niman Posted February 3, 2020 Report Share Posted February 3, 2020 nCoV sequences BetaCoV/England/01/2020| (50F) and BetaCoV/England/02/2020| (23M) same lineage as Shenzhen and US (WA, IL, CA, AZ) plus new polymorphisms. Link to comment Share on other sites More sharing options...
niman Posted February 3, 2020 Author Report Share Posted February 3, 2020 Slight differences between sequences including mixed signal at one position for BetaCoV/England/01/2020 Link to comment Share on other sites More sharing options...
niman Posted February 3, 2020 Author Report Share Posted February 3, 2020 Virus detail Virus name: BetaCoV/England/01/2020 Accession ID: EPI_ISL_407071 Type: betacoronavirus Passage details/history: Original Sample information Collection date: 2020-01-29 Location: England Host: Human Additional location information: Gender: Female Patient age: 50 Patient status: Specimen source: swab Additional host information: Outbreak: England cluster patient 1 Last vaccinated: Treatment: Sequencing technology: Illumina HiSeq Assembly method: PHE pipeline (BWA-SAMtools-Quasibam) Coverage: 13000x Institute information Originating lab: Respiratory Virus Unit, Microbiology Services Colindale, Public Health England Address: 61 Colindale Avenue, London, NW9 5EQ, United Kingdom Sample ID given by the sample provider: Submitting lab: Respiratory Virus Unit, Microbiology Services Colindale, Public Health England Address: 61 Colindale Avenue, London, NW9 5EQ, United Kingdom Sample ID given by the submitting laboratory: Authors: Monica Galiano, Shahjahan Miah, Richard Myers, Angie Lackenby, Omolola Akinbami, Tiina Talts, Leena Bhaw, Kirstin Edwards, Jonathan Hubb, Joanna Ellis, Maria Zambon Submitter information Submitter: Maria Zambon Submission Date: 2020-02-03 Address: 61 Colindale Avenue, London, NW9 5EQ, United Kingdom FASTA >BetaCoV/England/01/2020|EPI_ISL_407071 Link to comment Share on other sites More sharing options...
niman Posted February 3, 2020 Author Report Share Posted February 3, 2020 Virus detail Virus name: BetaCoV/England/02/2020 Accession ID: EPI_ISL_407073 Type: betacoronavirus Passage details/history: Original Sample information Collection date: 2020-01-29 Location: England Host: Human Additional location information: Gender: male Patient age: 23 Patient status: Specimen source: swab Additional host information: Outbreak: England cluster patient 2 Last vaccinated: Treatment: Sequencing technology: Illumina HiSeq Assembly method: PHE pipeline (BWA-SAMtools-Quasibam) Coverage: 17000x Institute information Originating lab: Respiratory Virus Unit, Microbiology Services Colindale, Public Health England Address: 61 Colindale Avenue, London, NW9 5EQ, United Kingdom Sample ID given by the sample provider: Submitting lab: Respiratory Virus Unit, Microbiology Services Colindale, Public Health England Address: 61 Colindale Avenue, London, NW9 5EQ, United Kingdom Sample ID given by the submitting laboratory: Authors: Monica Galiano, Shahjahan Miah, Richard Myers, Angie Lackenby, Omolola Akinbami, Tiina Talts, Leena Bhaw, Kirstin Edwards, Jonathan Hubb, Joanna Ellis, Maria Zambon. Submitter information Submitter: Maria Zambon Submission Date: 2020-02-03 Address: 61 Colindale Avenue, London, NW9 5EQ, United Kingdom FASTA >BetaCoV/England/02/2020|EPI_ISL_407073 Link to comment Share on other sites More sharing options...
niman Posted February 4, 2020 Author Report Share Posted February 4, 2020 Two people, a University of York student and one of their relatives, continue to be treated for coronavirus in the specialist infectious diseases unit at Newcastle Royal Victoria Infirmary. https://www.portsmouth.co.uk/health/coronavirus-hampshire-university-student-returning-china-isolation-after-feeling-unwell-1385126 Link to comment Share on other sites More sharing options...
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