niman Posted July 17, 2015 Report Share Posted July 17, 2015 APHA has released full H7N7 sequences from chicken in Lancashire Link to comment Share on other sites More sharing options...
niman Posted July 17, 2015 Author Report Share Posted July 17, 2015 Isolate detailIsolate name: A/chicken/England/26352/2015 Isolate ID: EPI_ISL_191604 Passage details/history: egg passage 1 Type: A / H7N7 Lineage: Sample information Collection date: 2015-07-09 Host Chicken Additional host information: pooled cloacal swab Domestic status: Domestic Is vaccinated: Location: United Kingdom / Lancashire Additional location information: Preston Health status: Sick Specimen source: Cloacal swab Strain or commercial product name used for vaccination: Institute information Originating lab: Animal and Plant Health Agency (APHA) Sample ID given by the sample provider: AV-15-026352 Address: Animal and Plant Health Agency (APHA) Virology Department Woodham Lane New Haw, Addlestone, Surrey KT15 3NB United Kingdom Submitting lab: Animal and Plant Health Agency (APHA) Sample ID given by the submitting laboratory: 26352 Authors: Coward, V; Thomas, S; McGinn, N; Ellis, R; Londt, B; Seekings, A; Reid, S; Brookes, S; Manvell, R; Banks, J; Brown, I Address: Animal and Plant Health Agency (APHA) Virology Department Woodham Lane New Haw, Addlestone, Surrey KT15 3NB United Kingdom PublicationPublication In vivo antiviral resistance PhenotypeGenotypeUnspecifiedAntiviral resistance tested by experimental procedures Adamantanes: Unknown Oseltamivir: Unknown Zanamivir: Unknown Peramivir: Unknown Other: Unknown Additional informationAntigenic characterization: Note: Sequence segmentidentifierlengthaccession #INSDCSequence PB2 A/chicken/England/26352/2015 2341 EPI623943 PB1 A/chicken/England/26352/2015 2341 EPI623944 PA A/chicken/England/26352/2015 2233 EPI623937 HA A/chicken/England/26352/2015 1704 EPI623939 NP A/chicken/England/26352/2015 1559 EPI623940 NA A/chicken/England/26352/2015 1464 EPI623941 MP A/chicken/England/26352/2015 1002 EPI623938 NS A/chicken/England/26352/2015 855 EPI623942 Submitter information Submitter: Seekings, Amanda Submission Date: 2015-07-17 Last modifier: Seekings, Amanda Last modified: 2015-07-17 Address: Animal and Plant Health Agency (APHA) Virology Department Woodham Lane New Haw, Addlestone, Surrey KT15 3NB United Kingdom Link to comment Share on other sites More sharing options...
niman Posted July 17, 2015 Author Report Share Posted July 17, 2015 DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI623939A/chicken/England/26352/2015 (A/H7N7) segment 4 (HA)3147.80.000000e+001704/1704 (100%)EPI60272A/turkey/Italy/3620/2003 (A/H7N3) segment 4 (HA)2638.10.000000e+001614/1704 (94%)EPI296568A/mallard/Netherlands/9/2005 (A/H7N7) segment 4 (HA)2586.40.000000e+001602/1699 (94%)EPI69101A/turkey/Italy/4617/1999 (A/H7N1) segment 4 (HA)2569.80.000000e+001607/1711 (93%)EPI69063A/chicken/Italy/4789/1999 (A/H7N1) segment 4 (HA)2569.80.000000e+001607/1711 (93%)EPI63258A/chicken/Italy/4746/1999 (A/H7N1) segment 4 (HA)2569.80.000000e+001607/1711 (93%)EPI60386A/turkey/Italy/4580/99 (A/H7N1) segment 4 (HA)2569.80.000000e+001607/1711 (93%)EPI58714A/ostrich/Italy/1038/2000 (A/H7N1) segment 4 (HA)2569.80.000000e+001607/1711 (93%)EPI63296A/quail/Italy/396/2000 (A/H7N1) segment 4 (HA)2566.10.000000e+001606/1711 (93%)EPI12992A/Turkey/Italy/335/00 (A/H7N1) segment 4 (HA)2566.10.000000e+001605/1709 (93%)EPI12990A/Turkey/Italy/13468/99 (A/H7N1) segment 4 (HA)2566.10.000000e+001605/1709 (93%)EPI12984A/Turkey/Italy/13467/99 (A/H7N1) segment 4 (HA)2566.10.000000e+001605/1709 (93%)EPI12982A/Chicken/Italy/13307/99 (A/H7N1) segment 4 (HA)2566.10.000000e+001605/1709 (93%)EPI12980A/chicken/Italy/13474/99 (A/H7N1) segment 4 (HA)2566.10.000000e+001605/1709 (93%)EPI242904A/chicken/Italy/445/99 (A/H7N1) segment 4 (HA)2564.30.000000e+001606/1711 (93%)EPI242903A/Italy/445/99 (A/H7N1) segment 4 (HA)2564.30.000000e+001606/1711 (93%)EPI69044A/quail/Italy/4992/1999 (A/H7N1) segment 4 (HA)2564.30.000000e+001606/1711 (93%)EPI68427A/turkey/Italy/4708/1999 (A/H7N1) segment 4 (HA)2564.30.000000e+001606/1711 (93%)EPI68199A/chicken/Italy/2335/2000 (A/H7N1) segment 4 (HA)2564.30.000000e+001606/1711 (93%)EPI60747A/duck/Italy/551/2000 (A/H7N1) segment 4 (HA)2564.30.000000e+001606/1711 (93%)EPI43057A/chicken/Italy/1285/2000 (A/H7N1) segment 4 (HA)2564.30.000000e+001606/1711 (93%)EPI13148A/chicken/Italy/445/99 (A/H7N1) segment 4 (HA)2564.30.000000e+001606/1711 (93%)EPI68218A/turkey/Italy/1084/2000 (A/H7N1) segment 4 (HA)2558.70.000000e+001605/1711 (93%)EPI63277A/guinea fowl/Italy/155/2000 (A/H7N1) segment 4 (HA)2558.70.000000e+001605/1711 (93%)EPI507710A/turkey/Italy/4828/1999 (A/H7N1) segment 4 (HA)2556.90.000000e+001598/1701 (93%)EPI505858A/guinea fowl/Italy/1766/2000 (A/H7N1) segment 4 (HA)2555.00.000000e+001597/1701 (93%)EPI238415A/Turkey/Italy/13489/99 (A/H7N1) segment 4 (HA)2555.00.000000e+001603/1709 (93%)EPI12884A/turkey/Italy/12598/99 (A/H7N1) segment 4 (HA)2555.00.000000e+001603/1709 (93%)EPI353345A/chicken/Italy/445/1999 (A/H7N1) segment 4 (HA)2553.20.000000e+001600/1705 (93%)EPI68522A/pekin duck/Italy/1848/2000 (A/H7N1) segment 4 (HA)2553.20.000000e+001604/1711 (93%)EPI507734A/turkey/Italy/4756/1999 (A/H7N1) segment 4 (HA)2551.30.000000e+001597/1701 (93%)EPI507718A/turkey/Italy/4827/1999 (A/H7N1) segment 4 (HA)2551.30.000000e+001597/1701 (93%)EPI507702A/turkey/Italy/4618/1999 (A/H7N1) segment 4 (HA)2551.30.000000e+001597/1701 (93%)EPI107393A/ostrich/Italy/984/00 (A/H7N1) segment 4 (HA)2551.30.000000e+001597/1701 (93%)EPI107376A/ostrich/Italy/984/00 (A/H7N1) segment 4 (HA)2551.30.000000e+001597/1701 (93%)EPI107357A/chicken/Italy/5093/99 (A/H7N1) segment 4 (HA)2551.30.000000e+001597/1701 (93%)EPI107338A/chicken/Italy/5093/99 (A/H7N1) segment 4 (HA)2551.30.000000e+001597/1701 (93%)EPI560340A/Italy/3/2013 (A/H7N7) segment 4 (HA)2549.50.000000e+001603/1711 (93%)EPI12988A/Chicken/Italy/267/00 (A/H7N1) segment 4 (HA)2549.50.000000e+001602/1709 (93%)EPI505811A/chicken/Italy/1651/2000 (A/H7N1) segment 4 (HA)2545.80.000000e+001596/1701 (93%)EPI505601A/turkey/Italy/5005/1999 (A/H7N1) segment 4 (HA)2545.80.000000e+001596/1701 (93%)EPI505582A/chicken/Italy/4911/1999 (A/H7N1) segment 4 (HA)2545.80.000000e+001596/1701 (93%)EPI505581A/turkey/Italy/4906/1999 (A/H7N1) segment 4 (HA)2545.80.000000e+001596/1701 (93%)EPI60690A/turkey/Italy/2984/2000 (A/H7N1) segment 4 (HA)2545.80.000000e+001598/1705 (93%)EPI505640A/turkey/Italy/140/2000 (A/H7N1) segment 4 (HA)2544.00.000000e+001595/1701 (93%)EPI505851A/chicken/Italy/1730/2000 (A/H7N1) segment 4 (HA)2542.10.000000e+001595/1701 (93%)EPI505603A/chicken/Italy/5074/1999 (A/H7N1) segment 4 (HA)2542.10.000000e+001592/1696 (93%)EPI507726A/turkey/Italy/4749/1999 (A/H7N1) segment 4 (HA)2540.30.000000e+001595/1701 (93%)EPI505703A/chicken/Italy/797/2000 (A/H7N1) segment 4 (HA)2540.30.000000e+001595/1701 (93%)EPI505580A/chicken/Italy/4845/1999 (A/H7N1) segment 4 (HA)2540.30.000000e+001595/1701 (93%)EPI295009A/chicken/Netherlands/03009694/03(H7N7) (A/H7N7) segment 4 (HA)2540.30.000000e+001602/1711 (93%)EPI290405A/chicken/Netherlands/03009941/03(H7N7) (A/H7N7) segment 4 (HA)2540.30.000000e+001602/1711 (93%)EPI290309A/chicken/Netherlands/03008998/03(H7N7) (A/H7N7) segment 4 (HA)2540.30.000000e+001602/1711 (93%)EPI505875A/quail/Italy/1764/2000 (A/H7N1) segment 4 (HA)2536.60.000000e+001594/1701 (93%)EPI505861A/guinea fowl/Italy/1847/2000 (A/H7N1) segment 4 (HA)2536.60.000000e+001594/1701 (93%)EPI505809A/goose/Italy/1310/2000 (A/H7N1) segment 4 (HA)2536.60.000000e+001594/1701 (93%)EPI505779A/guineafowl/Italy/918/2000 (A/H7N1) segment 4 (HA)2534.70.000000e+001594/1701 (93%)EPI294994A/chicken/Netherlands/03009124/03(H7N7) (A/H7N7) segment 4 (HA)2534.70.000000e+001601/1711 (93%)EPI294982A/chicken/Netherlands/03009044/03(H7N7) (A/H7N7) segment 4 (HA)2534.70.000000e+001601/1711 (93%)EPI294964A/chicken/Netherlands/03006730/03(H7N7) (A/H7N7) segment 4 (HA)2534.70.000000e+001601/1711 (93%)EPI294937A/chicken/Netherlands/03008201/03(H7N7) (A/H7N7) segment 4 (HA)2534.70.000000e+001601/1711 (93%)EPI294934A/chicken/Netherlands/03007782/03(H7N7) (A/H7N7) segment 4 (HA)2534.70.000000e+001601/1711 (93%)EPI294931A/chicken/Netherlands/03003258/03(H7N7) (A/H7N7) segment 4 (HA)2534.70.000000e+001601/1711 (93%)EPI294922A/chicken/Netherlands/621576/03(H7N7) (A/H7N7) segment 4 (HA)2534.70.000000e+001601/1711 (93%)EPI294916A/chicken/Netherlands/03003214/03(H7N7)/strain2 (A/H7N7) segment 4 (HA)2534.70.000000e+001601/1711 (93%)EPI294913A/chicken/Netherlands/03003214/03(H7N7)/strain1 (A/H7N7) segment 4 (HA)2534.70.000000e+001601/1711 (93%)EPI294907A/chicken/Netherlands/03002973/03(H7N7) (A/H7N7) segment 4 (HA)2534.70.000000e+001601/1711 (93%)EPI290464A/domestic duck/Netherlands/621627/03(H7N7) (A/H7N7) segment 4 (HA)2534.70.000000e+001601/1711 (93%)EPI290429A/turkey/Netherlands/03010496/03(H7N7) (A/H7N7) segment 4 (HA)2534.70.000000e+001601/1711 (93%)EPI290345A/chicken/Netherlands/03009125/03(H7N7) (A/H7N7) segment 4 (HA)2534.70.000000e+001601/1711 (93%)EPI290336A/chicken/Netherlands/03003415/03(H7N7) (A/H7N7) segment 4 (HA)2534.70.000000e+001601/1711 (93%)EPI290330A/chicken/Netherlands/03009014/03(H7N7) (A/H7N7) segment 4 (HA)2534.70.000000e+001601/1711 (93%)EPI290306A/chicken/Netherlands/03008514/03(H7N7) (A/H7N7) segment 4 (HA)2534.70.000000e+001601/1711 (93%)EPI290294A/chicken/Netherlands/03008450/03(H7N7) (A/H7N7) segment 4 (HA)2534.70.000000e+001601/1711 (93%)EPI290267A/chicken/Netherlands/621571/03(H7N7) (A/H7N7) segment 4 (HA)2534.70.000000e+001601/1711 (93%)EPI290255A/chicken/Netherlands/03006725/03(H7N7) (A/H7N7) segment 4 (HA)2534.70.000000e+001601/1711 (93%)EPI290249A/chicken/Netherlands/03005431/03(H7N7) (A/H7N7) segment 4 (HA)2534.70.000000e+001601/1711 (93%)EPI290240A/turkey/Netherlands/03003568/03(H7N7) (A/H7N7) segment 4 (HA)2534.70.000000e+001601/1711 (93%)EPI290237A/chicken/Netherlands/03003401/03(H7N7) (A/H7N7) segment 4 (HA)2534.70.000000e+001601/1711 (93%)EPI290234A/chicken/Netherlands/03003246/03(H7N7) (A/H7N7) segment 4 (HA)2534.70.000000e+001601/1711 (93%)EPI290231A/chicken/Netherlands/03003255/03(H7N7) (A/H7N7) segment 4 (HA)2534.70.000000e+001601/1711 (93%)EPI290219A/chicken/Netherlands/03003370/03(H7N7) (A/H7N7) segment 4 (HA)2534.70.000000e+001601/1711 (93%)EPI290216A/chicken/Netherlands/03003243/03(H7N7) (A/H7N7) segment 4 (HA)2534.70.000000e+001601/1711 (93%)EPI290198A/chicken/Netherlands/03003105/03(H7N7) (A/H7N7) segment 4 (HA)2534.70.000000e+001601/1711 (93%)EPI290195A/chicken/Netherlands/03003096/03(H7N7) (A/H7N7) segment 4 (HA)2534.70.000000e+001601/1711 (93%)EPI290192A/chicken/Netherlands/03002971/03(H7N7) (A/H7N7) segment 4 (HA)2534.70.000000e+001601/1711 (93%)EPI290186A/chicken/Netherlands/03003008/03(H7N7) (A/H7N7) segment 4 (HA)2534.70.000000e+001601/1711 (93%)EPI290183A/chicken/Netherlands/03003010/03(H7N7) (A/H7N7) segment 4 (HA)2534.70.000000e+001601/1711 (93%)EPI290180A/chicken/Netherlands/03003217/03(H7N7) (A/H7N7) segment 4 (HA)2534.70.000000e+001601/1711 (93%)EPI290177A/chicken/Netherlands/03003212/03(H7N7) (A/H7N7) segment 4 (HA)2534.70.000000e+001601/1711 (93%)EPI290175A/chicken/Netherlands/621560/03(H7N7) (A/H7N7) segment 4 (HA)2534.70.000000e+001601/1711 (93%)EPI290172A/chicken/Netherlands/03003093/03(H7N7) (A/H7N7) segment 4 (HA)2534.70.000000e+001601/1711 (93%)EPI237863A/chicken/Netherlands/03009940/03 (A/H7N7) segment 4 (HA)2534.70.000000e+001601/1711 (93%)EPI237700A/chicken/Netherlands/03008084/03 (A/H7N7) segment 4 (HA)2534.70.000000e+001601/1711 (93%)EPI237682A/chicken/Netherlands/03013102/03 (A/H7N7) segment 4 (HA)2534.70.000000e+001601/1711 (93%)EPI237679A/chicken/Netherlands/03012874/03 (A/H7N7) segment 4 (HA)2534.70.000000e+001601/1711 (93%)EPI237676A/chicken/Netherlands/03012135/03 (A/H7N7) segment 4 (HA)2534.70.000000e+001601/1711 (93%)EPI237670A/chicken/Netherlands/03005336/03 (A/H7N7) segment 4 (HA)2534.70.000000e+001601/1711 (93%)EPI237667A/chicken/Netherlands/03005499/03 (A/H7N7) segment 4 (HA)2534.70.000000e+001601/1711 (93%)EPI237664A/chicken/Netherlands/03008000/03 (A/H7N7) segment 4 (HA)2534.70.000000e+001601/1711 (93%) Link to comment Share on other sites More sharing options...
niman Posted July 17, 2015 Author Report Share Posted July 17, 2015 AlignSegment-IDNameScoreE-ValueIdentityEPI623941A/chicken/England/26352/2015 (A/H7N7) segment 6 (NA)2616.00.000000e+001416/1416 (100%)EPI559613A/harbour seal/Germany/1/2014 (A/H10N7) segment 6 (NA)2527.30.000000e+001400/1416 (98%)EPI544353A/harbour seal/Germany/1/2014 (A/H10N7) segment 6 (NA)2527.30.000000e+001400/1416 (98%)EPI541475A/harbor seal/Denmark/14-5060-1lu/2014-07 (A/H10N7) segment 6 (NA)2521.80.000000e+001399/1416 (98%)EPI541473A/harbor seal/Denmark/14-5061-1lu/2014-07 (A/H10N7) segment 6 (NA)2516.30.000000e+001398/1416 (98%)EPI559671A/harbour seal/Germany/1/2014 (A/H10N7) segment 6 (NA)2497.80.000000e+001383/1399 (98%)EPI544357A/harbour seal/Germany/1/2014 (A/H10N7) segment 6 (NA)2497.80.000000e+001383/1399 (98%)EPI561719A/chicken/England/2830/2015 (A/H7N7) segment 6 (NA)2488.60.000000e+001393/1416 (98%)EPI541471A/mallard/Denmark/303878-1S/2013-05 (A/H7N7) segment 6 (NA)2427.60.000000e+001357/1378 (98%)EPI547697Seal/Sweden/SVA0824/2014 /H10N7 (A/H10N7) segment 6 (NA)2377.80.000000e+001321/1338 (98%)EPI618123A/mallard/Republic of Georgia/1/2010 (A/H10N7) segment 6 (NA)2366.70.000000e+001371/1416 (96%)EPI618023A/domestic duck/Republic of Georgia/1/2010 (A/H10N7) segment 6 (NA)2366.70.000000e+001371/1416 (96%)EPI618036A/domestic duck/Republic of Georgia/2/2010 (A/H10N7) segment 6 (NA)2361.10.000000e+001370/1416 (96%)EPI545213A/Seal/Sweden/SVA0546/2014 (A/H10N7) segment 6 (NA)2350.10.000000e+001368/1416 (96%)EPI617757A/mallard/Republic of Georgia/14/2011 (A/H10N7) segment 6 (NA)2316.80.000000e+001362/1416 (96%)EPI594131A/chicken/Jiangxi/10784/2014 (A/H7N7) segment 6 (NA)2311.30.000000e+001361/1416 (96%)EPI220649A/northern pintail/Akita/1370/2008 (A/H7N7) segment 6 (NA)2228.20.000000e+001349/1419 (95%)EPI220647A/northern pintail/Akita/1369/2008 (A/H7N7) segment 6 (NA)2228.20.000000e+001349/1419 (95%)EPI220645A/northern pintail/Akita/1368/2008 (A/H7N7) segment 6 (NA)2228.20.000000e+001349/1419 (95%)EPI220643A/northern pintail/Akita/1367/2008 (A/H7N7) segment 6 (NA)2228.20.000000e+001349/1419 (95%)EPI161529A/duck/Hokkaido/W90/2007 (A/H10N7) segment 6 (NA)2228.20.000000e+001348/1418 (95%)EPI181920A/duck/Tsukuba/30/2007 (A/H7N7) segment 6 (NA)2222.60.000000e+001348/1419 (94%)EPI181919A/duck/Tsukuba/700/2007 (A/H7N7) segment 6 (NA)2222.60.000000e+001347/1418 (94%)EPI181916A/duck/Tsukuba/664/2007 (A/H7N7) segment 6 (NA)2222.60.000000e+001347/1418 (94%)EPI244504A/magpie/Korea/YJD174/2007 (A/H7N7) segment 6 (NA)2217.10.000000e+001346/1418 (94%)EPI244494A/mallard/Korea/GH170/2007 (A/H7N7) segment 6 (NA)2217.10.000000e+001346/1418 (94%)EPI220658A/northern pintail/Miyagi/674/2008 (A/H7N7) segment 6 (NA)2217.10.000000e+001347/1419 (94%)EPI220654A/northern pintail/Aomori/372/2008 (A/H7N7) segment 6 (NA)2217.10.000000e+001347/1419 (94%)EPI244541A/mallard/Korea/GH171/2007 (A/H7N7) segment 6 (NA)2211.60.000000e+001345/1418 (94%)EPI220641A/northern pintail/Akita/1366/2008 (A/H7N7) segment 6 (NA)2211.60.000000e+001347/1420 (94%)EPI181918A/duck/Chiba/13/2008 (A/H7N7) segment 6 (NA)2211.60.000000e+001346/1419 (94%)EPI181917A/duck/Tsukuba/922/2008 (A/H7N7) segment 6 (NA)2211.60.000000e+001346/1419 (94%)EPI618961A/mallard/Sweden/1417/2002 (A/H10N7) segment 6 (NA)2200.50.000000e+001342/1417 (94%)EPI470247A/duck/Fujian/5448/2008 (A/H7N7) segment 6 (NA)2200.50.000000e+001343/1418 (94%)EPI470237A/duck/Fujian/5476/2008 (A/H7N7) segment 6 (NA)2200.50.000000e+001343/1418 (94%)EPI220651A/northern pintail/Aomori/1001/2008 (A/H7N7) segment 6 (NA)2200.50.000000e+001343/1418 (94%)EPI470238A/duck/Fujian/5728/2008 (A/H7N7) segment 6 (NA)2194.90.000000e+001343/1419 (94%)EPI470236A/duck/Fujian/5408/2008 (A/H7N7) segment 6 (NA)2194.90.000000e+001343/1419 (94%)EPI618973A/mallard/Sweden/3151/2003 (A/H10N7) segment 6 (NA)2189.40.000000e+001340/1417 (94%)EPI507992A/mallard/Korea/NHG187/2008 (A/H7N7) segment 6 (NA)2182.00.000000e+001327/1399 (94%)EPI3003A/duck/Mongolia/583/02 (A/H4N7) segment 6 (NA)2178.30.000000e+001340/1419 (94%)EPI1364A/duck/Hokkaido/Vac-2/04 (A/H7N7) segment 6 (NA)2178.30.000000e+001340/1419 (94%)EPI372290A/shoveler/Egypt/00600-NAMRU3/2004 (A/H10N7) segment 6 (NA)2172.80.000000e+001338/1418 (94%)EPI619256A/mallard/Sweden/7206/2004 (A/H7N7) segment 6 (NA)2167.20.000000e+001336/1417 (94%)EPI372322A/shoveler/Egypt/09864-NAMRU3/2004 (A/H7N7) segment 6 (NA)2163.50.000000e+001335/1417 (94%)EPI237892A/chicken/Netherlands/03011728/03 (A/H7N7) segment 6 (NA)2161.70.000000e+001337/1419 (94%)EPI235187A/Mallard/64650/03 (A/H5N7) segment 6 (NA)2161.70.000000e+001337/1419 (94%)EPI372306A/teal/Egypt/00835-NAMRU3/2004 (A/H7N7) segment 6 (NA)2156.20.000000e+001335/1418 (94%)EPI295038A/chicken/Netherlands/03010736/03(H7N7) (A/H7N7) segment 6 (NA)2156.20.000000e+001336/1419 (94%)EPI295032A/chicken/Netherlands/03009334/03(H7N7) (A/H7N7) segment 6 (NA)2156.20.000000e+001336/1419 (94%)EPI295026A/chicken/Netherlands/03009862/03(H7N7) (A/H7N7) segment 6 (NA)2156.20.000000e+001336/1419 (94%)EPI295014A/chicken/Netherlands/03009755/03(H7N7) (A/H7N7) segment 6 (NA)2156.20.000000e+001336/1419 (94%)EPI295005A/chicken/Netherlands/03009276/03(H7N7) (A/H7N7) segment 6 (NA)2156.20.000000e+001336/1419 (94%)EPI295002A/chicken/Netherlands/03009281/03(H7N7) (A/H7N7) segment 6 (NA)2156.20.000000e+001336/1419 (94%)EPI294996A/chicken/Netherlands/03009145/03(H7N7) (A/H7N7) segment 6 (NA)2156.20.000000e+001336/1419 (94%)EPI294990A/chicken/Netherlands/03009119/03(H7N7) (A/H7N7) segment 6 (NA)2156.20.000000e+001336/1419 (94%)EPI294945A/chicken/Netherlands/03008327/03(H7N7) (A/H7N7) segment 6 (NA)2156.20.000000e+001336/1419 (94%)EPI294924A/chicken/Netherlands/621629/03(H7N7) (A/H7N7) segment 6 (NA)2156.20.000000e+001336/1419 (94%)EPI290422A/chicken/Netherlands/03009885/03(H7N7) (A/H7N7) segment 6 (NA)2156.20.000000e+001336/1419 (94%)EPI290413A/chicken/Netherlands/03010040/03(H7N7) (A/H7N7) segment 6 (NA)2156.20.000000e+001336/1419 (94%)EPI290401A/chicken/Netherlands/03009923/03(H7N7) (A/H7N7) segment 6 (NA)2156.20.000000e+001336/1419 (94%)EPI290392A/chicken/Netherlands/03009888/03(H7N7) (A/H7N7) segment 6 (NA)2156.20.000000e+001336/1419 (94%)EPI290386A/chicken/Netherlands/03009884/03(H7N7) (A/H7N7) segment 6 (NA)2156.20.000000e+001336/1419 (94%)EPI290383A/chicken/Netherlands/03009863/03(H7N7) (A/H7N7) segment 6 (NA)2156.20.000000e+001336/1419 (94%)EPI290377A/chicken/Netherlands/03009858/03(H7N7) (A/H7N7) segment 6 (NA)2156.20.000000e+001336/1419 (94%)EPI290371A/chicken/Netherlands/03009859/03(H7N7) (A/H7N7) segment 6 (NA)2156.20.000000e+001336/1419 (94%)EPI290368A/chicken/Netherlands/03009833/03(H7N7) (A/H7N7) segment 6 (NA)2156.20.000000e+001336/1419 (94%)EPI290362A/chicken/Netherlands/03009828/03(H7N7) (A/H7N7) segment 6 (NA)2156.20.000000e+001336/1419 (94%)EPI290356A/chicken/Netherlands/03009787/03(H7N7) (A/H7N7) segment 6 (NA)2156.20.000000e+001336/1419 (94%)EPI290353A/chicken/Netherlands/03009754/03(H7N7) (A/H7N7) segment 6 (NA)2156.20.000000e+001336/1419 (94%)EPI290350A/chicken/Netherlands/03009403/03(H7N7) (A/H7N7) segment 6 (NA)2156.20.000000e+001336/1419 (94%)EPI290326A/chicken/Netherlands/03009059/03(H7N7) (A/H7N7) segment 6 (NA)2156.20.000000e+001336/1419 (94%)EPI290323A/chicken/Netherlands/03009083/03(H7N7) (A/H7N7) segment 6 (NA)2156.20.000000e+001336/1419 (94%)EPI290275A/chicken/Netherlands/03008082/03(H7N7) (A/H7N7) segment 6 (NA)2156.20.000000e+001336/1419 (94%)EPI290257A/chicken/Netherlands/03007158/03(H7N7) (A/H7N7) segment 6 (NA)2156.20.000000e+001336/1419 (94%)EPI237851A/chicken/Netherlands/03009122/03 (A/H7N7) segment 6 (NA)2156.20.000000e+001336/1419 (94%)EPI237739A/chicken/Netherlands/03010734/03 (A/H7N7) segment 6 (NA)2156.20.000000e+001336/1419 (94%)EPI237736A/chicken/Netherlands/03010539/03 (A/H7N7) segment 6 (NA)2156.20.000000e+001336/1419 (94%)EPI237722A/chicken/Netherlands/03009144/03 (A/H7N7) segment 6 (NA)2156.20.000000e+001336/1419 (94%)EPI237719A/chicken/Netherlands/03009012/03 (A/H7N7) segment 6 (NA)2156.20.000000e+001336/1419 (94%)EPI237714A/chicken/Netherlands/03003445/03 (A/H7N7) segment 6 (NA)2156.20.000000e+001336/1419 (94%)EPI338783A/mallard/Sweden/7206/2004 (A/H7N7) segment 6 (NA)2150.60.000000e+001333/1417 (94%)EPI319975A/Netherlands/305/03 (A/H7N7) segment 6 (NA)2150.60.000000e+001333/1416 (94%)EPI319933A/Netherlands/292/03 (A/H7N7) segment 6 (NA)2150.60.000000e+001333/1416 (94%)EPI319900A/Netherlands/121/03 (A/H7N7) segment 6 (NA)2150.60.000000e+001333/1416 (94%)EPI295035A/chicken/Netherlands/03010735/03(H7N7) (A/H7N7) segment 6 (NA)2150.60.000000e+001336/1420 (94%)EPI295023A/chicken/Netherlands/03008331/03(H7N7) (A/H7N7) segment 6 (NA)2150.60.000000e+001334/1418 (94%)EPI295020A/chicken/Netherlands/03009432/03(H7N7) (A/H7N7) segment 6 (NA)2150.60.000000e+001335/1419 (94%)EPI295017A/chicken/Netherlands/03009190/03(H7N7) (A/H7N7) segment 6 (NA)2150.60.000000e+001335/1419 (94%)EPI294993A/chicken/Netherlands/03009124/03(H7N7) (A/H7N7) segment 6 (NA)2150.60.000000e+001335/1419 (94%)EPI294981A/chicken/Netherlands/03009044/03(H7N7) (A/H7N7) segment 6 (NA)2150.60.000000e+001335/1419 (94%)EPI294978A/chicken/Netherlands/03009048/03(H7N7) (A/H7N7) segment 6 (NA)2150.60.000000e+001335/1419 (94%)EPI294975A/chicken/Netherlands/03009080/03(H7N7) (A/H7N7) segment 6 (NA)2150.60.000000e+001334/1418 (94%)EPI294972A/chicken/Netherlands/03008200/03(H7N7) (A/H7N7) segment 6 (NA)2150.60.000000e+001334/1418 (94%)EPI294954A/chicken/Netherlands/03008379/03(H7N7) (A/H7N7) segment 6 (NA)2150.60.000000e+001334/1418 (94%)EPI294951A/chicken/Netherlands/03008381/03(H7N7) (A/H7N7) segment 6 (NA)2150.60.000000e+001334/1418 (94%)EPI294942A/chicken/Netherlands/03003633/03(H7N7) (A/H7N7) segment 6 (NA)2150.60.000000e+001335/1419 (94%)EPI294930A/chicken/Netherlands/03003258/03(H7N7) (A/H7N7) segment 6 (NA)2150.60.000000e+001334/1418 (94%)EPI294921A/chicken/Netherlands/621576/03(H7N7) (A/H7N7) segment 6 (NA)2150.60.000000e+001335/1419 (94%)EPI294918A/chicken/Netherlands/621572/03(H7N7) (A/H7N7) segment 6 (NA)2150.60.000000e+001334/1418 (94%) Link to comment Share on other sites More sharing options...
niman Posted July 17, 2015 Author Report Share Posted July 17, 2015 AlignSegment-IDNameScoreE-ValueIdentityEPI623938A/chicken/England/26352/2015 (A/H7N7) segment 7 (MP)1807.10.000000e+00982/982 (100%)EPI513559A/mallard/Sweden/101180/2009 (A/H4N6) segment 7 (MP)1768.40.000000e+00973/982 (99%)EPI513552A/mallard/Sweden/101081/2009 (A/H4N6) segment 7 (MP)1768.40.000000e+00973/982 (99%)EPI513538A/mallard/Sweden/100881/2009 (A/H4N6) segment 7 (MP)1768.40.000000e+00973/982 (99%)EPI513499A/mallard/Sweden/101431/2009 (A/H4N6) segment 7 (MP)1768.40.000000e+00973/982 (99%)EPI513485A/mallard/Sweden/101298/2009 (A/H4N6) segment 7 (MP)1768.40.000000e+00973/982 (99%)EPI248496A/mallard/Germany-RP/R193/09 (A/H1N1) segment 7 (MP)1768.40.000000e+00973/982 (99%)EPI545215A/Seal/Sweden/SVA0546/2014 (A/H10N7) segment 7 (MP)1762.80.000000e+00972/982 (98%)EPI439562A/avian/Israel/824/2005 (A/H10N2) segment 7 (MP)1762.80.000000e+00972/982 (98%)EPI619262A/mallard/Sweden/60041/2007 (A/H8N2) segment 7 (MP)1757.30.000000e+00971/982 (98%)EPI559668A/harbour seal/Germany/1/2014 (A/H10N7) segment 7 (MP)1757.30.000000e+00971/982 (98%)EPI544354A/harbour seal/Germany/1/2014 (A/H10N7) segment 7 (MP)1757.30.000000e+00971/982 (98%)EPI377995A/common teal/Netherlands/2/2008 (A/H2N3) segment 7 (MP)1757.30.000000e+00971/982 (98%)EPI372421A/teal/Egypt/01207-NAMRU3/2007 (A/H10N7) segment 7 (MP)1757.30.000000e+00971/982 (98%)EPI372413A/shoveler/Egypt/00241-NAMRU3/2007 (A/H7N3) segment 7 (MP)1757.30.000000e+00971/982 (98%)EPI372397A/shoveler/Egypt/01198-NAMRU3/2007 (A/H10N7) segment 7 (MP)1757.30.000000e+00971/982 (98%)EPI296609A/mallard/Sweden/90/2005 (A/H11N9) segment 7 (MP)1757.30.000000e+00971/982 (98%)EPI398925A/common gull/Norway/10_1602/2009 (A/H6N8) segment 7 (MP)1755.40.000000e+00970/981 (98%)EPI220565A/mallard/Czech Republic/15307-17/2008 (A/H0) segment 7 (MP)1755.40.000000e+00970/981 (98%)EPI619147A/mallard/Sweden/50055/2006 (A/H8N4) segment 7 (MP)1751.70.000000e+00970/982 (98%)EPI619097A/mallard/Sweden/68537/2007 (A/H0) segment 7 (MP)1751.70.000000e+00970/982 (98%)EPI514674A/mallard/Sweden/7925/2005 (A/H4N6) segment 7 (MP)1751.70.000000e+00970/982 (98%)EPI514029A/mallard/Sweden/68575/2007 (A/H4N6) segment 7 (MP)1751.70.000000e+00970/982 (98%)EPI513821A/mallard/Sweden/79956/2008 (A/H0) segment 7 (MP)1751.70.000000e+00970/982 (98%)EPI513814A/mallard/Sweden/79445/2008 (A/H4N6) segment 7 (MP)1751.70.000000e+00970/982 (98%)EPI513583A/mallard/Sweden/80415/2008 (A/H0) segment 7 (MP)1751.70.000000e+00970/982 (98%)EPI513567A/mallard/Sweden/80348/2008 (A/H0) segment 7 (MP)1751.70.000000e+00970/982 (98%)EPI513531A/mallard/Sweden/100049/2009 (A/H4N6) segment 7 (MP)1751.70.000000e+00970/982 (98%)EPI513524A/mallard/Sweden/99967/2009 (A/H4N6) segment 7 (MP)1751.70.000000e+00970/982 (98%)EPI476117A/pink-footed goose/Iceland/0987/2011 (A/H6N8) segment 7 (MP)1751.70.000000e+00971/983 (98%)EPI476111A/greylag goose/Iceland/0980/2011 (A/H6N8) segment 7 (MP)1751.70.000000e+00971/983 (98%)EPI476097A/greylag goose/Iceland/0961/2011 (A/H6N8) segment 7 (MP)1751.70.000000e+00971/983 (98%)EPI476067A/greylag goose/Iceland/0926/2011 (A/H6N8) segment 7 (MP)1751.70.000000e+00971/983 (98%)EPI476051A/greylag goose/Iceland/0921/2011 (A/H6N8) segment 7 (MP)1751.70.000000e+00971/983 (98%)EPI476044A/greylag goose/Iceland/0911/2011 (A/H6N8) segment 7 (MP)1751.70.000000e+00971/983 (98%)EPI476031A/greylag goose/Iceland/1474/2011 (A/H6N8) segment 7 (MP)1751.70.000000e+00971/983 (98%)EPI378011A/mallard/Netherlands/12/2008 (A/H2N3) segment 7 (MP)1751.70.000000e+00970/982 (98%)EPI372461A/teal/Egypt/01351-NAMRU3/2007 (A/H1N1) segment 7 (MP)1751.70.000000e+00970/982 (98%)EPI363933A/duck/Guizhou/1560/2007 (A/H6N8) segment 7 (MP)1751.70.000000e+00970/982 (98%)EPI296633A/northern shoveler/Netherlands/1/2006 (A/H8N4) segment 7 (MP)1751.70.000000e+00970/982 (98%)EPI296553A/dunlin/Sweden/1/2005 (A/H4N6) segment 7 (MP)1751.70.000000e+00970/982 (98%)EPI190341A/mallard/Netherlands/1/2006 (A/H8N4) segment 7 (MP)1751.70.000000e+00970/982 (98%)EPI182146A/Bewick's swan/Netherlands/5/2007 (A/H9N2) segment 7 (MP)1751.70.000000e+00970/982 (98%)EPI182106A/mallard/Netherlands/11/2007 (A/H6N5) segment 7 (MP)1751.70.000000e+00970/982 (98%)EPI514946A/mallard/Sweden/52405/2006 (A/H0) segment 7 (MP)1749.90.000000e+00970/982 (98%)EPI514265A/mallard/Sweden/52299/2006 (A/H4N6) segment 7 (MP)1749.90.000000e+00970/982 (98%)EPI514153A/mallard/Sweden/58359/2006 (A/H0) segment 7 (MP)1749.90.000000e+00970/982 (98%)EPI316771A/mallard/Czech Republic/13579-84K/2010 (A/H4N6) segment 7 (MP)1749.90.000000e+00969/981 (98%)EPI222177A/mallard/Czech Republic/14884-34/2007 (A/H9N2) segment 7 (MP)1749.90.000000e+00969/981 (98%)EPI222176A/mallard/Czech Republic/14760-3/2007 (A/H4) segment 7 (MP)1749.90.000000e+00969/981 (98%)EPI619241A/mallard/Sweden/5932/2005 (A/H10N7) segment 7 (MP)1746.20.000000e+00969/982 (98%)EPI618899A/mallard/Sweden/6148/2005 (A/H10N7) segment 7 (MP)1746.20.000000e+00969/982 (98%)EPI618886A/mallard/Sweden/5933/2005 (A/H0) segment 7 (MP)1746.20.000000e+00969/982 (98%)EPI618870A/mallard/Sweden/5824/2005 (A/H10N7) segment 7 (MP)1746.20.000000e+00969/982 (98%)EPI514991A/mallard/Sweden/51880/2006 (A/H0) segment 7 (MP)1746.20.000000e+00969/982 (98%)EPI514621A/mallard/Sweden/51284/2006 (A/H4N6) segment 7 (MP)1746.20.000000e+00969/982 (98%)EPI514613A/mallard/Sweden/51198/2006 (A/H4N6) segment 7 (MP)1746.20.000000e+00969/982 (98%)EPI514578A/mallard/Sweden/51586/2006 (A/H4N6) segment 7 (MP)1746.20.000000e+00969/982 (98%)EPI514570A/mallard/Sweden/51576/2006 (A/H4N6) segment 7 (MP)1746.20.000000e+00969/982 (98%)EPI514563A/mallard/Sweden/51541/2006 (A/H4N6) segment 7 (MP)1746.20.000000e+00969/982 (98%)EPI514556A/mallard/Sweden/51539/2006 (A/H4N6) segment 7 (MP)1746.20.000000e+00969/982 (98%)EPI514549A/mallard/Sweden/51532/2006 (A/H4N6) segment 7 (MP)1746.20.000000e+00969/982 (98%)EPI514537A/mallard/Sweden/51722/2006 (A/H4N6) segment 7 (MP)1746.20.000000e+00969/982 (98%)EPI514530A/mallard/Sweden/51717/2006 (A/H4N6) segment 7 (MP)1746.20.000000e+00969/982 (98%)EPI514523A/mallard/Sweden/51691/2006 (A/H4N6) segment 7 (MP)1746.20.000000e+00969/982 (98%)EPI514509A/mallard/Sweden/51633/2006 (A/H4N6) segment 7 (MP)1746.20.000000e+00969/982 (98%)EPI514502A/mallard/Sweden/51618/2006 (A/H4N6) segment 7 (MP)1746.20.000000e+00969/982 (98%)EPI514495A/mallard/Sweden/51588/2006 (A/H0) segment 7 (MP)1746.20.000000e+00969/982 (98%)EPI514474A/mallard/Sweden/51869/2006 (A/H0) segment 7 (MP)1746.20.000000e+00969/982 (98%)EPI514465A/mallard/Sweden/51854/2006 (A/H4N6) segment 7 (MP)1746.20.000000e+00969/982 (98%)EPI514458A/mallard/Sweden/51851/2006 (A/H4N6) segment 7 (MP)1746.20.000000e+00969/982 (98%)EPI514451A/mallard/Sweden/51820/2006 (A/H4N6) segment 7 (MP)1746.20.000000e+00969/982 (98%)EPI514444A/mallard/Sweden/51771/2006 (A/H4N6) segment 7 (MP)1746.20.000000e+00969/982 (98%)EPI514437A/mallard/Sweden/51755/2006 (A/H4N6) segment 7 (MP)1746.20.000000e+00969/982 (98%)EPI514428A/mallard/Sweden/51979/2006 (A/H4N6) segment 7 (MP)1746.20.000000e+00969/982 (98%)EPI514421A/mallard/Sweden/51976/2006 (A/H0) segment 7 (MP)1746.20.000000e+00969/982 (98%)EPI514413A/mallard/Sweden/51964/2006 (A/H4N6) segment 7 (MP)1746.20.000000e+00969/982 (98%)EPI514406A/mallard/Sweden/51961/2006 (A/H4N6) segment 7 (MP)1746.20.000000e+00969/982 (98%)EPI514399A/mallard/Sweden/51924/2006 (A/H4N6) segment 7 (MP)1746.20.000000e+00969/982 (98%)EPI514378A/mallard/Sweden/52082/2006 (A/H4N6) segment 7 (MP)1746.20.000000e+00969/982 (98%)EPI514371A/mallard/Sweden/52062/2006 (A/H4N6) segment 7 (MP)1746.20.000000e+00969/982 (98%)EPI514357A/mallard/Sweden/52029/2006 (A/H4N6) segment 7 (MP)1746.20.000000e+00969/982 (98%)EPI514348A/mallard/Sweden/51984/2006 (A/H0) segment 7 (MP)1746.20.000000e+00969/982 (98%)EPI514321A/mallard/Sweden/52209/2006 (A/H0) segment 7 (MP)1746.20.000000e+00969/982 (98%)EPI514311A/mallard/Sweden/52164/2006 (A/H0) segment 7 (MP)1746.20.000000e+00969/982 (98%)EPI514304A/mallard/Sweden/52134/2006 (A/H4N6) segment 7 (MP)1746.20.000000e+00969/982 (98%)EPI514293A/mallard/Sweden/52371/2006 (A/H4N1) segment 7 (MP)1746.20.000000e+00969/982 (98%)EPI514279A/mallard/Sweden/52341/2006 (A/H4N6) segment 7 (MP)1746.20.000000e+00969/982 (98%)EPI514219A/mallard/Sweden/52484/2006 (A/H4N6) segment 7 (MP)1746.20.000000e+00969/982 (98%)EPI514203A/mallard/Sweden/52473/2006 (A/H0) segment 7 (MP)1746.20.000000e+00969/982 (98%)EPI514189A/mallard/Sweden/52410/2006 (A/H4N6) segment 7 (MP)1746.20.000000e+00969/982 (98%)EPI514179A/mallard/Sweden/52383/2006 (A/H0) segment 7 (MP)1746.20.000000e+00969/982 (98%)EPI514127A/mallard/Sweden/60064/2007 (A/H4N6) segment 7 (MP)1746.20.000000e+00969/982 (98%)EPI514120A/mallard/Sweden/60063/2007 (A/H4N6) segment 7 (MP)1746.20.000000e+00969/982 (98%)EPI514113A/mallard/Sweden/60043/2007 (A/H4N6) segment 7 (MP)1746.20.000000e+00969/982 (98%)EPI514081A/mallard/Sweden/68544/2007 (A/H4N6) segment 7 (MP)1746.20.000000e+00969/982 (98%)EPI514074A/mallard/Sweden/68541/2007 (A/H4N6) segment 7 (MP)1746.20.000000e+00969/982 (98%)EPI514067A/mallard/Sweden/68538/2007 (A/H4N6) segment 7 (MP)1746.20.000000e+00969/982 (98%)EPI514060A/mallard/Sweden/68515/2007 (A/H4N6) segment 7 (MP)1746.20.000000e+00969/982 (98%)EPI514053A/mallard/Sweden/68509/2007 (A/H4N6) segment 7 (MP)1746.20.000000e+00969/982 (98%) Link to comment Share on other sites More sharing options...
niman Posted July 17, 2015 Author Report Share Posted July 17, 2015 AlignSegment-IDNameScoreE-ValueIdentityEPI623943A/chicken/England/26352/2015 (A/H7N7) segment 1 (PB2)4204.10.000000e+002280/2280 (100%)EPI475945A/great black-backed gull/Iceland/1110/2011 (A/H5N2) segment 1 (PB2)3977.00.000000e+002237/2280 (98%)EPI513564A/mallard/Sweden/101180/2009 (A/H4N6) segment 1 (PB2)3965.90.000000e+002235/2280 (98%)EPI513557A/mallard/Sweden/101081/2009 (A/H4N6) segment 1 (PB2)3965.90.000000e+002235/2280 (98%)EPI513543A/mallard/Sweden/100881/2009 (A/H4N6) segment 1 (PB2)3965.90.000000e+002235/2280 (98%)EPI513504A/mallard/Sweden/101431/2009 (A/H4N6) segment 1 (PB2)3965.90.000000e+002235/2280 (98%)EPI513490A/mallard/Sweden/101298/2009 (A/H4N6) segment 1 (PB2)3965.90.000000e+002235/2280 (98%)EPI513550A/mallard/Sweden/101010/2009 (A/H4N6) segment 1 (PB2)3960.30.000000e+002234/2280 (97%)EPI513518A/mallard/Sweden/101524/2009 (A/H4N6) segment 1 (PB2)3960.30.000000e+002234/2280 (97%)EPI513511A/mallard/Sweden/101504/2009 (A/H4N6) segment 1 (PB2)3960.30.000000e+002234/2280 (97%)EPI513497A/mallard/Sweden/101329/2009 (A/H4N6) segment 1 (PB2)3960.30.000000e+002234/2280 (97%)EPI513472A/mallard/Sweden/101640/2009 (A/H4N6) segment 1 (PB2)3960.30.000000e+002234/2280 (97%)EPI513412A/mallard/Sweden/101663/2009 (A/H4N6) segment 1 (PB2)3960.30.000000e+002234/2280 (97%)EPI513405A/mallard/Sweden/101658/2009 (A/H4N6) segment 1 (PB2)3960.30.000000e+002234/2280 (97%)EPI513391A/mallard/Sweden/101642/2009 (A/H4N6) segment 1 (PB2)3960.30.000000e+002234/2280 (97%)EPI513383A/mallard/Sweden/102024/2009 (A/H4N6) segment 1 (PB2)3960.30.000000e+002234/2280 (97%)EPI513376A/mallard/Sweden/102012/2009 (A/H4N6) segment 1 (PB2)3960.30.000000e+002234/2280 (97%)EPI513355A/mallard/Sweden/101799/2009 (A/H4N6) segment 1 (PB2)3960.30.000000e+002234/2280 (97%)EPI513348A/mallard/Sweden/101785/2009 (A/H4N6) segment 1 (PB2)3960.30.000000e+002234/2280 (97%)EPI513338A/mallard/Sweden/102157/2009 (A/H4N6) segment 1 (PB2)3960.30.000000e+002234/2280 (97%)EPI513331A/mallard/Sweden/102124/2009 (A/H4N6) segment 1 (PB2)3960.30.000000e+002234/2280 (97%)EPI513324A/mallard/Sweden/102114/2009 (A/H4N6) segment 1 (PB2)3960.30.000000e+002234/2280 (97%)EPI513317A/mallard/Sweden/102056/2009 (A/H4N6) segment 1 (PB2)3960.30.000000e+002234/2280 (97%)EPI513310A/mallard/Sweden/102045/2009 (A/H4N6) segment 1 (PB2)3960.30.000000e+002234/2280 (97%)EPI513303A/mallard/Sweden/102029/2009 (A/H4N6) segment 1 (PB2)3960.30.000000e+002234/2280 (97%)EPI513220A/mallard/Sweden/104793/2009 (A/H4N6) segment 1 (PB2)3960.30.000000e+002234/2280 (97%)EPI513213A/mallard/Sweden/104690/2009 (A/H4N6) segment 1 (PB2)3960.30.000000e+002234/2280 (97%)EPI513130A/mallard/Sweden/102250/2009 (A/H4N6) segment 1 (PB2)3960.30.000000e+002234/2280 (97%)EPI513465A/mallard/Sweden/101632/2009 (A/H4N6) segment 1 (PB2)3954.80.000000e+002233/2280 (97%)EPI513458A/mallard/Sweden/101603/2009 (A/H4N6) segment 1 (PB2)3954.80.000000e+002233/2280 (97%)EPI513451A/mallard/Sweden/101602/2009 (A/H4N6) segment 1 (PB2)3954.80.000000e+002233/2280 (97%)EPI513444A/mallard/Sweden/101565/2009 (A/H4N6) segment 1 (PB2)3954.80.000000e+002233/2280 (97%)EPI513437A/mallard/Sweden/101564/2009 (A/H4N6) segment 1 (PB2)3954.80.000000e+002233/2280 (97%)EPI513419A/mallard/Sweden/101733/2009 (A/H4N6) segment 1 (PB2)3954.80.000000e+002233/2280 (97%)EPI513398A/mallard/Sweden/101654/2009 (A/H4N6) segment 1 (PB2)3954.80.000000e+002233/2280 (97%)EPI513362A/mallard/Sweden/101831/2009 (A/H4N6) segment 1 (PB2)3954.80.000000e+002233/2280 (97%)EPI513227A/mallard/Sweden/104831/2009 (A/H4N6) segment 1 (PB2)3954.80.000000e+002233/2280 (97%)EPI513174A/mallard/Sweden/105012/2009 (A/H4N6) segment 1 (PB2)3954.80.000000e+002233/2280 (97%)EPI316757A/mallard/Czech Republic/13577-24K/2010 (A/H3N8) segment 1 (PB2)3954.80.000000e+002233/2280 (97%)EPI514904A/mallard/Sweden/105093/2009 (A/H4N6) segment 1 (PB2)3949.30.000000e+002232/2280 (97%)EPI513248A/mallard/Sweden/104931/2009 (A/H4N6) segment 1 (PB2)3949.30.000000e+002232/2280 (97%)EPI513234A/mallard/Sweden/104839/2009 (A/H4N6) segment 1 (PB2)3949.30.000000e+002232/2280 (97%)EPI513181A/mallard/Sweden/105137/2009 (A/H4N6) segment 1 (PB2)3949.30.000000e+002232/2280 (97%)EPI513167A/mallard/Sweden/105011/2009 (A/H4N6) segment 1 (PB2)3949.30.000000e+002232/2280 (97%)EPI513345A/mallard/Sweden/104681/2009 (A/H4N6) segment 1 (PB2)3943.70.000000e+002231/2280 (97%)EPI513188A/mallard/Sweden/105516/2009 (A/H4N6) segment 1 (PB2)3938.20.000000e+002230/2280 (97%)EPI618619A/mallard/Sweden/133546/2011 (A/H10N4) segment 1 (PB2)3932.60.000000e+002229/2280 (97%)EPI398919A/common gull/Norway/10_1602/2009 (A/H6N8) segment 1 (PB2)3932.60.000000e+002229/2280 (97%)EPI378025A/mallard/Netherlands/1/2010 (A/H2N3) segment 1 (PB2)3927.10.000000e+002228/2280 (97%)EPI618330A/mallard/Sweden/100878/2009 (A/H11N9) segment 1 (PB2)3921.60.000000e+002227/2280 (97%)EPI618480A/mallard/Sweden/101011/2009 (A/H11N9) segment 1 (PB2)3916.00.000000e+002226/2280 (97%)EPI514962A/mallard/Sweden/79391/2008 (A/H4N2) segment 1 (PB2)3910.50.000000e+002225/2280 (97%)EPI513902A/mallard/Sweden/79308/2008 (A/H4N2) segment 1 (PB2)3910.50.000000e+002225/2280 (97%)EPI513895A/mallard/Sweden/79230/2008 (A/H0) segment 1 (PB2)3910.50.000000e+002225/2280 (97%)EPI513865A/mallard/Sweden/79367/2008 (A/H4N6) segment 1 (PB2)3910.50.000000e+002225/2280 (97%)EPI513851A/mallard/Sweden/79332/2008 (A/H4N6) segment 1 (PB2)3910.50.000000e+002225/2280 (97%)EPI513828A/mallard/Sweden/79328/2008 (A/H4N6) segment 1 (PB2)3910.50.000000e+002225/2280 (97%)EPI513826A/mallard/Sweden/79956/2008 (A/H0) segment 1 (PB2)3910.50.000000e+002225/2280 (97%)EPI513805A/mallard/Sweden/79412/2008 (A/H4N6) segment 1 (PB2)3910.50.000000e+002225/2280 (97%)EPI513798A/mallard/Sweden/79388/2008 (A/H4N6) segment 1 (PB2)3910.50.000000e+002225/2280 (97%)EPI513760A/mallard/Sweden/79981/2008 (A/H4N6) segment 1 (PB2)3910.50.000000e+002225/2280 (97%)EPI513728A/mallard/Sweden/80078/2008 (A/H4N6) segment 1 (PB2)3910.50.000000e+002225/2280 (97%)EPI513707A/mallard/Sweden/80051/2008 (A/H4N6) segment 1 (PB2)3910.50.000000e+002225/2280 (97%)EPI513690A/mallard/Sweden/80173/2008 (A/H4N6) segment 1 (PB2)3910.50.000000e+002225/2280 (97%)EPI513676A/mallard/Sweden/80148/2008 (A/H4N6) segment 1 (PB2)3910.50.000000e+002225/2280 (97%)EPI513669A/mallard/Sweden/80127/2008 (A/H4N6) segment 1 (PB2)3910.50.000000e+002225/2280 (97%)EPI513662A/mallard/Sweden/80114/2008 (A/H4N2) segment 1 (PB2)3910.50.000000e+002225/2280 (97%)EPI513646A/mallard/Sweden/80260/2008 (A/H4N6) segment 1 (PB2)3910.50.000000e+002225/2280 (97%)EPI513610A/mallard/Sweden/80178/2008 (A/H4N6) segment 1 (PB2)3910.50.000000e+002225/2280 (97%)EPI513565A/mallard/Sweden/80299/2008 (A/H4N6) segment 1 (PB2)3910.50.000000e+002225/2280 (97%)EPI513887A/mallard/Sweden/79187/2008 (A/H4N6) segment 1 (PB2)3904.90.000000e+002224/2280 (97%)EPI513791A/mallard/Sweden/79375/2008 (A/H4N6) segment 1 (PB2)3904.90.000000e+002224/2280 (97%)EPI513781A/mallard/Sweden/80010/2008 (A/H4N6) segment 1 (PB2)3904.90.000000e+002224/2280 (97%)EPI513774A/mallard/Sweden/80009/2008 (A/H4N6) segment 1 (PB2)3904.90.000000e+002224/2280 (97%)EPI513767A/mallard/Sweden/79998/2008 (A/H4N6) segment 1 (PB2)3904.90.000000e+002224/2280 (97%)EPI513714A/mallard/Sweden/80063/2008 (A/H4N6) segment 1 (PB2)3904.90.000000e+002224/2280 (97%)EPI513700A/mallard/Sweden/80014/2008 (A/H4N6) segment 1 (PB2)3904.90.000000e+002224/2280 (97%)EPI513617A/mallard/Sweden/80185/2008 (A/H4N6) segment 1 (PB2)3904.90.000000e+002224/2280 (97%)EPI513581A/mallard/Sweden/80389/2008 (A/H4N6) segment 1 (PB2)3904.90.000000e+002225/2281 (97%)EPI618938A/mallard/Sweden/101165/2009 (A/H8N4) segment 1 (PB2)3899.40.000000e+002223/2280 (97%)EPI513596A/mallard/Sweden/81019/2008 (A/H4N6) segment 1 (PB2)3899.40.000000e+002223/2280 (97%)EPI476125A/greylag goose/Iceland/0953/2011 (A/H6N5) segment 1 (PB2)3882.80.000000e+002220/2280 (97%)EPI476082A/greylag goose/Iceland/0948/2011 (A/H6N5) segment 1 (PB2)3882.80.000000e+002220/2280 (97%)EPI476029A/greylag goose/Iceland/1459/2011 (A/H6N5) segment 1 (PB2)3882.80.000000e+002221/2281 (97%)EPI372328A/shoveler/Egypt/00134-NAMRU3/2005 (A/H1N1) segment 1 (PB2)3851.40.000000e+002214/2280 (97%)EPI222084A/garganey/Altai/1213/2007 (A/H5N2) segment 1 (PB2)3832.90.000000e+002211/2280 (96%)EPI490869A/turkey/Germany-NI/R534/2013 (A/H7N7) segment 1 (PB2)3810.80.000000e+002206/2280 (96%)EPI221960A/environment/Dongting Lake/Hunan/3-9/2007 (A/H10N8) segment 1 (PB2)3799.70.000000e+002205/2280 (96%)EPI221952A/water/Dongting Lake/Hunan/3-9/2007 (A/H10N8) segment 1 (PB2)3799.70.000000e+002205/2280 (96%)EPI527546A/common shelduck/Mongolia/2185/2011 (A/H3N8) segment 1 (PB2)3794.10.000000e+002204/2280 (96%)EPI401294A/wild duck/Korea/CSM4-28/2010 (A/H4N6) segment 1 (PB2)3794.10.000000e+002205/2281 (96%)EPI221968A/environment/Dongting Lake/Hunan/3-9/2007 (A/H10N8) segment 1 (PB2)3794.10.000000e+002205/2281 (96%)EPI401308A/duck/Korea/DY104/2007 (A/H4N6) segment 1 (PB2)3788.60.000000e+002204/2281 (96%)EPI221976A/environment/Dongting Lake/Hunan/3-9/2007 (A/H10N8) segment 1 (PB2)3788.60.000000e+002204/2281 (96%)EPI527561A/common goldeneye/Mongolia/1271/2010 (A/H7N1) segment 1 (PB2)3772.00.000000e+002200/2280 (96%)EPI513573A/mallard/Sweden/80348/2008 (A/H0) segment 1 (PB2)3772.00.000000e+002200/2280 (96%)EPI399891A/aquatic bird/Korea/CN5/2009 (A/H6N5) segment 1 (PB2)3772.00.000000e+002200/2280 (96%)EPI314734A/aquatic bird/Korea/CN5/2009 (A/H6N5) segment 1 (PB2)3772.00.000000e+002200/2280 (96%)EPI269315A/mallard/Jiangxi/4408/2005 (A/H6N8) segment 1 (PB2)3772.00.000000e+002200/2280 (96%)EPI527565A/ruddy shelduck/Mongolia/1189/2010 (A/H7N1) segment 1 (PB2)3766.40.000000e+002199/2280 (96%) Link to comment Share on other sites More sharing options...
niman Posted July 17, 2015 Author Report Share Posted July 17, 2015 AlignSegment-IDNameScoreE-ValueIdentityEPI623944A/chicken/England/26352/2015 (A/H7N7) segment 2 (PB1)4209.60.000000e+002279/2279 (100%)EPI618617A/mallard/Sweden/133546/2011 (A/H10N4) segment 2 (PB1)4098.80.000000e+002259/2279 (99%)EPI618043A/mallard/Republic of Georgia/12/2011 (A/H10N4) segment 2 (PB1)4004.70.000000e+002242/2279 (98%)EPI617899A/mallard/Republic of Georgia/1/2012 (A/H1N1) segment 2 (PB1)3988.00.000000e+002239/2279 (98%)EPI617988A/mallard/Republic of Georgia/3/2011 (A/H3N8) segment 2 (PB1)3982.50.000000e+002238/2279 (98%)EPI617760A/mallard/Republic of Georgia/14/2011 (A/H10N7) segment 2 (PB1)3977.00.000000e+002237/2279 (98%)EPI514974A/mallard/Sweden/80261/2008 (A/H4N9) segment 2 (PB1)3960.30.000000e+002234/2279 (98%)EPI464920A/guinea fowl/Italy/10VIR-218-134/2010 (A/H5N2) segment 2 (PB1)3954.80.000000e+002223/2264 (98%)EPI560057A/mallard/Novomychalivka/2-23-12/2010 (A/H15N7) segment 2 (PB1)3910.50.000000e+002222/2274 (97%)EPI617954A/Mediterranean gull/Republic of Georgia/1/2011 (A/H9N3) segment 2 (PB1)3899.40.000000e+002223/2279 (97%)EPI617793A/yellow-legged gull/Republic of Georgia/1/2012 (A/H0) segment 2 (PB1)3899.40.000000e+002223/2279 (97%)EPI372361A/shoveler/Egypt/14879-NAMRU3/2006 (A/H7N1) segment 2 (PB1)3893.90.000000e+002216/2270 (97%)EPI182047A/common eider/Netherlands/1/2006 (A/H3N8) segment 2 (PB1)3888.30.000000e+002221/2279 (97%)EPI464928A/chicken/Italy/11VIR-7548/2011 (A/H5N2) segment 2 (PB1)3882.80.000000e+002214/2270 (97%)EPI617820A/tufted duck/Republic of Georgia/1/2012 (A/H2N3) segment 2 (PB1)3849.50.000000e+002214/2279 (97%)EPI464944A/chicken/Italy/12VIR-7785-67/2012 (A/H5N2) segment 2 (PB1)3827.40.000000e+002204/2270 (97%)EPI464936A/turkey/Italy/12VIR-6607-5/2012 (A/H5N2) segment 2 (PB1)3827.40.000000e+002204/2270 (97%)EPI464952A/turkey/Italy/12VIR-8036-2/2012 (A/H5N2) segment 2 (PB1)3821.80.000000e+002203/2270 (97%)EPI618937A/mallard/Sweden/101165/2009 (A/H8N4) segment 2 (PB1)3794.10.000000e+002204/2279 (96%)EPI618407A/mallard/Sweden/101589/2009 (A/H11N9) segment 2 (PB1)3794.10.000000e+002204/2279 (96%)EPI345434A/Larus argentatus/Belgium/02936cls9/2010 (A/H5N2) segment 2 (PB1)3790.40.000000e+002192/2262 (96%)EPI618605A/mallard/Sweden/107688/2009 (A/H10N1) segment 2 (PB1)3788.60.000000e+002203/2279 (96%)EPI211183A/mallard/Poland/16/09 (A/H7N7) segment 2 (PB1)3788.60.000000e+002203/2279 (96%)EPI378008A/mallard/Netherlands/29/2010 (A/H2N3) segment 2 (PB1)3783.10.000000e+002204/2281 (96%)EPI618651A/mallard/Sweden/69794/2007 (A/H12N5) segment 2 (PB1)3777.50.000000e+002201/2279 (96%)EPI618636A/mallard/Sweden/68529/2007 (A/H12N5) segment 2 (PB1)3777.50.000000e+002201/2279 (96%)EPI618622A/mallard/Sweden/60069/2007 (A/H12N5) segment 2 (PB1)3777.50.000000e+002201/2279 (96%)EPI387542A/white-fronted goose/Mongolia/1-125/2008 (A/H3N8) segment 2 (PB1)3772.00.000000e+002195/2271 (96%)EPI475930A/mallard/Iceland/1007/2011 (A/H3N6) segment 2 (PB1)3766.40.000000e+002199/2279 (96%)EPI618448A/mallard/Sweden/101993/2009 (A/H2N9) segment 2 (PB1)3749.80.000000e+002197/2280 (96%)EPI457917A/duck/Guangxi/GXd-4/2011 (A/H1N2) segment 2 (PB1)3749.80.000000e+002196/2279 (96%)EPI618014A/mallard/Republic of Georgia/4/2010 (A/H1N1) segment 2 (PB1)3744.30.000000e+002196/2280 (96%)EPI439584A/avian/Israel/289/2001 (A/H6N2) segment 2 (PB1)3744.30.000000e+002195/2279 (96%)EPI475944A/great black-backed gull/Iceland/1110/2011 (A/H5N2) segment 2 (PB1)3738.70.000000e+002195/2280 (96%)EPI367587A/mallard/Czech Republic/15008-11K/2009 (A/H5N3) segment 2 (PB1)3738.70.000000e+002194/2279 (96%)EPI485721A/mallard/Sweden/49/2002 (A/H5N9) segment 2 (PB1)3733.20.000000e+002193/2279 (96%)EPI236192A/mallard/Sweden/49/2002 (A/H5N9) segment 2 (PB1)3733.20.000000e+002193/2279 (96%)EPI439586A/avian/Israel/320/2001 (A/H6N2) segment 2 (PB1)3729.50.000000e+002192/2279 (96%)EPI457909A/duck/Guangxi/GXd-1/2011 (A/H1N2) segment 2 (PB1)3727.70.000000e+002192/2279 (96%)EPI618214A/mallard/Sweden/1689/2002 (A/H7N7) segment 2 (PB1)3716.60.000000e+002191/2280 (96%)EPI618201A/mallard/Sweden/1645/2002 (A/H7N7) segment 2 (PB1)3716.60.000000e+002191/2280 (96%)EPI617059A/mallard/Sweden/1671/2002 (A/H7N7) segment 2 (PB1)3716.60.000000e+002191/2280 (96%)EPI433380A/mallard/Czech Republic/15902-18K/2009 (A/H6N9) segment 2 (PB1)3716.60.000000e+002191/2280 (96%)EPI377795A/mallard/Sweden/57/2002 (A/H2N3) segment 2 (PB1)3716.60.000000e+002192/2281 (96%)EPI367595A/mallard/Czech Republic/15962-1T/2010 (A/H6N9) segment 2 (PB1)3716.60.000000e+002191/2280 (96%)EPI284355A/mallard/Czech Republic/15902-17K/2009 (A/H6N2) segment 2 (PB1)3716.60.000000e+002191/2280 (96%)EPI618644A/mallard/Sweden/366/2002 (A/H11N9) segment 2 (PB1)3711.00.000000e+002190/2280 (96%)EPI618139A/mallard/Sweden/1690/2002 (A/H7N7) segment 2 (PB1)3711.00.000000e+002191/2281 (96%)EPI485608A/mallard/Sweden/16/2002 (A/H12N9) segment 2 (PB1)3711.00.000000e+002190/2280 (96%)EPI527622A/mallard/Mongolia/1581/2010 (A/H3N8) segment 2 (PB1)3705.50.000000e+002189/2280 (96%)EPI619137A/mallard/Sweden/7996/2005 (A/H8N4) segment 2 (PB1)3701.80.000000e+002188/2279 (96%)EPI618135A/mallard/Sweden/6039/2005 (A/H10N4) segment 2 (PB1)3701.80.000000e+002188/2279 (96%)EPI527631A/mallard /Mongolia/1551/2010 (A/H3N1) segment 2 (PB1)3700.00.000000e+002189/2281 (95%)EPI514743A/mallard/Sweden/4508/2004 (A/H4N6) segment 2 (PB1)3700.00.000000e+002189/2281 (95%)EPI335410A/aquatic bird/Korea/CN17/2009 (A/H6N2) segment 2 (PB1)3700.00.000000e+002188/2280 (95%)EPI173879A/goose/Italy/296426/2003 (A/H1N1) segment 2 (PB1)3700.00.000000e+002188/2280 (95%)EPI167837A/goose/Italy/296426/2003 (A/H1N1) segment 2 (PB1)3700.00.000000e+002188/2280 (95%)EPI141394A/duck/Italy/4609/2003 (A/H7N2) segment 2 (PB1)3700.00.000000e+002190/2282 (95%)EPI619144A/mallard/Sweden/8005/2005 (A/H8N4) segment 2 (PB1)3696.30.000000e+002187/2279 (95%)EPI618848A/mallard/Sweden/8023/2005 (A/H10N4) segment 2 (PB1)3696.30.000000e+002188/2280 (95%)EPI377678A/mallard/Sweden/99/2002 (A/H2N3) segment 2 (PB1)3694.40.000000e+002187/2280 (95%)EPI336987A/duck/Zhejiang/2245/2011 (A/H5N1) segment 2 (PB1)3694.40.000000e+002181/2271 (96%)EPI285821A/avian/Egypt/920431/2006 (A/H9N2) segment 2 (PB1)3694.40.000000e+002188/2281 (95%)EPI619151A/mallard/Sweden/50055/2006 (A/H8N4) segment 2 (PB1)3690.70.000000e+002186/2279 (95%)EPI618913A/mallard/Sweden/51726/2006 (A/H10N4) segment 2 (PB1)3688.90.000000e+002186/2280 (95%)EPI618885A/mallard/Sweden/51619/2006 (A/H10N4) segment 2 (PB1)3688.90.000000e+002186/2280 (95%)EPI439580A/avian/Israel/824/2005 (A/H10N2) segment 2 (PB1)3688.90.000000e+002185/2279 (95%)EPI377662A/mallard/Sweden/6/2002 (A/H2N3) segment 2 (PB1)3688.90.000000e+002186/2280 (95%)EPI251767A/mallard/Sweden/6/2002 (A/H2N3) segment 2 (PB1)3688.90.000000e+002186/2280 (95%)EPI618068A/mallard/Sweden/8004/2005 (A/H10N4) segment 2 (PB1)3685.20.000000e+002185/2279 (95%)EPI181975A/common teal/Netherlands/1/2005 (A/H8N4) segment 2 (PB1)3685.20.000000e+002185/2279 (95%)EPI619291A/mallard/Sweden/1985/2003 (A/H7N7) segment 2 (PB1)3683.30.000000e+002185/2280 (95%)EPI619286A/mallard/Sweden/1997/2003 (A/H7N7) segment 2 (PB1)3683.30.000000e+002185/2280 (95%)EPI619276A/mallard/Sweden/2003/2003 (A/H7N7) segment 2 (PB1)3683.30.000000e+002185/2280 (95%)EPI619269A/mallard/Sweden/2001/2003 (A/H7N7) segment 2 (PB1)3683.30.000000e+002185/2280 (95%)EPI619230A/mallard/Sweden/3331/2003 (A/H7N7) segment 2 (PB1)3683.30.000000e+002185/2280 (95%)EPI619223A/mallard/Sweden/3329/2003 (A/H7N7) segment 2 (PB1)3683.30.000000e+002185/2280 (95%)EPI618204A/mallard/Sweden/3269/2003 (A/H7N7) segment 2 (PB1)3683.30.000000e+002185/2280 (95%)EPI618163A/mallard/Sweden/1983/2003 (A/H7N7) segment 2 (PB1)3683.30.000000e+002185/2280 (95%)EPI618152A/mallard/Sweden/1978/2003 (A/H7N7) segment 2 (PB1)3683.30.000000e+002185/2280 (95%)EPI617113A/mallard/Sweden/1962/2003 (A/H7N7) segment 2 (PB1)3683.30.000000e+002185/2280 (95%)EPI617103A/mallard/Sweden/1981/2003 (A/H7N7) segment 2 (PB1)3683.30.000000e+002185/2280 (95%)EPI617076A/mallard/Sweden/1972/2003 (A/H7N7) segment 2 (PB1)3683.30.000000e+002185/2280 (95%)EPI617061A/mallard/Sweden/1970/2003 (A/H7N7) segment 2 (PB1)3683.30.000000e+002185/2280 (95%)EPI617047A/mallard/Sweden/1967/2003 (A/H7N7) segment 2 (PB1)3683.30.000000e+002185/2280 (95%)EPI617033A/mallard/Sweden/1965/2003 (A/H7N7) segment 2 (PB1)3683.30.000000e+002185/2280 (95%)EPI514671A/mallard/Sweden/7582/2003 (A/H4N6) segment 2 (PB1)3683.30.000000e+002186/2281 (95%)EPI485651A/mallard/Sweden/64/2003 (A/H7N7) segment 2 (PB1)3683.30.000000e+002185/2280 (95%)EPI377772A/mallard/Sweden/30/2002 (A/H2N5) segment 2 (PB1)3683.30.000000e+002186/2281 (95%)EPI372273A/teal/Egypt/20431-NAMRU3/2003 (A/H1N2) segment 2 (PB1)3683.30.000000e+002180/2272 (95%)EPI229961A/duck/France/05057b/2005 (A/H5N2) segment 2 (PB1)3683.30.000000e+002180/2272 (95%)EPI169291A/duck/France/05057b/2005 (A/H5N2) segment 2 (PB1)3683.30.000000e+002180/2272 (95%)EPI60647A/quail/Italy/4610/2003 (A/H7N2) segment 2 (PB1)3683.30.000000e+002188/2283 (95%)EPI619182A/mallard/Sweden/124987/2010 (A/H7N7) segment 2 (PB1)3677.80.000000e+002184/2280 (95%)EPI618966A/mallard/Sweden/1417/2002 (A/H10N7) segment 2 (PB1)3677.80.000000e+002184/2280 (95%)EPI618191A/mallard/Sweden/2051/2003 (A/H7N7) segment 2 (PB1)3677.80.000000e+002184/2280 (95%)EPI618177A/mallard/Sweden/2027/2003 (A/H7N7) segment 2 (PB1)3677.80.000000e+002184/2280 (95%)EPI617090A/mallard/Sweden/1975/2003 (A/H7N7) segment 2 (PB1)3677.80.000000e+002184/2280 (95%)EPI514681A/mallard/Sweden/5714/2005 (A/H4N6) segment 2 (PB1)3677.80.000000e+002184/2280 (95%)EPI336010A/teal/Chany/444/2009 (A/H8N8) segment 2 (PB1)3677.80.000000e+002178/2271 (95%) Link to comment Share on other sites More sharing options...
niman Posted July 17, 2015 Author Report Share Posted July 17, 2015 AlignSegment-IDNameScoreE-ValueIdentityEPI623937A/chicken/England/26352/2015 (A/H7N7) segment 3 (PA)3962.20.000000e+002151/2151 (100%)EPI511324A/mallard/Sweden/124418/2010 (A/H4N6) segment 3 (PA)3744.30.000000e+002109/2151 (98%)EPI511323A/mallard/Sweden/124228/2010 (A/H4N6) segment 3 (PA)3744.30.000000e+002109/2151 (98%)EPI613877A/mallard/Sweden/101165/2009 (A/H8N4) segment 3 (PA)3738.70.000000e+002108/2151 (98%)EPI511213A/mallard/Sweden/68575/2007 (A/H4N6) segment 3 (PA)3683.30.000000e+002098/2151 (97%)EPI613905A/mallard/Sweden/64476/2007 (A/H10N4) segment 3 (PA)3677.80.000000e+002097/2151 (97%)EPI314407A/mallard/Czech Republic/14516/2007 (A/H3N8) segment 3 (PA)3677.80.000000e+002097/2151 (97%)EPI511211A/mallard/Sweden/68571/2007 (A/H4N6) segment 3 (PA)3666.70.000000e+002095/2151 (97%)EPI511209A/mallard/Sweden/68551/2007 (A/H4N2) segment 3 (PA)3666.70.000000e+002095/2151 (97%)EPI613907A/mallard/Sweden/69777/2007 (A/H10N6) segment 3 (PA)3661.20.000000e+002094/2151 (97%)EPI511230A/mallard/Sweden/68677/2007 (A/H0) segment 3 (PA)3661.20.000000e+002094/2151 (97%)EPI511220A/mallard/Sweden/68940/2007 (A/H4N2) segment 3 (PA)3661.20.000000e+002094/2151 (97%)EPI511210A/mallard/Sweden/68561/2007 (A/H4N6) segment 3 (PA)3661.20.000000e+002094/2151 (97%)EPI182054A/turnstone/Netherlands/1/2007 (A/H3N8) segment 3 (PA)3661.20.000000e+002094/2151 (97%)EPI613908A/mallard/Sweden/69792/2007 (A/H10N5) segment 3 (PA)3655.60.000000e+002093/2151 (97%)EPI613906A/mallard/Sweden/69773/2007 (A/H10N5) segment 3 (PA)3655.60.000000e+002093/2151 (97%)EPI573504A/Anas platyrhynchos/Spain/1877/2009 (A/H7N2) segment 3 (PA)3655.60.000000e+002093/2151 (97%)EPI181950A/mallard/Netherlands/14/2007 (A/H2N2) segment 3 (PA)3655.60.000000e+002093/2151 (97%)EPI105953A/Bewick's swan/Netherlands/2/2005 (A/H6N8) segment 3 (PA)3655.60.000000e+002093/2151 (97%)EPI377628A/mallard/Netherlands/14/2007 (A/H2N2) segment 3 (PA)3650.10.000000e+002092/2151 (97%)EPI511085A/mallard/Sweden/80261/2008 (A/H4N9) segment 3 (PA)3644.60.000000e+002091/2151 (97%)EPI377991A/mallard/Netherlands/58/2008 (A/H2N3) segment 3 (PA)3644.60.000000e+002091/2151 (97%)EPI284348A/goose/Czech Republic/1848-T14/2009 (A/H7N9) segment 3 (PA)3644.60.000000e+002091/2151 (97%)EPI215508A/goose/Czech Republic/1848/2009 (A/H7N9) segment 3 (PA)3644.60.000000e+002091/2151 (97%)EPI377983A/mallard/Netherlands/37/2008 (A/H2N3) segment 3 (PA)3639.00.000000e+002090/2151 (97%)EPI613937A/mallard/Sweden/68529/2007 (A/H12N5) segment 3 (PA)3633.50.000000e+002090/2152 (97%)EPI511188A/mallard/Sweden/52870/2006 (A/H4N6) segment 3 (PA)3633.50.000000e+002089/2151 (97%)EPI613936A/mallard/Sweden/60069/2007 (A/H12N5) segment 3 (PA)3627.90.000000e+002089/2152 (97%)EPI511254A/mallard/Sweden/80069/2008 (A/H4N6) segment 3 (PA)3627.90.000000e+002088/2151 (97%)EPI511236A/mallard/Sweden/79333/2008 (A/H4N2) segment 3 (PA)3627.90.000000e+002088/2151 (97%)EPI511231A/mallard/Sweden/79316/2008 (A/H4N2) segment 3 (PA)3627.90.000000e+002088/2151 (97%)EPI613973A/mallard/Sweden/79983/2008 (A/H11N9) segment 3 (PA)3622.40.000000e+002088/2152 (97%)EPI613969A/mallard/Sweden/80253/2008 (A/H11N9) segment 3 (PA)3622.40.000000e+002087/2151 (97%)EPI613938A/mallard/Sweden/69794/2007 (A/H12N5) segment 3 (PA)3622.40.000000e+002088/2152 (97%)EPI511082A/mallard/Sweden/79261/2008 (A/H0) segment 3 (PA)3622.40.000000e+002087/2151 (97%)EPI613975A/mallard/Sweden/79369/2008 (A/H11N9) segment 3 (PA)3616.90.000000e+002087/2152 (96%)EPI613974A/mallard/Sweden/79984/2008 (A/H11N9) segment 3 (PA)3616.90.000000e+002086/2151 (96%)EPI613972A/mallard/Sweden/79436/2008 (A/H11N9) segment 3 (PA)3616.90.000000e+002086/2151 (96%)EPI613970A/mallard/Sweden/80079/2008 (A/H11N9) segment 3 (PA)3616.90.000000e+002086/2151 (96%)EPI613876A/mallard/Sweden/99377/2009 (A/H8N4) segment 3 (PA)3616.90.000000e+002086/2151 (96%)EPI511275A/mallard/Sweden/93225/2009 (A/H4N6) segment 3 (PA)3616.90.000000e+002088/2153 (96%)EPI511274A/mallard/Sweden/93211/2009 (A/H4N6) segment 3 (PA)3616.90.000000e+002088/2153 (96%)EPI613977A/mallard/Sweden/79416/2008 (A/H11N9) segment 3 (PA)3611.30.000000e+002086/2152 (96%)EPI613956A/mallard/Sweden/101589/2009 (A/H11N9) segment 3 (PA)3611.30.000000e+002085/2151 (96%)EPI613957A/mallard/Sweden/101435/2009 (A/H11N9) segment 3 (PA)3600.20.000000e+002083/2151 (96%)EPI613954A/mallard/Sweden/101574/2009 (A/H11N9) segment 3 (PA)3600.20.000000e+002083/2151 (96%)EPI613940A/mallard/Sweden/101558/2009 (A/H0) segment 3 (PA)3600.20.000000e+002084/2152 (96%)EPI613987A/mallard/Sweden/101490/2009 (A/H11N9) segment 3 (PA)3594.70.000000e+002082/2151 (96%)EPI614252A/mallard/Republic of Georgia/3/2011 (A/H3N8) segment 3 (PA)3589.20.000000e+002081/2151 (96%)EPI511303A/mallard/Sweden/101900/2009 (A/H4N3) segment 3 (PA)3589.20.000000e+002081/2151 (96%)EPI228496A/Eurasian wigeon/Sweden/1/2004 (A/H6N2) segment 3 (PA)3578.10.000000e+002079/2151 (96%)EPI316759A/mallard/Czech Republic/13577-24K/2010 (A/H3N8) segment 3 (PA)3572.50.000000e+002079/2152 (96%)EPI511129A/mallard/Sweden/7925/2005 (A/H4N6) segment 3 (PA)3561.50.000000e+002076/2151 (96%)EPI296557A/dunlin/Sweden/1/2005 (A/H4N6) segment 3 (PA)3561.50.000000e+002076/2151 (96%)EPI63213A/turkey/Italy/1325/2005 (A/H5N2) segment 3 (PA)3550.40.000000e+002075/2152 (96%)EPI60683A/turkey/Italy/1258/2005 (A/H5N2) segment 3 (PA)3550.40.000000e+002075/2152 (96%)EPI169429A/chicken/Belgium/150VB/1999 (A/H5N2) segment 3 (PA)3495.00.000000e+002064/2151 (95%)EPI511108A/mallard/Sweden/3271/2003 (A/H4N6) segment 3 (PA)3467.30.000000e+002060/2152 (95%)EPI511107A/mallard/Sweden/3223/2003 (A/H4N6) segment 3 (PA)3467.30.000000e+002060/2152 (95%)EPI511102A/mallard/Sweden/1869/2003 (A/H4N6) segment 3 (PA)3467.30.000000e+002060/2152 (95%)EPI485552A/greylag goose/Netherlands/1/1999 (A/H6N2) segment 3 (PA)3467.30.000000e+002059/2151 (95%)EPI118311A/mallard/Italy/36/2002 (A/H5N3) segment 3 (PA)3467.30.000000e+002060/2152 (95%)EPI251776A/mallard/Sweden/62/2003 (A/H4N6) segment 3 (PA)3463.60.000000e+002059/2152 (95%)EPI511106A/mallard/Sweden/3221/2003 (A/H4N6) segment 3 (PA)3461.70.000000e+002059/2152 (95%)EPI511103A/mallard/Sweden/1883/2003 (A/H4N3) segment 3 (PA)3461.70.000000e+002059/2152 (95%)EPI229962A/duck/France/05057b/2005 (A/H5N2) segment 3 (PA)3461.70.000000e+002060/2153 (95%)EPI169292A/duck/France/05057b/2005 (A/H5N2) segment 3 (PA)3461.70.000000e+002060/2153 (95%)EPI485674A/Eurasian wigeon/Netherlands/4/2000 (A/H6N2) segment 3 (PA)3450.70.000000e+002057/2152 (95%)EPI251741A/mallard/Sweden/52/2003 (A/H6N2) segment 3 (PA)3450.70.000000e+002057/2152 (95%)EPI118307A/mallard/Italy/37/2002 (A/H5N3) segment 3 (PA)3450.70.000000e+002057/2152 (95%)EPI169332A/Anas platyrhynchos/Belgium/12827/2007 (A/H3N8) segment 3 (PA)3445.10.000000e+002058/2154 (95%)EPI102409A/chicken/Taiwan/165/99 (A/H6N1) segment 3 (PA)3434.00.000000e+002053/2151 (95%)EPI613941A/mallard/Sweden/101754/2009 (A/H0) segment 3 (PA)3428.50.000000e+002053/2152 (95%)EPI485735A/mallard/Sweden/64/2002 (A/H5N2) segment 3 (PA)3423.00.000000e+002051/2151 (95%)EPI485531A/whitefronted goose/Netherlands/22/1999 (A/H2N2) segment 3 (PA)3423.00.000000e+002051/2151 (95%)EPI377613A/white fronted goose/Netherlands/22/1999 (A/H2N2) segment 3 (PA)3423.00.000000e+002051/2151 (95%)EPI3391A/duck/Hokkaido/84/2002 (A/H5N3) segment 3 (PA)3423.00.000000e+002051/2151 (95%)EPI222062A/gadwall/Altai/1325/2007 (A/H3N8) segment 3 (PA)3417.40.000000e+002051/2152 (95%)EPI222054A/gadwall/Altai/1324/2007 (A/H3N8) segment 3 (PA)3417.40.000000e+002051/2152 (95%)EPI1740A/duck/Hokkaido/9/99 (A/H9N2) segment 3 (PA)3417.40.000000e+002050/2151 (95%)EPI511172A/mallard/Sweden/52299/2006 (A/H4N6) segment 3 (PA)3411.90.000000e+002049/2151 (95%)EPI321565A/duck/Shimane/188/1999 (A/H1N1) segment 3 (PA)3411.90.000000e+002049/2151 (95%)EPI251624A/mallard/Netherlands/1/1999 (A/H4N6) segment 3 (PA)3411.90.000000e+002049/2151 (95%)EPI10147A/chicken/Iran/11T/99 (A/H9N2) segment 3 (PA)3410.00.000000e+002035/2130 (95%)EPI533743A/Caspian seal/Russia/T1/2012 (A/H4N6) segment 3 (PA)3406.30.000000e+002049/2152 (95%)EPI533742A/Caspian seal/Russia/1884/2002 (A/H4N6) segment 3 (PA)3406.30.000000e+002049/2152 (95%)EPI505372A/turkey/Italy/1083/1999 (A/H7N1) segment 3 (PA)3406.30.000000e+002049/2152 (95%)EPI505365A/turkey/Italy/1555/1999 (A/H7N1) segment 3 (PA)3406.30.000000e+002049/2152 (95%)EPI505363A/turkey/Italy/1086/1999 (A/H7N1) segment 3 (PA)3406.30.000000e+002049/2152 (95%)EPI505361A/chicken/Italy/1081/1999 (A/H7N1) segment 3 (PA)3406.30.000000e+002049/2152 (95%)EPI471119A/chicken/Iran/ZMT-101/1998 (A/H9N2) segment 3 (PA)3406.30.000000e+002050/2153 (95%)EPI439595A/avian/Israel/297/2001 (A/H10N7) segment 3 (PA)3406.30.000000e+002050/2153 (95%)EPI327347A/turkey/Italy/1067/1999 (A/H7N1) segment 3 (PA)3406.30.000000e+002049/2152 (95%)EPI327340A/chicken/Italy/1391/1999 (A/H7N1) segment 3 (PA)3406.30.000000e+002049/2152 (95%)EPI326821A/environment/Korea/ESD11/2003 (A/H3N2) segment 3 (PA)3406.30.000000e+002048/2151 (95%)EPI69227A/turkey/Italy/1265/99 (A/H7N1) segment 3 (PA)3406.30.000000e+002049/2152 (95%)EPI439593A/avian/Israel/232/2001 (A/H10N7) segment 3 (PA)3404.50.000000e+002051/2154 (95%)EPI439592A/avian/Israel/218/2000 (A/H10N7) segment 3 (PA)3402.60.000000e+002049/2153 (95%)EPI511222A/mallard/Sweden/69580/2007 (A/H0) segment 3 (PA)3400.80.000000e+002048/2152 (95%)EPI439598A/avian/Israel/320/2001 (A/H6N2) segment 3 (PA)3400.80.000000e+002047/2151 (95%) Link to comment Share on other sites More sharing options...
niman Posted July 17, 2015 Author Report Share Posted July 17, 2015 AlignSegment-IDNameScoreE-ValueIdentityEPI623940A/chicken/England/26352/2015 (A/H7N7) segment 5 (NP)2761.90.000000e+001497/1497 (100%)EPI345429A/Larus argentatus/Belgium/02936cls9/2010 (A/H5N2) segment 5 (NP)2612.30.000000e+001464/1490 (98%)EPI401304A/duck/Korea/DY104/2007 (A/H4N6) segment 5 (NP)2534.70.000000e+001455/1497 (97%)EPI377635A/northern shoveler/Georgia/1/2010 (A/H2N3) segment 5 (NP)2529.20.000000e+001454/1497 (97%)EPI618640A/mallard/Sweden/366/2002 (A/H11N9) segment 5 (NP)2495.90.000000e+001448/1497 (96%)EPI485610A/mallard/Sweden/16/2002 (A/H12N9) segment 5 (NP)2495.90.000000e+001448/1497 (96%)EPI377769A/mallard/Sweden/30/2002 (A/H2N5) segment 5 (NP)2495.90.000000e+001448/1497 (96%)EPI618626A/mallard/Sweden/343/2002 (A/H12N5) segment 5 (NP)2490.40.000000e+001447/1497 (96%)EPI372379A/teal/Egypt/13203-NAMRU3/2006 (A/H6N2) segment 5 (NP)2484.90.000000e+001446/1497 (96%)EPI485724A/mallard/Sweden/49/2002 (A/H5N9) segment 5 (NP)2479.30.000000e+001445/1497 (96%)EPI485648A/mallard/Sweden/21/2002 (A/H5N2) segment 5 (NP)2479.30.000000e+001445/1497 (96%)EPI462311A/environment/Bangladesh/1041/2009 (A/H9N2) segment 5 (NP)2479.30.000000e+001446/1498 (96%)EPI251727A/mallard/Sweden/48/2002 (A/H11N9) segment 5 (NP)2479.30.000000e+001445/1497 (96%)EPI228494A/Eurasian wigeon/Sweden/1/2004 (A/H6N2) segment 5 (NP)2479.30.000000e+001445/1497 (96%)EPI372300A/teal/Egypt/00835-NAMRU3/2004 (A/H7N7) segment 5 (NP)2468.20.000000e+001443/1497 (96%)EPI182052A/turnstone/Netherlands/1/2007 (A/H3N8) segment 5 (NP)2468.20.000000e+001443/1497 (96%)EPI514947A/mallard/Sweden/52405/2006 (A/H0) segment 5 (NP)2462.70.000000e+001442/1497 (96%)EPI513366A/mallard/Sweden/101900/2009 (A/H4N3) segment 5 (NP)2462.70.000000e+001442/1497 (96%)EPI392495A/wild bird/Korea/A330/09 (A/H7N7) segment 5 (NP)2457.20.000000e+001441/1497 (96%)EPI372521A/teal/Egypt/00677-NAMRU3/2004 (A/H1N1) segment 5 (NP)2457.20.000000e+001441/1497 (96%)EPI296587A/mute swan/Netherlands/1/2006 (A/H10N7) segment 5 (NP)2457.20.000000e+001441/1497 (96%)EPI296516A/mallard/Netherlands/65/2006 (A/H5N3) segment 5 (NP)2451.60.000000e+001440/1497 (96%)EPI182100A/mallard/Netherlands/71/2006 (A/H6N2) segment 5 (NP)2451.60.000000e+001440/1497 (96%)EPI392496A/wild bird/Korea/A331/09 (A/H7N7) segment 5 (NP)2449.80.000000e+001439/1496 (96%)EPI619208A/mallard/Sweden/4486/2004 (A/H8N4) segment 5 (NP)2446.10.000000e+001439/1497 (96%)EPI618304A/mallard/Sweden/68621/2007 (A/H11N9) segment 5 (NP)2446.10.000000e+001439/1497 (96%)EPI618290A/mallard/Sweden/69639/2007 (A/H11N9) segment 5 (NP)2446.10.000000e+001439/1497 (96%)EPI619013A/mallard/Sweden/4411/2004 (A/H10N4) segment 5 (NP)2440.50.000000e+001438/1497 (96%)EPI619001A/mallard/Sweden/4401/2004 (A/H10N4) segment 5 (NP)2440.50.000000e+001438/1497 (96%)EPI618896A/mallard/Sweden/51645/2006 (A/H10N4) segment 5 (NP)2440.50.000000e+001438/1497 (96%)EPI618882A/mallard/Sweden/51619/2006 (A/H10N4) segment 5 (NP)2440.50.000000e+001438/1497 (96%)EPI618867A/mallard/Sweden/51582/2006 (A/H10N4) segment 5 (NP)2440.50.000000e+001438/1497 (96%)EPI618858A/mallard/Sweden/51548/2006 (A/H10N4) segment 5 (NP)2440.50.000000e+001438/1497 (96%)EPI618490A/mallard/Sweden/101589/2009 (A/H11N9) segment 5 (NP)2440.50.000000e+001438/1497 (96%)EPI514288A/mallard/Sweden/52366/2006 (A/H4N6) segment 5 (NP)2440.50.000000e+001438/1497 (96%)EPI514164A/mallard/Sweden/58369/2006 (A/H4N6) segment 5 (NP)2440.50.000000e+001438/1497 (96%)EPI514147A/mallard/Sweden/58276/2006 (A/H0) segment 5 (NP)2440.50.000000e+001438/1497 (96%)EPI457902A/sparrow/Guangxi/GXs-1/2012 (A/H1N2) segment 5 (NP)2440.50.000000e+001438/1497 (96%)EPI105931A/mallard/Bavaria/3/2006 (A/H10N7) segment 5 (NP)2440.50.000000e+001438/1497 (96%)EPI309093A/spur-winged goose/Nigeria/226/2008 (A/H5N2) segment 5 (NP)2438.70.000000e+001422/1473 (96%)EPI618910A/mallard/Sweden/51726/2006 (A/H10N4) segment 5 (NP)2435.00.000000e+001437/1497 (95%)EPI584395A/duck/Hunan/S3137/2009 (A/H10N8) segment 5 (NP)2435.00.000000e+001437/1497 (95%)EPI457922A/duck/Guangxi/GXd-2/2012 (A/H1N2) segment 5 (NP)2435.00.000000e+001437/1497 (95%)EPI377587A/mallard/Sweden/58451/2006 (A/H2N2) segment 5 (NP)2435.00.000000e+001437/1497 (95%)EPI513238A/mallard/Sweden/104925/2009 (A/H4N6) segment 5 (NP)2423.90.000000e+001435/1497 (95%)EPI178496A/Duck/Italy/268302/2004 (A/H10N4) segment 5 (NP)2423.90.000000e+001435/1497 (95%)EPI125311A/mallard/Italy/299/05 (A/H7N7) segment 5 (NP)2423.90.000000e+001423/1479 (96%)EPI463220A/mallard/Sweden/100127/2009 (A/H12N5) segment 5 (NP)2422.10.000000e+001420/1475 (96%)EPI463219A/mallard/Sweden/100117/2009 (A/H12N5) segment 5 (NP)2422.10.000000e+001420/1475 (96%)EPI463217A/mallard/Sweden/100103/2009 (A/H12N5) segment 5 (NP)2422.10.000000e+001420/1475 (96%)EPI514172A/mallard/Sweden/58461/2006 (A/H0) segment 5 (NP)2418.40.000000e+001434/1497 (95%)EPI457955A/Muscovy duck/Guangxi/GXd-3/2012 (A/H1N2) segment 5 (NP)2418.40.000000e+001434/1497 (95%)EPI508124A/wild duck/Korea/CSM42-34/2011 (A/H7N9) segment 5 (NP)2416.50.000000e+001430/1491 (95%)EPI485715A/mallard/Sweden/64/2002 (A/H5N2) segment 5 (NP)2407.30.000000e+001432/1497 (95%)EPI378005A/mallard/Netherlands/29/2010 (A/H2N3) segment 5 (NP)2407.30.000000e+001432/1497 (95%)EPI377989A/mallard/Netherlands/58/2008 (A/H2N3) segment 5 (NP)2407.30.000000e+001432/1497 (95%)EPI354437A/chicken/Pakistan/NARC-16945/2010 (A/H3N1) segment 5 (NP)2407.30.000000e+001432/1497 (95%)EPI184017A/mute swan/Hungary/5973/2007 (A/H7N7) segment 5 (NP)2407.30.000000e+001422/1481 (96%)EPI461796A/environment/Hunan/S1798/2012 (A/H11N2) segment 5 (NP)2401.80.000000e+001431/1497 (95%)EPI377981A/mallard/Netherlands/37/2008 (A/H2N3) segment 5 (NP)2401.80.000000e+001431/1497 (95%)EPI485604A/mallard/Netherlands/12/2000 (A/H7N3) segment 5 (NP)2396.20.000000e+001430/1497 (95%)EPI89975A/mallard/Netherlands/12/00 (A/H7N3) segment 5 (NP)2396.20.000000e+001430/1497 (95%)EPI463296A/mallard/Sweden/99889/2009 (A/H11N2) segment 5 (NP)2394.40.000000e+001416/1476 (95%)EPI463283A/mallard/Sweden/99852/2009 (A/H11N2) segment 5 (NP)2394.40.000000e+001416/1476 (95%)EPI463279A/mallard/Sweden/99846/2009 (A/H11N2) segment 5 (NP)2394.40.000000e+001416/1476 (95%)EPI463274A/mallard/Sweden/99841/2009 (A/H6N2) segment 5 (NP)2394.40.000000e+001416/1476 (95%)EPI174848A/duck/Denmark/75-65472-P34/2003 (A/H3N8) segment 5 (NP)2390.70.000000e+001429/1497 (95%)EPI463306A/mallard/Sweden/99996/2009 (A/H1N1) segment 5 (NP)2388.80.000000e+001415/1476 (95%)EPI463268A/mallard/Sweden/99820/2009 (A/H11N2) segment 5 (NP)2388.80.000000e+001415/1476 (95%)EPI463259A/mallard/Sweden/104803/2009 (A/H1N1) segment 5 (NP)2388.80.000000e+001414/1475 (95%)EPI296571A/mallard/Netherlands/9/2005 (A/H7N7) segment 5 (NP)2385.10.000000e+001429/1498 (95%)EPI251670A/mallard/Netherlands/5/2001 (A/H3N6) segment 5 (NP)2379.60.000000e+001427/1497 (95%)EPI514898A/mallard/Sweden/1656/2002 (A/H4N6) segment 5 (NP)2374.10.000000e+001426/1497 (95%)EPI514891A/mallard/Sweden/1616/2002 (A/H4N6) segment 5 (NP)2374.10.000000e+001426/1497 (95%)EPI514884A/mallard/Sweden/1544/2002 (A/H4N6) segment 5 (NP)2374.10.000000e+001426/1497 (95%)EPI514825A/mallard/Sweden/1677/2002 (A/H4N6) segment 5 (NP)2374.10.000000e+001426/1497 (95%)EPI514818A/mallard/Sweden/1665/2002 (A/H4N6) segment 5 (NP)2374.10.000000e+001426/1497 (95%)EPI12170A/duck/Hong Kong/3461/99 (A/H6N1) segment 5 (NP)2374.10.000000e+001426/1497 (95%)EPI600975A/duck/Jiangxi/24570/2009 (A/H0) segment 5 (NP)2370.40.000000e+001390/1444 (96%)EPI377651A/mallard/Netherlands/13/2001 (A/H2N9) segment 5 (NP)2368.50.000000e+001425/1497 (95%)EPI272788A/tufted duck/PT/13771/2006 (A/H7N3) segment 5 (NP)2368.50.000000e+001425/1497 (95%)EPI251634A/mallard/Netherlands/1/2002 (A/H4N6) segment 5 (NP)2368.50.000000e+001425/1497 (95%)EPI12168A/duck/Hong Kong/3096/99 (A/H6N2) segment 5 (NP)2364.80.000000e+001424/1497 (95%)EPI118132A/mallard/Italy/37/2002 (A/H5N3) segment 5 (NP)2355.60.000000e+001408/1475 (95%)EPI514755A/mallard/Sweden/5640/2005 (A/H4N6) segment 5 (NP)2351.90.000000e+001422/1497 (94%)EPI243122A/mallard/Denmark/64650/03 (A/H5N7) segment 5 (NP)2351.90.000000e+001423/1498 (94%)EPI526122A/common goldeneye/Mongolia/1216/2010 (A/H1N1) segment 5 (NP)2344.50.000000e+001367/1416 (96%)EPI508123A/wild duck/Korea/CSM42-1/2011 (A/H7N9) segment 5 (NP)2335.30.000000e+001384/1444 (95%)EPI526121A/common goldeneye/Mongolia/1238/2010 (A/H1N1) segment 5 (NP)2329.70.000000e+001365/1417 (96%)EPI526105A/tufted duck/Mongolia/1409/2010 (A/H1N1) segment 5 (NP)2329.70.000000e+001361/1411 (96%)EPI514686A/mallard/Sweden/5724/2005 (A/H4N2) segment 5 (NP)2307.60.000000e+001415/1498 (94%)EPI235052A/chicken/Jilin/hj/2003 (A/H5N1) segment 5 (NP)2302.00.000000e+001413/1497 (94%)EPI296595A/Eurasian wigeon/Netherlands/4/2007 (A/H10N1) segment 5 (NP)2296.50.000000e+001414/1499 (94%)EPI88881A/mallard duck/AST/244/1982 (A/H14N6) segment 5 (NP)2296.50.000000e+001413/1498 (94%)EPI407982A/mallard/Astrakhan/263/1982 (A/H14N5) segment 5 (NP)2291.00.000000e+001412/1498 (94%)EPI240161A/mallard/Gurjev/263/1982 (A/H14N5) segment 5 (NP)2291.00.000000e+001412/1498 (94%)EPI240157A/mallard/Astrakhan/244/1982 (A/H0N6) segment 5 (NP)2291.00.000000e+001412/1498 (94%)EPI130275A/mallard/Astrakhan/263/1982 (A/H14N5) segment 5 (NP)2291.00.000000e+001412/1498 (94%)EPI88888A/mallard/Astrakhan/266/1982 (A/H14N5) segment 5 (NP)2291.00.000000e+001412/1498 (94%)EPI88873A/mallard duck/Astrakhan/263/1982 (A/H14N5) segment 5 (NP)2291.00.000000e+001412/1498 (94%) Link to comment Share on other sites More sharing options...
niman Posted July 17, 2015 Author Report Share Posted July 17, 2015 AlignSegment-IDNameScoreE-ValueIdentityEPI623942A/chicken/England/26352/2015 (A/H7N7) segment 8 (NS)1548.60.000000e+00838/838 (100%)EPI514948A/mallard/Sweden/52405/2006 (A/H0) segment 8 (NS)1498.80.000000e+00829/838 (98%)EPI514602A/mallard/Sweden/50108/2006 (A/H4N6) segment 8 (NS)1498.80.000000e+00829/838 (98%)EPI372498A/mallard/Ukraine/05842-NAMRU3/2006 (A/H3N8) segment 8 (NS)1498.80.000000e+00829/838 (98%)EPI367577A/mallard/Czech Republic/14333-1K/2011 (A/H3N8) segment 8 (NS)1498.80.000000e+00829/838 (98%)EPI513751A/mallard/Sweden/79978/2008 (A/H4N6) segment 8 (NS)1493.20.000000e+00828/838 (98%)EPI485625A/Eurasian wigeon/Netherlands/4/2000 (A/H6N2) segment 8 (NS)1487.70.000000e+00827/838 (98%)EPI475943A/great black-backed gull/Iceland/1110/2011 (A/H5N2) segment 8 (NS)1487.70.000000e+00827/838 (98%)EPI618642A/mallard/Sweden/366/2002 (A/H11N9) segment 8 (NS)1482.10.000000e+00826/838 (98%)EPI499903A/turkey/Italy/472/1999 (A/H7N1) segment 8 (NS)1482.10.000000e+00826/838 (98%)EPI485622A/mallard/Sweden/16/2002 (A/H12N9) segment 8 (NS)1482.10.000000e+00826/838 (98%)EPI464812A/turkey/Italy/472/1999 (A/H7N1) segment 8 (NS)1482.10.000000e+00826/838 (98%)EPI284361A/mallard/Czech Republic/15902-17K/2009 (A/H6N2) segment 8 (NS)1482.10.000000e+00826/838 (98%)EPI238668A/turkey/Italy/977/1999 (A/H7N1) segment 8 (NS)1482.10.000000e+00826/838 (98%)EPI89829A/turkey/Italy/3620/1999 (A/H7N1) segment 8 (NS)1482.10.000000e+00826/838 (98%)EPI69224A/turkey/Italy/1265/99 (A/H7N1) segment 8 (NS)1482.10.000000e+00826/838 (98%)EPI68189A/turkey/Italy/977/99 (A/H7N1) segment 8 (NS)1482.10.000000e+00826/838 (98%)EPI505522A/chicken/Italy/1081/1999 (A/H7N1) segment 8 (NS)1478.40.000000e+00825/838 (98%)EPI525965A/eurasian wigeon/Mongolia/340V/2009 (A/H4N6) segment 8 (NS)1476.60.000000e+00825/838 (98%)EPI505571A/turkey/Italy/1555/1999 (A/H7N1) segment 8 (NS)1476.60.000000e+00825/838 (98%)EPI505542A/turkey/Italy/1085/1999 (A/H7N1) segment 8 (NS)1476.60.000000e+00825/838 (98%)EPI505529A/turkey/Italy/1083/1999 (A/H7N1) segment 8 (NS)1476.60.000000e+00825/838 (98%)EPI387548A/white-fronted goose/Mongolia/1-125/2008 (A/H3N8) segment 8 (NS)1476.60.000000e+00826/839 (98%)EPI327348A/turkey/Italy/1067/1999 (A/H7N1) segment 8 (NS)1476.60.000000e+00825/838 (98%)EPI306425A/shoveler/Koymor/118/2009 (A/H3) segment 8 (NS)1476.60.000000e+00825/838 (98%)EPI238411A/chicken/Italy/1067/1999 (A/H7N1) segment 8 (NS)1476.60.000000e+00825/838 (98%)EPI89841A/turkey/Italy/4169/99 (A/H7N1) segment 8 (NS)1476.60.000000e+00825/838 (98%)EPI63324A/chicken/Italy/1082/1999 (A/H7N1) segment 8 (NS)1476.60.000000e+00825/838 (98%)EPI505579A/turkey/Italy/2716/1999 (A/H7N1) segment 8 (NS)1472.90.000000e+00824/838 (98%)EPI617999A/garganey/Republic of Georgia/1/2011 (A/H4N2) segment 8 (NS)1471.10.000000e+00824/838 (98%)EPI438359A/chicken/Italy/1279/1999 (A/H7N1) segment 8 (NS)1471.10.000000e+00824/838 (98%)EPI327341A/chicken/Italy/1391/1999 (A/H7N1) segment 8 (NS)1471.10.000000e+00824/838 (98%)EPI251609A/common teal/Netherlands/9/2000 (A/H11N9) segment 8 (NS)1471.10.000000e+00824/838 (98%)EPI244104A/goose/Germany/R3160/09 (A/H5N2) segment 8 (NS)1471.10.000000e+00824/838 (98%)EPI238621A/turkey/Italy/2732/1999 (A/H7N1) segment 8 (NS)1471.10.000000e+00824/838 (98%)EPI238300A/turkey/Italy/2379/2000 (A/H7N1) segment 8 (NS)1471.10.000000e+00824/838 (98%)EPI235568A/Anas angustirostris/Astrakhan/3088/2002 (A/H4N8) segment 8 (NS)1471.10.000000e+00824/838 (98%)EPI69205A/turkey/Italy/2732/1999 (A/H7N1) segment 8 (NS)1471.10.000000e+00824/838 (98%)EPI69186A/turkey/Italy/2715/99 (A/H7N1) segment 8 (NS)1471.10.000000e+00824/838 (98%)EPI69148A/turkey/Italy/3489/99 (A/H7N1) segment 8 (NS)1471.10.000000e+00824/838 (98%)EPI68512A/turkey/Italy/3488/1999 (A/H7N1) segment 8 (NS)1471.10.000000e+00824/838 (98%)EPI68493A/turkey/Italy/3185/99 (A/H7N1) segment 8 (NS)1471.10.000000e+00824/838 (98%)EPI505543A/turkey/Italy/1086/1999 (A/H7N1) segment 8 (NS)1467.40.000000e+00823/838 (98%)EPI619108A/mallard/Sweden/99377/2009 (A/H8N4) segment 8 (NS)1465.50.000000e+00823/838 (98%)EPI619006A/mallard/Sweden/770/2002 (A/H10N6) segment 8 (NS)1465.50.000000e+00823/838 (98%)EPI618993A/mallard/Sweden/768/2002 (A/H10N6) segment 8 (NS)1465.50.000000e+00823/838 (98%)EPI618977A/mallard/Sweden/766/2002 (A/H0) segment 8 (NS)1465.50.000000e+00823/838 (98%)EPI618491A/mallard/Sweden/101589/2009 (A/H11N9) segment 8 (NS)1465.50.000000e+00823/838 (98%)EPI514847A/mallard/Sweden/1883/2003 (A/H4N3) segment 8 (NS)1465.50.000000e+00823/838 (98%)EPI507722A/turkey/Italy/4749/1999 (A/H7N1) segment 8 (NS)1465.50.000000e+00823/838 (98%)EPI485680A/mallard/Sweden/21/2002 (A/H5N2) segment 8 (NS)1465.50.000000e+00823/838 (98%)EPI485537A/mallard/Sweden/43/2002 (A/H10N5) segment 8 (NS)1465.50.000000e+00823/838 (98%)EPI433416A/mallard/Czech Republic/15962-4T/2010 (A/H6N9) segment 8 (NS)1465.50.000000e+00823/838 (98%)EPI433409A/mallard/Czech Republic/15902-25K/2009 (A/H11N9) segment 8 (NS)1465.50.000000e+00823/838 (98%)EPI433390A/mallard/Czech Republic/15902-18K/2009 (A/H6N9) segment 8 (NS)1465.50.000000e+00823/838 (98%)EPI367601A/mallard/Czech Republic/15962-1T/2010 (A/H6N9) segment 8 (NS)1465.50.000000e+00823/838 (98%)EPI314712A/mallard/Czech Republic/15902-18K/2009 (A/H11N9) segment 8 (NS)1465.50.000000e+00823/838 (98%)EPI309095A/spur-winged goose/Nigeria/210/2008 (A/H5N2) segment 8 (NS)1465.50.000000e+00823/838 (98%)EPI251709A/mallard/Sweden/41/2002 (A/H10N6) segment 8 (NS)1465.50.000000e+00823/838 (98%)EPI238637A/turkey/Italy/3675/1999 (A/H7N1) segment 8 (NS)1465.50.000000e+00823/838 (98%)EPI238629A/turkey/Italy/3283/1999 (A/H7N1) segment 8 (NS)1465.50.000000e+00823/838 (98%)EPI236182A/mallard/Sweden/21/2002 (A/H5N2) segment 8 (NS)1465.50.000000e+00823/838 (98%)EPI69129A/turkey/Italy/4301/1999 (A/H7N1) segment 8 (NS)1465.50.000000e+00823/838 (98%)EPI68474A/turkey/Italy/4295/1999 (A/H7N1) segment 8 (NS)1465.50.000000e+00823/838 (98%)EPI63305A/quail/Italy/396/2000 (A/H7N1) segment 8 (NS)1465.50.000000e+00823/838 (98%)EPI63267A/chicken/Italy/4746/1999 (A/H7N1) segment 8 (NS)1465.50.000000e+00823/838 (98%)EPI60414A/turkey/Italy/3675/99 (A/H7N1) segment 8 (NS)1465.50.000000e+00823/838 (98%)EPI619115A/mallard/Sweden/101165/2009 (A/H8N4) segment 8 (NS)1460.00.000000e+00823/839 (98%)EPI618604A/mallard/Sweden/50968/2006 (A/H12N5) segment 8 (NS)1460.00.000000e+00822/838 (98%)EPI514670A/mallard/Sweden/7582/2003 (A/H4N6) segment 8 (NS)1460.00.000000e+00822/838 (98%)EPI507730A/turkey/Italy/4756/1999 (A/H7N1) segment 8 (NS)1460.00.000000e+00822/838 (98%)EPI507714A/turkey/Italy/4827/1999 (A/H7N1) segment 8 (NS)1460.00.000000e+00822/838 (98%)EPI507698A/turkey/Italy/4618/1999 (A/H7N1) segment 8 (NS)1460.00.000000e+00822/838 (98%)EPI485840A/mallard/Netherlands/1/2001 (A/H6N1) segment 8 (NS)1460.00.000000e+00822/838 (98%)EPI377890A/mallard/Sweden/72/2005 (A/H2N9) segment 8 (NS)1460.00.000000e+00822/838 (98%)EPI372514A/garganey/Ukraine/05839-NAMRU3/2006 (A/H14N6) segment 8 (NS)1460.00.000000e+00822/838 (98%)EPI364119A/duck/Fujian/3264/2007 (A/H6N6) segment 8 (NS)1460.00.000000e+00823/839 (98%)EPI238660A/turkey/Italy/4580/1999 (A/H7N1) segment 8 (NS)1460.00.000000e+00822/838 (98%)EPI69110A/turkey/Italy/4617/1999 (A/H7N1) segment 8 (NS)1460.00.000000e+00822/838 (98%)EPI69072A/chicken/Italy/4789/1999 (A/H7N1) segment 8 (NS)1460.00.000000e+00822/838 (98%)EPI69053A/quail/Italy/4992/1999 (A/H7N1) segment 8 (NS)1460.00.000000e+00822/838 (98%)EPI68436A/turkey/Italy/4708/1999 (A/H7N1) segment 8 (NS)1460.00.000000e+00822/838 (98%)EPI68227A/turkey/Italy/1084/2000 (A/H7N1) segment 8 (NS)1460.00.000000e+00822/838 (98%)EPI60756A/duck/Italy/551/2000 (A/H7N1) segment 8 (NS)1460.00.000000e+00822/838 (98%)EPI60395A/turkey/Italy/4580/99 (A/H7N1) segment 8 (NS)1460.00.000000e+00822/838 (98%)EPI505690A/chicken/Italy/161/2000 (A/H7N1) segment 8 (NS)1456.30.000000e+00821/838 (97%)EPI505631A/turkey/Italy/5005/1999 (A/H7N1) segment 8 (NS)1456.30.000000e+00818/833 (98%)EPI118226A/mallard/Italy/36/2002 (A/H5N3) segment 8 (NS)1456.30.000000e+00816/830 (98%)EPI618655A/mallard/Sweden/418/2002 (A/H11N9) segment 8 (NS)1454.40.000000e+00821/838 (97%)EPI525913A/ruddy shelduck/Mongolia/590C2/2009 (A/H11N2) segment 8 (NS)1454.40.000000e+00821/838 (97%)EPI514687A/mallard/Sweden/5724/2005 (A/H4N2) segment 8 (NS)1454.40.000000e+00821/838 (97%)EPI514677A/mallard/Sweden/7925/2005 (A/H4N6) segment 8 (NS)1454.40.000000e+00821/838 (97%)EPI507706A/turkey/Italy/4828/1999 (A/H7N1) segment 8 (NS)1454.40.000000e+00821/838 (97%)EPI505919A/chicken/Italy/2021/2000 (A/H7N1) segment 8 (NS)1454.40.000000e+00821/838 (97%)EPI505806A/turkey/Italy/1009/2000 (A/H7N1) segment 8 (NS)1454.40.000000e+00821/838 (97%)EPI505774A/turkey/Italy/720/2000 (A/H7N1) segment 8 (NS)1454.40.000000e+00821/838 (97%)EPI505773A/chicken/Italy/662/2000 (A/H7N1) segment 8 (NS)1454.40.000000e+00821/838 (97%)EPI505677A/turkey/Italy/148/2000 (A/H7N1) segment 8 (NS)1454.40.000000e+00821/838 (97%)EPI505673A/chicken/Italy/18/2000 (A/H7N1) segment 8 (NS)1454.40.000000e+00821/838 (97%)EPI378006A/mallard/Netherlands/29/2010 (A/H2N3) segment 8 (NS)1454.40.000000e+00822/839 (97%) Link to comment Share on other sites More sharing options...
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