Nineteenth BA.2.86 Sequence from New York USA

[niman]

USA/NY-PRL-230929_81C04/2023

New York City

9/23/23 collection

not at GISAID

NSP3 K1155R
BA.2.86.1

Edited October 8, 2023 by niman

[niman]

map update

https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=40.73690298549984%2C-73.94898865268556&z=13

[niman]

LOCUS       OR645779               29736 bp    RNA     linear   VRL 06-OCT-2023
DEFINITION  Severe acute respiratory syndrome coronavirus 2 isolate
            SARS-CoV-2/human/USA/NY-PRL-230929_81C04/2023 ORF1ab polyprotein
            (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S),
            ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein
            (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b),
            ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10
            protein (ORF10) genes, complete cds.
ACCESSION   OR645779
VERSION     OR645779.1
KEYWORDS    .
SOURCE      Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
  ORGANISM  Severe acute respiratory syndrome coronavirus 2
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae;
            Betacoronavirus; Sarbecovirus; Severe acute respiratory
            syndrome-related coronavirus.
REFERENCE   1  (bases 1 to 29736)
  AUTHORS   Opentrons,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-OCT-2023) Bureau of the Public Health Laboratory, NYC
            DOHMH, 455 First Ave, New York, NY 10016, USA
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: bwa v. 0.7.17-r1188
            Sequencing Technology :: Illumina
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..29736
                     /organism="Severe acute respiratory syndrome coronavirus
                     2"
                     /mol_type="genomic RNA"
                     /isolate="SARS-CoV-2/human/USA/NY-PRL-230929_81C04/2023"
                     /isolation_source="nasopharyngeal swab"
                     /host="Homo sapiens"
                     /db_xref="taxon:2697049"
                     /country="USA: New York"
                     /collection_date="2023-09-21"