niman Posted October 17, 2023 Report Share Posted October 17, 2023 isolate SARS-CoV-2/Human/USA/CA-CDC-LC1064285/2023 collected by Laboratory Corporation of America collection date 2023-09-27 isolation source Nasal Swabs geographic location USA: California host Homo sapiens host disease COVID-19 host sex female host age 56 collection device Nasal Swabs collection method Nasal Swabs purpose of sequencing baseline surveillance (random sampling) host_race Unknown diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.583 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.172 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.768 lineage/clade name BA.2.86 Submission CDC-OAMD; 2023-10-17 Accession: SAMN37852842 ID: 37852842 https://www.ncbi.nlm.nih.gov/biosample/37852842 Link to comment Share on other sites More sharing options...
niman Posted October 17, 2023 Author Report Share Posted October 17, 2023 (edited) USA/CA-CDC-LC1064285/2023 California 9/27/23 collection 56F Spike ins16MPLF, V483DEL NSP3 K1155R NSP2 F319L T3565C (NSP3) NSP6 R252K C11747T (NSP6) C18894T (NSP14) Spike L455S NS7b F19L JN.1 Edited October 17, 2023 by niman Link to comment Share on other sites More sharing options...
niman Posted October 17, 2023 Author Report Share Posted October 17, 2023 map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=37.36234553209381%2C-122.32126480852321&z=9 Link to comment Share on other sites More sharing options...
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