niman Posted February 15, 2016 Report Posted February 15, 2016 (edited) LOCUS KU707826 10648 bp RNA linear VRL 12-FEB-2016 DEFINITION Zika virus isolate SSABR1, complete genome. ACCESSION KU707826 VERSION KU707826.1 GI:992324757 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10648) AUTHORS Alcantara,L.C.J., Giovanetti,M., Nunes,M.R.T., Vasconcelos,J.M., Vianez,J.L. Jr. and da Silva,S.P. TITLE Zika virus genome from Salvador, Bahia, Brazilhttp://www.ncbi.nlm.nih.gov/nuccore/KU707826.1 Edited February 15, 2016 by niman
niman Posted February 16, 2016 Author Report Posted February 16, 2016 LOCUS KU707826 10648 bp RNA linear VRL 12-FEB-2016 DEFINITION Zika virus isolate SSABR1, complete genome. ACCESSION KU707826 VERSION KU707826.1 GI:992324757 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10648) AUTHORS Alcantara,L.C.J., Giovanetti,M., Nunes,M.R.T., Vasconcelos,J.M., Vianez,J.L. Jr. and da Silva,S.P. TITLE Zika virus genome from Salvador, Bahia, Brazil JOURNAL Unpublished REFERENCE 2 (bases 1 to 10648) AUTHORS Alcantara,L.C.J., Giovanetti,M., Nunes,M.R.T., Vasconcelos,J.M., Vianez,J.L. Jr. and da Silva,S.P. TITLE Direct Submission JOURNAL Submitted (11-FEB-2016) Centro de Pesquisas Goncalo Moniz, Fundacao Oswaldo Cruz, Rua Waldemar Falcao, 121, Candeal, Salvador, Bahia 40296710, Brazil COMMENT ##Assembly-Data-START## Assembly Method :: Mira v. v. 4.0; Geneious v. v. 7 Sequencing Technology :: IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10648 /organism="Zika virus" /mol_type="genomic RNA" /isolate="SSABR1" /isolation_source="serum" /host="Homo sapiens" /db_xref="taxon:64320" /country="Brazil" /collection_date="01-Jul-2015" /note="type: Asian" CDS 79..10350 /codon_start=1 /product="polyprotein" /protein_id="AMH87239.1" /db_xref="GI:992324758" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSMVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST QVRYLGEEGSTPGVL" ORIGIN 1 gacagttcga gtttgaagcg aaagctagca acagtatcaa caggttttat ttggatttgg 61 aaacgagagt ttctggtcat gaaaaaccca aaaaagaaat ccggaggatt ccggattgtc 121 aatatgctaa aacgcggagt agcccgtgtg agcccctttg ggggcttgaa gaggctgcca 181 gccggacttc tgctgggtca tgggcccatc aggatggtct tggcgattct agcctttttg 241 agattcacgg caatcaagcc atcactgggt ctcatcaata gatggggttc agtggggaaa 301 aaagaggcta tggaaataat aaagaagttc aagaaagatc tggctgccat gctgagaata 361 atcaatgcta ggaaggagaa gaagagacga ggcgcagata ctagtgtcgg aattgttggc 421 ctcctgctga ccacagctat ggcagcggag gtcactagac gtgggagtgc atactatatg 481 tacttggaca gaaacgatgc tggggaggcc atatcttttc caaccacatt ggggatgaat 541 aagtgttata tacagatcat ggatcttgga cacatgtgtg atgccaccat gagctatgaa 601 tgccctatgc tggatgaggg ggtggaacca gatgacgtcg attgttggtg caacacgacg 661 tcaacttggg ttgtgtacgg aacctgccat cacaaaaaag gtgaagcacg gagatctaga 721 agagctgtga cgctcccctc ccattccact aggaagctgc aaacgcggtc gcaaacctgg 781 ttggaatcaa gagaatacac aaagcacttg attagagtcg aaaattggat attcaggaac 841 cctggcttcg cgttagcagc agctgccatc gcttggcttt tgggaagctc aacgagccaa 901 aaagtcatat acttggtcat gatactgctg attgccccgg catacagcat caggtgcata 961 ggagtcagca atagggactt tgtggaaggt atgtcaggtg ggacctgggt tgatgttgtc 1021 ttggaacatg gaggttgtgt caccgtaatg gcacaggaca aaccgactgt cgacatagag 1081 ctggttacaa caacagtcag caacatggcg gaggtaagat cctactgcta tgaggcatca 1141 atatcagaca tggcttcgga cagccgctgc ccaacacaag gtgaagccta ccttgacaag 1201 caatcagaca ctcaatatgt ctgcaaaaga acgttagtgg acagaggctg gggaaatgga 1261 tgtggacttt ttggcaaagg gagcctggtg acatgcgcta agtttgcatg ctccaagaaa 1321 atgaccggga agagcatcca gccagagaat ctggagtacc ggataatgct gtcagttcat 1381 ggctcccagc acagtgggat gattgttaat gacacaggac atgaaactga tgagaataga 1441 gcgaaagttg agataacgcc caattcacca agagccgaag ccaccctggg gggttttgga 1501 agcctaggac ttgattgtga accgaggaca ggccttgact tttcagattt gtattacttg 1561 actatgaata acaagcactg gttggttcac aaggagtggt tccacgacat tccattacct 1621 tggcacgctg gggcagacac cggaactcca cactggaaca acaaagaagc actggtagag 1681 ttcaaggacg cacatgccaa aaggcaaact gtcgtggttc tagggagtca agaaggagca 1741 gttcacacgg cccttgctgg agctctggag gctgagatgg atggtgcaaa gggaaggctg 1801 tcctctggcc acttgaaatg tcgcctgaaa atggataaac ttagattgaa gggcgtgtca 1861 tactccttgt gtactgcagc gttcacattc accaagatcc cggctgaaac actgcacggg 1921 acagtcacag tggaggtaca gtacgcaggg acagatggac cttgcaaggt tccagctcag 1981 atggcggtgg acatgcaaac tctgacccca gttgggaggt tgataaccgc taaccccgta 2041 atcactgaaa gcactgagaa ctctaagatg atgctggaac ttgatccacc atttggggac 2101 tcttacattg tcataggagt cggggagaag aagatcaccc accactggca caggagtggc 2161 agcaccattg gaaaagcatt tgaagccact gtgagaggtg ccaagagaat ggcagtcttg 2221 ggagacacag cctgggactt tggatcagtt ggaggcgctc tcaactcatt gggcaagggc 2281 atccatcaaa tttttggagc agctttcaaa tcattgtttg gaggaatgtc ctggttctca 2341 caaattctca ttggaacgtt gctgatgtgg ttgggtctga acacaaagaa tggatctatt 2401 tcccttatgt gcttggcctt agggggagtg ttgatcttct tatccacagc cgtctctgct 2461 gatgtggggt gctcggtgga cttctcaaag aaggagacga gatgcggtac aggggtgttc 2521 gtctataacg acgttgaagc ctggagggac aggtacaagt accatcctga ctccccccgt 2581 agattggcag cagcagtcaa gcaagcctgg gaagatggta tctgcgggat ctcctctgtt 2641 tcaagaatgg aaaacatcat gtggagatca gtagaagggg agctcaacgc aatcctggaa 2701 gagaatggag ttcaactgac ggtcgttgtg ggatctgtaa aaaaccccat gtggagaggt 2761 ccacagagat tgcccgtgcc tgtgaacgag ctgccccacg gctggaaggc ttgggggaaa 2821 tcgtacttcg tcagagcagc aaagacaaat aacagctttg tcgtggatgg tgacacactg 2881 aaggaatgcc cactcaaaca tagagcatgg aacagctttc ttgtggagga tcatgggttc 2941 ggggtatttc acactagtgt ctggctcaag gttagagaag attattcatt agagtgtgat 3001 ccagccgtta ttggaacagc tgttaaggga aaggaggctg tacacagtga tctaggctac 3061 tggattgaga gtgagaagaa tgacacatgg aggctgaaga gggcccatct gatcgagatg 3121 aaaacatgtg aatggccaaa gtcccacaca ttgtggacag atggaataga agagagtgat 3181 ctgatcatac ccaagtcttt agctgggcca ctcagccatc acaataccag agagggctac 3241 aggacccaaa tgaaagggcc atggcacagt gaagagcttg aaattcggtt tgaggaatgc 3301 ccaggcacta aggtccacgt ggaggaaaca tgtggaacaa gaggaccatc tctgagatca 3361 accactgcaa gcggaagggt gatcgaggaa tggtgctgca gggagtgcac aatgccccca 3421 ctgtcgttcc gggctaaaga tggctgttgg tatggaatgg agataaggcc caggaaagaa 3481 ccagaaagca acttagtaag gtcaatggtg actgcaggat caactgatca catggaccac 3541 ttctcccttg gagtgcttgt gattctgctc atggtgcagg aagggctgaa gaagagaatg 3601 accacaaaga tcatcataag cacatcaatg gcagtgctgg tagctatgat cctgggagga 3661 ttttcaatga gtgacctggc taagcttgca attttgatgg gtgccacctt cgcggaaatg 3721 aacactggag gagatgtagc tcatctggcg ctgatagcgg cattcaaagt cagaccagcg 3781 ttgctggtat ctttcatctt cagagctaat tggacacccc gtgaaagcat gctgctggcc 3841 ttggcctcgt gtcttttgca aactgcgatc tccgccttgg aaggcgacct gatggttctc 3901 atcaatggtt ttgctttggc ctggttggca atacgagcga tggttgttcc acgcactgat 3961 aacatcacct tggcaatcct ggctgctctg acaccactgg cccggggcac actgcttgtg 4021 gcgtggagag caggccttgc tacttgcggg gggtttatgc tcctctctct gaagggaaaa 4081 ggcagtgtga agaagaactt accatttgtc atggccctgg gactaaccgc tgtgaggctg 4141 gtcgacccca tcaacgtggt gggactgctg ttgctcacaa ggagtgggaa gcggagctgg 4201 ccccctagcg aagtactcac agctgttggc ctgatatgcg cattggctgg agggttcgcc 4261 aaggcagata tagagatggc tgggcccatg gccgcggtcg gtctgctaat tgtcagttac 4321 gtggtctcag gaaagagtgt ggacatgtac attgaaagag caggtgacat cacatgggaa 4381 aaagatgcgg aagtcactgg aaacagtccc cggctcgatg tggcgctaga tgagagtggt 4441 gatttctccc tggtggagga tgacggtccc cccatgagag agatcatact caaggtggtc 4501 ctgatgacca tctgtggcat gaacccaata gccataccct ttgcagctgg agcgtggtac 4561 gtatacgtga agactggaaa aaggagtggt gctctatggg atgtgcctgc tcccaaggaa 4621 gtaaaaaagg gggagaccac agatggagtg tacagagtaa tgactcgtag actgctaggt 4681 tcaacacaag ttggagtggg agttatgcaa gagggggtct ttcacactat gtggcacgtc 4741 acaaaaggat ccgcgctgag aagcggtgaa gggagacttg atccatactg gggagatgtc 4801 aagcaggatc tggtgtcata ctgtggtcca tggaagctag atgccgcctg ggacgggcac 4861 agcgaggtgc agctcttggc cgtgcccccc ggagagagag cgaggaacat ccagactctg 4921 cccggaatat ttaagacaaa ggatggggac attggagcgg ttgcgctgga ttacccagca 4981 ggaacttcag gatctccaat cctagacaag tgtgggagag tgataggact ttatggcaat 5041 ggggtcgtga tcaaaaatgg gagttatgtt agtgccatca cccaagggag gagggaggaa 5101 gagactcctg ttgagtgctt cgagccttcg atgctgaaga agaagcagct aactgtctta 5161 gacttgcatc ctggagctgg gaaaaccagg agagttcttc ctgaaatagt ccgtgaagcc 5221 ataaaaacaa gactccgtac tgtgatctta gctccaacca gggttgtcgc tgctgaaatg 5281 gaggaggccc ttagagggct tccagtgcgt tatatgacaa cagcagtcaa tgtcacccac 5341 tctggaacag aaatcgtcga cttaatgtgc catgccacct tcacttcacg tctactacag 5401 ccaatcagag tccccaacta taatctgtat attatggatg aggcccactt cacagatccc 5461 tcaagtatag cagcaagagg atacatttca acaagggttg agatgggcga ggcggctgcc 5521 atcttcatga ccgccacgcc accaggaacc cgtgacgcat ttccggactc caactcacca 5581 attatggaca ccgaagtgga agtcccagag agagcctgga gctcaggctt tgattgggtg 5641 acggatcatt ctggaaaaac agtttggttt gttccaagcg tgaggaacgg caatgagatc 5701 gcagcttgtc tgacaaaggc tggaaaacgg gtcatacagc tcagcagaaa gacttttgag 5761 acagagttcc agaaaacaaa acatcaagag tgggactttg tcgtgacaac tgacatttca 5821 gagatgggcg ccaactttaa agctgaccgt gtcatagatt ccaggagatg cctaaagccg 5881 gtcatacttg atggcgagag agtcattctg gctggaccca tgcctgtcac acatgccagc 5941 gctgcccaga ggagggggcg cataggcagg aatcccaaca aacctggaga tgagtatctg 6001 tatggaggtg ggtgcgcaga gactgacgaa gaccatgcac actggcttga agcaagaatg 6061 ctccttgaca atatttacct ccaagatggc ctcatagcct cgctctatcg acctgaggcc 6121 gacaaagtag cagccattga gggagagttc aagcttagga cggagcaaag gaagaccttt 6181 gtggaactca tgaaaagagg agatcttcct gtttggctgg cctatcaggt tgcatctgcc 6241 ggaataacct acacagatag aagatggtgc tttgatggca cgaccaacaa caccataatg 6301 gaagacagtg tgccggcaga ggtgtggacc agacacggag agaaaagagt gctcaaaccg 6361 aggtggatgg acgccagagt ttgttcagat catgcggccc tgaagtcatt caaggagttt 6421 gccgctggga aaagaggagc ggcttttgga gtgatggaag ccctgggaac actgccagga 6481 cacatgacag agagattcca ggaagccatt gacaacctcg ctgtgctcat gcgggcagag 6541 actggaagca ggccttacaa agccgcggcg gcccaattgc cggagaccct agagaccatt 6601 atgcttttgg ggttgctggg aacagtctcg ctgggaatct tcttcgtctt gatgaggaac 6661 aagggcatag ggaagatggg ctttggaatg gtgactcttg gggccagcgc atggctcatg 6721 tggctctcgg aaattgagcc agccagaatt gcatgtgtcc tcattgttgt gtttctattg 6781 ctggtggtgc tcatacctga gccagaaaag caaagatctc cccaggacaa ccaaatggca 6841 atcatcatca tggtagcagt aggtcttctg ggcttgatta ccgccaatga actcggatgg 6901 ttggagagaa caaagagtga cctaagccat ctaatgggaa ggagagagga gggggcaacc 6961 ataggattct caatggacat tgacctgcgg ccagcctcag cttgggccat ctatgctgcc 7021 ttgacaactt tcattacccc agccgtccaa catgcagtga ccacttcata caacaactac 7081 tccttaatgg cgatggccac gcaagctgga gtgttgtttg gtatgggcaa agggatgcca 7141 ttctacgcat gggactttgg agtcccgctg ctaatgatag gttgctactc acaattaaca 7201 cccctgaccc taatagtggc catcattttg ctcgtggcgc actacatgta cttgatccca 7261 gggctgcagg cagcagctgc gcgtgctgcc cagaagagaa cggcagctgg catcatgaag 7321 aaccctgttg tggatggaat agtggtgact gacattgaca caatgacaat tgacccccaa 7381 gtggagaaaa agatgggaca ggtgctactc atagcagtag ccgtctccag cgccatactg 7441 tcgcggaccg cctgggggtg gggggaggct ggggccctga tcacagccgc aacttccact 7501 ttgtgggaag gctctccgaa caagtactgg aactcctcta cagccacttc actgtgtaac 7561 atttttaggg gaagttactt ggctggagct tctctaatct acacagtaac aagaaacgct 7621 ggcttggtca agagacgtgg gggtggaaca ggagagaccc tgggagagaa atggaaggcc 7681 cgcttgaacc agatgtcggc cctggagttc tactcctaca aaaagtcagg catcaccgag 7741 gtgtgcagag aagaggcccg ccgcgccctc aaggacggtg tggcaacggg aggccatgct 7801 gtgtcccgag gaagtgcaaa gctgagatgg ttggtggagc ggggatacct gcagccctat 7861 ggaaaggtca ttgatcttgg atgtggcaga gggggctgga gttactacgc cgccaccatc 7921 cgcaaagttc aagaagtgaa aggatacaca aaaggaggcc ctggtcatga agaacccgtg 7981 ttggtgcaaa gctatgggtg gaacatagtc cgtcttaaga gtggggtgga cgtctttcat 8041 atggcggctg agccgtgtga cacgttgctg tgtgacatag gtgagtcatc atctagtcct 8101 gaagtggaag aagcacggac gctcagagtc ctctccatgg tgggggattg gcttgaaaaa 8161 agaccaggag ccttttgtat aaaggtgttg tgcccataca ccagcactat gatggaaacc 8221 ctggagcgac tgcagcgtag gtatggggga ggactggtca gagtgccact ctcccgcaac 8281 tctacacatg agatgtattg ggtctctgga gcgaaaagca acaccataaa aagtgtgtcc 8341 accacgagcc agctcctctt ggggcgcatg gacgggccta ggaggccagt gaaatatgag 8401 gaggatgtga atctcggctc tggcacgcgg gctgtggtaa gctgcgctga agctcccaac 8461 atgaagatca ttggtaaccg cattgaaagg atccgcagtg agcacgcgga aacgtggttc 8521 tttgacgaga accacccata taggacatgg gcttaccatg gaagctatga ggcccccaca 8581 caagggtcag cgtcctctct aataaacggg gttgtcaggc tcctgtcaaa accctgggat 8641 gtggtgactg gagtcacagg aatagccatg accgacacca caccgtatgg tcagcaaaga 8701 gttttcaagg aaaaagtgga cactagggtg ccagaccccc aagaaggcac tcgtcaggtt 8761 atgagcatgg tctcttcctg gttgtggaaa gagctaggca aacacaaacg gccacgagtc 8821 tgtaccaaag aagagttcat caacaaggtt cgtagcaatg cagcattagg ggcaatattt 8881 gaagaggaaa aagagtggaa gactgcagtg gaagctgtga acgatccaag gttctgggct 8941 ctagtggata aggaaagaga gcaccacctg agaggagagt gccagagttg tgtgtacaac 9001 atgatgggaa aaagagaaaa gaaacaaggg gaatttggaa aggccaaggg cagccgcgcc 9061 atctggtata tgtggctagg ggctagattt ctagagttcg aagcccttgg attcttgaac 9121 gaggatcact ggatggggag agagaactca ggaggtggtg ttgaagggct gggattacaa 9181 agactcggat atgtcctaga agagatgagt cgtataccag gaggaaggat gtatgcagat 9241 gacactgctg gctgggacac ccgcatcagc aggtttgatc tggagaatga agctctaatc 9301 accaaccaaa tggaaaaagg gcacagggcc ttggcattgg ccataatcaa gtacacatac 9361 caaaacaaag tggtaaaggt ccttagacca gctgaaaaag ggaaaacagt tatggacatt 9421 atttcgagac aagaccaaag ggggagcgga caagttgtca cttacgctct taacacattt 9481 accaacctag tggtgcaact cattcggaat atggaggctg aggaagttct agagatgcaa 9541 gacttgtggc tgctgcggag gtcagagaaa gtgaccaact ggttgcagag caacggatgg 9601 gataggctca aacgaatggc agtcagtgga gatgattgcg ttgtgaagcc aattgatgat 9661 aggtttgcac atgccctcag gttcttgaat gatatgggaa aagttaggaa ggacacacaa 9721 gagtggaaac cctcaactgg atgggacaac tgggaagaag ttccgttttg ctcccaccac 9781 ttcaacaagc tccatctcaa ggacgggagg tccattgtgg ttccctgccg ccaccaagat 9841 gaactgattg gccgggcccg cgtctctcca ggggcgggat ggagcatccg ggagactgct 9901 tgcctagcaa aatcatatgc gcaaatgtgg cagctccttt atttccacag aagggacctc 9961 cgactgatgg ccaatgccat ttgttcatct gtgccagttg actgggttcc aactgggaga 10021 actacctggt caatccatgg aaagggagaa tggatgacca ctgaagacat gcttgtggtg 10081 tggaacagag tgtggattga ggagaacgac cacatggaag acaagacccc agttacgaaa 10141 tggacagaca tcccctattt gggaaaaagg gaagacttgt ggtgtggatc tctcataggg 10201 cacagaccgc gcaccacctg ggctgagaac attaaaaaca cagtcaacat ggtgcgcagg 10261 atcataggtg atgaagaaaa gtacatggac tacctatcca cccaagttcg ctacttgggt 10321 gaagaagggt ctacacctgg agtgctgtaa gcaccagtct taatgttgtc aggcctgcta 10381 gtcagccaca gcttggggaa agctgtgcag cctgtgaccc ccccaggaga agctgggaaa 10441 ccaagcctat agtcaggccg agaacgccat ggcacggaag aagccatgct gcctgtgagc 10501 ccctcagagg acactgagtc aaaaaacccc acgcgcttgg aggcgcagga tgggaaaaga 10561 aggtggcgac cttccccacc cttcaatctg gggcctgaac tggagatcag ctgtggatct 10621 ccagaagagg gactagtggt tagaggag
niman Posted February 16, 2016 Author Report Posted February 16, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds1852518525100%0.0100%KU365779.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds1850718507100%0.099%KU365777.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds1850218502100%0.099%KU365780.1Select seq gb|KU509998.1|Zika virus strain Haiti/1225/2014, complete genome1842018420100%0.099%KU509998.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds1842018420100%0.099%KU365778.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds1842018420100%0.099%KU312312.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds1841718417100%0.099%KJ776791.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome1841118411100%0.099%KU501215.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome1840818408100%0.099%KU321639.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds1838418384100%0.099%KU501217.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds1838118381100%0.099%KU647676.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds1838118381100%0.099%KU501216.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds177661776699%0.098%JN860885.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds177211772198%0.099%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds1761217612100%0.098%EU545988.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds164691646999%0.096%HQ234499.1
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