niman Posted January 15, 2020 Report Share Posted January 15, 2020 (edited) Media report citing 2019-nCoV confirmation in resident in Japan ex-Wuhan. This thread will tally 2019-nCoV cases in Japan. Edited January 16, 2020 by niman Link to comment Share on other sites More sharing options...
niman Posted January 15, 2020 Author Report Share Posted January 15, 2020 New type pneumonia confirmed for the first time in Japan Travel history to China and Wuhan 2020.1.16 01:55Life body TwitterreactionFacebookfont sizeprinting Seafood market in Wuhan City, Hubei Province, China, where many patients with unknown pneumonia appeared = December, 2019 In Wuhan City, Hubei Province in central China, unexplained cases of pneumonia have been occurring one after another. A positive reaction for pneumonia was reported on Tuesday, officials said. It is the first time a patient has been confirmed in Japan, and the government is expected to consult with relevant ministries and agencies on the same day https://www.sankei.com/life/news/200116/lif2001160010-n1.html Link to comment Share on other sites More sharing options...
niman Posted January 15, 2020 Author Report Share Posted January 15, 2020 Title of link to breaking story Atypical pneumonia, travel history to the first confirmation China, Wuhan in Japan https://www.sankei.com/flash/newslist/flash-n1.html Link to comment Share on other sites More sharing options...
niman Posted January 15, 2020 Author Report Share Posted January 15, 2020 New type pneumonia confirmed for the first time in Japan Travel history to China and Wuhan Four 1053 1:57 on January 16, 2020 Sankei Shimbun In Wuhan City, Hubei Province in central China, unexplained cases of pneumonia have been occurring one after another. A positive reaction for pneumonia was reported on Tuesday, officials said. It is the first time a patient has been confirmed in Japan, and the government is expected to consult with relevant ministries and agencies on the same day. https://news.livedoor.com/article/detail/17669785/ Link to comment Share on other sites More sharing options...
niman Posted January 15, 2020 Author Report Share Posted January 15, 2020 New type pneumonia confirmed for the first time in Japan Travel history to China and Wuhan 1/16 (Thursday) 6:52 delivery In Wuhan City , Hubei Province in central China , unexplained cases of pneumonia have been occurring one after another. Officials said yesterday that a positive reaction for pneumonia had occurred. It is the first time that a patient has been confirmed in Japan, and the government is expected to consult with related ministries and agencies on the same day. https://headlines.yahoo.co.jp/hl?a=20200116-00000508-san-hlth Link to comment Share on other sites More sharing options...
niman Posted January 16, 2020 Author Report Share Posted January 16, 2020 In Wuhan, Hubei Province, China, pneumonia that seems to be caused by new coronaviruses is one after another.A man living in Kanagawa Prefecture who had traveled to Wuhan complained of pneumonia symptoms in Japan, and as a result of examination, a new corona virus was found. An interview with the Ministry of Health, Labor and Welfare revealed that the virus was detected. This is the first time that a new coronavirus infection has been confirmed in Japan. https://t.co/r3DFVNQ3qt?amp=1 Link to comment Share on other sites More sharing options...
niman Posted January 16, 2020 Author Report Share Posted January 16, 2020 (edited) On January 14, a medical institution in Kanagawa Prefecture reported to a public health center with pneumonia who had stayed in Wuhan, Hubei Province, China. About this person, when he / she visited a medical institution on January 6, a report of his / her stay history in Wuhan was made. It was reported based on the inspection system (similarity surveillance). 検 査 When the specimen of the patient was examined at the National Institute of Infectious Diseases (Murayama government office), a new coronavirus-positive result was obtained yesterday (January 15) at around 20:45. It is the first time that domestic cases of pneumonia related to the new coronavirus have been confirmed in Japan. に つ い て We will conduct active epidemiological surveys on this matter and promote risk assessment in cooperation with related organizations such as the World Health Organization (WHO). Overview (1) Age: 30s (2) Gender: Male (3) Resident prefecture: Kanagawa prefecture (4) Symptoms: fever since January 3rd. Returned from Wuhan, Hubei Province, China on January 6. On the same day, he visited a medical institution. Hospitalized from January 10th. On January 15, the symptoms subsided and the patient was discharged. (5) Country of stay: China (Wuhan, Hubei Province) (6) Action history in the country of stay: According to reports from the person himself, he has not stopped at the seafood market in Wuhan (South China Seafood Castle). Potential close contact with unspecified pneumonia patients in China. https://www.mhlw.go.jp/stf/newpage_08906.html Edited January 16, 2020 by niman Link to comment Share on other sites More sharing options...
niman Posted January 16, 2020 Author Report Share Posted January 16, 2020 Japan confirms first case of coronavirus KYODO Japan has confirmed its first case of infection with a new coronavirus, a government official said Thursday. A Chinese national who has traveled to Wuhan, eastern China, has tested positive in Japan, the official said. The Chinese national is a man in his 30s who lives in Kanagawa Prefecture. He returned from Wuhan on Jan. 6, and was hospitalized on Jan. 10. He has already recovered and was discharged from the hospital on Wednesday, the official said. The pneumonia-like virus has infected dozens of people in China since the outbreak began in Wuhan in December. https://www.japantimes.co.jp/news/2020/01/16/national/science-health/japan-first-coronavirus-case Link to comment Share on other sites More sharing options...
niman Posted January 16, 2020 Author Report Share Posted January 16, 2020 New type of viral pneumonia confirmed for the first time in Japan Male in their 30s living in the prefecture January 16, 2020 10:55Kanagawa Shimbun The Ministry of Health, Labor and Welfare said on Wednesday that a man who had traveled to Wuhan City tested positive for a new type of coronavirus pneumonia in Wuhan City, Hubei Province, China. This is the first time a patient has been confirmed in Japan. According to officials, the man is a 30-year-old Chinese who lives in the prefecture and has a fever on the 3rd and returns from Wuhan on the 6th. He was hospitalized on the 10th, recovered on the 15th and discharged. https://news.line.me/issue/oa-kanagawa/db9c6c7fe26f?utm_source=Twitter&utm_medium=share&utm_campaign=none Link to comment Share on other sites More sharing options...
niman Posted January 16, 2020 Author Report Share Posted January 16, 2020 (edited) Japan confirms 1st case of new coronavirus #Japan #Health & Welfare 36 min ago The Japanese health ministry says a new strain of coronavirus has been detected in a man who visited Wuhan, China. The inland Chinese city has been hit by a pneumonia outbreak that is likely caused by the virus. This is the first confirmed case of a new coronavirus infection in Japan. Ministry officials say the man in his 30s, who lives in Kanagawa Prefecture, near Tokyo, developed a fever in Wuhan on January 3. They say the man saw a doctor after returning to Japan on the 6th, and was hospitalized. The National Institute of Infectious Diseases conducted tests and detected the new coronavirus. The ministry says the man recovered and was discharged from the hospital on Wednesday. The man reportedly told officials that he didn't visit a seafood market in Wuhan that has been linked to most of the cases. They say the man may have been in close contact with people who were infected. A mysterious form of pneumonia started spreading in Wuhan last month. The new type of coronavirus has been detected in 41 patients, including a 61-year-old man who has died. https://www3.nhk.or.jp/nhkworld/en/news/20200116_23/ Edited January 16, 2020 by niman Link to comment Share on other sites More sharing options...
niman Posted January 16, 2020 Author Report Share Posted January 16, 2020 New type pneumonia, infection from father or Chinese man stays at home in Wuhan ... 1/16 (Thursday) 22:40 delivery A case of viral pneumonia of unknown cause, which was confirmed for the first time in Japan in Wuhan City , Hubei Province in central China, was the first confirmed problem in Japan. On the 16th, it was found that they had been in close contact with each other. The Ministry of Health, Labor and Welfare is examining the situation in detail, alleging that people have been infected. The 30-year-old man from Kanagawa Prefecture who returned to Japan after staying in Wuhan was infected. The same novel coronavirus that was detected in China was identified. According to officials, his father living in Wuhan also developed new types of pneumonia . Until the man returned, he had close contact with his father at home. Many patients are said to be involved in the seafood market in Wuhan, but the Ministry of Health, Labor and Welfare has said that men have not stopped by the market. On the other hand, there are no patients suspected of having secondary infections in Japan, including those living together with men, and the Ministry of Health, Labor and Welfare considers that "the likelihood of transmission is low". https://headlines.yahoo.co.jp/hl?a=20200116-00000606-san-hlth Link to comment Share on other sites More sharing options...
niman Posted January 16, 2020 Author Report Share Posted January 16, 2020 New type pneumonia, infection from father or Chinese man stays at home in Wuhan ... January 16, 2020 22:41Sankei News A case of viral pneumonia of unknown cause, which was confirmed for the first time in Japan in Wuhan City, Hubei Province in central China, was the first confirmed problem in Japan. On 16th, it was found that they had been in close contact with each other. The Ministry of Health, Labor and Welfare is examining the situation in detail, alleging that people have been infected. The 30-year-old man from Kanagawa Prefecture who returned to Japan after staying in Wuhan was infected. The same novel coronavirus that was detected in China was identified. According to officials, his father living in Wuhan also developed new types of pneumonia. Until the man returned, he had close contact with his father at home. Many patients are said to be involved in the seafood market in Wuhan, but the Ministry of Health, Labor and Welfare has said that men have not stopped by the market. On the other hand, there are no patients suspected of having secondary infections in Japan, including those living together with men, and the Ministry of Health, Labor and Welfare considers that "the likelihood of transmission is low". https://news.line.me/articles/oa-rp47341/29d172e6996b?utm_source=Twitter&utm_medium=share&utm_campaign=none Link to comment Share on other sites More sharing options...
niman Posted January 17, 2020 Author Report Share Posted January 17, 2020 Japan confirmed its first case of the virus, public broadcaster NHK reported on Thursday, quoting officials from Japan's Ministry of Health, Labor and Welfare. The man was released from a hospital after his condition improved, and no related sickness has been found in his family or among the medical staff who treated him, the report said. https://www.chinadaily.com.cn/a/202001/17/WS5e20c5b4a310128217271876.html Link to comment Share on other sites More sharing options...
niman Posted January 17, 2020 Author Report Share Posted January 17, 2020 Alert and response operations Diseases Biorisk reduction Disease outbreak news Novel Coronavirus – Japan (ex-China) Disease outbreak news 16 January 2020 The Japanese Ministry of Health, Labour and Welfare, today informed the World Health Organization (WHO) of a confirmed case of a novel coronavirus (2019-nCoV) in a person who travelled to Wuhan, China. This is the second confirmed case of 2019-nCoV that has been detected outside of China, following confirmation of a case in Thailand on 13 January. Considering global travel patterns, additional cases in other countries are likely. Coronaviruses are a large family of viruses that cause illness ranging from the common cold to more severe diseases such as Middle East Respiratory Syndrome and Severe Acute Respiratory Syndrome. 2019-nCoV is a new strain that has not been previously identified in humans. Much remains to be understood about the new coronavirus, which was first identified in China earlier this month. Not enough is known about 2019-nCoV to draw definitive conclusions about how it is transmitted, clinical features of disease, or the extent to which it has spread. The source also remains unknown. WHO encourages all countries to continue preparedness activities. On 10 January, WHO published information on how to monitor for cases, treat patients, prevent onward transmission in health care facilities, maintain necessary supplies, and communicate with the public about 2019-nCoV. The information includes advice on how to maintain hand and respiratory hygiene, and safe food and market practices. WHO is developing and updating this information in consultation with networks of experts across the globe. WHO’s interim guidance and other information on coronaviruses can be found here WHO advises against the application of any travel or trade restrictions based on the information available. If travellers develop respiratory illness before, during or after travel, they should seek medical attention and share travel history with their health care provider. https://www.who.int/csr/don/16-january-2020-novel-coronavirus-japan-ex-china/en/ Link to comment Share on other sites More sharing options...
niman Posted January 17, 2020 Author Report Share Posted January 17, 2020 Interview tonight 9 PM ET Dr. Henry Niman PhD VirologistAnother Fatality From The New SARS-Like Coronavirus And Another New Case In JapanSecond SARS 2.0 Infected Patient (69M) DiesSARS-Like Coronavirus Spreads To JapanCDC Issues Update And Warning on SARS 2.0 Link to comment Share on other sites More sharing options...
niman Posted January 17, 2020 Author Report Share Posted January 17, 2020 Japan confirms 1st case of infection with new coronavirus from China January 16, 2020 (Mainichi Japan) This supplied file photo shows a seafood market in Wuhan, central China, where an outbreak of the new pneumonia-like coronavirus began in December 2019. (Kyodo) In this Jan. 13, 2020, photo, travelers pass by a health checkpoint before entering immigration at the international airport in Beijing. (AP Photo/Ng Han Guan) TOKYO (Kyodo) -- A man has tested positive in Japan's first confirmed case of infection with pneumonia caused by a new coronavirus from China, the Japanese health ministry said Thursday. 【Related】China announces 2nd death from new coronavirus 【Related】China: Possible that new virus could spread between humans 【Related】Thailand reports case of coronavirus from China 【Related】China reports 1st death from new type of coronavirus The man in his 30s, a resident of Kanagawa Prefecture, south of Tokyo, returned to Japan on Jan. 6 after traveling to Wuhan, central China where an outbreak of pneumonia associated with the new virus began in December, according to the Ministry of Health, Labor and Welfare. A government source said the man is a Chinese national. The Japanese authorities said he possibly caught the disease from a carrier in the Chinese city and there are currently no suspected cases of secondary infection in Japan, including among his family members who live with him or doctors who have treated him. "The chances are slim that the infection will expand (in Japan)," a health ministry official said. The man first developed a fever on Jan. 3 while in Wuhan, and on his day of return visited a local doctor in Japan, mentioning his visit to the Chinese city. He visited another doctor last Friday since his fever did not abate and was hospitalized the same day. After concluding from an X-ray of his lungs on Tuesday that his condition with a fever of unknown origin could possibly deteriorate, the hospital notified the health ministry later that day. His infection was confirmed Wednesday by the National Institute of Infectious Diseases after two laboratory tests, where the first one showed negative. The man was discharged Wednesday and is now at home recuperating, with no fever but a slight cough, the ministry said. The man passed the quarantine test at the airport upon his return because he had taken some fever medicine. While the Japanese government declined to reveal the name of the airport, transport minister Kazuyoshi Akaba said his ministry will "do everything it can" to detect possible patients at airports and seaports. The pneumonia caused by the virus, which the World Health Organization recognized Tuesday as a novel coronavirus, has infected 41 people in Wuhan, with preliminary evidence suggesting the outbreak was associated with exposure in a seafood market as many among them worked or were customers there. The Chinese resident in Japan has told the Japanese health authorities that he did not visit the seafood market, making it likely that he had close contact with a carrier. The Chinese city's public health authorities have said they are investigating a case of an outbreak within a family over the possibility that the virus could be transmitted among humans. A Japanese health ministry official said the virus might be transmitted among humans if a person spends a long time with a carrier in proximity. One person among the 41 infected has died but the WHO said on its website Sunday that the patient had "other underlying health conditions." Thailand's Public Health Ministry reported Monday that a 61-year-old Chinese tourist from the city was confirmed to have the viral pneumonia. Coronaviruses usually cause common-cold symptoms, infecting the nose, sinuses or upper throat, and are spread through sneezing, coughing or direct contact. However, some types lead to more serious, sometimes deadly respiratory diseases, such as severe acute respiratory syndrome or Middle East respiratory syndrome, commonly known as SARS and MERS, respectively. SARS emerged in China in 2003, spreading worldwide and killing 774 people, possibly originating in bats. MERS, which is thought to spread from camels, was first reported in Saudi Arabia in 2012. These syndromes were ruled out as the cause of the outbreak in Wuhan. Japan's health ministry has called for people to wash their hands, gargle, and wear masks as a preventative measure as influenza and colds are common in this period. It has also said that nationals who have visited Wuhan should wear masks and get a medical checkup as soon as possible if they find themselves with a fever or cough, and tell medical institutions that they have returned from the city. https://mainichi.jp/english/articles/20200116/p2g/00m/0na/024000c Link to comment Share on other sites More sharing options...
niman Posted January 17, 2020 Author Report Share Posted January 17, 2020 36 minutes ago, niman said: Interview tonight 9 PM ET Dr. Henry Niman PhD VirologistAnother Fatality From The New SARS-Like Coronavirus And Another New Case In JapanSecond SARS 2.0 Infected Patient (69M) DiesSARS-Like Coronavirus Spreads To JapanCDC Issues Update And Warning on SARS 2.0 https://www.renseradio.com/listenlive.php Link to comment Share on other sites More sharing options...
niman Posted January 17, 2020 Author Report Share Posted January 17, 2020 11 hours ago, niman said: Interview tonight 9 PM ET Dr. Henry Niman PhD VirologistAnother Fatality From The New SARS-Like Coronavirus And Another New Case In JapanSecond SARS 2.0 Infected Patient (69M) DiesSARS-Like Coronavirus Spreads To JapanCDC Issues Update And Warning on SARS 2.0 http://mediaarchives.gsradio.net/rense/special/rense_011620_hr1.mp3 Link to comment Share on other sites More sharing options...
niman Posted January 17, 2020 Author Report Share Posted January 17, 2020 Alert and response operations Diseases Biorisk reduction Disease outbreak news Novel Coronavirus – Japan (ex-China) Disease outbreak news 17 January 2020 On 15 January 2020, the Ministry of Health, Labour and Welfare, Japan (MHLW) reported an imported case of laboratory-confirmed 2019-novel coronavirus (2019-nCoV) from Wuhan, Hubei Province, China. The case-patient is male, between the age of 30-39 years, living in Japan. The case-patient travelled to Wuhan, China in late December and developed fever on 3 January 2020 while staying in Wuhan. He did not visit the Huanan Seafood Wholesale Market or any other live animal markets in Wuhan. He has indicated that he was in close contact with a person with pneumonia. On 6 January, he traveled back to Japan and tested negative for influenza when he visited a local clinic on the same day. On 10 January 2020, due to his continued symptoms of cough, sore throat and fever, he visited a local hospital and was found to have abnormal chest x-ray with infiltrates. He was admitted to the hospital on the same day and had remained febrile until 14 January. On 14 January, his attending doctor notified the case to a local public health authority under the surveillance system for “Unidentified Serious Infectious Illness”. Samples were collected and sent to the National Institute of Infectious Diseases (NIID), and at NIID, polymerase chain reaction (PCR) testing and sequencing was performed twice, which identified very small amount of 2019-nCoV RNA on 15 January 2020. On 15 January, the case-patient was afebrile and was discharged from hospital. Currently, he is staying at home in a stable condition. Public health response Contact tracing and other epidemiological investigations are underway by the local health authorities in Japan; The Japanese Government has scaled up a whole-of-government coordination mechanism on the 16 January; The MHLW has strengthened surveillance for undiagnosed severe acute respiratory illnesses since the report of undiagnosed pneumonia in Wuhan, China; From 6 January, MHLW requested local health governments to be aware of the respiratory illnesses in Wuhan by using the existing surveillance system for serious infectious illness with unknown etiology; NIID is supporting local authorities on epidemiologic investigations including contact tracing; Quarantine and screening measures have been enhanced for travelers from Wuhan city at the point of entries since 7 January; NIID established an in-house PCR assay for nCoV on 16 January; Revision of the risk assessment by NIID is being conducted, including case definition of close contacts; The public risk communication has been enhanced; A hotline has been established among the different ministries in the government; The MHLW is working closely with WHO and other related Member States to foster mutual investigations and information sharing. WHO risk assessment This was the second exported case of novel coronavirus from Wuhan city, China. Since the initial report of cases in Wuhan city on 31 December 2019, and as of 12 January 2020, 41 laboratory-confirmed cases of nCoV infection, including 2 deaths in cases with underlying medical conditions have been reported to WHO. Two cases have been reported from Thailand. The source of the outbreak is still under investigation in Wuhan. Preliminary investigations have identified environmental samples positive for nCoV in Huanan Seafood Wholesale Market in Wuhan City, however some laboratory-confirmed patients did not report visiting this market. To date, there is no reported infection among healthcare workers in China, Thailand or Japan. No additional cases have been reported since 3 January in China. Additional investigations are needed to determine how the patients were infected, whether human-to-human transmission has been observed, mode(s) of transmission, the clinical spectrum of disease, and the extent of infection, including presence of subclinical cases that are undetected with current surveillance. It is critical to review all available information to fully understand the extent of transmissibility between people and likelihood of zoonotic spillover. WHO advice Although the source of the novel coronavirus causing this cluster of pneumonia and the mode(s) of transmission are unknown, it would be prudent to remind populations and health workers of the basic principles to reduce the general risk of transmission of acute respiratory infections: Avoiding close contact with people suffering from acute respiratory infections; Frequent hand-washing, especially after direct contact with ill people or their environment; Avoiding unprotected contact with farm or wild animals; People with symptoms of acute respiratory infection should practice cough etiquette (maintain distance, cover coughs and sneezes with disposable tissues or clothing, and wash hands); Within healthcare facilities, enhance standard infection prevention and control practices in hospitals, especially in emergency departments; WHO does not recommend any specific health measures for travelers. In case of symptoms suggestive of respiratory illness either during or after travel, the travelers are encouraged to seek medical attention and share their travel history with their health care provider. Travel guidance has been updated. Health authorities should work with travel, transport and tourism sectors to provide travellers with information to reduce the general risk of acute respiratory infections via travel health clinics, travel agencies, conveyance operators and at points of entry. WHO has provided interim guidance for novel coronaviruses WHO advises against the application of any travel or trade restrictions on Japan based on the information currently available on this event. For more information on novel coronavirus, please see: Technical guidance for novel coronavirus, WHO WHO travel advice for international travel and trade in relation to the outbreak of pneumonia caused by a new coronavirus in China Press statement by Ministry of Health, Labour and Welfare, Japan on 16 January 2020 (in Japanese) Press statement by Ministry of Health, Labour and Welfare, Japan on 6 January 2020 (in Japanese) Notice sent out from Health and Food Safety Planning Division, Quarantine Station Operation Management Office (in Japanese) Wuhan Municipal Health Commission's briefing on the pneumonia epidemic situation, (in Chinese) Disease outbreak news, Novel Coronavirus – Thailand (ex-China), 14 January 2020 https://www.who.int/csr/don/17-january-2020-novel-coronavirus-japan-ex-china/en/ Link to comment Share on other sites More sharing options...
niman Posted January 17, 2020 Author Report Share Posted January 17, 2020 A fish market in Wuhan, China, from where people have been confirmed to have been infected with a new coronavirus. | CNS / VIA KYODO NATIONAL / SCIENCE & HEALTH Japan confirms first case of coronavirus that has infected dozens in China KYODO, STAFF REPORT A Chinese national in his 30s who lives in Kanagawa Prefecture tested positive for the virus, the ministry said. He returned from Wuhan on Jan. 6 and was hospitalized on Jan. 10, but has already recovered and was discharged from the hospital on Wednesday. A ministry official said there are no other confirmed cases in Japan. The pneumonia-like virus has infected dozens of people in Wuhan, with preliminary evidence suggesting the outbreak was associated with exposure at a seafood market. The man treated in Japan had not visited the Wuhan seafood market, according to the health ministry. It is possible that he came in close contact with a person infected with the virus while in the city, the ministry said. Japanese authorities said he possibly caught the disease from a carrier in the Chinese city, and there are currently no suspected cases of secondary infection in Japan, including among his family members who live with him or doctors who have treated him. “The chances are slim that the infection will spread (in Japan),” a health ministry official said. Coronaviruses usually cause common-cold symptoms, infecting the nose, sinuses or upper throat, and are spread through sneezing, coughing or direct contact. However, some types lead to more serious, sometimes deadly respiratory diseases, such as severe acute respiratory syndrome or Middle East respiratory syndrome. SARS killed 349 people in mainland China and 299 in Hong Kong in 2002 and 2003. The man developed a fever on Jan. 3 while in Wuhan. He is now at home recuperating, the ministry said. His fever is gone but he has a slight cough. The man passed the quarantine test at the airport upon his return because he had taken some medicine. While the Japanese government declined to reveal which airport the man arrived at, transport minister Kazuyoshi Akaba said his ministry will “do everything it can” to detect possible patients at airports and seaports. His infection was confirmed Wednesday through a laboratory test by the National Institute of Infectious Diseases, leading the government to set up an information-gathering task force at the crisis management center under the Prime Minister’s Office that day. The health ministry issued a message to the public emphasizing hand-washing and other preventive measures similar to those taken against the common cold or influenza. It also called on those who have visited Wuhan and have experienced fever and coughing to wear masks and visit medical institutions promptly. It advised them to report that they have been to Wuhan when seeing a doctor. The pneumonia caused by the virus, which the World Health Organization recognized Tuesday as a novel coronavirus, has infected 41 people in Wuhan, with preliminary evidence suggesting the outbreak was associated with exposure at a seafood market, as many of them worked or were customers there. The infected resident in Japan has told health authorities that he did not visit the seafood market, making it likely that he had close contact with a carrier elsewhere. The Chinese city’s public health authorities have said they are investigating a case of an outbreak within one family over the possibility that the virus could be transmitted human to human. A Japanese health ministry official said the virus might be transmitted among humans if a person spends a long time in proximity to a carrier. Satoshi Kutsuna, an expert at the Disease Control and Prevention Center under the National Center for Global Health and Medicine, said in a web article that people don’t need to be excessively worried about the virus. Although the infection case between the couple suggests the possibility of human-to-human transmission, examinations on nearly 1,000 people who came in contact with the infected patients have shown they were not infected. This indicates that “it’s unlikely that it will spread widely around the globe,” Kutsuna wrote. Still, some Japanese travelers to China voiced concerns. “I thought the virus would come to Japan but it was sooner than I expected,” said Yoshihiro Miki, a 40-year-old from Saitama Prefecture, who was at Narita Airport and headed to Shanghai for several days. “A person died, so I’m worried. I’ll stay away from crowded places,”said a 30-year-old man from Tokyo’s Kita Ward who was headed to a destination near Wuhan. One person among the 41 infected has died but WHO said on its website Sunday that the patient had “other underlying health conditions.” Thailand’s Public Health Ministry reported Monday that a 61-year-old Chinese tourist from Wuhan was confirmed to have the viral pneumonia. SARS was identified in 2003, spreading worldwide and killing 774 people. It may have originated in bats. MERS, which is thought to have originated from camels, was first reported in Saudi Arabia in 2012. Those syndromes were ruled out as the cause of the outbreak in Wuhan. The Japanese health ministry has also said that those who have visited Wuhan should wear masks and get a medical checkup as soon as possible if they find themselves with a fever or cough. They should also inform medical institutions that they have returned from the city. https://www.japantimes.co.jp/news/2020/01/16/national/science-health/japan-first-coronavirus-case/#.XiHN7MhKjIW Link to comment Share on other sites More sharing options...
niman Posted January 17, 2020 Author Report Share Posted January 17, 2020 Partial Sequence Released at GISAID Link to comment Share on other sites More sharing options...
niman Posted January 17, 2020 Author Report Share Posted January 17, 2020 Virus name: BetaCoV/Kanagawa/1/2020 Accession ID: EPI_ISL_402126 Type: betacoronavirus Passage details/history: Original Sample information Collection date: 2020-01-14 Location: Kanagawa Prefecture, Japan Host: Human Additional location information: Gender: Male Patient age: 30s Patient status: Live Specimen source: Throat swab Additional host information: Patient infected in Wuhan, China Outbreak: Last vaccinated: Treatment: Sequencing technology: Assembly method: Coverage: Institute information Originating lab: Dept. of Virology III, National Institute of Infectious Diseases Address: 4-7-1 Gakuen, Musashi-Murayama, Tokyo 208-0011, Japan Sample ID given by the sample provider: NIID_01162020 Submitting lab: Dept. of Virology III, National Institute of Infectious Diseases Address: 4-7-1 Gakuen, Musashi-Murayama, Tokyo 208-0011, Japan Sample ID given by the submitting laboratory: NIID_01162020 Authors: Naganori Nao, Kazuya Shirato, Shutoku Matsuyama, Makoto Takeda Submitter information Submission Date: Jan-16-2020 Address: Dept. of Virology III, National Institute of Infectious Diseases, 4-7-1 Gakuen, Musashi-Murayama, Tokyo 208-0011, Japan FASTA >BetaCoV/Kanagawa/1/2020|EPI_ISL_402126 Link to comment Share on other sites More sharing options...
niman Posted January 17, 2020 Author Report Share Posted January 17, 2020 Top 100 matches at Genbank Sequences producing significant alignments: Select for downloading or viewing reports Description Max Score Total Score Query Cover E value Per. Ident Accession Select seq MG772934.1 Bat SARS-like coronavirus isolate bat-SL-CoVZXC21, complete genome 545 545 99% 4e-151 92.92% MG772934.1 Select seq MG772933.1 Bat SARS-like coronavirus isolate bat-SL-CoVZC45, complete genome 540 540 100% 2e-149 92.41% MG772933.1 Select seq DQ648857.1 Bat coronavirus (BtCoV/279/2005), complete genome 398 398 95% 1e-106 84.99% DQ648857.1 Select seq KY417149.1 Bat SARS-like coronavirus isolate Rs4255, complete genome 394 394 95% 2e-105 84.70% KY417149.1 Select seq KJ473814.1 BtRs-BetaCoV/HuB2013, complete genome 394 394 95% 2e-105 84.70% KJ473814.1 Select seq KF367457.1 Bat SARS-like coronavirus WIV1, complete genome 394 394 95% 2e-105 84.70% KF367457.1 Select seq KC881006.1 Bat SARS-like coronavirus Rs3367, complete genome 394 394 95% 2e-105 84.70% KC881006.1 Select seq FJ588686.1 Bat SARS CoV Rs672/2006, complete genome 394 394 95% 2e-105 84.70% FJ588686.1 Select seq AY304488.1 SARS coronavirus SZ16, complete genome 394 394 95% 2e-105 84.70% AY304488.1 Select seq MK211378.1 Coronavirus BtRs-BetaCoV/YN2018D, complete genome 389 389 95% 7e-104 84.42% MK211378.1 Select seq MK211377.1 Coronavirus BtRs-BetaCoV/YN2018C, complete genome 389 389 95% 7e-104 84.42% MK211377.1 Select seq MK062184.1 SARS coronavirus Urbani isolate icSARS-C7-MA, complete genome 389 389 95% 7e-104 84.42% MK062184.1 Select seq MK062183.1 SARS coronavirus Urbani isolate icSARS-C7, complete genome 389 389 95% 7e-104 84.42% MK062183.1 Select seq MK062182.1 SARS coronavirus Urbani isolate icSARS-C3-MA, complete genome 389 389 95% 7e-104 84.42% MK062182.1 Select seq MK062181.1 SARS coronavirus Urbani isolate icSARS-C3, complete genome 389 389 95% 7e-104 84.42% MK062181.1 Select seq MK062180.1 SARS coronavirus Urbani isolate icSARS-MA, complete genome 389 389 95% 7e-104 84.42% MK062180.1 Select seq MK062179.1 SARS coronavirus Urbani isolate icSARS, complete genome 389 389 95% 7e-104 84.42% MK062179.1 Select seq KY417152.1 Bat SARS-like coronavirus isolate Rs9401, complete genome 389 389 95% 7e-104 84.42% KY417152.1 Select seq KY417145.1 Bat SARS-like coronavirus isolate Rf4092, complete genome 389 389 95% 7e-104 84.42% KY417145.1 Select seq KY417144.1 Bat SARS-like coronavirus isolate Rs4084, complete genome 389 389 95% 7e-104 84.42% KY417144.1 Select seq KY417142.1 Bat SARS-like coronavirus isolate As6526, complete genome 389 389 95% 7e-104 84.42% KY417142.1 Select seq KF514407.1 SARS coronavirus ExoN1 strain SARS/VeroE6_lab/USA/ExoN1_c5.7P20/2010, complete genome 389 389 95% 7e-104 84.42% KF514407.1 Select seq JX993987.1 Bat coronavirus Rp/Shaanxi2011, complete genome 389 389 95% 7e-104 84.42% JX993987.1 Select seq JX163928.1 SARS coronavirus isolate Tor2/FP1-10895, complete genome 389 389 95% 7e-104 84.42% JX163928.1 Select seq JX163927.1 SARS coronavirus isolate Tor2/FP1-10851, complete genome 389 389 95% 7e-104 84.42% JX163927.1 Select seq JX163926.1 SARS coronavirus isolate Tor2/FP1-10912, complete genome 389 389 95% 7e-104 84.42% JX163926.1 Select seq JX163925.1 SARS coronavirus isolate Tor2/FP1-10895, complete genome 389 389 95% 7e-104 84.42% JX163925.1 Select seq JX163924.1 SARS coronavirus isolate Tor2/FP1-10851, complete genome 389 389 95% 7e-104 84.42% JX163924.1 Select seq JX163923.1 SARS coronavirus isolate Tor2/FP1-10912, complete genome 389 389 95% 7e-104 84.42% JX163923.1 Select seq JX162087.1 SARS coronavirus ExoN1 isolate c5P10, complete genome 389 389 95% 7e-104 84.42% JX162087.1 Select seq JN854286.1 SARS coronavirus HKU-39849 isolate recSARS-CoV HKU-39849, complete genome 389 389 95% 7e-104 84.42% JN854286.1 Select seq JQ316196.1 SARS coronavirus HKU-39849 isolate UOB, complete genome 389 389 95% 7e-104 84.42% JQ316196.1 Select seq JF292922.1 SARS coronavirus ExoN1 isolate c5P1, complete genome 389 389 95% 7e-104 84.42% JF292922.1 Select seq JF292915.1 SARS coronavirus MA15 isolate d4ym5, complete genome 389 389 95% 7e-104 84.42% JF292915.1 Select seq JF292909.1 SARS coronavirus MA15 isolate d2ym4, complete genome 389 389 95% 7e-104 84.42% JF292909.1 Select seq JF292906.1 SARS coronavirus MA15 ExoN1 isolate d3om5, complete genome 389 389 95% 7e-104 84.42% JF292906.1 Select seq JF292905.1 SARS coronavirus MA15 ExoN1 isolate d3om4, complete genome 389 389 95% 7e-104 84.42% JF292905.1 Select seq JF292903.1 SARS coronavirus MA15 ExoN1 isolate d4ym5, complete genome 389 389 95% 7e-104 84.42% JF292903.1 Select seq HQ890541.1 SARS coronavirus MA15 isolate d2ym1, complete genome 389 389 95% 7e-104 84.42% HQ890541.1 Select seq HQ890538.1 SARS coronavirus MA15 ExoN1 isolate d2om5, complete genome 389 389 95% 7e-104 84.42% HQ890538.1 Select seq HQ890535.1 SARS coronavirus MA15 ExoN1 isolate d2om2, complete genome 389 389 95% 7e-104 84.42% HQ890535.1 Select seq HQ890532.1 SARS coronavirus MA15 ExoN1 isolate d4ym2, complete genome 389 389 95% 7e-104 84.42% HQ890532.1 Select seq HQ890531.1 SARS coronavirus MA15 ExoN1 isolate d4ym1, complete genome 389 389 95% 7e-104 84.42% HQ890531.1 Select seq HQ890529.1 SARS coronavirus MA15 ExoN1 isolate d2ym4, complete genome 389 389 95% 7e-104 84.42% HQ890529.1 Select seq HQ890526.1 SARS coronavirus MA15 ExoN1 isolate d2ym1, complete genome 389 389 95% 7e-104 84.42% HQ890526.1 Select seq GU553365.1 SARS coronavirus HKU-39849 isolate TCVSP-HARROD-00003, complete genome 389 389 95% 7e-104 84.42% GU553365.1 Select seq GU553363.1 SARS coronavirus HKU-39849 isolate TCVSP-HARROD-00001, complete genome 389 389 95% 7e-104 84.42% GU553363.1 Select seq FJ882962.1 SARS coronavirus MA15 ExoN1 isolate P3pp10, complete genome 389 389 95% 7e-104 84.42% FJ882962.1 Select seq FJ882961.1 SARS coronavirus MA15 isolate P3pp5, complete genome 389 389 95% 7e-104 84.42% FJ882961.1 Select seq FJ882959.1 SARS coronavirus MA15 ExoN1 isolate P3pp6, complete genome 389 389 95% 7e-104 84.42% FJ882959.1 Select seq FJ882958.1 SARS coronavirus MA15 isolate P3pp7, complete genome 389 389 95% 7e-104 84.42% FJ882958.1 Select seq FJ882957.1 SARS coronavirus MA15, complete genome 389 389 95% 7e-104 84.42% FJ882957.1 Select seq FJ882956.1 SARS coronavirus ExoN1 isolate P3pp53, complete genome 389 389 95% 7e-104 84.42% FJ882956.1 Select seq FJ882954.1 SARS coronavirus ExoN1 isolate P3pp46, complete genome 389 389 95% 7e-104 84.42% FJ882954.1 Select seq FJ882953.1 SARS coronavirus MA15 ExoN1 isolate P3pp4, complete genome 389 389 95% 7e-104 84.42% FJ882953.1 Select seq FJ882952.1 SARS coronavirus MA15 isolate P3pp4, complete genome 389 389 95% 7e-104 84.42% FJ882952.1 Select seq FJ882951.1 SARS coronavirus MA15 ExoN1 isolate P3pp3, complete genome 389 389 95% 7e-104 84.42% FJ882951.1 Select seq FJ882950.1 SARS coronavirus ExoN1 isolate P3pp60, complete genome 389 389 95% 7e-104 84.42% FJ882950.1 Select seq FJ882949.1 SARS coronavirus wtic-MB isolate P3pp23, complete genome 389 389 95% 7e-104 84.42% FJ882949.1 Select seq FJ882948.1 SARS coronavirus MA15 isolate P3pp3, complete genome 389 389 95% 7e-104 84.42% FJ882948.1 Select seq FJ882947.1 SARS coronavirus wtic-MB isolate P3pp7, complete genome 389 389 95% 7e-104 84.42% FJ882947.1 Select seq FJ882945.1 SARS coronavirus MA15 isolate P3pp6, complete genome 389 389 95% 7e-104 84.42% FJ882945.1 Select seq FJ882944.1 SARS coronavirus ExoN1 isolate P3pp23, complete genome 389 389 95% 7e-104 84.42% FJ882944.1 Select seq FJ882943.1 SARS coronavirus MA15 ExoN1, complete genome 389 389 95% 7e-104 84.42% FJ882943.1 Select seq FJ882942.1 SARS coronavirus MA15 ExoN1 isolate P3pp5, complete genome 389 389 95% 7e-104 84.42% FJ882942.1 Select seq FJ882941.1 SARS coronavirus ExoN1 isolate P3pp8, complete genome 389 389 95% 7e-104 84.42% FJ882941.1 Select seq FJ882940.1 SARS coronavirus ExoN1 isolate P3pp37, complete genome 389 389 95% 7e-104 84.42% FJ882940.1 Select seq FJ882939.1 SARS coronavirus wtic-MB isolate P3pp16, complete genome 389 389 95% 7e-104 84.42% FJ882939.1 Select seq FJ882938.1 SARS coronavirus wtic-MB, complete genome 389 389 95% 7e-104 84.42% FJ882938.1 Select seq FJ882937.1 SARS coronavirus wtic-MB isolate P3pp18, complete genome 389 389 95% 7e-104 84.42% FJ882937.1 Select seq FJ882936.1 SARS coronavirus wtic-MB isolate P3pp2, complete genome 389 389 95% 7e-104 84.42% FJ882936.1 Select seq FJ882935.1 SARS coronavirus wtic-MB isolate P3pp21, complete genome 389 389 95% 7e-104 84.42% FJ882935.1 Select seq FJ882934.1 SARS coronavirus wtic-MB isolate P3pp29, complete genome 389 389 95% 7e-104 84.42% FJ882934.1 Select seq FJ882933.1 SARS coronavirus wtic-MB isolate P3pp6, complete genome 389 389 95% 7e-104 84.42% FJ882933.1 Select seq FJ882932.1 SARS coronavirus wtic-MB isolate P3pp14, complete genome 389 389 95% 7e-104 84.42% FJ882932.1 Select seq FJ882931.1 SARS coronavirus ExoN1 isolate P3pp12, complete genome 389 389 95% 7e-104 84.42% FJ882931.1 Select seq FJ882930.1 SARS coronavirus ExoN1, complete genome 389 389 95% 7e-104 84.42% FJ882930.1 Select seq FJ882929.1 SARS coronavirus ExoN1 isolate P3pp1, complete genome 389 389 95% 7e-104 84.42% FJ882929.1 Select seq FJ882928.1 SARS coronavirus ExoN1 isolate P1pp1, complete genome 389 389 95% 7e-104 84.42% FJ882928.1 Select seq FJ882927.1 SARS coronavirus wtic-MB isolate P1pp1, complete genome 389 389 95% 7e-104 84.42% FJ882927.1 Select seq FJ882926.1 SARS coronavirus ExoN1, complete genome 389 389 95% 7e-104 84.42% FJ882926.1 Select seq FJ959407.1 SARS coronavirus isolate A001, complete genome 389 389 95% 7e-104 84.42% FJ959407.1 Select seq FJ882963.1 SARS coronavirus P2, complete genome 389 389 95% 7e-104 84.42% FJ882963.1 Select seq EU371564.1 SARS coronavirus BJ182-12, complete genome 389 389 95% 7e-104 84.42% EU371564.1 Select seq EU371563.1 SARS coronavirus BJ182-8, complete genome 389 389 95% 7e-104 84.42% EU371563.1 Select seq EU371562.1 SARS coronavirus BJ182-4, complete genome 389 389 95% 7e-104 84.42% EU371562.1 Select seq EU371561.1 SARS coronavirus BJ182b, complete genome 389 389 95% 7e-104 84.42% EU371561.1 Select seq EU371560.1 SARS coronavirus BJ182a, complete genome 389 389 95% 7e-104 84.42% EU371560.1 Select seq EU371559.1 SARS coronavirus ZJ02, complete genome 389 389 95% 7e-104 84.42% EU371559.1 Select seq FJ429166.1 Recombinant SARS coronavirus, complete sequence 389 389 95% 7e-104 84.42% FJ429166.1 Select seq DQ898174.1 SARS coronavirus strain CV7, complete genome 389 389 95% 7e-104 84.42% DQ898174.1 Select seq DQ640652.1 SARS coronavirus GDH-BJH01, complete genome 389 389 95% 7e-104 84.42% DQ640652.1 Select seq AY864806.1 SARS coronavirus BJ202, complete genome 389 389 95% 7e-104 84.42% AY864806.1 Select seq AY864805.1 SARS coronavirus BJ162, complete genome 389 389 95% 7e-104 84.42% AY864805.1 Select seq DQ497008.1 SARS coronavirus strain MA-15, complete genome 389 389 95% 7e-104 84.42% DQ497008.1 Select seq AB257344.1 SARS coronavirus Frankfurt 1 genomic RNA, nearly complete genome, clone: persistent virus #21 389 389 95% 7e-104 84.42% AB257344.1 Select seq AY686864.1 SARS coronavirus B039, complete genome 389 389 95% 7e-104 84.42% AY686864.1 Select seq AY772062.1 SARS coronavirus WH20, complete genome 389 389 95% 7e-104 84.42% AY772062.1 Select seq AY613950.1 SARS coronavirus PC4-227, complete genome 389 389 95% 7e-104 84.42% AY613950.1 Select seq AY613949.1 SARS coronavirus PC4-136, complete genome 389 389 95% 7e-104 84.42% AY613949.1 Link to comment Share on other sites More sharing options...
niman Posted January 17, 2020 Author Report Share Posted January 17, 2020 Partial sequence of BetaCoV/Kanagawa/1/2020 is 369 BP and is identical to all published 2019-nCoV sequences. Link to comment Share on other sites More sharing options...
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