nCoV Sequences In England 50F & 23M Same Lineage Dominant In US

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nCoV sequences BetaCoV/England/01/2020| (50F) and BetaCoV/England/02/2020| (23M) same lineage as Shenzhen and US (WA, IL, CA, AZ) plus new polymorphisms.

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Slight differences between sequences including mixed signal at one position for BetaCoV/England/01/2020

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Virus detail
Virus name:	BetaCoV/England/01/2020
Accession ID:	EPI_ISL_407071
Type:	betacoronavirus
Passage details/history:	Original
Sample information
Collection date:	2020-01-29
Location:	England
Host:	Human
Additional location information:
Gender:	Female
Patient age:	50
Patient status:
Specimen source:	swab
Additional host information:
Outbreak:	England cluster patient 1
Last vaccinated:
Treatment:
Sequencing technology:	Illumina HiSeq
Assembly method:	PHE pipeline (BWA-SAMtools-Quasibam)
Coverage:	13000x
Institute information
Originating lab:	Respiratory Virus Unit, Microbiology Services Colindale, Public Health England
Address:	61 Colindale Avenue, London, NW9 5EQ, United Kingdom
Sample ID given by the sample provider:
Submitting lab:	Respiratory Virus Unit, Microbiology Services Colindale, Public Health England
Address:	61 Colindale Avenue, London, NW9 5EQ, United Kingdom
Sample ID given by the submitting laboratory:
Authors:	Monica Galiano, Shahjahan Miah, Richard Myers, Angie Lackenby, Omolola Akinbami, Tiina Talts, Leena Bhaw, Kirstin Edwards, Jonathan Hubb, Joanna Ellis, Maria Zambon
Submitter information
Submitter:	Maria Zambon
Submission Date:	2020-02-03
Address:	61 Colindale Avenue, London, NW9 5EQ, United Kingdom

FASTA

>BetaCoV/England/01/2020|EPI_ISL_407071

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Virus detail
Virus name:	BetaCoV/England/02/2020
Accession ID:	EPI_ISL_407073
Type:	betacoronavirus
Passage details/history:	Original
Sample information
Collection date:	2020-01-29
Location:	England
Host:	Human
Additional location information:
Gender:	male
Patient age:	23
Patient status:
Specimen source:	swab
Additional host information:
Outbreak:	England cluster patient 2
Last vaccinated:
Treatment:
Sequencing technology:	Illumina HiSeq
Assembly method:	PHE pipeline (BWA-SAMtools-Quasibam)
Coverage:	17000x
Institute information
Originating lab:	Respiratory Virus Unit, Microbiology Services Colindale, Public Health England
Address:	61 Colindale Avenue, London, NW9 5EQ, United Kingdom
Sample ID given by the sample provider:
Submitting lab:	Respiratory Virus Unit, Microbiology Services Colindale, Public Health England
Address:	61 Colindale Avenue, London, NW9 5EQ, United Kingdom
Sample ID given by the submitting laboratory:
Authors:	Monica Galiano, Shahjahan Miah, Richard Myers, Angie Lackenby, Omolola Akinbami, Tiina Talts, Leena Bhaw, Kirstin Edwards, Jonathan Hubb, Joanna Ellis, Maria Zambon.
Submitter information
Submitter:	Maria Zambon
Submission Date:	2020-02-03
Address:	61 Colindale Avenue, London, NW9 5EQ, United Kingdom

FASTA

>BetaCoV/England/02/2020|EPI_ISL_407073

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Two people, a University of York student and one of their relatives, continue to be treated for coronavirus in the specialist infectious diseases unit at Newcastle Royal Victoria Infirmary.

https://www.portsmouth.co.uk/health/coronavirus-hampshire-university-student-returning-china-isolation-after-feeling-unwell-1385126