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Partial Zika Sequence From Microcephaly Case Ceara Brazil


niman

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Evandro Chagas Institute has released a full Zika sequence, BeH823339, at Genbank.  

http://www.ncbi.nlm.nih.gov/nuccore/KU729217

This sequence matches a sequence, ZikV|NA|BeH823343|Brazil_Ceara_microcephaly|18-11-2015 cited as from a microcephaly case in Ceara as described here http://virological.org/t/zika-virus-in-the-americas-early-epidemiological-and-genetic-findings/220

Edited by niman
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LOCUS       KU729217               10624 bp    RNA     linear   VRL 26-FEB-2016
DEFINITION  Zika virus isolate BeH823339 polyprotein gene, complete cds.
ACCESSION   KU729217
VERSION     KU729217.1  GI:998491030
KEYWORDS    .
SOURCE      Zika virus
  ORGANISM  Zika virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Flaviviridae; Flavivirus.
REFERENCE   1  (bases 1 to 10624)
  AUTHORS   Faria,N.R., Azevedo,R.S.S., Kraemer,M.U.G., Souza,R., Cunha,M.S.,
            Hill,S.C., Theze,J., Bonsall,M.B., Bodeng,T.A., Rissanen,I.,
            Rocco,I.M., Nogueira,J.S., Maeda,A.Y., Vasami,F.G.S.,
            Macedo,F.L.L., Suzuki,A., Rodrigues,S.G., Cruz,A.C.R., Diniz,B.T.,
            Medeiros,D.B.A., Silva,E.V.P., Henriques,D.F., Travassos da
            Rosa,E.S., Oliveira,C.S., Martins,L.C., Vasconcelos,H.B.,
            Casseb,L.M.N., Simith,D.B., Messina,J., Abade,L., Lourenco,J.,
            Alcantara,L.C., Lima,M., Giovanetti,M., Hay,S.I., Oliveira,R.S.,
            Lemos,P.S., Oliveira,L.F., Lima,C.P.S., Silva,S.P.,
            Vasconcelos,J.M., Cardoso,J.F., Vianez-Junior,J.L.S.G., Mir,D.,
            Bello,G., Delatorre,E., Khan,K., Creatore,M., Coelho,G.E.,
            Oliveira,W.K., Tesh,R., Pybus,O.G., Nunes,M.R.T. and
            Vasconcelos,P.F.C.
  TITLE     Zika virus in the Americas: early epidemiological and genetic
            findings
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 10624)
  AUTHORS   Nunes,M.R.T., Azevedo,R.S.S., Silva,S.P., Vasconcelos,J.M.,
            Cardoso,J.F., Lemos,P.S., Lima,C.P.S., Oliveira,R.S., Faria,N.R.,
            Vianez-Junior,J.L.S.G., Medeiros,D.B.A., Rodrigues,S.G.,
            Diniz,B.T., Silva,E.V.P., Cruz,A.C.R. and Vasconcelos,P.F.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2016) Center for Technological Innovation,
            Evandro Chagas Institute, BR 316, Km 07, s/n, Ananindeua, Para
            67030-000, Brazil
COMMENT     EMAIL: [email protected]
            ##Assembly-Data-START##
            Assembly method: Mira 4.0 and Geneious 7.0
            Sequencing Technology: Ion and 454
            ##Assembly-Data-END##.
FEATURES             Location/Qualifiers
     source          1..10624
                     /organism="Zika virus"
                     /mol_type="genomic RNA"
                     /isolate="BeH823339"
                     /host="Homo sapiens"
                     /db_xref="taxon:64320"
                     /country="Brazil"
                     /collection_date="2015"
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LOCUS       KU729217               10624 bp    RNA     linear   VRL 26-FEB-2016
DEFINITION  Zika virus isolate BeH823339 polyprotein gene, complete cds.
ACCESSION   KU729217
VERSION     KU729217.1  GI:998491030
KEYWORDS    .
SOURCE      Zika virus
  ORGANISM  Zika virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Flaviviridae; Flavivirus.
REFERENCE   1  (bases 1 to 10624)
  AUTHORS   Faria,N.R., Azevedo,R.S.S., Kraemer,M.U.G., Souza,R., Cunha,M.S.,
            Hill,S.C., Theze,J., Bonsall,M.B., Bodeng,T.A., Rissanen,I.,
            Rocco,I.M., Nogueira,J.S., Maeda,A.Y., Vasami,F.G.S.,
            Macedo,F.L.L., Suzuki,A., Rodrigues,S.G., Cruz,A.C.R., Diniz,B.T.,
            Medeiros,D.B.A., Silva,E.V.P., Henriques,D.F., Travassos da
            Rosa,E.S., Oliveira,C.S., Martins,L.C., Vasconcelos,H.B.,
            Casseb,L.M.N., Simith,D.B., Messina,J., Abade,L., Lourenco,J.,
            Alcantara,L.C., Lima,M., Giovanetti,M., Hay,S.I., Oliveira,R.S.,
            Lemos,P.S., Oliveira,L.F., Lima,C.P.S., Silva,S.P.,
            Vasconcelos,J.M., Cardoso,J.F., Vianez-Junior,J.L.S.G., Mir,D.,
            Bello,G., Delatorre,E., Khan,K., Creatore,M., Coelho,G.E.,
            Oliveira,W.K., Tesh,R., Pybus,O.G., Nunes,M.R.T. and
            Vasconcelos,P.F.C.
  TITLE     Zika virus in the Americas: early epidemiological and genetic
            findings
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 10624)
  AUTHORS   Nunes,M.R.T., Azevedo,R.S.S., Silva,S.P., Vasconcelos,J.M.,
            Cardoso,J.F., Lemos,P.S., Lima,C.P.S., Oliveira,R.S., Faria,N.R.,
            Vianez-Junior,J.L.S.G., Medeiros,D.B.A., Rodrigues,S.G.,
            Diniz,B.T., Silva,E.V.P., Cruz,A.C.R. and Vasconcelos,P.F.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2016) Center for Technological Innovation,
            Evandro Chagas Institute, BR 316, Km 07, s/n, Ananindeua, Para
            67030-000, Brazil
COMMENT     EMAIL: [email protected]
            ##Assembly-Data-START##
            Assembly method: Mira 4.0 and Geneious 7.0
            Sequencing Technology: Ion and 454
            ##Assembly-Data-END##.
FEATURES             Location/Qualifiers
     source          1..10624
                     /organism="Zika virus"
                     /mol_type="genomic RNA"
                     /isolate="BeH823339"
                     /host="Homo sapiens"
                     /db_xref="taxon:64320"
                     /country="Brazil"
                     /collection_date="2015"
     CDS             75..10346
                     /codon_start=1
                     /product="polyprotein"
                     /protein_id="AMK49164.1"
                     /db_xref="GI:998491031"
                     /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI
                     RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK
                     RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI
                     MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT
                     LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV
                     IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE
                     LVSTTVSNMAEVRSYCYEATISDIASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG
                     NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET
                     DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF
                     HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTAVVLGSQEGAVHTALAGALEAE
                     MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG
                     TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG
                     EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG
                     AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC
                     SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR
                     MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK
                     SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE
                     CDPAVIGTAVKEKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI
                     EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR
                     GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSVVTA
                     GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA
                     ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT
                     AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL
                     ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE
                     VLTAVGLICALAGGFAKADIEMAGPIAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD
                     AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY
                     VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW
                     HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN
                     IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT
                     QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP
                     TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY
                     IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV
                     PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT
                     KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR
                     RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK
                     VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM
                     EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL
                     PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV
                     LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVXXXXXXXXXXXXXXXXX
                     XXXXXXIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA
                     SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL
                     LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV
                     VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP
                     NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ
                     MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK
                     VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH
                     MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM
                     ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP
                     VKYEEDVNLGSGTRAVVSCAEAPNMKIIGDRIERIRSEHAETWFFDENHPYRTWAYHG
                     SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD
                     PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV
                     EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA
                     RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD
                     TRISRFDLENEALITNQMEKGHRALALAIIKYTYQXXXXXXXXXXXXXXXXXXXXXXX
                     XXXXXXXXVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR
                     LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKXXXXXXXXXXXXXXXXXXXXXXX
                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
                     XXXXLGEEGSTPGVL"
     gap             9708..10310
                     /estimated_length=603
ORIGIN      
        1 gacagttcga gtttgaagcg aaagctagca acagtatcaa caggtttatt tggattgaaa
       61 cgagagttct ggtcatgaaa aacccaaaaa agaaatccgg aggattccgg attgtcaata
      121 tgctaaaacg cggagtagcc cgtgtgagcc cttttggggg cttgaagagg ctgccagccg
      181 gacttctgct gggtcatggg cccatcagga tggtcttggc gattctagcc tttttgagat
      241 tcacggcaat caagccatca ctgggtctca tcaatagatg gggttcagtg gggaaaaaag
      301 aggctatgga aataataaag aagttcaaga aagatctggc tgccatgctg agaataatca
      361 atgctaggaa ggagaagaag agacgaggcg cagatactag tgtcggaatt gttggcctcc
      421 tgctgaccac agctatggca gcggaggtca ctagacgtgg gagtgcatac tatatgtact
      481 tggacagaaa cgatgctggg gaggccatat cttttccaac cacattgggg atgaataagt
      541 gttatataca gatcatggat cttggacaca tgtgtgatgc caccatgagc tatgaatgcc
      601 ctatgctgga tgagggggtg gaaccagatg acgtcgattg ttggtgcaac acgacgtcaa
      661 cttgggttgt gtacggaacc tgccatcaca aaaaaggtga agcacggaga tctagaagag
      721 ctgtgacgct cccctcccat tccactagga agctgcaaac gcggtcgcaa acctggttgg
      781 aatcaagaga atacacaaag cacttgatta gagtcgaaaa ttggatattc aggaaccctg
      841 gcttcgcgtt agcagcagct gccatcgctt ggcttttggg aagctcaacg agccaaaaag
      901 tcatatactt ggtcatgata ctgctgattg ccccggcata cagcatcagg tgcataggag
      961 tcagcaatag ggactttgtg gaaggtatgt caggtgggac ttgggttgat gttgtcttgg
     1021 aacatggagg ttgtgtcacc gtaatggcac aggacaaacc gactgtcgac atagagctgg
     1081 tttcaacaac agtcagcaac atggcggagg taagatccta ctgctatgag gcaacaatat
     1141 cagacatagc ttcggacagc cgctgcccaa cacaaggtga agcctacctt gacaagcaat
     1201 cagacactca atatgtctgc aaaagaacgt tagtggacag aggctgggga aatggatgtg
     1261 gactttttgg caaagggagc ctggtgacat gcgctaagtt tgcatgctcc aagaaaatga
     1321 ccgggaagag catccagcca gagaatctgg agtaccggat aatgctgtca gttcatggct
     1381 cccagcacag tgggatgatc gttaatgaca caggacatga aactgatgag aatagagcga
     1441 aggttgagat aacgcccaat tcaccaagag ccgaagccac cctggggggt tttggaagcc
     1501 taggacttga ttgtgaaccg aggacaggcc ttgacttttc agatttgtat tacttgacta
     1561 tgaataacaa gcactggttg gttcacaagg agtggttcca cgacattcca ttaccttggc
     1621 acgctggggc agacaccgga actccacact ggaacaacaa agaagcactg gtagagttca
     1681 aggacgcaca tgccaaaagg caaactgccg tggttctagg gagtcaagaa ggagcagttc
     1741 acacggccct tgctggagct ctggaggctg agatggatgg tgcaaaggga aggctgtcct
     1801 ctggccactt gaaatgtcgc ctgaaaatgg ataaacttag attgaagggc gtgtcatact
     1861 ccttgtgtac cgcagcgttc acattcacca agatcccggc tgaaacactg cacgggacag
     1921 tcacagtgga ggtacagtac gcagggacag atggaccttg caaggttcca gctcagatgg
     1981 cggtggacat gcaaactctg accccagttg ggaggttgat aaccgctaac cccgtaatca
     2041 ctgaaagcac tgagaactct aagatgatgc tggaacttga tccaccattt ggggactctt
     2101 acattgtcat aggagtcggg gagaagaaga tcacccacca ctggcacagg agtggcagca
     2161 ccattggaaa agcatttgaa gccactgtga gaggtgccaa gagaatggca gtcttgggag
     2221 acacagcctg ggactttgga tcagttggag gcgctctcaa ctcattgggc aagggcatcc
     2281 atcaaatttt tggagcagct ttcaaatcat tgtttggagg aatgtcctgg ttctcacaaa
     2341 tcctcattgg aacgttgctg atgtggttgg gtctgaacac aaagaatgga tctatttccc
     2401 ttatgtgctt ggccttaggg ggagtgttga tcttcttatc cacagccgtc tctgctgatg
     2461 tggggtgctc ggtggacttc tcaaagaagg agacgagatg cggtacaggg gtgttcgtct
     2521 ataacgacgt tgaagcctgg agggacaggt acaagtacca tcctgactcc ccccgtagat
     2581 tggcagcagc agtcaagcaa gcctgggaag atggtatctg cgggatctcc tctgtttcaa
     2641 gaatggaaaa catcatgtgg agatcagtag aaggggagct caatgcaatc ctggaagaga
     2701 atggagttca actgacggtc gttgtgggat ctgtgaaaaa ccccatgtgg agaggtccac
     2761 agagattgcc cgtgcctgtg aacgagctgc cccacggctg gaaggcttgg gggaaatcgt
     2821 acttcgtcag agcagcaaag acaaataaca gctttgtcgt ggatggtgac acactgaagg
     2881 aatgcccact caaacataga gcatggaaca gctttcttgt ggaggatcat gggttcgggg
     2941 tatttcacac tagtgtctgg ctcaaggtta gagaagatta ttcattagag tgtgatccag
     3001 ccgttattgg aacagctgtt aaggaaaagg aggctgtaca cagtgatcta ggctactgga
     3061 ttgagagtga gaagaatgac acatggaggc tgaagagggc ccatctgatc gagatgaaaa
     3121 catgtgaatg gccaaagtcc cacacattgt ggacagatgg aatagaagag agtgatctga
     3181 tcatacccaa gtctttagct gggccactca gccatcacaa taccagagag ggctacagga
     3241 cccaaatgaa agggccatgg cacagtgaag agcttgaaat tcggtttgag gaatgcccag
     3301 gcactaaggt ccacgtggag gaaacatgtg gaacaagagg accatctctg agatcaacca
     3361 ctgcaagcgg aagggtgatc gaggaatggt gctgcaggga gtgcacaatg cccccactgt
     3421 cgttccgggc taaagatggc tgttggtatg gaatggagat aagacccagg aaagaaccag
     3481 aaagcaactt agtaaggtca gtggtgactg caggatcaac tgatcacatg gatcacttct
     3541 cccttggagt gcttgtgatt ctgctcatgg tgcaggaagg gctgaagaag agaatgacca
     3601 caaagatcat cataagcaca tcaatggcag tgctggtagc tatgatcctg ggaggatttt
     3661 caatgagtga cctggctaag cttgcaattt tgatgggtgc caccttcgcg gaaatgaaca
     3721 ctggaggaga tgtagctcat ctggcgctga tagcggcatt caaagtcaga ccagcgttgc
     3781 tggtatcttt catcttcaga gctaattgga caccccgtga aagcatgctg ctggccttgg
     3841 cctcgtgtct tttgcaaact gcgatctccg ccttggaagg cgacctgatg gttctcatca
     3901 atggttttgc tttggcctgg ttggcaatac gagcgatggt tgttccacgc actgataaca
     3961 tcaccttggc aatcctggct gctctgacac cactggcccg gggcacactg cttgtggcgt
     4021 ggagagcagg ccttgctact tgcggggggt ttatgctcct ctctctgaag ggaaaaggca
     4081 gtgtgaagaa gaacttacca tttgtcatgg ccctgggact aaccgctgtg aggctggtcg
     4141 accccatcaa cgtggtggga ctgctgttgc tcacaaggag tgggaagcgg agctggcccc
     4201 ctagcgaagt actcacagct gttggcctga tatgcgcatt ggctggaggg ttcgccaagg
     4261 cagatataga gatggctggg cccatagccg cggtcggtct gctaattgtc agttacgtgg
     4321 tctcaggaaa gagtgtggac atgtacattg aaagagcagg tgacatcaca tgggaaaaag
     4381 atgcggaagt cactggaaac agtccccggc tcgatgtggc gctagatgag agtggtgatt
     4441 tctccctggt ggaggatgac ggtcccccca tgagagagat catactcaag gtggtcctga
     4501 tgaccatctg tggcatgaac ccaatagcca taccctttgc agctggagcg tggtacgtat
     4561 acgtgaagac tggaaaaagg agtggtgctc tatgggatgt gcctgctccc aaggaagtaa
     4621 aaaaggggga gaccacagat ggagtgtaca gagtaatgac tcgtagactg ctaggttcaa
     4681 cacaagttgg agtgggagtt atgcaagagg gggtctttca cactatgtgg cacgtcacaa
     4741 aaggatccgc gctgagaagc ggtgaaggga gacttgatcc atactgggga gatgtcaagc
     4801 aggatctggt gtcatactgt ggtccatgga agctagatgc cgcctgggac gggcacagcg
     4861 aggtgcagct cttggccgtg ccccccggag agagagcgag gaacatccag actctgcccg
     4921 gaatatttaa gacaaaggat ggggacattg gagcggttgc gctggattac ccagcaggaa
     4981 cttcaggatc tccaatccta gacaagtgtg ggagagtgat aggactttat ggcaatgggg
     5041 tcgtgatcaa aaatgggagt tatgttagtg ccatcaccca agggaggagg gaggaagaga
     5101 ctcctgttga gtgcttcgag ccttcgatgc tgaagaagaa gcagctaact gtcttagact
     5161 tgcatcctgg agctgggaaa accaggagag ttcttcctga aatagtccgt gaagccataa
     5221 aaacaagact ccgtactgtg atcttagctc caaccagggt tgtcgctgct gaaatggagg
     5281 aagcccttag agggcttcca gtgcgttata tgacaacagc agtcaatgtc acccactctg
     5341 gaacagaaat cgtcgactta atgtgccatg ccaccttcac ttcacgccta ctacagccaa
     5401 tcagagtccc caactataat ctgtatatta tggatgaggc ccacttcaca gatccctcaa
     5461 gtatagcagc aagaggatac atttcaacaa gggttgagat gggcgaggcg gctgccatct
     5521 tcatgaccgc cacgccacca ggaacccgtg acgcatttcc ggactccaac tcaccaatta
     5581 tggacaccga agtggaagtc ccagagagag cctggagctc aggctttgat tgggtgacgg
     5641 atcattctgg aaaaacagtt tggtttgttc caagcgtgag gaacggcaat gagatcgcag
     5701 cttgtctgac aaaggctgga aaacgggtca tacagctcag cagaaagact tttgagacag
     5761 agttccagaa aacaaaacat caagagtggg actttgtcgt gacaactgac atttcagaga
     5821 tgggcgccaa ctttaaagct gaccgtgtca tagattccag gagatgccta aagccggtca
     5881 tacttgatgg cgagagagtc attctggctg gacccatgcc tgtcacacat gccagcgctg
     5941 cccagaggag ggggcgcata ggcaggaatc ccaacaaacc tggagatgag tatctgtatg
     6001 gaggtgggtg cgcagagact gacgaagacc atgcacactg gcttgaagca agaatgctcc
     6061 ttgacaatat ttacctccaa gatggcctca tagcctcgct ctatcgacct gaggccgaca
     6121 aagtagcagc cattgaggga gagttcaagc ttaggacgga gcaaaggaag acctttgtgg
     6181 aactcatgaa aagaggagat cttcctgttt ggctggccta tcaggttgca tctgccggaa
     6241 taacctacac agatagaaga tggtgctttg atggcacgac caacaacacc ataatggaag
     6301 acagtgtgcc ggcagaggtg tggaccagac acggagagaa aagagtgctc aaaccgaggt
     6361 ggatggacgc cagagtttgt tcagatcatg cggccctgaa gtcattcaag gagtttgccg
     6421 ctgggaaaag aggagcggct tttggagtga tggaagccct gggaacactg ccaggacaca
     6481 tgacagagag attccaggaa gccattgaca acctcgctgt gctcatgcgg gcagagactg
     6541 gaagcaggcc ttacaaagcc gcggcggccc aattgccgga gaccctagag accattatgc
     6601 ttttggggtt gctgggaaca gtctcgctgg gaatcttttt cgtcttgatg aggaacaagg
     6661 gcatagggaa gatgggcttt ggaatggtga ctcttggggc cagcgcatgg ctcatgtggc
     6721 tctcggaaat tgagccagcc agaattgcat gtgtcctcat tgttgtgnnn nnnnnnnnnn
     6781 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnatca
     6841 tcatcatggt agcagtaggt cttctgggct tgattaccgc caatgaactc ggatggttgg
     6901 agagaacaaa gagtgaccta agccatctaa tgggaaggag agaggaggga gcaaccatag
     6961 gattctcaat ggacattgac ctgcggccag cctcagcttg ggccatctat gctgccttga
     7021 caactttcat taccccagcc gtccaacatg cagtgaccac ttcatacaac aactactcct
     7081 taatggcgat ggccacgcaa gctggagtgt tgtttggtat gggcaaaggg atgccattct
     7141 acgcatggga ctttggagtc ccgctgctaa tgataggttg ctactcacaa ttaacacccc
     7201 tgaccctaat agtggccatc attttgctcg tggcgcacta catgtacttg atcccagggc
     7261 tgcaggcagc agctgcgcgt gctgcccaga agagaacggc agctggcatc atgaagaacc
     7321 ctgttgtgga tggaatagtg gtgactgaca ttgacacaat gacaattgac ccccaagtgg
     7381 agaaaaagat gggacaggtg ctactcatag cagtagccgt ctccagcgcc atactgtcgc
     7441 ggaccgcctg ggggtggggg gaggctgggg ccctgattac agccgcaact tccactttgt
     7501 gggaaggctc tccgaacaag tactggaact cctctacagc cacttcactg tgtaacattt
     7561 ttaggggaag ttacttggct ggagcttctc taatctacac agtaacaaga aacgctggct
     7621 tggtcaagag acgtgggggt ggaacaggag agaccctggg agagaaatgg aaggcccgct
     7681 tgaaccagat gtcggccctg gagttctact cctacaaaaa gtcaggcatc accgaggtgt
     7741 gcagagaaga ggcccgccgc gccctcaagg acggtgtggc aacgggaggc catgctgtgt
     7801 cccgaggaag tgcaaagctg agatggttgg tggagcgggg atacctgcag ccctatggaa
     7861 aggtcattga tcttggatgt ggcagagggg gctggagtta ctacgccgcc accatccgca
     7921 aagttcaaga agtgaaagga tacacaaaag gaggccctgg tcatgaagaa cccgtgttgg
     7981 tgcaaagcta tgggtggaac atagtccgtc tcaagagtgg ggtggacgtc tttcatatgg
     8041 cggctgagcc gtgtgacacg ttgctgtgtg acataggtga gtcatcatct agtcctgaag
     8101 tggaagaagc acggacgctc agagtcctct ccatggtggg ggattggctt gaaaaaagac
     8161 caggagcctt ttgtataaaa gtgttgtgcc catacaccag cactatgatg gaaaccttgg
     8221 agcgactgca gcgtaggtat gggggaggac tggtcagagt gccactctcc cgcaactcta
     8281 cacatgagat gtactgggtc tctggagcga aaagcaacac cataaaaagt gtgtccacca
     8341 cgagccagct cctcttgggg cgcatggacg ggcctaggag gccagtgaaa tatgaggagg
     8401 atgtgaatct cggctctggc acgcgggctg tggtaagctg cgctgaagct cccaacatga
     8461 agatcattgg tgaccgcatt gaaaggatcc gcagtgagca cgcggaaacg tggttctttg
     8521 acgagaacca cccatatagg acatgggctt accatggaag ctatgaggcc cccacacaag
     8581 ggtcagcgtc ctctctaata aacggggttg tcaggctcct gtcaaaaccc tgggatgtgg
     8641 tgactggagt cacaggaata gccatgaccg acaccacacc gtatggtcag caaagagttt
     8701 tcaaggaaaa agtggacact agggtgccag acccccaaga aggcactcgt caggttatga
     8761 gcatggtctc ttcctggttg tggaaagagc taggcaaaca caaacggcca cgagtctgta
     8821 ccaaagaaga gttcatcaac aaggttcgta gcaatgcagc attaggggca atatttgaag
     8881 aggaaaaaga gtggaagact gcagtggagg ctgtgaacga tccaaggttc tgggctctag
     8941 tggacaagga aagagagcac cacctgagag gagagtgcca gagttgtgtg tacaacatga
     9001 tgggaaaaag agaaaagaaa caaggggaat ttggaaaggc caagggcagc cgcgccatct
     9061 ggtatatgtg gctaggggct agatttctag agttcgaagc ccttggattc ttgaacgagg
     9121 atcactggat ggggagagag aactcaggag gtggtgttga agggctggga ttacaaagac
     9181 tcggatatgt cctagaagag atgagtcgca taccaggagg aaggatgtat gcagatgaca
     9241 ctgctggctg ggacacccgc atcagcaggt ttgatctgga gaatgaagct ctaatcacca
     9301 accaaatgga gaaagggcac agggccttgg cattggccat aatcaagtac acataccaan
     9361 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     9421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn ttgtcactta cgctcttaac acatttacca
     9481 acctagtggt gcaactcatt cggaatatgg aggctgagga agttctagag atgcaagact
     9541 tgtggctgct gcggaggtca gagaaagtga ccaactggtt gcagagcaac ggatgggata
     9601 ggctcaaacg aatggcagtc agtggagatg attgcgttgt gaagccaatt gatgataggt
     9661 ttgcacatgc cctcaggttc ttgaatgata tgggaaaagt taggaag             
          [gap 603 bp]    Expand Ns
    10311                                                        ttgggtgaag
    10321 aagggtctac acctggagtg ctgtaagcac caatcttaat gttgtcaggc ctgctagtca
    10381 gccacagctt gggaaagctg tgcagcctgt gaccccccag gagaagctgg gaaaccaagc
    10441 ctatagtcag gccgagaacg ccatggcacg gaagaagcca tgctgcctgt gagcccctca
    10501 gaggacactg agtcaaaaaa ccccacgcgc ttggaggcgc aggatgggaa aagaaggtgg
    10561 cgaccttccc cacccttcaa tctggggcct gaactggaga tcagctgtgg atctccagaa
    10621 gagg
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Sequences producing significant alignments:

Select:AllNone Selected:0

Sequences producing significant alignments:
Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccession
1207112071100%0.0100%KU729217.1
1199011990100%0.099%KU509998.1
1198411984100%0.099%KJ776791.1
1198111981100%0.099%KU729218.1
1198111981100%0.099%KU707826.1
1198111981100%0.099%KU365779.1
1198111981100%0.099%KU321639.1
1196611966100%0.099%KU527068.1
1196611966100%0.099%KU365780.1
1196611966100%0.099%KU365777.1
1195411954100%0.099%KU501217.1
1195411954100%0.099%KU501216.1
1194811948100%0.099%KU497555.1
1194811948100%0.099%KU365778.1
1194411944100%0.099%KU501215.1
1193911939100%0.099%KU647676.1
1193511935100%0.099%KU312312.1
1192611926100%0.099%KU761564.1
1191711917100%0.099%KU740184.1
1184011840100%0.099%KU744693.1
1175011750100%0.099%KU681081.3
1156211562100%0.098%JN860885.1
114591145998%0.099%KF993678.1
1142011420100%0.098%EU545988.1
1135811358100%0.098%KU681082.3
1078910789100%0.096%HQ234499.1
87808780100%0.089%KF268948.1
87728772100%0.089%KF268950.1
87388738100%0.089%KF383115.1
87368736100%0.089%KF268949.1
87258725100%0.089%KU720415.1
87258725100%0.089%HQ234498.1
87168716100%0.089%KF383121.1
87168716100%0.089%KF383119.1
87068706100%0.089%DQ859059.1
87028702100%0.089%LC002520.1
86688668100%0.089%AY632535.2
86448644100%0.089%KF383117.1
86308630100%0.089%HQ234501.1
85928592100%0.088%KF383116.1
85798579100%0.088%HQ234500.1
84308498100%0.088%KF383118.1
73537353100%0.084%KF383120.1
4962496241%0.099%KU312314.1
4935493541%0.099%KU312313.1
4628462838%0.099%KU646828.1
4619461938%0.099%KU646827.1
3422342228%0.099%KU312315.1
3214321427%0.099%KU740199.1
2682268222%0.099%KJ634273.1
2042204217%0.099%KU686218.1
1332253494%0.068%DQ859064.1
113311339%0.099%KU758878.1
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LOCUS       KU729217               10645 bp    RNA     linear   VRL 02-MAR-2016
DEFINITION  Zika virus isolate BeH823339 polyprotein gene, complete cds.
ACCESSION   KU729217
VERSION     KU729217.2  GI:1002394024
KEYWORDS    .
SOURCE      Zika virus
  ORGANISM  Zika virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Flaviviridae; Flavivirus.
REFERENCE   1  (bases 1 to 10645)
  AUTHORS   Faria,N.R., Azevedo,R.S.S., Kraemer,M.U.G., Souza,R., Cunha,M.S.,
            Hill,S.C., Theze,J., Bonsall,M.B., Bodeng,T.A., Rissanen,I.,
            Rocco,I.M., Nogueira,J.S., Maeda,A.Y., Vasami,F.G.S.,
            Macedo,F.L.L., Suzuki,A., Rodrigues,S.G., Cruz,A.C.R., Diniz,B.T.,
            Medeiros,D.B.A., Silva,E.V.P., Henriques,D.F., Travassos da
            Rosa,E.S., Oliveira,C.S., Martins,L.C., Vasconcelos,H.B.,
            Casseb,L.M.N., Simith,D.B., Messina,J., Abade,L., Lourenco,J.,
            Alcantara,L.C., Lima,M., Giovanetti,M., Hay,S.I., Oliveira,R.S.,
            Lemos,P.S., Oliveira,L.F., Lima,C.P.S., Silva,S.P.,
            Vasconcelos,J.M., Cardoso,J.F., Vianez-Junior,J.L.S.G., Mir,D.,
            Bello,G., Delatorre,E., Khan,K., Creatore,M., Coelho,G.E.,
            Oliveira,W.K., Tesh,R., Pybus,O.G., Nunes,M.R.T. and
            Vasconcelos,P.F.C.
  TITLE     Zika virus in the Americas: early epidemiological and genetic
            findings
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 10645)
  AUTHORS   Nunes,M.R.T., Azevedo,R.S.S., Silva,S.P., Vasconcelos,J.M.,
            Cardoso,J.F., Lemos,P.S., Lima,C.P.S., Oliveira,R.S., Faria,N.R.,
            Vianez-Junior,J.L.S.G., Medeiros,D.B.A., Rodrigues,S.G.,
            Diniz,B.T., Silva,E.V.P., Cruz,A.C.R. and Vasconcelos,P.F.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2016) Center for Technological Innovation,
            Evandro Chagas Institute, BR 316, Km 07, s/n, Ananindeua, Para
            67030-000, Brazil
REFERENCE   3  (bases 1 to 10645)
  AUTHORS   Nunes,M.R.T., Azevedo,R.S.S., Silva,S.P., Vasconcelos,J.M.,
            Cardoso,J.F., Lemos,P.S., Lima,C.P.S., Oliveira,R.S., Faria,N.R.,
            Vianez-Junior,J.L.S.G., Medeiros,D.B.A., Rodrigues,S.G.,
            Diniz,B.T., Silva,E.V.P., Cruz,A.C.R. and Vasconcelos,P.F.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-MAR-2016) Center for Technological Innovation,
            Evandro Chagas Institute, BR 316, Km 07, s/n, Ananindeua, Para
            67030-000, Brazil
  REMARK    Sequence update by submitter
COMMENT     On Mar 2, 2016 this sequence version replaced gi:998491030.
            
            ##Assembly-Data-START##
            Assembly Method       :: Mira 4.0 and Geneious 7.0
            Sequencing Technology :: Ion and 454
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..10645
                     /organism="Zika virus"
                     /mol_type="genomic RNA"
                     /isolate="BeH823339"
                     /host="Homo sapiens"
                     /db_xref="taxon:64320"
                     /country="Brazil"
                     /collection_date="2015"
     CDS             76..10347
                     /codon_start=1
                     /product="polyprotein"
                     /protein_id="AMK49164.2"
                     /db_xref="GI:1002394025"
                     /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI
                     RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK
                     RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI
                     MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT
                     LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV
                     IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE
                     LVSTTVSNMAEVRSYCYEATISDIASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG
                     NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET
                     DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF
                     HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTAVVLGSQEGAVHTALAGALEAE
                     MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG
                     TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG
                     EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG
                     AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC
                     SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR
                     MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK
                     SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE
                     CDPAVIGTAVKEKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI
                     EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR
                     GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSVVTA
                     GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA
                     ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT
                     AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL
                     ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE
                     VLTAVGLICALAGGFAKADIEMAGPIAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD
                     AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY
                     VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW
                     HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN
                     IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT
                     QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP
                     TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY
                     IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV
                     PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT
                     KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR
                     RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK
                     VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM
                     EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL
                     PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV
                     LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP
                     QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA
                     SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL
                     LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV
                     VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP
                     NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ
                     MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK
                     VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH
                     MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM
                     ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP
                     VKYEEDVNLGSGTRAVVSCAEAPNMKIIGDRIERIRSEHAETWFFDENHPYRTWAYHG
                     SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD
                     PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV
                     EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA
                     RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD
                     TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ
                     DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR
                     LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH
                     FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR
                     DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT
                     PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST
                     QVRYLGEEGSTPGVL"
ORIGIN      
        1 gttcgagttt gaagcgaaag ctagcaacag tatcaacagg ttttattttg gatttggaaa
       61 cgagagtttc tggtcatgaa aaacccaaaa aagaaatccg gaggattccg gattgtcaat
      121 atgctaaaac gcggagtagc ccgtgtgagc ccctttgggg gcttgaagag gctgccagcc
      181 ggacttctgc tgggtcatgg gcccatcagg atggtcttgg cgattctagc ctttttgaga
      241 ttcacggcaa tcaagccatc actgggtctc atcaatagat ggggttcagt ggggaaaaaa
      301 gaggctatgg aaataataaa gaagttcaag aaagatctgg ctgccatgct gagaataatc
      361 aatgctagga aggagaagaa gagacgaggc gcagatacta gtgtcggaat tgttggcctc
      421 ctgctgacca cagctatggc agcggaggtc actagacgtg ggagtgcata ctatatgtac
      481 ttggacagaa acgatgctgg ggaggccata tcttttccaa ccacattggg gatgaataag
      541 tgttatatac agatcatgga tcttggacac atgtgtgatg ccaccatgag ctatgaatgc
      601 cctatgctgg atgagggggt ggaaccagat gacgtcgatt gttggtgcaa cacgacgtca
      661 acttgggttg tgtacggaac ctgccatcac aaaaaaggtg aagcacggag atctagaaga
      721 gctgtgacgc tcccctccca ttccactagg aagctgcaaa cgcggtcgca aacctggttg
      781 gaatcaagag aatacacaaa gcacttgatt agagtcgaaa attggatatt caggaaccct
      841 ggcttcgcgt tagcagcagc tgccatcgct tggcttttgg gaagctcaac gagccaaaaa
      901 gtcatatact tggtcatgat actgctgatt gccccggcat acagcatcag gtgcatagga
      961 gtcagcaata gggactttgt ggaaggtatg tcaggtggga cttgggttga tgttgtcttg
     1021 gaacatggag gttgtgtcac cgtaatggca caggacaaac cgactgtcga catagagctg
     1081 gtttcaacaa cagtcagcaa catggcggag gtaagatcct actgctatga ggcaacaata
     1141 tcagacatag cttcggacag ccgctgccca acacaaggtg aagcctacct tgacaagcaa
     1201 tcagacactc aatatgtctg caaaagaacg ttagtggaca gaggctgggg aaatggatgt
     1261 ggactttttg gcaaagggag cctggtgaca tgcgctaagt ttgcatgctc caagaaaatg
     1321 accgggaaga gcatccagcc agagaatctg gagtaccgga taatgctgtc agttcatggc
     1381 tcccagcaca gtgggatgat cgttaatgac acaggacatg aaactgatga gaatagagcg
     1441 aaggttgaga taacgcccaa ttcaccaaga gccgaagcca ccctgggggg ttttggaagc
     1501 ctaggacttg attgtgaacc gaggacaggc cttgactttt cagatttgta ttacttgact
     1561 atgaataaca agcactggtt ggttcacaag gagtggttcc acgacattcc attaccttgg
     1621 cacgctgggg cagacaccgg aactccacac tggaacaaca aagaagcact ggtagagttc
     1681 aaggacgcac atgccaaaag gcaaactgcc gtggttctag ggagtcaaga aggagcagtt
     1741 cacacggccc ttgctggagc tctggaggct gagatggatg gtgcaaaggg aaggctgtcc
     1801 tctggccact tgaaatgtcg cctgaaaatg gataaactta gattgaaggg cgtgtcatac
     1861 tccttgtgta ccgcagcgtt cacattcacc aagatcccgg ctgaaacact gcacgggaca
     1921 gtcacagtgg aggtacagta cgcagggaca gatggacctt gcaaggttcc agctcagatg
     1981 gcggtggaca tgcaaactct gaccccagtt gggaggttga taaccgctaa ccccgtaatc
     2041 actgaaagca ctgagaactc taagatgatg ctggaacttg atccaccatt tggggactct
     2101 tacattgtca taggagtcgg ggagaagaag atcacccacc actggcacag gagtggcagc
     2161 accattggaa aagcatttga agccactgtg agaggtgcca agagaatggc agtcttggga
     2221 gacacagcct gggactttgg atcagttgga ggcgctctca actcattggg caagggcatc
     2281 catcaaattt ttggagcagc tttcaaatca ttgtttggag gaatgtcctg gttctcacaa
     2341 atcctcattg gaacgttgct gatgtggttg ggtctgaaca caaagaatgg atctatttcc
     2401 cttatgtgct tggccttagg gggagtgttg atcttcttat ccacagccgt ctctgctgat
     2461 gtggggtgct cggtggactt ctcaaagaag gagacgagat gcggtacagg ggtgttcgtc
     2521 tataacgacg ttgaagcctg gagggacagg tacaagtacc atcctgactc cccccgtaga
     2581 ttggcagcag cagtcaagca agcctgggaa gatggtatct gcgggatctc ctctgtttca
     2641 agaatggaaa acatcatgtg gagatcagta gaaggggagc tcaatgcaat cctggaagag
     2701 aatggagttc aactgacggt cgttgtggga tctgtgaaaa accccatgtg gagaggtcca
     2761 cagagattgc ccgtgcctgt gaacgagctg ccccacggct ggaaggcttg ggggaaatcg
     2821 tacttcgtca gagcagcaaa gacaaataac agctttgtcg tggatggtga cacactgaag
     2881 gaatgcccac tcaaacatag agcatggaac agctttcttg tggaggatca tgggttcggg
     2941 gtatttcaca ctagtgtctg gctcaaggtt agagaagatt attcattaga gtgtgatcca
     3001 gccgttattg gaacagctgt taaggaaaag gaggctgtac acagtgatct aggctactgg
     3061 attgagagtg agaagaatga cacatggagg ctgaagaggg cccatctgat cgagatgaaa
     3121 acatgtgaat ggccaaagtc ccacacattg tggacagatg gaatagaaga gagtgatctg
     3181 atcataccca agtctttagc tgggccactc agccatcaca ataccagaga gggctacagg
     3241 acccaaatga aagggccatg gcacagtgaa gagcttgaaa ttcggtttga ggaatgccca
     3301 ggcactaagg tccacgtgga ggaaacatgt ggaacaagag gaccatctct gagatcaacc
     3361 actgcaagcg gaagggtgat cgaggaatgg tgctgcaggg agtgcacaat gcccccactg
     3421 tcgttccggg ctaaagatgg ctgttggtat ggaatggaga taagacccag gaaagaacca
     3481 gaaagcaact tagtaaggtc agtggtgact gcaggatcaa ctgatcacat ggatcacttc
     3541 tcccttggag tgcttgtgat tctgctcatg gtgcaggaag ggctgaagaa gagaatgacc
     3601 acaaagatca tcataagcac atcaatggca gtgctggtag ctatgatcct gggaggattt
     3661 tcaatgagtg acctggctaa gcttgcaatt ttgatgggtg ccaccttcgc ggaaatgaac
     3721 actggaggag atgtagctca tctggcgctg atagcggcat tcaaagtcag accagcgttg
     3781 ctggtatctt tcatcttcag agctaattgg acaccccgtg aaagcatgct gctggccttg
     3841 gcctcgtgtc ttttgcaaac tgcgatctcc gccttggaag gcgacctgat ggttctcatc
     3901 aatggttttg ctttggcctg gttggcaata cgagcgatgg ttgttccacg cactgataac
     3961 atcaccttgg caatcctggc tgctctgaca ccactggccc ggggcacact gcttgtggcg
     4021 tggagagcag gccttgctac ttgcgggggg tttatgctcc tctctctgaa gggaaaaggc
     4081 agtgtgaaga agaacttacc atttgtcatg gccctgggac taaccgctgt gaggctggtc
     4141 gaccccatca acgtggtggg actgctgttg ctcacaagga gtgggaagcg gagctggccc
     4201 cctagcgaag tactcacagc tgttggcctg atatgcgcat tggctggagg gttcgccaag
     4261 gcagatatag agatggctgg gcccatagcc gcggtcggtc tgctaattgt cagttacgtg
     4321 gtctcaggaa agagtgtgga catgtacatt gaaagagcag gtgacatcac atgggaaaaa
     4381 gatgcggaag tcactggaaa cagtccccgg ctcgatgtgg cgctagatga gagtggtgat
     4441 ttctccctgg tggaggatga cggtcccccc atgagagaga tcatactcaa ggtggtcctg
     4501 atgaccatct gtggcatgaa cccaatagcc ataccctttg cagctggagc gtggtacgta
     4561 tacgtgaaga ctggaaaaag gagtggtgct ctatgggatg tgcctgctcc caaggaagta
     4621 aaaaaggggg agaccacaga tggagtgtac agagtaatga ctcgtagact gctaggttca
     4681 acacaagttg gagtgggagt tatgcaagag ggggtctttc acactatgtg gcacgtcaca
     4741 aaaggatccg cgctgagaag cggtgaaggg agacttgatc catactgggg agatgtcaag
     4801 caggatctgg tgtcatactg tggtccatgg aagctagatg ccgcctggga cgggcacagc
     4861 gaggtgcagc tcttggccgt gccccccgga gagagagcga ggaacatcca gactctgccc
     4921 ggaatattta agacaaagga tggggacatt ggagcggttg cgctggatta cccagcagga
     4981 acttcaggat ctccaatcct agacaagtgt gggagagtga taggacttta tggcaatggg
     5041 gtcgtgatca aaaatgggag ttatgttagt gccatcaccc aagggaggag ggaggaagag
     5101 actcctgttg agtgcttcga gccttcgatg ctgaagaaga agcagctaac tgtcttagac
     5161 ttgcatcctg gagctgggaa aaccaggaga gttcttcctg aaatagtccg tgaagccata
     5221 aaaacaagac tccgtactgt gatcttagct ccaaccaggg ttgtcgctgc tgaaatggag
     5281 gaagccctta gagggcttcc agtgcgttat atgacaacag cagtcaatgt cacccactct
     5341 ggaacagaaa tcgtcgactt aatgtgccat gccaccttca cttcacgcct actacagcca
     5401 atcagagtcc ccaactataa tctgtatatt atggatgagg cccacttcac agatccctca
     5461 agtatagcag caagaggata catttcaaca agggttgaga tgggcgaggc ggctgccatc
     5521 ttcatgaccg ccacgccacc aggaacccgt gacgcatttc cggactccaa ctcaccaatt
     5581 atggacaccg aagtggaagt cccagagaga gcctggagct caggctttga ttgggtgacg
     5641 gatcattctg gaaaaacagt ttggtttgtt ccaagcgtga ggaacggcaa tgagatcgca
     5701 gcttgtctga caaaggctgg aaaacgggtc atacagctca gcagaaagac ttttgagaca
     5761 gagttccaga aaacaaaaca tcaagagtgg gactttgtcg tgacaactga catttcagag
     5821 atgggcgcca actttaaagc tgaccgtgtc atagattcca ggagatgcct aaagccggtc
     5881 atacttgatg gcgagagagt cattctggct ggacccatgc ctgtcacaca tgccagcgct
     5941 gcccagagga gggggcgcat aggcaggaat cccaacaaac ctggagatga gtatctgtat
     6001 ggaggtgggt gcgcagagac tgacgaagac catgcacact ggcttgaagc aagaatgctc
     6061 cttgacaata tttacctcca agatggcctc atagcctcgc tctatcgacc tgaggccgac
     6121 aaagtagcag ccattgaggg agagttcaag cttaggacgg agcaaaggaa gacctttgtg
     6181 gaactcatga aaagaggaga tcttcctgtt tggctggcct atcaggttgc atctgccgga
     6241 ataacctaca cagatagaag atggtgcttt gatggcacga ccaacaacac cataatggaa
     6301 gacagtgtgc cggcagaggt gtggaccaga cacggagaga aaagagtgct caaaccgagg
     6361 tggatggacg ccagagtttg ttcagatcat gcggccctga agtcattcaa ggagtttgcc
     6421 gctgggaaaa gaggagcggc ttttggagtg atggaagccc tgggaacact gccaggacac
     6481 atgacagaga gattccagga agccattgac aacctcgctg tgctcatgcg ggcagagact
     6541 ggaagcaggc cttacaaagc cgcggcggcc caattgccgg agaccctaga gaccattatg
     6601 cttttggggt tgctgggaac agtctcgctg ggaatctttt tcgtcttgat gaggaacaag
     6661 ggcataggga agatgggctt tggaatggtg actcttgggg ccagcgcatg gctcatgtgg
     6721 ctctcggaaa ttgagccagc cagaattgca tgtgtcctca ttgttgtgtt cctattgctg
     6781 gtggtgctca tacctgagcc agaaaagcaa agatctcccc aggacaacca aatggcaatc
     6841 atcatcatgg tagcagtagg tcttctgggc ttgattaccg ccaatgaact cggatggttg
     6901 gagagaacaa agagtgacct aagccatcta atgggaagga gagaggaggg agcaaccata
     6961 ggattctcaa tggacattga cctgcggcca gcctcagctt gggccatcta tgctgccttg
     7021 acaactttca ttaccccagc cgtccaacat gcagtgacca cttcatacaa caactactcc
     7081 ttaatggcga tggccacgca agctggagtg ttgtttggta tgggcaaagg gatgccattc
     7141 tacgcatggg actttggagt cccgctgcta atgataggtt gctactcaca attaacaccc
     7201 ctgaccctaa tagtggccat cattttgctc gtggcgcact acatgtactt gatcccaggg
     7261 ctgcaggcag cagctgcgcg tgctgcccag aagagaacgg cagctggcat catgaagaac
     7321 cctgttgtgg atggaatagt ggtgactgac attgacacaa tgacaattga cccccaagtg
     7381 gagaaaaaga tgggacaggt gctactcata gcagtagccg tctccagcgc catactgtcg
     7441 cggaccgcct gggggtgggg ggaggctggg gccctgatta cagccgcaac ttccactttg
     7501 tgggaaggct ctccgaacaa gtactggaac tcctctacag ccacttcact gtgtaacatt
     7561 tttaggggaa gttacttggc tggagcttct ctaatctaca cagtaacaag aaacgctggc
     7621 ttggtcaaga gacgtggggg tggaacagga gagaccctgg gagagaaatg gaaggcccgc
     7681 ttgaaccaga tgtcggccct ggagttctac tcctacaaaa agtcaggcat caccgaggtg
     7741 tgcagagaag aggcccgccg cgccctcaag gacggtgtgg caacgggagg ccatgctgtg
     7801 tcccgaggaa gtgcaaagct gagatggttg gtggagcggg gatacctgca gccctatgga
     7861 aaggtcattg atcttggatg tggcagaggg ggctggagtt actacgccgc caccatccgc
     7921 aaagttcaag aagtgaaagg atacacaaaa ggaggccctg gtcatgaaga acccgtgttg
     7981 gtgcaaagct atgggtggaa catagtccgt ctcaagagtg gggtggacgt ctttcatatg
     8041 gcggctgagc cgtgtgacac gttgctgtgt gacataggtg agtcatcatc tagtcctgaa
     8101 gtggaagaag cacggacgct cagagtcctc tccatggtgg gggattggct tgaaaaaaga
     8161 ccaggagcct tttgcataaa agtgttgtgc ccatacacca gcactatgat ggaaaccttg
     8221 gagcgactgc agcgtaggta tgggggagga ctggtcagag tgccactctc ccgcaactct
     8281 acacatgaga tgtactgggt ctctggagcg aaaagcaaca ccataaaaag tgtgtccacc
     8341 acgagccagc tcctcttggg gcgcatggac gggcctagga ggccagtgaa atatgaggag
     8401 gatgtgaatc tcggctctgg cacgcgggct gtggtaagct gcgctgaagc tcccaacatg
     8461 aagatcattg gtgaccgcat tgaaaggatc cgcagtgagc acgcggaaac gtggttcttt
     8521 gacgagaacc acccatatag gacatgggct taccatggaa gctatgaggc ccccacacaa
     8581 gggtcagcgt cctctctaat aaacggggtt gtcaggctcc tgtcaaaacc ctgggatgtg
     8641 gtgactggag tcacaggaat agccatgacc gacaccacac cgtatggtca gcaaagagtt
     8701 ttcaaggaaa aagtggacac tagggtgcca gacccccaag aaggcactcg tcaggttatg
     8761 agcatggtct cttcctggtt gtggaaagag ctaggcaaac acaaacggcc acgagtctgt
     8821 accaaagaag agttcatcaa caaggttcgt agcaatgcag cattaggggc aatatttgaa
     8881 gaggaaaaag agtggaagac tgcagtggag gctgtgaacg atccaaggtt ctgggctcta
     8941 gtggacaagg aaagagagca ccacctgaga ggagagtgcc agagttgtgt gtacaacatg
     9001 atgggaaaaa gagaaaagaa acaaggggaa tttggaaagg ccaagggcag ccgcgccatc
     9061 tggtatatgt ggctaggggc tagatttcta gagttcgaag cccttggatt cttgaacgag
     9121 gatcactgga tggggagaga gaactcagga ggtggtgttg aagggctggg attacaaaga
     9181 ctcggatatg tcctagaaga gatgagtcgc ataccaggag gaaggatgta tgcagatgac
     9241 actgctggct gggacacccg catcagcagg tttgatctgg agaatgaagc tctaatcacc
     9301 aaccaaatgg agaaagggca cagggccttg gcactggcca taatcaagta cacataccaa
     9361 aacaaagtgg taaaggtcct tagaccagct gaaaaaggga aaacagttat ggacattatt
     9421 tcgagacaag accaaagggg gagcggacaa gttgtcactt acgctcttaa cacatttacc
     9481 aacctagtgg tgcaactcat tcggaatatg gaggctgagg aagttctaga gatgcaagac
     9541 ttgtggctgc tgcggaggtc agagaaagtg accaactggt tgcagagcaa cggatgggat
     9601 aggctcaaac gaatggcagt cagtggagat gattgcgttg tgaagccaat tgatgatagg
     9661 tttgcacatg ccctcaggtt cttgaatgat atgggaaaag ttaggaagga cacacaagag
     9721 tggaaaccct caactggatg ggacaactgg gaagaagttc cgttttgctc ccaccacttc
     9781 aacaagctcc atctcaagga cgggaggtcc attgtggttc cctgccgcca ccaagatgaa
     9841 ctgattggcc gggcccgcgt ctctccaggg gcgggatgga gcatccggga gactgcttgc
     9901 ctagcaaaat catatgcgca aatgtggcag ctcctttatt tccacagaag ggacctccga
     9961 ctgatggcca atgccatttg ttcatctgtg ccagttgact gggttccaac tgggagaact
    10021 acctggtcaa tccatggaaa gggagaatgg atgaccactg aagacatgct tgtggtgtgg
    10081 aacagagtgt ggattgagga gaacgaccac atggaagaca agaccccagt tacgaaatgg
    10141 acagacattc cctatttggg aaaaagggaa gacttgtggt gtggatctct catagggcac
    10201 agaccgcgca ccacctgggc tgagaacatt aaaaacacag tcaacatggt gcgcaggatc
    10261 ataggtgatg aagaaaagta catggactac ctatccaccc aagttcgcta cttgggtgaa
    10321 gaagggtcta cacctggagt gctgtaagca ccaatcttaa tgttgtcagg cctgctagtc
    10381 agccacagct tggggaaagc tgtgcagcct gtgacccccc caggagaagc tgggaaacca
    10441 agcctatagt caggccgaga acgccatggc acggaagaag ccatgctgcc tgtgagcccc
    10501 tcagaggaca ctgagtcaaa aaaccccacg cgcttggagg cgcaggatgg gaaaagaagg
    10561 tggcgacctt ccccaccctt caatctgggg cctgaactgg agatcagctg tggatctcca
    10621 gaagagggac tagtggttag aggag
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Sequences producing significant alignments:

Select:AllNone Selected:0

Sequences producing significant alignments:
Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccession
1839318393100%0.099%KU509998.1
1839018390100%0.099%KJ776791.1
1838118381100%0.099%KU321639.1
1837218372100%0.099%KU729218.1
1837218372100%0.099%KU707826.1
1837218372100%0.099%KU527068.1
1837218372100%0.099%KU365779.1
1835718357100%0.099%KU501217.1
1835718357100%0.099%KU365780.1
183541835499%0.099%KU497555.1
1835418354100%0.099%KU647676.1
1835418354100%0.099%KU501216.1
1835418354100%0.099%KU365777.1
1833918339100%0.099%KU365778.1
1833918339100%0.099%KU312312.1
1833018330100%0.099%KU501215.1
1831218312100%0.099%KU761564.1
1830318303100%0.099%KU740184.1
1814618146100%0.099%KU744693.1
1804718047100%0.099%KU681081.3
177391773999%0.098%JN860885.1
176941769498%0.099%KF993678.1
1758517585100%0.098%EU545988.1
1743817438100%0.098%KU681082.3
164151641599%0.095%HQ234499.1
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Updated mayches

Sequences producing significant alignments:

Select:AllNone Selected:0

Sequences producing significant alignments:
Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccession
1852518525100%0.0100%KU729217.2
1839318393100%0.099%KU509998.1
1839018390100%0.099%KJ776791.1
1838118381100%0.099%KU321639.1
1837218372100%0.099%KU729218.1
1837218372100%0.099%KU707826.1
1837218372100%0.099%KU527068.1
1837218372100%0.099%KU365779.1
1835718357100%0.099%KU501217.1
1835718357100%0.099%KU365780.1
183541835499%0.099%KU497555.1
1835418354100%0.099%KU647676.1
1835418354100%0.099%KU501216.1
1835418354100%0.099%KU365777.1
1833918339100%0.099%KU820897.1
1833918339100%0.099%KU365778.1
1833918339100%0.099%KU312312.1
1833018330100%0.099%KU501215.1
1831218312100%0.099%KU761564.1
1830318303100%0.099%KU740184.1
1828518285100%0.099%KU820899.1
1814618146100%0.099%KU744693.1
1804718047100%0.099%KU681081.3
177391773999%0.098%JN860885.1
176941769498%0.099%KF993678.1
1758517585100%0.098%EU545988.1
1743817438100%0.098%KU681082.3
164151641599%0.095%HQ234499.1
1328413284100%0.089%KF268948.1
1327913279100%0.089%KF383115.1
1327713277100%0.089%KF268950.1
1327513275100%0.089%KF268949.1
1327213272100%0.089%KU720415.1
132661326699%0.089%HQ234498.1
1325713257100%0.089%DQ859059.1
1325413254100%0.089%KF383119.1
1325013250100%0.089%LC002520.1
1322113221100%0.089%KF383116.1
132051320599%0.089%HQ234501.1
1319113191100%0.088%AY632535.2
1314213142100%0.088%KF383117.1
131351313599%0.088%HQ234500.1
1293112999100%0.088%KF383118.1
128521285297%0.089%KF383121.1
108301083097%0.084%KF383120.1
4967496727%0.099%KU312314.1
4940494027%0.099%KU312313.1
4628462825%0.099%KU646828.1
4619461925%0.099%KU646827.1
3422342218%0.099%KU312315.1
3214321417%0.099%KU740199.1
2870419795%0.071%DQ859064.1
2682268214%0.099%KJ634273.1
2048204811%0.099%KU686218.1
2017201711%0.099%KU179098.1
175217529%0.099%KM078936.1
174817489%0.099%KM078961.1
174617469%0.099%KM078930.1
174517459%0.099%KM078971.1
174517459%0.099%KM078970.1
174517459%0.099%KM078933.1
174317439%0.099%KM078929.1
160216028%0.099%KJ873160.1
142014207%0.099%KJ873161.1
138213827%0.099%KM851039.1
134613467%0.099%KU556802.1
134613467%0.098%KM851038.1
1306130610%0.088%AF013415.1
124012406%0.099%KU232300.1
123612366%0.099%KT200609.1
123112316%0.099%KU232290.1
122912296%0.099%KU232297.1
122012206%0.099%KU232294.1
121812186%0.099%KU232292.1
121412146%0.099%KU232298.1
121112116%0.099%KU232296.1
121112116%0.099%KU232293.1
120512056%0.099%KU232295.1
119511956%0.099%KU232288.1
119111916%0.099%KU232289.1
118711876%0.099%KU232299.1
118611866%0.099%KU232291.1
113911396%0.099%KU758878.1
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