Partial Zika Sequence Israel ex-Colombia

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Israel MoH releases partial Zika sequence from Israel traveler infected in Colombia (Zika 2235 collected Dec 27 2015)

http://www.ncbi.nlm.nih.gov/nuccore/KU926326

 

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LOCUS       KU926326                 231 bp    RNA     linear   VRL 17-MAR-2016
DEFINITION  Zika virus isolate Zika 2235 Israel ex Colombia 2015 polyprotein
            gene, partial cds.
ACCESSION   KU926326
VERSION     KU926326.1  GI:1006592949
KEYWORDS    .
SOURCE      Zika virus
  ORGANISM  Zika virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Flaviviridae; Flavivirus.
REFERENCE   1  (bases 1 to 231)
  AUTHORS   Lustig,Y., Meltzer,E., Leshem,E., Koren,R., Levy,R., Hindiyeh,M.,
            Mendelson,E. and Schwartz,E.
  TITLE     Zika virus in Israeli travelers: Asia, Central and South America
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 231)
  AUTHORS   Lustig,Y., Meltzer,E., Leshem,E., Koren,R., Levy,R., Hindiyeh,M.,
            Mendelson,E. and Schwartz,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-MAR-2016) Central Virology Laboratory, Ministry of
            Health, Sheba Way, Ramat-Gan 5262100, Israel
COMMENT     ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..231
                     /organism="Zika virus"
                     /mol_type="genomic RNA"
                     /isolate="Zika 2235 Israel ex Colombia 2015"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:64320"
                     /country="Israel"
                     /collection_date="27-Dec-2015"

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Sequences producing significant alignments:

Select:AllNone Selected:0

AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments

Sequences producing significant alignments:

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
Select seq gb|KU922960.1|	Zika virus isolate MEX/InDRE/Sm/2016, complete genome	427	427	100%	4e-116	100%	KU922960.1
Select seq gb|KU922923.1|	Zika virus isolate MEX/InDRE/Lm/2016, complete genome	427	427	100%	4e-116	100%	KU922923.1
Select seq gb|KU820898.1|	Zika virus isolate GZ01 polyprotein gene, complete cds	427	427	100%	4e-116	100%	KU820898.1
Select seq gb|KU740184.2|	Zika virus isolate GD01 polyprotein gene, complete cds	427	427	100%	4e-116	100%	KU740184.2
Select seq gb|KU853013.1|	Zika virus isolate Dominican Republic/2016/PD2, complete genome	427	427	100%	4e-116	100%	KU853013.1
Select seq gb|KU853012.1|	Zika virus isolate Dominican Republic/2016/PD1, complete genome	427	427	100%	4e-116	100%	KU853012.1
Select seq gb|KU844090.1|	Zika virus isolate Moscow-2016 polyprotein gene, partial cds	427	427	100%	4e-116	100%	KU844090.1
Select seq gb|KU729218.1|	Zika virus isolate BeH828305 polyprotein gene, complete cds	427	427	100%	4e-116	100%	KU729218.1
Select seq gb|KU761564.1|	Zika virus isolate GDZ16001 polyprotein gene, complete cds	427	427	100%	4e-116	100%	KU761564.1
Select seq gb|KU527068.1|	Zika virus strain Natal RGN, complete genome	427	427	100%	4e-116	100%	KU527068.1
Select seq gb|KU646828.1|	Zika virus isolate Si322 polyprotein gene, partial cds	427	427	100%	4e-116	100%	KU646828.1
Select seq gb|KU647676.1|	Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds	427	427	100%	4e-116	100%	KU647676.1
Select seq gb|KU509998.1|	Zika virus strain Haiti/1225/2014, complete genome	427	427	100%	4e-116	100%	KU509998.1
Select seq gb|KU365778.1|	Zika virus strain BeH819015 polyprotein gene, complete cds	427	427	100%	4e-116	100%	KU365778.1
Select seq gb|KU312315.1|	Zika virus isolate Z1106027 polyprotein gene, partial cds	427	427	100%	4e-116	100%	KU312315.1
Select seq gb|KU312314.1|	Zika virus isolate Z1106031 polyprotein gene, partial cds	427	427	100%	4e-116	100%	KU312314.1
Select seq gb|KU312313.1|	Zika virus isolate Z1106032 polyprotein gene, partial cds	427	427	100%	4e-116	100%	KU312313.1
Select seq gb|KM212966.1|	Zika virus isolate NC13(FP)-26112013-22072 glycoprotein gene, partial cds	427	427	100%	4e-116	100%	KM212966.1
Select seq gb|KJ579441.1|	Zika virus isolate PF13-CP221013c polyprotein gene, partial cds	427	427	100%	4e-116	100%	KJ579441.1
Select seq dbj|AB908162.1|	Zika virus gene for polyprotein, partial cds, strain: ZIKV Hu/Tahiti/01u/2014NIID	427	427	100%	4e-116	100%	AB908162.1
Select seq gb|KU866423.1|	Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds	422	422	100%	2e-114	99%	KU866423.1
Select seq gb|KU820899.2|	Zika virus isolate ZJ03, complete genome	422	422	100%	2e-114	99%	KU820899.2
Select seq gb|KU820897.1|	Zika virus isolate FLR polyprotein gene, complete cds	422	422	100%	2e-114	99%	KU820897.1
Select seq gb|KU744693.1|	Zika virus isolate VE_Ganxian, complete genome	422	422	100%	2e-114	99%	KU744693.1
Select seq gb|KU497555.1|	Zika virus isolate Brazil-ZKV2015, complete genome	422	422	100%	2e-114	99%	KU497555.1
Select seq gb|KU707826.1|	Zika virus isolate SSABR1, complete genome	422	422	100%	2e-114	99%	KU707826.1
Select seq gb|KU646827.1|	Zika virus isolate Si323 polyprotein gene, partial cds	422	422	100%	2e-114	99%	KU646827.1
Select seq gb|KU501217.1|	Zika virus strain 8375 polyprotein gene, complete cds	422	422	100%	2e-114	99%	KU501217.1
Select seq gb|KU501216.1|	Zika virus strain 103344 polyprotein gene, complete cds	422	422	100%	2e-114	99%	KU501216.1
Select seq gb|KU501215.1|	Zika virus strain PRVABC59, complete genome	422	422	100%	2e-114	99%	KU501215.1
Select seq gb|KU365780.1|	Zika virus strain BeH815744 polyprotein gene, complete cds	422	422	100%	2e-114	99%	KU365780.1
Select seq gb|KU365779.1|	Zika virus strain BeH819966 polyprotein gene, complete cds	422	422	100%	2e-114	99%	KU365779.1
Select seq gb|KU365777.1|	Zika virus strain BeH818995 polyprotein gene, complete cds	422	422	100%	2e-114	99%	KU365777.1
Select seq gb|KU312312.1|	Zika virus isolate Z1106033 polyprotein gene, complete cds	422	422	100%	2e-114	99%	KU312312.1
Select seq gb|KU321639.1|	Zika virus strain ZikaSPH2015, complete genome	422	422	100%	2e-114	99%	KU321639.1
Select seq gb|KM212965.1|	Zika virus isolate NC13(FP)-20112013-22015 glycoprotein gene, partial cds	422	422	100%	2e-114	99%	KM212965.1
Select seq gb|KM212964.1|	Zika virus isolate NC14-17042014-4554 glycoprotein gene, partial cds	422	422	100%	2e-114	99%	KM212964.1
Select seq gb|KM212963.1|	Zika virus isolate NC14-23012014-250 glycoprotein gene, partial cds	422	422	100%	2e-114	99%	KM212963.1
Select seq gb|KF993678.1|	Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds	422	422	100%	2e-114	99%	KF993678.1
Select seq gb|KJ634273.1|	Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds	422	422	100%	2e-114	99%	KJ634273.1
Select seq gb|KJ776791.1|	Zika virus strain H/PF/2013 polyprotein gene, complete cds	422	422	100%	2e-114	99%	KJ776791.1
Select seq gb|KJ680134.1|	Zika virus strain PF13-091213-121 polyprotein gene, partial cds	422	422	100%	2e-114	99%	KJ680134.1
Select seq gb|KU681081.3|	Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome	416	416	100%	9e-113	99%	KU681081.3
Select seq gb|KU686218.1|	Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds	416	416	100%	9e-113	99%	KU686218.1
Select seq gb|JN860885.1|	Zika virus isolate FSS13025 polyprotein gene, partial cds	416	416	100%	9e-113	99%	JN860885.1
Select seq gb|KU729217.2|	Zika virus isolate BeH823339 polyprotein gene, complete cds	411	411	100%	4e-111	99%	KU729217.2
Select seq gb|KU681082.3|	Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome	411	411	100%	4e-111	99%	KU681082.3
Select seq gb|EU545988.1|	Zika virus polyprotein gene, complete cds	405	405	100%	2e-109	98%	EU545988.1
Select seq gb|KT381874.1|	Zika virus strain Zika1697_BR-RJ/2015 envelope protein gene, partial cds	401	401	97%	2e-108	99%	KT381874.1
Select seq gb|HQ234499.1|	Zika virus isolate P6-740 polyprotein gene, partial cds	355	355	100%	2e-94	94%	HQ234499.1

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Sequence map update

https://www.google.com/maps/d/u/0/edit?mid=zv94AJqgUct4.kI8kcFySb4J0&hl=en

 

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Zika virus polyprotein gene, partial cds.

PopSet: 1006592943

GenBank FASTA

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Study Details

Zika virus in Israeli travelers: Asia, Central and South America

Lustig,Y., Meltzer,E., Leshem,E., Koren,R., Levy,R., Hindiyeh,M., Mendelson,E. and Schwartz,E.

 

 

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Sequences in this data set

• KU926326.1Zika virus isolate Zika 2235 Israel ex Colombia 2015 polyprotein gene, partial cds
• KU926325.1Zika virus isolate Zika 356 Israel ex Mexico 2016 polyprotein gene, partial cds
• KU926324.1Zika virus isolate Zika 352 Israel ex Vietnam 2016 polyprotein gene, partial cds
• KU926323.1Zika virus isolate Zika 269 Israel ex Colombia 2016 polyprotein gene, partial cds