.4	0.000000e+00	1161/1185 (97%)
EPI377586	A/mallard/Sweden/58451/2006 (A/H2N2) segment 6 (NA)	2054.6	0.000000e+00	1161/1185 (97%)
EPI377578	A/mallard/Sweden/58112/2006 (A/H2N2) segment 6 (NA)	2049.1	0.000000e+00	1160/1185 (97%)
EPI1006614	A/Anseriformes/Anhui/S61/2014 (A/H1N2) segment 6 (NA)	2047.2	0.000000e+00	1154/1177 (98%)
EPI891121	A/mallard duck/Netherlands/7/2014 (A/H6N2) segment 6 (NA)	2045.4	0.000000e+00	1159/1185 (97%)
EPI718560	A/Anas platyrhynchos/Belgium/24311pcs5/2012 (A/H9N2) segment 6 (NA)	2045.4	0.000000e+00	1159/1185 (97%)
EPI182378	A/spotbill duck/Xuyi/18/2005 (A/H5N2) segment 6 (NA)	2045.4	0.000000e+00	1159/1185 (97%)
EPI940663	A/duck/India/11CL01/2014 (A/H6N2) segment 6 (NA)	2043.5	0.000000e+00	1150/1172 (98%)
EPI1013937	A/mallard duck/Netherlands/11/2014 (A/H6N2) segment 6 (NA)	2039.8	0.000000e+00	1158/1185 (97%)
EPI942124	A/duck/Hubei/ZYSYG15/2015 (A/H6N2) segment 6 (NA)	2039.8	0.000000e+00	1158/1185 (97%)
EPI942123	A/duck/Hubei/ZYSYG14/2015 (A/H6N2) segment 6 (NA)	2039.8	0.000000e+00	1158/1185 (97%)
EPI942122	A/duck/Hubei/ZYSYG1/2015 (A/H6N2) segment 6 (NA)	2039.8	0.000000e+00	1158/1185 (97%)
EPI118050	A/duck/Jiang Xi/1286/2005 (A/H5N2) segment 6 (NA)	2039.8	0.000000e+00	1144/1164 (98%)
EPI906566	A/Environment/Jiangxi/08488/2015 (A/H12N2) segment 6 (NA)	2038.0	0.000000e+00	1147/1169 (98%)
EPI895252	A/Anser fabalis/China/Anhui/S20/2014 (A/H6N2) segment 6 (NA)	2038.0	0.000000e+00	1147/1169 (98%)
EPI334396	A/Mallard/Norway/10_1368/2010 (A/H6N2) segment 6 (NA)	2038.0	0.000000e+00	1132/1147 (98%)
EPI181963	A/mallard/Netherlands/2/2005 (A/H4N2) segment 6 (NA)	2036.1	0.000000e+00	1154/1180 (97%)
EPI890441	A/greater white-fronted goose/Netherlands/6/2010 (A/H6N2) segment 6 (NA)	2034.3	0.000000e+00	1155/1182 (97%)
EPI118064	A/duck/Jiang Xi/3345/2005 (A/H5N2) segment 6 (NA)	2034.3	0.000000e+00	1143/1164 (98%)
EPI618503	A/mallard/Sweden/4932/2004 (A/H9N2) segment 6 (NA)	2032.4	0.000000e+00	1157/1185 (97%)
EPI363577	A/duck/Yunnan/3136/2006 (A/H6N2) segment 6 (NA)	2032.4	0.000000e+00	1146/1169 (98%)
EPI619172	A/mallard/Sweden/60041/2007 (A/H8N2) segment 6 (NA)	2030.6	0.000000e+00	1153/1180 (97%)
EPI619098	A/mallard/Sweden/68537/2007 (A/H0) segment 6 (NA)	2030.6	0.000000e+00	1153/1180 (97%)
EPI890042	A/greater white-fronted goose/Netherlands/5/2008 (A/H5N2) segment 6 (NA)	2026.9	0.000000e+00	1156/1185 (97%)
EPI618077	A/mallard/Sweden/60065/2007 (A/H0) segment 6 (NA)	2026.9	0.000000e+00	1157/1186 (97%)
EPI514009	A/mallard/Sweden/68551/2007 (A/H4N2) segment 6 (NA)	2026.9	0.000000e+00	1157/1186 (97%)
EPI514000	A/mallard/Sweden/68940/2007 (A/H4N2) segment 6 (NA)	2026.9	0.000000e+00	1157/1186 (97%)
EPI513964	A/mallard/Sweden/68677/2007 (A/H0) segment 6 (NA)	2026.9	0.000000e+00	1157/1186 (97%)
EPI513926	A/mallard/Sweden/69580/2007 (A/H0) segment 6 (NA)	2026.9	0.000000e+00	1157/1186 (97%)
EPI377602	A/mallard/Sweden/68597/2007 (A/H2N2) segment 6 (NA)	2026.9	0.000000e+00	1157/1186 (97%)
EPI377594	A/mallard/Sweden/68735/2007 (A/H2N2) segment 6 (NA)	2026.9	0.000000e+00	1157/1186 (97%)
EPI182379	A/spotbill duck/Xuyi/6/2005 (A/H11N2) segment 6 (NA)	2026.9	0.000000e+00	1145/1169 (97%)
EPI417484	A/duck/Guangxi/GXd-2/2010 (A/H6N2) segment 6 (NA)	2025.0	0.000000e+00	1154/1183 (97%)
EPI890135	A/greater white-fronted goose/Netherlands/1/2006 (A/H6N2) segment 6 (NA)	2023.2	0.000000e+00	1155/1185 (97%)
EPI576632	A/Taiwan/DV413/2006 (A/H5N2) segment 6 (NA)	2023.2	0.000000e+00	1155/1185 (97%)
EPI514047	A/mallard/Sweden/68504/2007 (A/H4N2) segment 6 (NA)	2023.2	0.000000e+00	1155/1185 (97%)
EPI181648	A/duck/Tsukuba/9/2005 (A/H5N2) segment 6 (NA)	2023.2	0.000000e+00	1143/1167 (97%)
EPI890264	A/greater white-fronted goose/Netherlands/6/2008 (A/H5N2) segment 6 (NA)	2021.4	0.000000e+00	1155/1185 (97%)
EPI839738	A/duck/France/150233/2015 (A/H5N2) segment 6 (NA)	2021.4	0.000000e+00	1144/1169 (97%)
EPI600780	A/migratory duck/Jiangxi/10857/2005 (A/H10N2) segment 6 (NA)	2021.4	0.000000e+00	1144/1169 (97%)
EPI586236	A/muskrat/Russia/63/2014 (A/H2N2) segment 6 (NA)	2021.4	0.000000e+00	1155/1185 (97%)
EPI1006905	A/chicken/Korea/C54/2009 (A/H9N2) segment 6 (NA)	2019.5	0.000000e+00	1153/1183 (97%)
EPI1006512	A/chicken/Guangxi/015C10/2009 (A/H3N2) segment 6 (NA)	2019.5	0.000000e+00	1153/1183 (97%)
EPI576639	A/Taiwan/DV518/2006 (A/H5N2) segment 6 (NA)	2017.7	0.000000e+00	1154/1185 (97%)
EPI574273	A/mule duck/Bulgaria/175/2009 (A/H0) segment 6 (NA)	2017.7	0.000000e+00	1144/1170 (97%)
EPI574265	A/mule duck/Bulgaria/174/2009 (A/H6N2) segment 6 (NA)	2017.7	0.000000e+00	1144/1170 (97%)
EPI225321	A/northern pintail/Akita/714/2006 (A/H5N2) segment 6 (NA)	2017.7	0.000000e+00	1154/1185 (97%)
EPI618548	A/mallard/Sweden/58705/2006 (A/H5N2) segment 6 (NA)	2015.8	0.000000e+00	1154/1185 (97%)
EPI600911	A/migratory duck/Jiangxi/10861/2005 (A/H10N2) segment 6 (NA)	2015.8	0.000000e+00	1143/1169 (97%)
EPI514178	A/mallard/Sweden/58463/2006 (A/H0) segment 6 (NA)	2015.8	0.000000e+00	1154/1185 (97%)
EPI268167	A/duck/Guangxi/141/2005 (A/H6N2) segment 6 (NA)	2015.8	0.000000e+00	1143/1169 (97%)
EPI1098967	A/duck/Bangladesh/31019/2016 (A/H3N2) segment 6 (NA)	2012.1	0.000000e+00	1153/1185 (97%)
EPI574226	A/mule duck/Bulgaria/173/2009 (A/H6N2) segment 6 (NA)	2012.1	0.000000e+00	1143/1170 (97%)
EPI463328	A/mallard/Sweden/99853/2009 (A/H11N2) segment 6 (NA)	2012.1	0.000000e+00	1154/1186 (97%)
EPI438283	A/duck/Vietnam/LBM300/2012 (A/H10N2) segment 6 (NA)	2012.1	0.000000e+00	1153/1185 (97%)
EPI284652	A/duck/Hunan/8-19/2009 (A/H4N2) segment 6 (NA)	2012.1	0.000000e+00	1153/1185 (97%)
EPI889991	A/mallard duck/Netherlands/3/2008 (A/H6N2) segment 6 (NA)	2010.3	0.000000e+00	1153/1185 (97%)
EPI514228	A/mallard/Sweden/52593/2006 (A/H0) segment 6 (NA)	2010.3	0.000000e+00	1153/1185 (97%)
EPI514154	A/mallard/Sweden/58359/2006 (A/H0) segment 6 (NA)	2010.3	0.000000e+00	1153/1185 (97%)
EPI377625	A/mallard/Netherlands/14/2007 (A/H2N2) segment 6 (NA)	2010.3	0.000000e+00	1153/1185 (97%)
EPI363521	A/duck/Guizhou/1084/2006 (A/H6N2) segment 6 (NA)	2010.3	0.000000e+00	1142/1169 (97%)
EPI268188	A/mallard/Jiangxi/8264/2004 (A/H6N2) segment 6 (NA)	2010.3	0.000000e+00	1142/1169 (97%)
EPI262551	A/aquatic bird/Korea/w96/2005 (A/H5N2) segment 6 (NA)	2010.3	0.000000e+00	1143/1170 (97%)
EPI181947	A/mallard/Netherlands/14/2007 (A/H2N2) segment 6 (NA)	2010.3	0.000000e+00	1153/1185 (97%)
EPI1006881	A/chicken/Korea/C41/2009 (A/H9N2) segment 6 (NA)	2008.4	0.000000e+00	1150/1183 (97%)
EPI816849	A/turkey/Poland/09/2014 (A/H9N2) segment 6 (NA)	2008.4	0.000000e+00	1266/1355 (93%)
EPI585518	A/turkey/England/13538/2013 (A/H9N2) segment 6 (NA)	2008.4	0.000000e+00	1267/1355 (93%)
EPI585515	A/turkey/England/13437/2013 (A/H9N2) segment 6 (NA)	2008.4	0.000000e+00	1267/1355 (93%)
EPI463340	A/mallard/Sweden/99889/2009 (A/H11N2) segment 6 (NA)	2008.4	0.000000e+00	1150/1181 (97%)
EPI463327	A/mallard/Sweden/99852/2009 (A/H11N2) segment 6 (NA)	2008.4	0.000000e+00	1150/1181 (97%)
EPI463323	A/mallard/Sweden/99846/2009 (A/H11N2) segment 6 (NA)	2008.4	0.000000e+00	1150/1181 (97%)
EPI463312	A/mallard/Sweden/99820/2009 (A/H11N2) segment 6 (NA)	2008.4	0.000000e+00	1150/1181 (97%)
EPI457889	A/chicken/Guangxi/GXc-1/2011 (A/H1N2) segment 6 (NA)	2008.4	0.000000e+00	1151/1183 (97%)
EPI397607	A/wild goose/Germany-BB/R2329/2008 (A/H6N2) segment 6 (NA)	2008.4	0.000000e+00	1149/1180 (97%)
EPI1006897	A/chicken/Korea/C51/2009 (A/H9N2) segment 6 (NA)	2006.6	0.000000e+00	1150/1182 (97%)
EPI463349	A/mallard/Sweden/99985/2009 (A/H6N2) segment 6 (NA)	2006.6	0.000000e+00	1153/1186 (97%)
EPI463348	A/mallard/Sweden/99983/2009 (A/H6N2) segment 6 (NA)	2006.6	0.000000e+00	1153/1186 (97%)
EPI463347	A/mallard/Sweden/99966/2009 (A/H6N2) segment 6 (NA)	2006.6	0.000000e+00	1153/1186 (97%)
EPI463346	A/mallard/Sweden/99961/2009 (A/H6N2) segment 6 (NA)	2006.6	0.000000e+00	1153/1186 (97%)
EPI463345	A/mallard/Sweden/99957/2009 (A/H6N2) segment 6 (NA)	2006.6	0.000000e+00	1153/1186 (97%)
EPI463344	A/mallard/Sweden/99939/2009 (A/H11N2) segment 6 (NA)	2006.6	0.000000e+00	1153/1186 (97%)

niman · February 16, 2018

Descriptions

Segment-ID	Name	Score	E-Value	Identity
EPI1170214	A/chicken/Kostroma/1721/2017 (A/H5N2) segment 7 (MP)	1814.5	0.000000e+00	982/982 (100%)
EPI1170200	A/chicken/Kostroma/1720/2017 (A/H5N2) segment 7 (MP)	1814.5	0.000000e+00	982/982 (100%)
EPI1170192	A/chicken/Kostroma/1719/2017 (A/H5N2) segment 7 (MP)	1814.5	0.000000e+00	982/982 (100%)
EPI1170181	A/chicken/Kostroma/1717/2017 (A/H5N2) segment 7 (MP)	1814.5	0.000000e+00	982/982 (100%)
EPI1158111	A/chicken/Kostroma/1718/2017 (A/H5N2) segment 7 (MP)	1814.5	0.000000e+00	982/982 (100%)
EPI1010490	A/green-winged teal/Egypt/871/2016 (A/H5N8) segment 7 (MP)	1797.9	0.000000e+00	979/982 (99%)
EPI1006710	A/common teal/Korea/W555/2017 (A/H5N8) segment 7 (MP)	1797.9	0.000000e+00	979/982 (99%)
EPI1006709	A/common teal/Korea/W550/2016 (A/H5N8) segment 7 (MP)	1797.9	0.000000e+00	979/982 (99%)
EPI1006708	A/common teal/Korea/W549/2016 (A/H5N8) segment 7 (MP)	1797.9	0.000000e+00	979/982 (99%)
EPI1006707	A/common teal/Korea/W548/2016 (A/H5N8) segment 7 (MP)	1797.9	0.000000e+00	979/982 (99%)
EPI1006706	A/common teal/Korea/W547/2016 (A/H5N8) segment 7 (MP)	1797.9	0.000000e+00	979/982 (99%)
EPI952800	A/mallard duck/Korea/WA137/2017 (A/H5N8) segment 7 (MP)	1797.9	0.000000e+00	979/982 (99%)
EPI926616	A/domestic duck/Siberia/103/2016 (A/H5N8) segment 7 (MP)	1797.9	0.000000e+00	979/982 (99%)
EPI926608	A/domestic duck/Siberia/50K/2016 (A/H5N8) segment 7 (MP)	1797.9	0.000000e+00	979/982 (99%)
EPI925951	A/gadwall/Chany/97/2016 (A/H5N8) segment 7 (MP)	1797.9	0.000000e+00	979/982 (99%)
EPI1010493	A/green-winged teal/Egypt/877/2016 (A/H5N8) segment 7 (MP)	1792.4	0.000000e+00	978/982 (99%)
EPI954562	A/turkey/Italy/17VIR538-1/2017 (A/H5N8) segment 7 (MP)	1792.4	0.000000e+00	978/982 (99%)
EPI952642	A/chicken/Korea/H903/2017 (A/H5N8) segment 7 (MP)	1792.4	0.000000e+00	978/982 (99%)
EPI858847	A/painted stork/India/10CA03/2016 (A/H5N8) segment 7 (MP)	1792.4	0.000000e+00	978/982 (99%)
EPI1034977	A/grey heron/W779/2017 (A/H5N8) segment 7 (MP)	1786.8	0.000000e+00	977/982 (99%)
EPI1159812	A/Anser cygnoides/Hubei/FW44/2016 (A/H5N8) segment 7 (MP)	1764.7	0.000000e+00	973/982 (99%)
EPI962069	A/Mute_swan/Hungary/5879/2017 (A/H5N5) segment 7 (MP)	1764.7	0.000000e+00	973/982 (99%)
EPI954804	A/wigeon/Italy/16VIR9616-3/2016 (A/H5N5) segment 7 (MP)	1764.7	0.000000e+00	973/982 (99%)
EPI954618	A/gadwall/Italy/17VIR133-2/2017 (A/H5N5) segment 7 (MP)	1764.7	0.000000e+00	973/982 (99%)
EPI858840	A/duck/India/10CA01/2016 (A/H5N8) segment 7 (MP)	1764.7	0.000000e+00	973/982 (99%)
EPI931201	A/mute swan/Czech Republic/2031-17/2017 (H5N5) (A/H5N5) segment 7 (MP)	1762.8	0.000000e+00	972/981 (99%)
EPI1117264	A/M_Swan/NL-Groningen/16015826-001/2016 (A/H5N5) segment 7 (MP)	1759.1	0.000000e+00	972/982 (98%)
EPI961482	A/environment/Kamchatka/18/2016 (A/H5N5) segment 7 (MP)	1759.1	0.000000e+00	972/982 (98%)
EPI899695	A/turkey/Germany-SH/R425/2017 (A/H5N5) segment 7 (MP)	1759.1	0.000000e+00	970/979 (99%)
EPI990773	A/greylag goose/Germany-NIAR11353-L02142/2016 (A/H5N5) segment 7 (MP)	1757.3	0.000000e+00	971/981 (98%)
EPI916522	A/mute swan/Croatia/42/2017 (A/H5N5) segment 7 (MP)	1757.3	0.000000e+00	969/978 (99%)
EPI873622	A/mute swan/Croatia/102/2016 (A/H5N5) segment 7 (MP)	1757.3	0.000000e+00	969/978 (99%)
EPI895487	A/barnacle goose/Germany-SH/R11505/2016 (A/H5N5) segment 7 (MP)	1755.4	0.000000e+00	969/979 (98%)
EPI1002886	A/black swan/Germany-BW/R1364/2017 (A/H5N8) segment 7 (MP)	1753.6	0.000000e+00	971/982 (98%)
EPI954840	A/Mallard/Hungary/5821/2017 (A/H5N8) segment 7 (MP)	1753.6	0.000000e+00	971/982 (98%)
EPI986365	A/chicken/Croatia/104/2017 (A/H5N5) segment 7 (MP)	1751.7	0.000000e+00	968/978 (98%)
EPI995483	A/cormorant/Germany-SH/R896/2017 (A/H5N5) segment 7 (MP)	1749.9	0.000000e+00	968/979 (98%)
EPI1159828	A/Cygnus atratus/Hubei/HF-1/2016 (A/H5N8) segment 7 (MP)	1748.1	0.000000e+00	971/983 (98%)
EPI1032553	A/Mulard_duck/Hungary/59163/2016 (A/H5N8) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI1032527	A/Mulard_duck/Hungary/62902/2016 (A/H5N8) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI1032519	A/Mulard_duck/Hungary/60369/2016 (A/H5N8) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI1032511	A/Goose/Hungary/59763/2016 (A/H5N8) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI1032503	A/Goose/Hungary/17985/2017 (A/H5N8) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI1032495	A/Goose/Hungary/17580/2017 (A/H5N8) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI1032487	A/Goose/Hungary/17051/2017 (A/H5N8) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI1032479	A/Goose/Hungary/15729/2017 (A/H5N8) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI1019529	A/Eur_Wig/NL-Enumatil-Groningen/16015704-001/2016 (A/H5N8) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI962050	A/Duck/Hungary/55764/2016 (A/H5N8) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI962039	A/Duck/Hungary/54738/2016 (A/H5N8) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI961503	A/turkey/Italy/17VIR1574-1/2017 (A/H5N8) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI961452	A/gadwall/Kurgan/2442/2016 (A/H5N8) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI959534	A/Mute swan/Hungary/6276/2017 (A/H5N8) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI959427	A/chicken/Poland/79A/2016 (A/H5N8) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI956123	A/Goose/Hungary/59712/2016 (A/H5N8) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI954832	A/Mute swan/Hungary/3137/2017 (A/H5N8) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI954730	A/Mute swan/Hungary/3513/2017 (A/H5N8) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI954722	A/Mute swan/Hungary/3139/2017 (A/H5N8) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI954714	A/Mute swan/Hungary/2825/2017 (A/H5N8) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI954682	A/Mute swan/Hungary/1955/2017 (A/H5N8) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI954650	A/Duck/Hungary/984/2017 (A/H5N8) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI954634	A/Harris Hawk/Hungary/120/2017 (A/H5N8) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI954594	A/turkey/Italy/17VIR1338-3/2017 (A/H5N8) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI953518	A/mallard/Hungary/57857/2016 (A/H5N8) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI909463	A/chicken/Kalmykia/2643/2016 (A/H5N8) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI909455	A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI866980	A/duck/Hungary/60441/2016 (A/H5N8) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI860521	A/goose/Hungary/55128/2016 (A/H5N8) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI860516	A/Mulard_duck/Hungary/54494/2016 (A/H5N8) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI859202	A/mute_swan/Hungary/51049/2016 (A/H5N8) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI826909	A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI823751	A/wild duck/Tyva/35/2016 (A/H5N8) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI823463	A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI774437	A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI774364	A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI774297	A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI774221	A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI773760	A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 7 (MP)	1748.1	0.000000e+00	970/982 (98%)
EPI1085345	A/goose/Czech Republic/136-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP)	1746.2	0.000000e+00	969/981 (98%)
EPI969267	A/chicken/Czech Republic/2644-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP)	1746.2	0.000000e+00	969/981 (98%)
EPI931199	A/chicken/Czech Republic/1896-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP)	1746.2	0.000000e+00	969/981 (98%)
EPI931112	A/mute swan/Czech Republic/879-17/2017 (H5N8) (A/H5N8) segment 7 (MP)	1746.2	0.000000e+00	969/981 (98%)
EPI930844	A/chicken/Czech Republic/55-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP)	1746.2	0.000000e+00	969/981 (98%)
EPI930839	A/mute swan/Czech Republic/54-17_2/2017 (H5N8) (A/H5N8) segment 7 (MP)	1746.2	0.000000e+00	969/981 (98%)
EPI1126346	A/mallard/Czech Republic/136-17_2/2017 (H5N8) (A/H5N8) segment 7 (MP)	1742.5	0.000000e+00	968/981 (98%)
EPI1117256	A/T_Dk/NL-Werkendam/16014159-001/2016 (A/H5N5) segment 7 (MP)	1742.5	0.000000e+00	969/982 (98%)
EPI1087641	A/chicken/Czech Republic/988-17/2017 (H5N8) (A/H5N8) segment 7 (MP)	1742.5	0.000000e+00	968/981 (98%)
EPI1032471	A/Goose/Hungary/17261/2017 (A/H5N8) segment 7 (MP)	1742.5	0.000000e+00	969/982 (98%)
EPI1019841	A/T_Dk/NL-Zeewolde/16013976-005/2016 (A/H5N8) segment 7 (MP)	1742.5	0.000000e+00	969/982 (98%)
EPI1019833	A/T_Dk/NL-Zeewolde/16013976-004-006/2016 (A/H5N8) segment 7 (MP)	1742.5	0.000000e+00	969/982 (98%)
EPI1019801	A/T_Dk/NL-Werkendam/16014159-003/2016 (A/H5N8) segment 7 (MP)	1742.5	0.000000e+00	969/982 (98%)
EPI1019793	A/T_Dk/NL-Werkendam/16014159-002/2016 (A/H5N8) segment 7 (MP)	1742.5	0.000000e+00	969/982 (98%)
EPI1019785	A/T_Dk/NL-Rotterdam/16014155-001/2016 (A/H5N8) segment 7 (MP)	1742.5	0.000000e+00	969/982 (98%)
EPI1019777	A/T_Dk/NL-Roggebotsluis/16014462-015/2016 (A/H5N8) segment 7 (MP)	1742.5	0.000000e+00	969/982 (98%)
EPI1019745	A/P_falcon/NL-Vrouwenpolder (Zeeland)/16015510-001/2016 (A/H5N8) segment 7 (MP)	1742.5	0.000000e+00	969/982 (98%)
EPI1019729	A/Mal/NL-IJsselmuiden/16015448-002/2016 (A/H5N8) segment 7 (MP)	1742.5	0.000000e+00	969/982 (98%)
EPI1019721	A/Magpie/NL-Volendam/16014331-002/2016 (A/H5N8) segment 7 (MP)	1742.5	0.000000e+00	969/982 (98%)
EPI1019705	A/L-bl-ba-gull/NL-Sovon/16014324-014/2016 (A/H5N8) segment 7 (MP)	1742.5	0.000000e+00	969/982 (98%)
EPI1019673	A/Grey_Go/NL-Groot-Ammers/16015901-012/2016 (A/H5N8) segment 7 (MP)	1742.5	0.000000e+00	969/982 (98%)
EPI1019657	A/Go/NL-Roggebotsluis/16014462-010/2016 (A/H5N8) segment 7 (MP)	1742.5	0.000000e+00	969/982 (98%)
EPI1019641	A/Eur_Wig/NL-Zwolle/16015820-002/2016 (A/H5N8) segment 7 (MP)	1742.5	0.000000e+00	969/982 (98%)

niman · February 16, 2018

Descriptions

Segment-ID	Name	Score	E-Value	Identity
EPI1170213	A/chicken/Kostroma/1721/2017 (A/H5N2) segment 1 (PB2)	4211.5	0.000000e+00	2280/2280 (100%)
EPI1170206	A/chicken/Kostroma/1720/2017 (A/H5N2) segment 1 (PB2)	4211.5	0.000000e+00	2280/2280 (100%)
EPI1170197	A/chicken/Kostroma/1719/2017 (A/H5N2) segment 1 (PB2)	4211.5	0.000000e+00	2280/2280 (100%)
EPI1170187	A/chicken/Kostroma/1717/2017 (A/H5N2) segment 1 (PB2)	4211.5	0.000000e+00	2280/2280 (100%)
EPI1158105	A/chicken/Kostroma/1718/2017 (A/H5N2) segment 1 (PB2)	4205.9	0.000000e+00	2279/2280 (99%)
EPI617974	A/common Teal/Republic of Georgia/1/2011 (A/H3N8) segment 1 (PB2)	4056.4	0.000000e+00	2252/2280 (98%)
EPI617882	A/mallard/Republic of Georgia/13/2011 (A/H6N2) segment 1 (PB2)	4023.1	0.000000e+00	2246/2280 (98%)
EPI1036183	A/duck/Moscow/4652/2011 (A/H4N6) segment 1 (PB2)	3991.7	0.000000e+00	2240/2280 (98%)
EPI823778	A/environment/Kamchatka/24/2016 (A/H13N8) segment 1 (PB2)	3989.9	0.000000e+00	2240/2280 (98%)
EPI823762	A/environment/Kamchatka/23/2016 (A/H13N8) segment 1 (PB2)	3980.7	0.000000e+00	2238/2280 (98%)
EPI341793	A/mallard/France/090360/2009 (A/H9N2) segment 1 (PB2)	3962.2	0.000000e+00	2235/2280 (98%)
EPI961485	A/environment/Kamchatka/117/2016 (A/H13N8) segment 1 (PB2)	3956.6	0.000000e+00	2234/2280 (97%)
EPI890883	A/greater white-fronted goose/Netherlands/2/2007 (A/H6N8) segment 1 (PB2)	3940.0	0.000000e+00	2231/2280 (97%)
EPI1014087	A/mallard duck/Georgia/11/2011 (A/H1N1) segment 1 (PB2)	3934.5	0.000000e+00	2230/2280 (97%)
EPI889820	A/mallard duck/Netherlands/15/2011 (A/H6N8) segment 1 (PB2)	3934.5	0.000000e+00	2230/2280 (97%)
EPI889410	A/Eurasian teal/Netherlands/1/2011 (A/H3N8) segment 1 (PB2)	3934.5	0.000000e+00	2230/2280 (97%)
EPI889594	A/mallard duck/Netherlands/20/2011 (A/H6N8) segment 1 (PB2)	3923.4	0.000000e+00	2228/2280 (97%)
EPI1133605	A/shelduck/Yasnopolyanske/4-08-02/2011 (A/H1N1) segment 1 (PB2)	3912.3	0.000000e+00	2226/2280 (97%)
EPI809271	A/pigeon/Egypt/S10409A/2014 (A/H9N2) segment 1 (PB2)	3912.3	0.000000e+00	2227/2281 (97%)
EPI618045	A/mallard/Republic of Georgia/12/2011 (A/H10N4) segment 1 (PB2)	3912.3	0.000000e+00	2226/2280 (97%)
EPI1010712	A/white-fronted goose/Netherlands/5/2011 (A/H6N8) segment 1 (PB2)	3901.2	0.000000e+00	2224/2280 (97%)
EPI890266	A/greater white-fronted goose/Netherlands/6/2011 (A/H6N8) segment 1 (PB2)	3901.2	0.000000e+00	2224/2280 (97%)
EPI1013538	A/mallard duck/Netherlands/18/2012 (A/H4N2) segment 1 (PB2)	3890.2	0.000000e+00	2223/2281 (97%)
EPI1011210	A/mallard duck/Netherlands/16/2012 (A/H3N2) segment 1 (PB2)	3890.2	0.000000e+00	2222/2280 (97%)
EPI174667	A/chicken/Hubei/2856/2007 (A/H5N1) segment 1 (PB2)	3890.2	0.000000e+00	2222/2280 (97%)
EPI174665	A/duck/Hunan/1964/2007 (A/H5N1) segment 1 (PB2)	3890.2	0.000000e+00	2223/2281 (97%)
EPI174670	A/chicken/Hunan/3157/2006 (A/H5N1) segment 1 (PB2)	3884.6	0.000000e+00	2221/2280 (97%)
EPI174657	A/duck/Hunan/689/2006 (A/H5N1) segment 1 (PB2)	3884.6	0.000000e+00	2221/2280 (97%)
EPI891105	A/mallard duck/Netherlands/23/2012 (A/H11N9) segment 1 (PB2)	3879.1	0.000000e+00	2220/2280 (97%)
EPI677988	A/chicken/Italy/13VIR4527-12/2013 (A/H7N7) segment 1 (PB2)	3879.1	0.000000e+00	2220/2280 (97%)
EPI560338	A/Italy/3/2013 (A/H7N7) segment 1 (PB2)	3879.1	0.000000e+00	2220/2280 (97%)
EPI221999	A/environment/Hunan/1-8/2007 (A/H5N1) segment 1 (PB2)	3879.1	0.000000e+00	2220/2280 (97%)
EPI174669	A/chicken/Hubei/3002/2007 (A/H5N1) segment 1 (PB2)	3879.1	0.000000e+00	2220/2280 (97%)
EPI174668	A/duck/Hubei/2911/2007 (A/H5N1) segment 1 (PB2)	3879.1	0.000000e+00	2220/2280 (97%)
EPI678028	A/chicken/Italy/13VIR4541-7/2013 (A/H7N7) segment 1 (PB2)	3875.4	0.000000e+00	2219/2280 (97%)
EPI678004	A/chicken/Italy/13VIR4541-32/2013 (A/H7N7) segment 1 (PB2)	3875.4	0.000000e+00	2219/2280 (97%)
EPI677996	A/chicken/Italy/13VIR4527-11/2013 (A/H7N7) segment 1 (PB2)	3875.4	0.000000e+00	2219/2280 (97%)
EPI889776	A/mallard duck/Netherlands/32/2011 (A/H5N2) segment 1 (PB2)	3873.5	0.000000e+00	2219/2280 (97%)
EPI816828	A/turkey/Poland/14/2013 (A/H9N2) segment 1 (PB2)	3873.5	0.000000e+00	2220/2281 (97%)
EPI809383	A/pigeon/Egypt/S10408B/2014 (A/H9N2) segment 1 (PB2)	3873.5	0.000000e+00	2220/2281 (97%)
EPI678076	A/chicken/Italy/13VIR5051-3/2013 (A/H7N7) segment 1 (PB2)	3873.5	0.000000e+00	2219/2280 (97%)
EPI678060	A/chicken/Italy/13VIR4774/2013 (A/H7N7) segment 1 (PB2)	3873.5	0.000000e+00	2219/2280 (97%)
EPI678052	A/chicken/Italy/13VIR4603-1/2013 (A/H7N7) segment 1 (PB2)	3873.5	0.000000e+00	2219/2280 (97%)
EPI678036	A/chicken/Italy/13VIR4541-8/2013 (A/H7N7) segment 1 (PB2)	3873.5	0.000000e+00	2219/2280 (97%)
EPI222147	A/lesser kestrel/Heilongjiang/194/2007 (A/H5N1) segment 1 (PB2)	3873.5	0.000000e+00	2219/2280 (97%)
EPI678012	A/chicken/Italy/13VIR4541-33/2013 (A/H7N7) segment 1 (PB2)	3871.7	0.000000e+00	2218/2280 (97%)
EPI678092	A/turkey/Italy/13VIR4678-1/2013 (A/H7N7) segment 1 (PB2)	3869.9	0.000000e+00	2218/2280 (97%)
EPI678068	A/chicken/Italy/13VIR5051-1/2013 (A/H7N7) segment 1 (PB2)	3869.9	0.000000e+00	2218/2280 (97%)
EPI678084	A/chicken/Italy/13VIR5091/2013 (A/H7N7) segment 1 (PB2)	3868.0	0.000000e+00	2218/2280 (97%)
EPI678044	A/chicken/Italy/13VIR4541-9/2013 (A/H7N7) segment 1 (PB2)	3868.0	0.000000e+00	2218/2280 (97%)
EPI678020	A/chicken/Italy/13VIR4541-34/2013 (A/H7N7) segment 1 (PB2)	3868.0	0.000000e+00	2218/2280 (97%)
EPI1013811	A/mallard duck/Netherlands/10/2013 (A/H4N6) segment 1 (PB2)	3862.5	0.000000e+00	2218/2281 (97%)
EPI262682	A/aquatic bird/Korea/w120/2006 (A/H5N2) segment 1 (PB2)	3862.5	0.000000e+00	2217/2280 (97%)
EPI262680	A/aquatic bird/Korea/w113/2006 (A/H5N2) segment 1 (PB2)	3862.5	0.000000e+00	2217/2280 (97%)
EPI173585	A/swine/Korea/C12/2008 (A/H5N2) segment 1 (PB2)	3862.5	0.000000e+00	2217/2280 (97%)
EPI773762	A/chicken/Netherlands/16007311-037041/2016 (A/H7N9) segment 1 (PB2)	3856.9	0.000000e+00	2216/2280 (97%)
EPI174662	A/duck/Henan/1652/2006 (A/H5N1) segment 1 (PB2)	3856.9	0.000000e+00	2216/2280 (97%)
EPI174660	A/duck/Henan/1647/2006 (A/H5N1) segment 1 (PB2)	3856.9	0.000000e+00	2217/2281 (97%)
EPI262681	A/aquatic bird/Korea/w114/2006 (A/H5N2) segment 1 (PB2)	3851.4	0.000000e+00	2215/2280 (97%)
EPI816836	A/turkey/Poland/08/2014 (A/H9N2) segment 1 (PB2)	3845.8	0.000000e+00	2214/2280 (97%)
EPI774511	A/chicken/Netherlands/15007212/15 (A/H10N7) segment 1 (PB2)	3845.8	0.000000e+00	2214/2280 (97%)
EPI262683	A/aquatic bird/Korea/w121/2006 (A/H5N2) segment 1 (PB2)	3845.8	0.000000e+00	2214/2280 (97%)
EPI816844	A/turkey/Poland/09/2014 (A/H9N2) segment 1 (PB2)	3842.2	0.000000e+00	2213/2280 (97%)
EPI1133958	A/duck/Mongolia/27/2011 (A/H3N8) segment 1 (PB2)	3840.3	0.000000e+00	2213/2280 (97%)
EPI167950	A/long-tailed shrike/Hong Kong/2762/2007 (A/H5N1) segment 1 (PB2)	3836.6	0.000000e+00	2197/2257 (97%)
EPI718523	A/Anas platyrhynchos/Belgium/17330cls42/2013 (A/H5N2) segment 1 (PB2)	3834.8	0.000000e+00	2213/2281 (97%)
EPI222581	A/scaly-breasted munia/Hong Kong/45/2007 (A/H5N1) segment 1 (PB2)	3834.8	0.000000e+00	2202/2265 (97%)
EPI1086370	A/Chicken/Egypt/374V/2016 (A/H9N2) segment 1 (PB2)	3823.7	0.000000e+00	2211/2281 (96%)
EPI1013684	A/mallard duck/Netherlands/40/2011 (A/H7N1) segment 1 (PB2)	3823.7	0.000000e+00	2211/2281 (96%)
EPI1013496	A/mallard duck/Netherlands/48/2011 (A/H7N1) segment 1 (PB2)	3823.7	0.000000e+00	2211/2281 (96%)
EPI889596	A/mallard duck/Netherlands/8/2012 (A/H1N1) segment 1 (PB2)	3823.7	0.000000e+00	2210/2280 (96%)
EPI220527	A/environment/Hunan/6-69/2008 (A/H5N1) segment 1 (PB2)	3823.7	0.000000e+00	2211/2281 (96%)
EPI1011215	A/mallard duck/Netherlands/45/2011 (A/H8N1) segment 1 (PB2)	3818.1	0.000000e+00	2210/2281 (96%)
EPI890747	A/mallard duck/Netherlands/44/2011 (A/H7N1) segment 1 (PB2)	3818.1	0.000000e+00	2210/2281 (96%)
EPI890191	A/mallard duck/Netherlands/30/2014 (A/H4N6) segment 1 (PB2)	3818.1	0.000000e+00	2209/2280 (96%)
EPI889269	A/mallard duck/Netherlands/31/2012 (A/H7N1) segment 1 (PB2)	3818.1	0.000000e+00	2210/2281 (96%)
EPI889248	A/mallard duck/Netherlands/43/2011 (A/H7N1) segment 1 (PB2)	3818.1	0.000000e+00	2210/2281 (96%)
EPI687184	A/chicken/Scotland/532/2016 (A/H5N1) segment 1 (PB2)	3807.1	0.000000e+00	2200/2270 (96%)
EPI1087898	A/ Quail /Egypt/1253V/2016 (A/H9N2) segment 1 (PB2)	3801.5	0.000000e+00	2206/2280 (96%)
EPI839725	A/chicken/France/150169a/2015 (A/H5N1) segment 1 (PB2)	3796.0	0.000000e+00	2205/2280 (96%)
EPI1168802	A/chicken/Egypt/ABD5/2015 (A/H9N2) segment 1 (PB2)	3784.9	0.000000e+00	2204/2281 (96%)
EPI1168801	A/chicken/Egypt/ABD4/2015 (A/H9N2) segment 1 (PB2)	3784.9	0.000000e+00	2204/2281 (96%)
EPI1168800	A/chicken/Egypt/ABD3/2015 (A/H9N2) segment 1 (PB2)	3784.9	0.000000e+00	2204/2281 (96%)
EPI839733	A/duck/France/150233/2015 (A/H5N2) segment 1 (PB2)	3784.9	0.000000e+00	2203/2280 (96%)
EPI1168798	A/chicken/Egypt/ABD1/2015 (A/H9N2) segment 1 (PB2)	3779.4	0.000000e+00	2203/2281 (96%)
EPI167855	A/crested goshawk/Hong Kong/458/2007 (A/H5N1) segment 1 (PB2)	3779.4	0.000000e+00	2166/2226 (97%)
EPI1014358	A/mallard duck/Netherlands/18/2014 (A/H1N1) segment 1 (PB2)	3768.3	0.000000e+00	2201/2281 (96%)
EPI1006524	A/duck/Guangxi/015D2/2009 (A/H3N2) segment 1 (PB2)	3762.7	0.000000e+00	2199/2280 (96%)
EPI1168799	A/chicken/Egypt/ABD2/2015 (A/H9N2) segment 1 (PB2)	3757.2	0.000000e+00	2200/2282 (96%)
EPI619190	A/mallard/Sweden/2990/2003 (A/H8N4) segment 1 (PB2)	3757.2	0.000000e+00	2198/2280 (96%)
EPI619284	A/mallard/Sweden/2834/2003 (A/H8N4) segment 1 (PB2)	3751.7	0.000000e+00	2197/2280 (96%)
EPI401812	A/green-winged teal/Xianghai/430/2011 (A/H5N2) segment 1 (PB2)	3751.7	0.000000e+00	2197/2280 (96%)
EPI251798	A/mallard/Sweden/8/2003 (A/H8N4) segment 1 (PB2)	3751.7	0.000000e+00	2197/2280 (96%)
EPI484292	A/chicken/Italy/13VIR4527-11/2013 (A/H7N7) segment 1 (PB2)	3748.0	0.000000e+00	2152/2214 (97%)
EPI839741	A/duck/France/150236/2015 (A/H5N9) segment 1 (PB2)	3746.1	0.000000e+00	2197/2281 (96%)
EPI316548	A/spot-billed duck/Korea/KNU SYG06/2006 (A/H5N3) segment 1 (PB2)	3746.1	0.000000e+00	2196/2280 (96%)
EPI514918	A/mallard/Sweden/274/2002 (A/H4N2) segment 1 (PB2)	3740.6	0.000000e+00	2195/2280 (96%)
EPI99874	A/duck/Denmark/65047/04 (A/H5N2) segment 1 (PB2)	3740.6	0.000000e+00	2195/2280 (96%)
EPI940605	A/guinea fowl/France/150207n/2015 (A/H5N9) segment 1 (PB2)	3735.0	0.000000e+00	2196/2282 (96%)
EPI534805	A/duck/Zhejiang/D18/2013 (A/H3N3) segment 1 (PB2)	3735.0	0.000000e+00	2194/2280 (96%

Edited February 16, 2018 by niman

niman · February 16, 2018

Descriptions

Segment-ID	Name	Score	E-Value	Identity
EPI1170212	A/chicken/Kostroma/1721/2017 (A/H5N2) segment 2 (PB1)	4200.4	0.000000e+00	2274/2274 (100%)
EPI1170205	A/chicken/Kostroma/1720/2017 (A/H5N2) segment 2 (PB1)	4200.4	0.000000e+00	2274/2274 (100%)
EPI1170196	A/chicken/Kostroma/1719/2017 (A/H5N2) segment 2 (PB1)	4200.4	0.000000e+00	2274/2274 (100%)
EPI1170186	A/chicken/Kostroma/1717/2017 (A/H5N2) segment 2 (PB1)	4200.4	0.000000e+00	2274/2274 (100%)
EPI1158106	A/chicken/Kostroma/1718/2017 (A/H5N2) segment 2 (PB1)	4200.4	0.000000e+00	2274/2274 (100%)
EPI884245	A/shoveler/Chany/82K/2014 (A/H3N8) segment 2 (PB1)	4073.0	0.000000e+00	2251/2274 (98%)
EPI940659	A/duck/India/11CL01/2014 (A/H6N2) segment 2 (PB1)	4045.3	0.000000e+00	2246/2274 (98%)
EPI1057754	A/duck/Kagoshima/KU57/2014 (A/H11N9) segment 2 (PB1)	4034.2	0.000000e+00	2244/2274 (98%)
EPI1057746	A/crane/Kagoshima/KU-T40/2015 (A/H11N9) segment 2 (PB1)	4028.7	0.000000e+00	2243/2274 (98%)
EPI837770	A/mallard/Poland/141/2015 (A/H5N1) segment 2 (PB1)	4023.1	0.000000e+00	2230/2257 (98%)
EPI704370	A/duck/Mongolia/211/2015 (A/H3N8) segment 2 (PB1)	4023.1	0.000000e+00	2242/2274 (98%)
EPI704362	A/duck/Mongolia/208/2015 (A/H3N8) segment 2 (PB1)	4023.1	0.000000e+00	2242/2274 (98%)
EPI704313	A/duck/Mongolia/167/2015 (A/H3N8) segment 2 (PB1)	4023.1	0.000000e+00	2242/2274 (98%)
EPI693704	A/duck/Mongolia/83/2015 (A/H3N8) segment 2 (PB1)	4023.1	0.000000e+00	2242/2274 (98%)
EPI693696	A/duck/Mongolia/20/2015 (A/H3N8) segment 2 (PB1)	4023.1	0.000000e+00	2242/2274 (98%)
EPI990792	A/greylag goose/Germany-NI/AR1395-L02144/2017 (A/H5N8) segment 2 (PB1)	4017.6	0.000000e+00	2242/2275 (98%)
EPI964915	A/chicken/Czech Republic/206-17_2/2017 (A/H5N8) segment 2 (PB1)	4012.0	0.000000e+00	2241/2275 (98%)
EPI954537	A/Goose/Hungary/65817/2016 (A/H5N8) segment 2 (PB1)	4012.0	0.000000e+00	2241/2275 (98%)
EPI887466	A/chicken/Czech Republic/206-17_2/2017(H5N8) (A/H5N8) segment 2 (PB1)	4012.0	0.000000e+00	2241/2275 (98%)
EPI959417	A/domestic goose/Poland/33/2016 (A/H5N8) segment 2 (PB1)	4006.5	0.000000e+00	2240/2275 (98%)
EPI922439	A/domestic duck/Germany-BB/R681ff/2017 (A/H5N8) segment 2 (PB1)	4006.5	0.000000e+00	2238/2272 (98%)
EPI540405	A/waterfowl/Bangladesh/12301/2013 (A/H6N7) segment 2 (PB1)	4002.8	0.000000e+00	2238/2274 (98%)
EPI1133591	A/mallard/Nizhnegorsk/3-06-10/2010 (A/H7N7) segment 2 (PB1)	4001.0	0.000000e+00	2238/2274 (98%)
EPI1013376	A/white-fronted goose/Netherlands/3/2010 (A/H5N2) segment 2 (PB1)	4001.0	0.000000e+00	2239/2275 (98%)
EPI990800	A/greylag goose/Germany-NI/AR703-L02138/2017 (A/H5N8) segment 2 (PB1)	4001.0	0.000000e+00	2239/2275 (98%)
EPI974522	A/mute swan/Germany-TH/R1126/2017 (A/H5N8) segment 2 (PB1)	4001.0	0.000000e+00	2239/2275 (98%)
EPI891301	A/greater white-fronted goose/Netherlands/2/2010 (A/H5N2) segment 2 (PB1)	4001.0	0.000000e+00	2239/2275 (98%)
EPI874778	A/turkey/Germany-NI/R10523/2016 (A/H5N8) segment 2 (PB1)	4001.0	0.000000e+00	2239/2275 (98%)
EPI464920	A/guinea fowl/Italy/10VIR-218-134/2010 (A/H5N2) segment 2 (PB1)	4001.0	0.000000e+00	2235/2269 (98%)
EPI973788	A/grey heron/Germany-TH/R1125/2017 (A/H5N8) segment 2 (PB1)	3995.4	0.000000e+00	2238/2275 (98%)
EPI959529	A/Mute swan/Hungary/6092/2017 (A/H5N8) segment 2 (PB1)	3995.4	0.000000e+00	2238/2275 (98%)
EPI1169138	A/chicken/Rostov-on-Don/1321/2017 (A/H5N8) segment 2 (PB1)	3989.9	0.000000e+00	2237/2275 (98%)
EPI965389	A/duck/Bangladesh/24692/2015 (A/H7N1) segment 2 (PB1)	3986.2	0.000000e+00	2235/2274 (98%)
EPI837536	A/graylag goose/Poland/74/2010 (A/H5N2) segment 2 (PB1)	3986.2	0.000000e+00	2236/2275 (98%)
EPI963326	A/duck/Bangladesh/24035/2014 (A/H10N1) segment 2 (PB1)	3984.3	0.000000e+00	2235/2274 (98%)
EPI514974	A/mallard/Sweden/80261/2008 (A/H4N9) segment 2 (PB1)	3984.3	0.000000e+00	2235/2274 (98%)
EPI560057	A/mallard/Novomychalivka/2-23-12/2010 (A/H15N7) segment 2 (PB1)	3980.7	0.000000e+00	2233/2272 (98%)
EPI965525	A/duck/Bangladesh/26980/2015 (A/H7N9) segment 2 (PB1)	3978.8	0.000000e+00	2234/2274 (98%)
EPI965357	A/duck/Bangladesh/27042/2015 (A/H7N9) segment 2 (PB1)	3978.8	0.000000e+00	2234/2274 (98%)
EPI965337	A/duck/Bangladesh/26992/2015 (A/H7N9) segment 2 (PB1)	3978.8	0.000000e+00	2234/2274 (98%)
EPI965174	A/duck/Bangladesh/24706/2015 (A/H7N1) segment 2 (PB1)	3978.8	0.000000e+00	2234/2274 (98%)
EPI1168867	A/mallard/Askania-Nova/39-15-02/2011 (A/H7N7) segment 2 (PB1)	3973.3	0.000000e+00	2233/2274 (98%)
EPI1133597	A/mallard/Novomyhalivka/10-23-12/2010 (A/H7N7) segment 2 (PB1)	3973.3	0.000000e+00	2233/2274 (98%)
EPI617954	A/Mediterranean gull/Republic of Georgia/1/2011 (A/H9N3) segment 2 (PB1)	3956.6	0.000000e+00	2230/2274 (98%)
EPI1133604	A/shelduck/Yasnopolyanske/4-08-02/2011 (A/H1N1) segment 2 (PB1)	3951.1	0.000000e+00	2229/2274 (98%)
EPI1013392	A/tufted duck/Georgia/1/2012 (A/H2N3) segment 2 (PB1)	3945.6	0.000000e+00	2228/2274 (97%)
EPI891424	A/mallard duck/Netherlands/26/2010 (A/H4N6) segment 2 (PB1)	3945.6	0.000000e+00	2228/2274 (97%)
EPI618043	A/mallard/Republic of Georgia/12/2011 (A/H10N4) segment 2 (PB1)	3945.6	0.000000e+00	2228/2274 (97%)
EPI617820	A/tufted duck/Republic of Georgia/1/2012 (A/H2N3) segment 2 (PB1)	3945.6	0.000000e+00	2228/2274 (97%)
EPI1013908	A/mallard duck/Georgia/3/2012 (A/H7N3) segment 2 (PB1)	3934.5	0.000000e+00	2226/2274 (97%)
EPI617793	A/yellow-legged gull/Republic of Georgia/1/2012 (A/H0) segment 2 (PB1)	3934.5	0.000000e+00	2226/2274 (97%)
EPI372361	A/shoveler/Egypt/14879-NAMRU3/2006 (A/H7N1) segment 2 (PB1)	3934.5	0.000000e+00	2226/2274 (97%)
EPI965363	A/duck/Bangladesh/25767/2015 (A/H6N1) segment 2 (PB1)	3923.4	0.000000e+00	2224/2274 (97%)
EPI891371	A/mallard duck/Netherlands/6/2013 (A/H3N8) segment 2 (PB1)	3923.4	0.000000e+00	2224/2274 (97%)
EPI618617	A/mallard/Sweden/133546/2011 (A/H10N4) segment 2 (PB1)	3923.4	0.000000e+00	2224/2274 (97%)
EPI891426	A/mallard duck/Netherlands/26/2011 (A/H11N9) segment 2 (PB1)	3917.9	0.000000e+00	2224/2275 (97%)
EPI617988	A/mallard/Republic of Georgia/3/2011 (A/H3N8) segment 2 (PB1)	3916.0	0.000000e+00	2222/2273 (97%)
EPI617899	A/mallard/Republic of Georgia/1/2012 (A/H1N1) segment 2 (PB1)	3912.3	0.000000e+00	2222/2274 (97%)
EPI965329	A/duck/Bangladesh/26920/2015 (A/H3N6) segment 2 (PB1)	3906.8	0.000000e+00	2221/2274 (97%)
EPI464928	A/chicken/Italy/11VIR-7548/2011 (A/H5N2) segment 2 (PB1)	3906.8	0.000000e+00	2222/2275 (97%)
EPI965346	A/duck/Bangladesh/25891/2015 (A/H4N6) segment 2 (PB1)	3901.2	0.000000e+00	2220/2274 (97%)
EPI617760	A/mallard/Republic of Georgia/14/2011 (A/H10N7) segment 2 (PB1)	3901.2	0.000000e+00	2220/2274 (97%)
EPI182047	A/common eider/Netherlands/1/2006 (A/H3N8) segment 2 (PB1)	3901.2	0.000000e+00	2220/2274 (97%)
EPI965342	A/duck/Bangladesh/26974/2015 (A/H3N6) segment 2 (PB1)	3895.7	0.000000e+00	2219/2274 (97%)
EPI965318	A/duck/Bangladesh/26948/2015 (A/H3N6) segment 2 (PB1)	3895.7	0.000000e+00	2219/2274 (97%)
EPI1010545	A/mallard duck/Sweden/139937/2012 (A/H15N5) segment 2 (PB1)	3890.2	0.000000e+00	2219/2275 (97%)
EPI891438	A/mallard duck/Netherlands/3/2015 (A/H7N7) segment 2 (PB1)	3890.2	0.000000e+00	2218/2274 (97%)
EPI891297	A/mallard duck/Netherlands/2/2015 (A/H7N7) segment 2 (PB1)	3890.2	0.000000e+00	2218/2274 (97%)
EPI1014581	A/mallard duck/Sweden/139647/2012 (A/H15N5) segment 2 (PB1)	3884.6	0.000000e+00	2218/2275 (97%)
EPI1014518	A/mallard duck/Sweden/139703/2012 (A/H15N5) segment 2 (PB1)	3884.6	0.000000e+00	2218/2275 (97%)
EPI1013669	A/mallard duck/Sweden/139752/2012 (A/H15N5) segment 2 (PB1)	3884.6	0.000000e+00	2218/2275 (97%)
EPI1013590	A/mallard duck/Sweden/139899/2012 (A/H15N5) segment 2 (PB1)	3884.6	0.000000e+00	2218/2275 (97%)
EPI1013575	A/mallard duck/Sweden/139579/2012 (A/H15N5) segment 2 (PB1)	3884.6	0.000000e+00	2218/2275 (97%)
EPI1013817	A/mallard duck/Netherlands/21/2014 (A/H4N6) segment 2 (PB1)	3879.1	0.000000e+00	2216/2274 (97%)
EPI623944	A/chicken/England/26352/2015 (A/H7N7) segment 2 (PB1)	3879.1	0.000000e+00	2216/2274 (97%)
EPI1011090	A/mallard duck/Netherlands/10/2013 (A/H4N6) segment 2 (PB1)	3873.5	0.000000e+00	2215/2274 (97%)
EPI1010959	A/mallard duck/Netherlands/24/2014 (A/H7N3) segment 2 (PB1)	3868.0	0.000000e+00	2214/2274 (97%)
EPI891412	A/mallard duck/Netherlands/30/2010 (A/H3N8) segment 2 (PB1)	3868.0	0.000000e+00	2214/2274 (97%)
EPI629347	A/chicken/NL-Barneveld/15004745-006-010/2015 (A/H7N7) segment 2 (PB1)	3868.0	0.000000e+00	2214/2274 (97%)
EPI629339	A/Chicken/NL-Barneveld/15004745-001-005/2015 (A/H7N7) segment 2 (PB1)	3868.0	0.000000e+00	2214/2274 (97%)
EPI874784	A/swan/Germany-SN/R10645/2016 (A/H5N5) segment 2 (PB1)	3864.3	0.000000e+00	2213/2274 (97%)
EPI1117259	A/M_Swan/NL-Groningen/16015826-001/2016 (A/H5N5) segment 2 (PB1)	3856.9	0.000000e+00	2212/2274 (97%)
EPI1014240	A/mallard duck/Netherlands/8/2014 (A/H7N5) segment 2 (PB1)	3856.9	0.000000e+00	2212/2274 (97%)
EPI994065	A/grey heron/Germany-SN/R572/2017 (A/H5N5) segment 2 (PB1)	3856.9	0.000000e+00	2212/2274 (97%)
EPI990776	A/greylag goose/Germany-NIAR11353-L02142/2016 (A/H5N5) segment 2 (PB1)	3856.9	0.000000e+00	2212/2274 (97%)
EPI961474	A/environment/Kamchatka/18/2016 (A/H5N5) segment 2 (PB1)	3856.9	0.000000e+00	2212/2274 (97%)
EPI954801	A/wigeon/Italy/16VIR9616-3/2016 (A/H5N5) segment 2 (PB1)	3856.9	0.000000e+00	2212/2274 (97%)
EPI954621	A/gadwall/Italy/17VIR133-2/2017 (A/H5N5) segment 2 (PB1)	3856.9	0.000000e+00	2212/2274 (97%)
EPI464944	A/chicken/Italy/12VIR-7785-67/2012 (A/H5N2) segment 2 (PB1)	3856.9	0.000000e+00	2213/2275 (97%)
EPI464936	A/turkey/Italy/12VIR-6607-5/2012 (A/H5N2) segment 2 (PB1)	3856.9	0.000000e+00	2213/2275 (97%)
EPI837762	A/mallard/Poland/10/2014 (A/H5N3) segment 2 (PB1)	3853.2	0.000000e+00	2199/2255 (97%)
EPI962072	A/Mute_swan/Hungary/5879/2017 (A/H5N5) segment 2 (PB1)	3851.4	0.000000e+00	2211/2274 (97%)
EPI873617	A/mute swan/Croatia/102/2016 (A/H5N5) segment 2 (PB1)	3851.4	0.000000e+00	2209/2271 (97%)
EPI839726	A/chicken/France/150169a/2015 (A/H5N1) segment 2 (PB1)	3851.4	0.000000e+00	2211/2274 (97%)
EPI464952	A/turkey/Italy/12VIR-8036-2/2012 (A/H5N2) segment 2 (PB1)	3851.4	0.000000e+00	2212/2275 (97%)
EPI916519	A/mute swan/Croatia/42/2017 (A/H5N5) segment 2 (PB1)	3849.5	0.000000e+00	2210/2273 (97%)
EPI942215	A/duck/Hubei/ZYSYG3/2015 (A/H6N2) segment 2 (PB1)	3845.8	0.000000e+00	2212/2276 (97%)
EPI891408	A/mallard duck/Netherlands/67/2008 (A/H10N7) segment 2 (PB1)	3845.8	0.000000e+00	2210/2274 (97%)
EPI959441	A/mute swan/Poland/64/2017 (A/H5N5) segment 2 (PB1)	3842.2	0.000000e+00	2209/2274 (97%)
EPI986360	A/chicken/Croatia/104/2017 (A/H5N5) segment 2 (PB1)	3840.3	0.000000e+00	2207/2271 (97%)

niman · February 16, 2018

Descriptions

Segment-ID	Name	Score	E-Value	Identity
EPI1170207	A/chicken/Kostroma/1721/2017 (A/H5N2) segment 3 (PA)	3973.3	0.000000e+00	2151/2151 (100%)
EPI1170198	A/chicken/Kostroma/1720/2017 (A/H5N2) segment 3 (PA)	3973.3	0.000000e+00	2151/2151 (100%)
EPI1170190	A/chicken/Kostroma/1719/2017 (A/H5N2) segment 3 (PA)	3973.3	0.000000e+00	2151/2151 (100%)
EPI1170179	A/chicken/Kostroma/1717/2017 (A/H5N2) segment 3 (PA)	3973.3	0.000000e+00	2151/2151 (100%)
EPI1158107	A/chicken/Kostroma/1718/2017 (A/H5N2) segment 3 (PA)	3973.3	0.000000e+00	2151/2151 (100%)
EPI1010494	A/green-winged teal/Egypt/871/2016 (A/H5N8) segment 3 (PA)	3934.5	0.000000e+00	2144/2151 (99%)
EPI1010488	A/green-winged teal/Egypt/877/2016 (A/H5N8) segment 3 (PA)	3934.5	0.000000e+00	2144/2151 (99%)
EPI1006724	A/common teal/Korea/W550/2016 (A/H5N8) segment 3 (PA)	3934.5	0.000000e+00	2144/2151 (99%)
EPI1006723	A/common teal/Korea/W549/2016 (A/H5N8) segment 3 (PA)	3934.5	0.000000e+00	2144/2151 (99%)
EPI1006722	A/common teal/Korea/W548/2016 (A/H5N8) segment 3 (PA)	3934.5	0.000000e+00	2144/2151 (99%)
EPI858843	A/painted stork/India/10CA03/2016 (A/H5N8) segment 3 (PA)	3934.5	0.000000e+00	2144/2151 (99%)
EPI1006721	A/common teal/Korea/W547/2016 (A/H5N8) segment 3 (PA)	3928.9	0.000000e+00	2143/2151 (99%)
EPI952638	A/chicken/Korea/H903/2017 (A/H5N8) segment 3 (PA)	3928.9	0.000000e+00	2143/2151 (99%)
EPI1006725	A/common teal/Korea/W555/2017 (A/H5N8) segment 3 (PA)	3923.4	0.000000e+00	2142/2151 (99%)
EPI926612	A/domestic duck/Siberia/103/2016 (A/H5N8) segment 3 (PA)	3917.9	0.000000e+00	2141/2151 (99%)
EPI925952	A/gadwall/Chany/97/2016 (A/H5N8) segment 3 (PA)	3917.9	0.000000e+00	2141/2151 (99%)
EPI952769	A/mallard duck/Korea/WA137/2017 (A/H5N8) segment 3 (PA)	3912.3	0.000000e+00	2140/2151 (99%)
EPI926604	A/domestic duck/Siberia/50K/2016 (A/H5N8) segment 3 (PA)	3906.8	0.000000e+00	2139/2151 (99%)
EPI1159808	A/Anser cygnoides/Hubei/FW44/2016 (A/H5N8) segment 3 (PA)	3901.2	0.000000e+00	2138/2151 (99%)
EPI1034973	A/grey heron/W779/2017 (A/H5N8) segment 3 (PA)	3901.2	0.000000e+00	2138/2151 (99%)
EPI954563	A/turkey/Italy/17VIR538-1/2017 (A/H5N8) segment 3 (PA)	3901.2	0.000000e+00	2138/2151 (99%)
EPI377637	A/northern shoveler/Georgia/1/2010 (A/H2N3) segment 3 (PA)	3735.0	0.000000e+00	2108/2151 (98%)
EPI614284	A/mallard/Republic of Georgia/1/2010 (A/H10N7) segment 3 (PA)	3712.9	0.000000e+00	2104/2151 (97%)
EPI363454	A/duck/Guangxi/1074/2006 (A/H6N2) segment 3 (PA)	3712.9	0.000000e+00	2104/2151 (97%)
EPI118295	A/duck/Jiang Xi/2374/2005 (A/H3N6) segment 3 (PA)	3712.9	0.000000e+00	2104/2151 (97%)
EPI1153560	A/duck/Mongolia/17/2011 (A/H4N3) segment 3 (PA)	3707.3	0.000000e+00	2103/2151 (97%)
EPI1036186	A/duck/Moscow/4652/2011 (A/H4N6) segment 3 (PA)	3701.8	0.000000e+00	2102/2151 (97%)
EPI363462	A/duck/Guangxi/1157/2006 (A/H6N2) segment 3 (PA)	3701.8	0.000000e+00	2102/2151 (97%)
EPI296255	A/wild duck/Korea/SH60/2004 (A/H1N1) segment 3 (PA)	3701.8	0.000000e+00	2102/2151 (97%)
EPI962865	A/aquatic bird/Korea/CN2/2009 (A/H5N2) segment 3 (PA)	3696.3	0.000000e+00	2101/2151 (97%)
EPI692567	A/duck/Sichuan/S4202/2011 (A/H4N2) segment 3 (PA)	3696.3	0.000000e+00	2101/2151 (97%)
EPI296257	A/wild duck/Korea/CSM38/2004 (A/H1N1) segment 3 (PA)	3696.3	0.000000e+00	2101/2151 (97%)
EPI262643	A/aquatic bird/Korea/w79/2005 (A/H5N2) segment 3 (PA)	3696.3	0.000000e+00	2101/2151 (97%)
EPI118321	A/duck/Jiang Xi/1850/2005 (A/H5N2) segment 3 (PA)	3696.3	0.000000e+00	2101/2151 (97%)
EPI118289	A/duck/Jiang Xi/1286/2005 (A/H5N2) segment 3 (PA)	3696.3	0.000000e+00	2101/2151 (97%)
EPI1133603	A/shelduck/Yasnopolyanske/4-08-02/2011 (A/H1N1) segment 3 (PA)	3690.7	0.000000e+00	2100/2151 (97%)
EPI614286	A/mallard/Republic of Georgia/3/2010 (A/H7N3) segment 3 (PA)	3690.7	0.000000e+00	2100/2151 (97%)
EPI493025	A/wild waterfowl/Dongting/C2383/2012 (A/H1N2) segment 3 (PA)	3690.7	0.000000e+00	2100/2151 (97%)
EPI363470	A/duck/Guangxi/1248/2006 (A/H6N2) segment 3 (PA)	3690.7	0.000000e+00	2100/2151 (97%)
EPI268977	A/mallard/Jiangxi/4408/2005 (A/H6N8) segment 3 (PA)	3690.7	0.000000e+00	2100/2151 (97%)
EPI262644	A/aquatic bird/Korea/w81/2005 (A/H5N2) segment 3 (PA)	3690.7	0.000000e+00	2100/2151 (97%)
EPI262642	A/aquatic bird/Korea/w74/2005 (A/H5N2) segment 3 (PA)	3690.7	0.000000e+00	2100/2151 (97%)
EPI140261	A/migratory duck/Jiang Xi/6568/2004 (A/H4N6) segment 3 (PA)	3690.7	0.000000e+00	2100/2151 (97%)
EPI1011028	A/mallard duck/Georgia/3/2012 (A/H7N3) segment 3 (PA)	3685.2	0.000000e+00	2099/2151 (97%)
EPI1010637	A/Bewick swan/Netherlands/1/2014 (A/H12N1) segment 3 (PA)	3685.2	0.000000e+00	2099/2151 (97%)
EPI773764	A/chicken/Netherlands/16007311-037041/2016 (A/H7N9) segment 3 (PA)	3685.2	0.000000e+00	2099/2151 (97%)
EPI717886	A/environment/Hubei-Jinzhou/02/2010 (A/H6N2) segment 3 (PA)	3685.2	0.000000e+00	2099/2151 (97%)
EPI614298	A/common coot/Republic of Georgia/1/2010 (A/H6N2) segment 3 (PA)	3685.2	0.000000e+00	2100/2152 (97%)
EPI614278	A/mallard/Republic of Georgia/2/2012 (A/H2N3) segment 3 (PA)	3685.2	0.000000e+00	2099/2151 (97%)
EPI360053	A/duck/Suphanburi/AI157/2005 (A/H6N1) segment 3 (PA)	3685.2	0.000000e+00	2099/2151 (97%)
EPI268817	A/duck/Hunan/177/2005 (A/H6N1) segment 3 (PA)	3685.2	0.000000e+00	2099/2151 (97%)
EPI262641	A/aquatic bird/Korea/w54/2005 (A/H5N2) segment 3 (PA)	3685.2	0.000000e+00	2099/2151 (97%)
EPI118337	A/duck/Jiang Xi/3345/2005 (A/H5N2) segment 3 (PA)	3685.2	0.000000e+00	2099/2151 (97%)
EPI1176421	A/duck/Mongolia/675/2010 (A/H1N1) segment 3 (PA)	3679.6	0.000000e+00	2098/2151 (97%)
EPI1168866	A/mallard/Askania-Nova/39-15-02/2011 (A/H7N7) segment 3 (PA)	3679.6	0.000000e+00	2098/2151 (97%)
EPI1133589	A/mallard/Nizhnegorsk/3-06-10/2010 (A/H7N7) segment 3 (PA)	3679.6	0.000000e+00	2098/2151 (97%)
EPI387412	A/ruddy shelduck/Mongolia/1-26/2007 (A/H3N8) segment 3 (PA)	3679.6	0.000000e+00	2098/2151 (97%)
EPI363534	A/duck/Guizhou/2773/2006 (A/H6N2) segment 3 (PA)	3679.6	0.000000e+00	2098/2151 (97%)
EPI326817	A/environment/Korea/CSM05/2004 (A/H3N1) segment 3 (PA)	3679.6	0.000000e+00	2098/2151 (97%)
EPI316751	A/mallard/Czech Republic/13438-29K/2010 (A/H11N9) segment 3 (PA)	3679.6	0.000000e+00	2098/2151 (97%)
EPI296253	A/wild duck/Korea/CW09/2005 (A/H1N1) segment 3 (PA)	3679.6	0.000000e+00	2098/2151 (97%)
EPI268979	A/duck/Hunan/3748/2004 (A/H6N8) segment 3 (PA)	3679.6	0.000000e+00	2098/2151 (97%)
EPI268960	A/mallard/Jiangxi/8346/2004 (A/H6N5) segment 3 (PA)	3679.6	0.000000e+00	2098/2151 (97%)
EPI1175851	A/duck/Mongolia/50/2010 (A/H10N8) segment 3 (PA)	3674.1	0.000000e+00	2097/2151 (97%)
EPI1175823	A/duck/Mongolia/46/2010 (A/H10N8) segment 3 (PA)	3674.1	0.000000e+00	2097/2151 (97%)
EPI1010821	A/mallard duck/Netherlands/2/2013 (A/H3N6) segment 3 (PA)	3674.1	0.000000e+00	2097/2151 (97%)
EPI890596	A/greater white-fronted goose/Netherlands/1/2012 (A/H1N1) segment 3 (PA)	3674.1	0.000000e+00	2097/2151 (97%)
EPI837836	A/environment/Korea/W267/2007 (A/H7N4) segment 3 (PA)	3674.1	0.000000e+00	2097/2151 (97%)
EPI599172	A/migratory duck/Jiangxi/21248/2009 (A/H10N8) segment 3 (PA)	3674.1	0.000000e+00	2097/2151 (97%)
EPI387502	A/canvasback/Mongolia/2-69/2007 (A/H10) segment 3 (PA)	3674.1	0.000000e+00	2095/2148 (97%)
EPI345928	A/whistling swan/Shimane/580/2002 (A/H5N3) segment 3 (PA)	3674.1	0.000000e+00	2098/2152 (97%)
EPI307313	A/aquatic bird/Korea/MA81/2007 (A/H5N2) segment 3 (PA)	3674.1	0.000000e+00	2097/2151 (97%)
EPI307311	A/mallard duck/Korea/6L/2007 (A/H7N6) segment 3 (PA)	3674.1	0.000000e+00	2097/2151 (97%)
EPI262663	A/aquatic bird/Korea/w222/2007 (A/H5N2) segment 3 (PA)	3674.1	0.000000e+00	2097/2151 (97%)
EPI258967	A/aquatic bird/Korea/w164/2007 (A/H5N2) segment 3 (PA)	3674.1	0.000000e+00	2097/2151 (97%)
EPI258966	A/aquatic bird/Korea/w163/2007 (A/H5N2) segment 3 (PA)	3674.1	0.000000e+00	2097/2151 (97%)
EPI131894	A/sharp-tailed sandpiper/Australia/10/2004 (A/H11N9) segment 3 (PA)	3674.1	0.000000e+00	2097/2151 (97%)
EPI69246	A/sharp-tailed sandpiper/Australia/6/2004 (A/H11N9) segment 3 (PA)	3674.1	0.000000e+00	2097/2151 (97%)
EPI1175916	A/duck/Mongolia/637/2010 (A/H4N6) segment 3 (PA)	3668.6	0.000000e+00	2096/2151 (97%)
EPI1133976	A/duck/Mongolia/244/2010 (A/H4N6) segment 3 (PA)	3668.6	0.000000e+00	2096/2151 (97%)
EPI1014324	A/mallard duck/Netherlands/2/2014 (A/H10N7) segment 3 (PA)	3668.6	0.000000e+00	2096/2151 (97%)
EPI891127	A/mallard duck/Netherlands/13/2013 (A/H7N7) segment 3 (PA)	3668.6	0.000000e+00	2096/2151 (97%)
EPI889396	A/mallard duck/Netherlands/1/2014 (A/H10N7) segment 3 (PA)	3668.6	0.000000e+00	2096/2151 (97%)
EPI774513	A/chicken/Netherlands/15007212/15 (A/H10N7) segment 3 (PA)	3668.6	0.000000e+00	2096/2151 (97%)
EPI749127	A/environment/Chongqing/02412/2012 (A/H5N1) segment 3 (PA)	3668.6	0.000000e+00	2096/2151 (97%)
EPI687186	A/chicken/Scotland/532/2016 (A/H5N1) segment 3 (PA)	3668.6	0.000000e+00	2096/2151 (97%)
EPI540395	A/duck/Bangladesh/1293/2008 (A/H6N1) segment 3 (PA)	3668.6	0.000000e+00	2096/2151 (97%)
EPI335409	A/aquatic bird/Korea/CN17/2009 (A/H6N2) segment 3 (PA)	3668.6	0.000000e+00	2096/2151 (97%)
EPI268962	A/duck/Guangxi/1455/2004 (A/H6N5) segment 3 (PA)	3668.6	0.000000e+00	2096/2151 (97%)
EPI540323	A/duck/Bangladesh/1575/2009 (A/H3N8) segment 3 (PA)	3663.0	0.000000e+00	2095/2151 (97%)
EPI540315	A/duck/Bangladesh/1576/2009 (A/H3N8) segment 3 (PA)	3663.0	0.000000e+00	2095/2151 (97%)
EPI540307	A/duck/Bangladesh/1574/2009 (A/H3N8) segment 3 (PA)	3663.0	0.000000e+00	2095/2151 (97%)
EPI538470	A/common shelduck/Mongolia/2187/2011 (A/H5N3) segment 3 (PA)	3663.0	0.000000e+00	2095/2151 (97%)
EPI538433	A/wild bird/Mongolia/2066/2011 (A/H5N3) segment 3 (PA)	3663.0	0.000000e+00	2095/2151 (97%)
EPI363890	A/duck/Guangxi/1330/2007 (A/H6N8) segment 3 (PA)	3663.0	0.000000e+00	2095/2151 (97%)
EPI363882	A/duck/Guangxi/890/2007 (A/H6N8) segment 3 (PA)	3663.0	0.000000e+00	2095/2151 (97%)
EPI307308	A/aquatic bird/Korea/w44/2005 (A/H7N3) segment 3 (PA)	3663.0	0.000000e+00	2095/2151 (97%)
EPI268961	A/mallard/Jiangxi/8341/2004 (A/H6N5) segment 3 (PA)	3663.0	0.000000e+00	2095/2151 (97%)
EPI262667	A/aquatic bird/Korea/w234/2007 (A/H5N2) segment 3 (PA)	3663.0	0.000000e+00	2095/2151 (97%)
EPI262666	A/aquatic bird/Korea/w231/2007 (A/H5N2) segment 3 (PA)	3663.0	0.000000e+00	2095/2151 (97%)

niman · February 16, 2018

Descriptions

Segment-ID	Name	Score	E-Value	Identity
EPI1170210	A/chicken/Kostroma/1721/2017 (A/H5N2) segment 5 (NP)	2765.6	0.000000e+00	1497/1497 (100%)
EPI1170203	A/chicken/Kostroma/1720/2017 (A/H5N2) segment 5 (NP)	2765.6	0.000000e+00	1497/1497 (100%)
EPI1170194	A/chicken/Kostroma/1719/2017 (A/H5N2) segment 5 (NP)	2765.6	0.000000e+00	1497/1497 (100%)
EPI1158109	A/chicken/Kostroma/1718/2017 (A/H5N2) segment 5 (NP)	2765.6	0.000000e+00	1497/1497 (100%)
EPI1170183	A/chicken/Kostroma/1717/2017 (A/H5N2) segment 5 (NP)	2760.0	0.000000e+00	1496/1497 (99%)
EPI909468	A/chicken/Astrakhan/3131/2016 (A/H5N8) segment 5 (NP)	2665.8	0.000000e+00	1479/1497 (98%)
EPI617869	A/mallard/Republic of Georgia/4/2012 (A/H1N1) segment 5 (NP)	2604.9	0.000000e+00	1468/1497 (98%)
EPI889966	A/mallard duck/Netherlands/7/2014 (A/H6N2) segment 5 (NP)	2582.7	0.000000e+00	1464/1497 (97%)
EPI704357	A/duck/Mongolia/200/2015 (A/H3N8) segment 5 (NP)	2571.7	0.000000e+00	1462/1497 (97%)
EPI1013473	A/mallard duck/Netherlands/11/2014 (A/H6N2) segment 5 (NP)	2566.1	0.000000e+00	1461/1497 (97%)
EPI493029	A/wild waterfowl/Dongting/C2383/2012 (A/H1N2) segment 5 (NP)	2560.6	0.000000e+00	1460/1497 (97%)
EPI438282	A/duck/Vietnam/LBM300/2012 (A/H10N2) segment 5 (NP)	2560.6	0.000000e+00	1460/1497 (97%)
EPI965388	A/duck/Bangladesh/25767/2015 (A/H6N1) segment 5 (NP)	2555.0	0.000000e+00	1459/1497 (97%)
EPI618038	A/domestic duck/Republic of Georgia/2/2010 (A/H10N7) segment 5 (NP)	2555.0	0.000000e+00	1460/1498 (97%)
EPI618025	A/domestic duck/Republic of Georgia/1/2010 (A/H10N7) segment 5 (NP)	2555.0	0.000000e+00	1460/1498 (97%)
EPI446508	A/wild goose/Dongting/C1037/2011 (A/H12N8) segment 5 (NP)	2551.3	0.000000e+00	1458/1497 (97%)
EPI683033	A/wild bird/Wuhan/WHHN58/2014 (A/H1N1) segment 5 (NP)	2549.5	0.000000e+00	1458/1497 (97%)
EPI683032	A/wild bird/Wuhan/WHHN16/2014 (A/H1N1) segment 5 (NP)	2549.5	0.000000e+00	1458/1497 (97%)
EPI1011333	A/mallard duck/Georgia/3/2012 (A/H7N3) segment 5 (NP)	2544.0	0.000000e+00	1457/1497 (97%)
EPI1006621	A/Anseriformes/Anhui/S107/2014 (A/H1N1) segment 5 (NP)	2544.0	0.000000e+00	1457/1497 (97%)
EPI969336	A/wild bird/Korea/SK14/2014 (A/H1N1) segment 5 (NP)	2544.0	0.000000e+00	1457/1497 (97%)
EPI961479	A/environment/Kamchatka/18/2016 (A/H5N5) segment 5 (NP)	2544.0	0.000000e+00	1457/1497 (97%)
EPI601644	A/duck/Jiangxi/5581/2013 (A/H0) segment 5 (NP)	2544.0	0.000000e+00	1457/1497 (97%)
EPI601635	A/duck/Jiangxi/5576/2013 (A/H0) segment 5 (NP)	2544.0	0.000000e+00	1457/1497 (97%)
EPI470398	A/wild waterfowl/Hong Kong/MPP1311/2013 (A/H2N9) segment 5 (NP)	2544.0	0.000000e+00	1457/1497 (97%)
EPI703486	A/duck/Anhui/FA258/2013 (A/H1N3) segment 5 (NP)	2542.1	0.000000e+00	1456/1496 (97%)
EPI1153578	A/duck/Mongolia/17/2011 (A/H4N3) segment 5 (NP)	2538.4	0.000000e+00	1456/1497 (97%)
EPI1055385	A/duck/Wuxi/JYJN203/2014 (A/H11N2) segment 5 (NP)	2538.4	0.000000e+00	1456/1497 (97%)
EPI1055377	A/chicken/Wuxi/JYJN132/2014 (A/H11N2) segment 5 (NP)	2538.4	0.000000e+00	1456/1497 (97%)
EPI1055369	A/duck/Wuxi/JYJN126/2014 (A/H11N2) segment 5 (NP)	2538.4	0.000000e+00	1456/1497 (97%)
EPI942171	A/duck/Ganzhou/GZ5/2015 (A/H4N6) segment 5 (NP)	2538.4	0.000000e+00	1456/1497 (97%)
EPI704373	A/duck/Mongolia/211/2015 (A/H3N8) segment 5 (NP)	2538.4	0.000000e+00	1456/1497 (97%)
EPI704365	A/duck/Mongolia/208/2015 (A/H3N8) segment 5 (NP)	2538.4	0.000000e+00	1456/1497 (97%)
EPI704316	A/duck/Mongolia/167/2015 (A/H3N8) segment 5 (NP)	2538.4	0.000000e+00	1456/1497 (97%)
EPI693707	A/duck/Mongolia/83/2015 (A/H3N8) segment 5 (NP)	2538.4	0.000000e+00	1456/1497 (97%)
EPI693699	A/duck/Mongolia/20/2015 (A/H3N8) segment 5 (NP)	2538.4	0.000000e+00	1456/1497 (97%)
EPI687188	A/chicken/Scotland/532/2016 (A/H5N1) segment 5 (NP)	2538.4	0.000000e+00	1458/1499 (97%)
EPI601705	A/duck/Jiangxi/285/2013 (A/H0) segment 5 (NP)	2538.4	0.000000e+00	1456/1497 (97%)
EPI591918	A/wild bird/Jiangxi/34503/2013 (A/H7N7) segment 5 (NP)	2538.4	0.000000e+00	1456/1497 (97%)
EPI461630	A/duck/Hunan/S1256/2012 (A/H3N8) segment 5 (NP)	2538.4	0.000000e+00	1456/1497 (97%)
EPI985015	A/mallard/Netherlands/15/2015 (A/H7N7) segment 5 (NP)	2536.6	0.000000e+00	1439/1472 (97%)
EPI1175904	A/duck/Mongolia/62/2013 (A/H3N1) segment 5 (NP)	2532.9	0.000000e+00	1455/1497 (97%)
EPI1175832	A/duck/Mongolia/487/2011 (A/H3N8) segment 5 (NP)	2532.9	0.000000e+00	1455/1497 (97%)
EPI1153533	A/duck/Mongolia/103/2011 (A/H3N8) segment 5 (NP)	2532.9	0.000000e+00	1455/1497 (97%)
EPI1134045	A/duck/Mongolia/30/2011 (A/H3N8) segment 5 (NP)	2532.9	0.000000e+00	1455/1497 (97%)
EPI1117262	A/M_Swan/NL-Groningen/16015826-001/2016 (A/H5N5) segment 5 (NP)	2532.9	0.000000e+00	1455/1497 (97%)
EPI1001771	A/grey heron/Germany-SN/R572/2017 (A/H5N5) segment 5 (NP)	2532.9	0.000000e+00	1455/1497 (97%)
EPI990771	A/greylag goose/Germany-NIAR11353-L02142/2016 (A/H5N5) segment 5 (NP)	2532.9	0.000000e+00	1455/1497 (97%)
EPI954803	A/wigeon/Italy/16VIR9616-3/2016 (A/H5N5) segment 5 (NP)	2532.9	0.000000e+00	1455/1497 (97%)
EPI954616	A/gadwall/Italy/17VIR133-2/2017 (A/H5N5) segment 5 (NP)	2532.9	0.000000e+00	1455/1497 (97%)
EPI889141	A/wild bird/Jiangxi/P419/2016 (A/H6N8) segment 5 (NP)	2532.9	0.000000e+00	1455/1497 (97%)
EPI884242	A/shoveler/Chany/82K/2014 (A/H3N8) segment 5 (NP)	2532.9	0.000000e+00	1455/1497 (97%)
EPI683042	A/chicken/Wuhan/WHJF/2014 (A/H5N2) segment 5 (NP)	2532.9	0.000000e+00	1455/1497 (97%)
EPI617996	A/mallard/Republic of Georgia/3/2010 (A/H7N3) segment 5 (NP)	2532.9	0.000000e+00	1455/1497 (97%)
EPI601836	A/duck/Jiangxi/17142/2013 (A/H0) segment 5 (NP)	2532.9	0.000000e+00	1456/1498 (97%)
EPI591924	A/wild bird/Jiangxi/35982/2013 (A/H7N7) segment 5 (NP)	2532.9	0.000000e+00	1455/1497 (97%)
EPI591912	A/wild bird/Jiangxi/34458/2013 (A/H7N7) segment 5 (NP)	2532.9	0.000000e+00	1455/1497 (97%)
EPI703477	A/duck/Yunan/V286/2012 (A/H1N2) segment 5 (NP)	2531.0	0.000000e+00	1454/1496 (97%)
EPI407865	A/Khaki Campbell duck/Karachi/NARC-23963/2010 (A/H4N6) segment 5 (NP)	2529.2	0.000000e+00	1454/1497 (97%)
EPI1159834	A/Duck/Dongting/D76-1/2016 (A/H5N7) segment 5 (NP)	2527.3	0.000000e+00	1454/1497 (97%)
EPI1061138	A/duck/Zhejiang/D6/2013 (A/H1N2) segment 5 (NP)	2527.3	0.000000e+00	1454/1497 (97%)
EPI1061137	A/duck/Zhejiang/D5/2013 (A/H1N2) segment 5 (NP)	2527.3	0.000000e+00	1454/1497 (97%)
EPI963334	A/duck/Bangladesh/24035/2014 (A/H10N1) segment 5 (NP)	2527.3	0.000000e+00	1454/1497 (97%)
EPI962067	A/Mute_swan/Hungary/5879/2017 (A/H5N5) segment 5 (NP)	2527.3	0.000000e+00	1454/1497 (97%)
EPI926005	A/domestic_duck/Siberia/49_feather/2016 (A/H6N8) segment 5 (NP)	2527.3	0.000000e+00	1454/1497 (97%)
EPI925997	A/mallard/Chany/355/2016 (A/H1N1) segment 5 (NP)	2527.3	0.000000e+00	1454/1497 (97%)
EPI925989	A/gadwall/Chany/315/2016 (A/H1N1) segment 5 (NP)	2527.3	0.000000e+00	1454/1497 (97%)
EPI925981	A/mallard/Chany/313/2016 (A/H1N1) segment 5 (NP)	2527.3	0.000000e+00	1454/1497 (97%)
EPI895347	A/Anser fabalis/China/Anhui/L256/2014 (A/H6N1) segment 5 (NP)	2527.3	0.000000e+00	1455/1498 (97%)
EPI895299	A/Anser fabalis/China/Anhui/L9/2014 (A/H6N2) segment 5 (NP)	2527.3	0.000000e+00	1454/1497 (97%)
EPI888671	A/swan/Germany-SN/R10645/2016 (A/H5N5) segment 5 (NP)	2527.3	0.000000e+00	1454/1497 (97%)
EPI841764	A/chicken/Jiangxi/C25/2014 (A/H7N7) segment 5 (NP)	2527.3	0.000000e+00	1454/1497 (97%)
EPI704447	A/duck/Mongolia/996/2015 (A/H3N8) segment 5 (NP)	2527.3	0.000000e+00	1454/1497 (97%)
EPI692489	A/duck/Hubei/S2213/2012 (A/H4N2) segment 5 (NP)	2527.3	0.000000e+00	1454/1497 (97%)
EPI683035	A/wild bird/Wuhan/CDHN01/2015 (A/H11N9) segment 5 (NP)	2527.3	0.000000e+00	1454/1497 (97%)
EPI617968	A/mallard/Republic of Georgia/1/2010 (A/H10N7) segment 5 (NP)	2527.3	0.000000e+00	1454/1497 (97%)
EPI599810	A/duck/Jiangxi/15867/2013 (A/H10N3) segment 5 (NP)	2527.3	0.000000e+00	1455/1498 (97%)
EPI596424	A/duck/Vietnam/LBM439/2013 (A/H6N6) segment 5 (NP)	2527.3	0.000000e+00	1454/1497 (97%)
EPI583947	A/chicken/Jiangxi/10784/2014 (A/H7N7) segment 5 (NP)	2527.3	0.000000e+00	1454/1497 (97%)
EPI916521	A/mute swan/Croatia/42/2017 (A/H5N5) segment 5 (NP)	2525.5	0.000000e+00	1453/1496 (97%)
EPI965425	A/black-tailed godwit/Bangladesh/24734/2015 (A/H7N5) segment 5 (NP)	2521.8	0.000000e+00	1454/1498 (97%)
EPI895307	A/Anser fabalis/China/Anhui/L63/2014 (A/H6N2) segment 5 (NP)	2521.8	0.000000e+00	1453/1497 (97%)
EPI683037	A/wild bird/Wuhan/CDHN173/2015 (A/H11N9) segment 5 (NP)	2521.8	0.000000e+00	1453/1497 (97%)
EPI683036	A/wild bird/Wuhan/CDHN22/2015 (A/H11N9) segment 5 (NP)	2521.8	0.000000e+00	1454/1498 (97%)
EPI617758	A/mallard/Republic of Georgia/14/2011 (A/H10N7) segment 5 (NP)	2521.8	0.000000e+00	1453/1497 (97%)
EPI600185	A/migratory duck/Jiangxi/33520/2013 (A/H10N7) segment 5 (NP)	2521.8	0.000000e+00	1454/1498 (97%)
EPI600179	A/migratory duck/Jiangxi/33238/2013 (A/H10N7) segment 5 (NP)	2521.8	0.000000e+00	1454/1498 (97%)
EPI600173	A/migratory duck/Jiangxi/33195/2013 (A/H10N7) segment 5 (NP)	2521.8	0.000000e+00	1454/1498 (97%)
EPI600167	A/migratory duck/Jiangxi/33158/2013 (A/H10N7) segment 5 (NP)	2521.8	0.000000e+00	1454/1498 (97%)
EPI600159	A/migratory duck/Jiangxi/33038/2013 (A/H10N7) segment 5 (NP)	2521.8	0.000000e+00	1454/1498 (97%)
EPI315101	A/mallard/PT/27972-B139/2007 (A/H9N2) segment 5 (NP)	2521.8	0.000000e+00	1453/1497 (97%)
EPI986363	A/chicken/Croatia/104/2017 (A/H5N5) segment 5 (NP)	2520.0	0.000000e+00	1452/1496 (97%)
EPI703476	A/duck/Fujian/JF47/2014 (A/H1N1) segment 5 (NP)	2520.0	0.000000e+00	1452/1496 (97%)
EPI1098988	A/duck/Bangladesh/31227/2016 (A/H6N2) segment 5 (NP)	2516.3	0.000000e+00	1453/1498 (96%)
EPI1006606	A/Anseriformes/Anhui/S3/2014 (A/H1N1) segment 5 (NP)	2516.3	0.000000e+00	1452/1497 (96%)
EPI895275	A/Anser fabalis/China/Anhui/S65/2014 (A/H6N2) segment 5 (NP)	2516.3	0.000000e+00	1453/1498 (96%)
EPI895251	A/Anser fabalis/China/Anhui/S20/2014 (A/H6N2) segment 5 (NP)	2516.3	0.000000e+00	1453/1498 (96%)
EPI617770	A/mallard/Republic of Georgia/15/2011 (A/H10N7) segment 5 (NP)	2516.3	0.000000e+00	1452/1497 (96%)
EPI602410	A/duck/Jiangxi/33763/2013 (A/H10N3) segment 5 (NP)	2516.3	0.000000e+00	1452/1497 (96%)
EPI602350	A/duck/Jiangxi/33777/2013 (A/H10N3) segment 5 (NP)	2516.3	0.000000e+00	1452/1497 (96%)

niman · February 16, 2018

Descriptions

Segment-ID	Name	Score	E-Value	Identity
EPI1170211	A/chicken/Kostroma/1721/2017 (A/H5N2) segment 8 (NS)	1548.6	0.000000e+00	838/838 (100%)
EPI1170204	A/chicken/Kostroma/1720/2017 (A/H5N2) segment 8 (NS)	1548.6	0.000000e+00	838/838 (100%)
EPI1170195	A/chicken/Kostroma/1719/2017 (A/H5N2) segment 8 (NS)	1548.6	0.000000e+00	838/838 (100%)
EPI1170184	A/chicken/Kostroma/1717/2017 (A/H5N2) segment 8 (NS)	1548.6	0.000000e+00	838/838 (100%)
EPI1158112	A/chicken/Kostroma/1718/2017 (A/H5N2) segment 8 (NS)	1543.1	0.000000e+00	837/838 (99%)
EPI890313	A/barnacle goose/Netherlands/1/2010 (A/H6N8) segment 8 (NS)	1487.7	0.000000e+00	827/838 (98%)
EPI890533	A/turnstone/Netherlands/1/2010 (A/H3N8) segment 8 (NS)	1476.6	0.000000e+00	826/839 (98%)
EPI889373	A/greater white-fronted goose/Netherlands/11/2009 (A/H6N1) segment 8 (NS)	1476.6	0.000000e+00	826/839 (98%)
EPI889253	A/greater white-fronted goose/Netherlands/5/2010 (A/H5N3) segment 8 (NS)	1476.6	0.000000e+00	826/839 (98%)
EPI514602	A/mallard/Sweden/50108/2006 (A/H4N6) segment 8 (NS)	1476.6	0.000000e+00	826/839 (98%)
EPI372498	A/mallard/Ukraine/05842-NAMRU3/2006 (A/H3N8) segment 8 (NS)	1476.6	0.000000e+00	826/839 (98%)
EPI1013985	A/mallard duck/Netherlands/38/2008 (A/H5N3) segment 8 (NS)	1471.1	0.000000e+00	825/839 (98%)
EPI890430	A/barnacle goose/Netherlands/1/2011 (A/H6N8) segment 8 (NS)	1471.1	0.000000e+00	824/838 (98%)
EPI513751	A/mallard/Sweden/79978/2008 (A/H4N6) segment 8 (NS)	1471.1	0.000000e+00	825/839 (98%)
EPI1014774	A/mallard duck/Netherlands/34/2010 (A/H3N2) segment 8 (NS)	1465.5	0.000000e+00	824/839 (98%)
EPI890796	A/mallard duck/Netherlands/27/2009 (A/H4N6) segment 8 (NS)	1465.5	0.000000e+00	824/839 (98%)
EPI890644	A/mallard duck/Netherlands/26/2011 (A/H11N9) segment 8 (NS)	1465.5	0.000000e+00	824/839 (98%)
EPI514948	A/mallard/Sweden/52405/2006 (A/H0) segment 8 (NS)	1465.5	0.000000e+00	824/839 (98%)
EPI367577	A/mallard/Czech Republic/14333-1K/2011 (A/H3N8) segment 8 (NS)	1465.5	0.000000e+00	824/839 (98%)
EPI1014569	A/mallard duck/Netherlands/16/2014 (A/H2N9) segment 8 (NS)	1460.0	0.000000e+00	823/839 (98%)
EPI1011300	A/white-fronted goose/Netherlands/3/2010 (A/H5N2) segment 8 (NS)	1460.0	0.000000e+00	823/839 (98%)
EPI1011021	A/mallard duck/Netherlands/14/2014 (A/H2N9) segment 8 (NS)	1460.0	0.000000e+00	823/839 (98%)
EPI890402	A/greater white-fronted goose/Netherlands/2/2010 (A/H5N2) segment 8 (NS)	1460.0	0.000000e+00	823/839 (98%)
EPI890365	A/Eurasian teal/Netherlands/1/2011 (A/H3N8) segment 8 (NS)	1460.0	0.000000e+00	823/839 (98%)
EPI890209	A/mallard duck/Netherlands/24/2013 (A/H4N6) segment 8 (NS)	1460.0	0.000000e+00	822/838 (98%)
EPI889779	A/mallard duck/Netherlands/15/2011 (A/H6N8) segment 8 (NS)	1460.0	0.000000e+00	823/839 (98%)
EPI1014533	A/mallard duck/Netherlands/18/2014 (A/H1N1) segment 8 (NS)	1456.3	0.000000e+00	821/837 (98%)
EPI1133534	A/black-necked crane/Zhaotong/ZT-12/2013 (A/H1N2) segment 8 (NS)	1454.4	0.000000e+00	822/839 (97%)
EPI1013926	A/mallard duck/Netherlands/9/2014 (A/H6N2) segment 8 (NS)	1454.4	0.000000e+00	822/839 (97%)
EPI1013491	A/white-fronted goose/Netherlands/5/2011 (A/H6N8) segment 8 (NS)	1454.4	0.000000e+00	822/839 (97%)
EPI890612	A/mallard duck/Netherlands/10/2012 (A/H6N1) segment 8 (NS)	1454.4	0.000000e+00	822/839 (97%)
EPI475943	A/great black-backed gull/Iceland/1110/2011 (A/H5N2) segment 8 (NS)	1454.4	0.000000e+00	822/839 (97%)
EPI890141	A/mallard duck/Netherlands/20/2011 (A/H6N8) segment 8 (NS)	1448.9	0.000000e+00	821/839 (97%)
EPI845240	A/mallard/Sweden/141546/2013 (A/H3N6) segment 8 (NS)	1448.9	0.000000e+00	821/839 (97%)
EPI309095	A/spur-winged goose/Nigeria/210/2008 (A/H5N2) segment 8 (NS)	1448.9	0.000000e+00	821/839 (97%)
EPI284361	A/mallard/Czech Republic/15902-17K/2009 (A/H6N2) segment 8 (NS)	1448.9	0.000000e+00	821/839 (97%)
EPI925974	A/pintail/Chany/198/2016 (A/H3N8) segment 8 (NS)	1443.4	0.000000e+00	820/839 (97%)
EPI890903	A/mallard duck/Netherlands/3/2015 (A/H7N7) segment 8 (NS)	1443.4	0.000000e+00	820/839 (97%)
EPI890133	A/mallard duck/Netherlands/2/2015 (A/H7N7) segment 8 (NS)	1443.4	0.000000e+00	820/839 (97%)
EPI889772	A/greater white-fronted goose/Netherlands/6/2011 (A/H6N8) segment 8 (NS)	1443.4	0.000000e+00	820/839 (97%)
EPI525965	A/eurasian wigeon/Mongolia/340V/2009 (A/H4N6) segment 8 (NS)	1443.4	0.000000e+00	821/840 (97%)
EPI387548	A/white-fronted goose/Mongolia/1-125/2008 (A/H3N8) segment 8 (NS)	1443.4	0.000000e+00	820/839 (97%)
EPI306425	A/shoveler/Koymor/118/2009 (A/H3) segment 8 (NS)	1443.4	0.000000e+00	821/840 (97%)
EPI925966	A/mallard/Chany/185/2016 (A/H3N8) segment 8 (NS)	1437.8	0.000000e+00	819/839 (97%)
EPI925958	A/teal/Chany/135/2016 (A/H3N8) segment 8 (NS)	1437.8	0.000000e+00	819/839 (97%)
EPI718530	A/Anas platyrhynchos/Belgium/17330cls42/2013 (A/H5N2) segment 8 (NS)	1437.8	0.000000e+00	819/839 (97%)
EPI624440	A/chicken/Italy/473/1999 (A/H7N1) segment 8 (NS)	1437.8	0.000000e+00	819/839 (97%)
EPI623942	A/chicken/England/26352/2015 (A/H7N7) segment 8 (NS)	1437.8	0.000000e+00	819/839 (97%)
EPI618642	A/mallard/Sweden/366/2002 (A/H11N9) segment 8 (NS)	1437.8	0.000000e+00	819/839 (97%)
EPI617999	A/garganey/Republic of Georgia/1/2011 (A/H4N2) segment 8 (NS)	1437.8	0.000000e+00	820/840 (97%)
EPI499903	A/turkey/Italy/472/1999 (A/H7N1) segment 8 (NS)	1437.8	0.000000e+00	819/839 (97%)
EPI485622	A/mallard/Sweden/16/2002 (A/H12N9) segment 8 (NS)	1437.8	0.000000e+00	819/839 (97%)
EPI464812	A/turkey/Italy/472/1999 (A/H7N1) segment 8 (NS)	1437.8	0.000000e+00	819/839 (97%)
EPI309096	A/spur-winged goose/Nigeria/226/2008 (A/H5N2) segment 8 (NS)	1437.8	0.000000e+00	819/839 (97%)
EPI309094	A/spur-winged goose/Nigeria/2/2008 (A/H5N2) segment 8 (NS)	1437.8	0.000000e+00	819/839 (97%)
EPI238668	A/turkey/Italy/977/1999 (A/H7N1) segment 8 (NS)	1437.8	0.000000e+00	819/839 (97%)
EPI89829	A/turkey/Italy/3620/1999 (A/H7N1) segment 8 (NS)	1437.8	0.000000e+00	819/839 (97%)
EPI69224	A/turkey/Italy/1265/99 (A/H7N1) segment 8 (NS)	1437.8	0.000000e+00	819/839 (97%)
EPI68189	A/turkey/Italy/977/99 (A/H7N1) segment 8 (NS)	1437.8	0.000000e+00	819/839 (97%)
EPI505522	A/chicken/Italy/1081/1999 (A/H7N1) segment 8 (NS)	1434.1	0.000000e+00	818/839 (97%)
EPI619108	A/mallard/Sweden/99377/2009 (A/H8N4) segment 8 (NS)	1432.3	0.000000e+00	819/840 (97%)
EPI619006	A/mallard/Sweden/770/2002 (A/H10N6) segment 8 (NS)	1432.3	0.000000e+00	818/839 (97%)
EPI618993	A/mallard/Sweden/768/2002 (A/H10N6) segment 8 (NS)	1432.3	0.000000e+00	818/839 (97%)
EPI618977	A/mallard/Sweden/766/2002 (A/H0) segment 8 (NS)	1432.3	0.000000e+00	818/839 (97%)
EPI618491	A/mallard/Sweden/101589/2009 (A/H11N9) segment 8 (NS)	1432.3	0.000000e+00	819/840 (97%)
EPI505571	A/turkey/Italy/1555/1999 (A/H7N1) segment 8 (NS)	1432.3	0.000000e+00	818/839 (97%)
EPI505542	A/turkey/Italy/1085/1999 (A/H7N1) segment 8 (NS)	1432.3	0.000000e+00	818/839 (97%)
EPI505529	A/turkey/Italy/1083/1999 (A/H7N1) segment 8 (NS)	1432.3	0.000000e+00	818/839 (97%)
EPI485680	A/mallard/Sweden/21/2002 (A/H5N2) segment 8 (NS)	1432.3	0.000000e+00	818/839 (97%)
EPI485625	A/Eurasian wigeon/Netherlands/4/2000 (A/H6N2) segment 8 (NS)	1432.3	0.000000e+00	818/839 (97%)
EPI485537	A/mallard/Sweden/43/2002 (A/H10N5) segment 8 (NS)	1432.3	0.000000e+00	818/839 (97%)
EPI433416	A/mallard/Czech Republic/15962-4T/2010 (A/H6N9) segment 8 (NS)	1432.3	0.000000e+00	819/840 (97%)
EPI433409	A/mallard/Czech Republic/15902-25K/2009 (A/H11N9) segment 8 (NS)	1432.3	0.000000e+00	819/840 (97%)
EPI433390	A/mallard/Czech Republic/15902-18K/2009 (A/H6N9) segment 8 (NS)	1432.3	0.000000e+00	819/840 (97%)
EPI367601	A/mallard/Czech Republic/15962-1T/2010 (A/H6N9) segment 8 (NS)	1432.3	0.000000e+00	819/840 (97%)
EPI327348	A/turkey/Italy/1067/1999 (A/H7N1) segment 8 (NS)	1432.3	0.000000e+00	818/839 (97%)
EPI314712	A/mallard/Czech Republic/15902-18K/2009 (A/H11N9) segment 8 (NS)	1432.3	0.000000e+00	819/840 (97%)
EPI251709	A/mallard/Sweden/41/2002 (A/H10N6) segment 8 (NS)	1432.3	0.000000e+00	818/839 (97%)
EPI238411	A/chicken/Italy/1067/1999 (A/H7N1) segment 8 (NS)	1432.3	0.000000e+00	818/839 (97%)
EPI236182	A/mallard/Sweden/21/2002 (A/H5N2) segment 8 (NS)	1432.3	0.000000e+00	818/839 (97%)
EPI89841	A/turkey/Italy/4169/99 (A/H7N1) segment 8 (NS)	1432.3	0.000000e+00	818/839 (97%)
EPI63324	A/chicken/Italy/1082/1999 (A/H7N1) segment 8 (NS)	1432.3	0.000000e+00	818/839 (97%)
EPI505579	A/turkey/Italy/2716/1999 (A/H7N1) segment 8 (NS)	1428.6	0.000000e+00	817/839 (97%)
EPI619115	A/mallard/Sweden/101165/2009 (A/H8N4) segment 8 (NS)	1426.7	0.000000e+00	818/840 (97%)
EPI514670	A/mallard/Sweden/7582/2003 (A/H4N6) segment 8 (NS)	1426.7	0.000000e+00	817/839 (97%)
EPI438359	A/chicken/Italy/1279/1999 (A/H7N1) segment 8 (NS)	1426.7	0.000000e+00	817/839 (97%)
EPI372514	A/garganey/Ukraine/05839-NAMRU3/2006 (A/H14N6) segment 8 (NS)	1426.7	0.000000e+00	817/839 (97%)
EPI364119	A/duck/Fujian/3264/2007 (A/H6N6) segment 8 (NS)	1426.7	0.000000e+00	818/840 (97%)
EPI327341	A/chicken/Italy/1391/1999 (A/H7N1) segment 8 (NS)	1426.7	0.000000e+00	817/839 (97%)
EPI238621	A/turkey/Italy/2732/1999 (A/H7N1) segment 8 (NS)	1426.7	0.000000e+00	817/839 (97%)
EPI238300	A/turkey/Italy/2379/2000 (A/H7N1) segment 8 (NS)	1426.7	0.000000e+00	817/839 (97%)
EPI235568	A/Anas angustirostris/Astrakhan/3088/2002 (A/H4N8) segment 8 (NS)	1426.7	0.000000e+00	817/839 (97%)
EPI69205	A/turkey/Italy/2732/1999 (A/H7N1) segment 8 (NS)	1426.7	0.000000e+00	817/839 (97%)
EPI69186	A/turkey/Italy/2715/99 (A/H7N1) segment 8 (NS)	1426.7	0.000000e+00	817/839 (97%)
EPI69148	A/turkey/Italy/3489/99 (A/H7N1) segment 8 (NS)	1426.7	0.000000e+00	817/839 (97%)
EPI68512	A/turkey/Italy/3488/1999 (A/H7N1) segment 8 (NS)	1426.7	0.000000e+00	817/839 (97%)
EPI68493	A/turkey/Italy/3185/99 (A/H7N1) segment 8 (NS)	1426.7	0.000000e+00	817/839 (97%)
EPI505543	A/turkey/Italy/1086/1999 (A/H7N1) segment 8 (NS)	1423.0	0.000000e+00	816/839 (97%)
EPI225341	A/pelican/Zambia/01/2006 (A/H3N6) segment 8 (NS)	1423.0	0.000000e+00	815/837 (97%)
EPI1010900	A/mallard duck/Netherlands/46/2006 (A/H1N1) segment 8 (NS)	1421.2	0.000000e+00	816/839 (97%)

niman · February 28, 2018

Isolate name:

A/chicken/Kostroma/1720/2017

Isolate ID:

EPI_ISL_297465

Passage details/history:

original

Type:

A / H5N2

Lineage:

Sample information

Collection date:

2017-12-22

Host	Gallus gallus domesticus

Additional host information:

Domestic status:

Domestic

Is vaccinated:

Location:

Russian Federation / Kostroma Oblast

Additional location information:

Health status:

Dead

Specimen source:

Organ

Strain or commercial product name used for vaccination:

Institute information

Originating lab:

Sample ID given by the sample provider:

Address:

Submitting lab:

State Research Center of Virology and Biotechnology (VECTOR)

Sample ID given by the submitting laboratory:

Authors:

Ivan,Susloparov;
Natalya,Goncharova;
Natalya,Kolosova;
Vasiliy,Marchenko;
Alexander,Ryzhikov

Address:

State Research Center of Virology and Biotechnology (VECTOR)
Emerging Zoonotic Diseases and Influenza
Vector Street Build 12 
630559 Koltsovo
Russian Federation

Publication

In vivo antiviral resistance

Antiviral resistance tested by experimental procedures

Adamantanes:

Unknown

Oseltamivir:

Unknown

Zanamivir:

Unknown

Peramivir:

Unknown

Other:

Unknown

Additional information

Antigenic characterization:

Note:

Sequence

segment	identifier	length	accession #
PB2	A/chicken/Kostroma/1720/2017	2329	EPI1170206
PB1	A/chicken/Kostroma/1720/2017	2329	EPI1170205
PA	A/chicken/Kostroma/1720/2017	2221	EPI1170198
HA	A/chicken/Kostroma/1720/2017	1776	EPI1170199
NP	A/chicken/Kostroma/1720/2017	1565	EPI1170203
NA	A/chicken/Kostroma/1720/2017	1394	EPI1170201
MP	A/chicken/Kostroma/1720/2017	1027	EPI1170200
NS	A/chicken/Kostroma/1720/2017	890	EPI1170204

Submitter information

Submitter:

Susloparov, Ivan

Submission Date:

2018-02-09

Last modifier:

Susloparov, Ivan

Last modified:

2018-02-11

Address:

State Research Center of Virology and Biotechnology (VECTOR)
Emerging Zoonotic Diseases and Influenza
Vector Street Build 12 
630559 Koltsovo
Russian Federation

niman · February 28, 2018

Isolate name:

A/chicken/Kostroma/1719/2017

Isolate ID:

EPI_ISL_297464

Passage details/history:

original

Type:

A / H5N2

Lineage:

Sample information

Collection date:

2017-12-22

Host	Gallus gallus domesticus

Additional host information:

Domestic status:

Domestic

Is vaccinated:

Location:

Russian Federation / Kostroma Oblast

Additional location information:

Health status:

Dead

Specimen source:

Organ

Strain or commercial product name used for vaccination:

Institute information

Originating lab:

Sample ID given by the sample provider:

Address:

Submitting lab:

State Research Center of Virology and Biotechnology (VECTOR)

Sample ID given by the submitting laboratory:

Authors:

Ivan,Susloparov;
Natalya,Goncharova;
Natalya,Kolosova;
Vasiliy,Marchenko;
Alexander,Ryzhikov

Address:

State Research Center of Virology and Biotechnology (VECTOR)
Emerging Zoonotic Diseases and Influenza
Vector Street Build 12 
630559 Koltsovo
Russian Federation

Publication

In vivo antiviral resistance

Antiviral resistance tested by experimental procedures

Adamantanes:

Unknown

Oseltamivir:

Unknown

Zanamivir:

Unknown

Peramivir:

Unknown

Other:

Unknown

Additional information

Antigenic characterization:

Note:

Sequence

segment	identifier	length	accession #
PB2	A/chicken/Kostroma/1719/2017	2329	EPI1170197
PB1	A/chicken/Kostroma/1719/2017	2329	EPI1170196
PA	A/chicken/Kostroma/1719/2017	2221	EPI1170190
HA	A/chicken/Kostroma/1719/2017	1776	EPI1170191
NP	A/chicken/Kostroma/1719/2017	1565	EPI1170194
NA	A/chicken/Kostroma/1719/2017	1394	EPI1170193
MP	A/chicken/Kostroma/1719/2017	1027	EPI1170192
NS	A/chicken/Kostroma/1719/2017	890	EPI1170195

Submitter information

Submitter:

Susloparov, Ivan

Submission Date:

2018-02-09

Last modifier:

Susloparov, Ivan

Last modified:

2018-02-11

Address:

State Research Center of Virology and Biotechnology (VECTOR)
Emerging Zoonotic Diseases and Influenza
Vector Street Build 12 
630559 Koltsovo
Russian Federation

H5N2 Clade 2.3.4.4 Confirmed In Kostromskaya Russia

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