Partial Zika Sequence From Pregnant Colombia Case Co-Infected With Dengue & Chikinguya

[niman]

Universidad el Bosque has released a partial Zika sequence, 

ZIKCOLSC67, from Colombia pregnant case co-infected with Dengue and chikinguya (collection Feb 2016).

[niman]

LOCUS       KU954085                 240 bp ss-RNA     linear   VRL 23-MAR-2016
DEFINITION  Zika virus isolate ZIKCOLSC67 polyprotein gene, partial cds.
ACCESSION   KU954085
VERSION     KU954085.1  GI:1008913385
KEYWORDS    .
SOURCE      Zika virus
  ORGANISM  Zika virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Flaviviridae; Flavivirus.
REFERENCE   1  (bases 1 to 240)
  AUTHORS   Calvo,E.P. and Castellanos,J.E.
  TITLE     Dengue, chikungunya and Zika co-infection in a pregnant woman from
            Colombia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 240)
  AUTHORS   Calvo,E.P. and Castellanos,J.E.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAR-2016) Universidad el Bosque, Av. Cra 9 No. 131 A
            - 02 Edificio D, Bogota, Distrito Capital de Bogota 11001000,
            Colombia
COMMENT     ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..240
                     /organism="Zika virus"
                     /mol_type="genomic RNA"
                     /isolate="ZIKCOLSC67"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:64320"
                     /country="Colombia"
                     /collection_date="Feb-2016"
     CDS             <1..>240
                     /codon_start=2
                     /product="polyprotein"
                     /protein_id="AMR39829.1"
                     /db_xref="GI:1008913386"
                     /translation="MILLIALAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVM
                     AQDKPTVDIELVTTTVSNMAEVRSYCYEASISDMAR"
ORIGIN      
        1 catgatactg ctgattgccc tggcatacag catcaggtgc ataggagtca gcaataggga
       61 ctttgtggaa ggtatgtcag gtgggacttg ggttgatgtt gtcttggaac atggaggttg
      121 tgtcaccgta atggcacagg acaaaccgac tgtcgacata gagctggtta caacaacagt
      181 cagcaacatg gcggaggtaa gatcctactg ctatgaggca tcaatatcag acatggctcg

[niman]

Sequences producing significant alignments:

Select:AllNone Selected:0

AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments

Sequences producing significant alignments:

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
Select seq gb|KU954085.1|	Zika virus isolate ZIKCOLSC67 polyprotein gene, partial cds	434	434	100%	5e-118	100%	KU954085.1
Select seq gb|KU922923.1|	Zika virus isolate MEX/InDRE/Lm/2016, complete genome	430	430	99%	6e-117	100%	KU922923.1
Select seq gb|KU870645.1|	Zika virus isolate FB-GWUH-2016, complete genome	425	425	99%	3e-115	99%	KU870645.1
Select seq gb|KU926310.1|	Zika virus isolate Rio-S1, complete genome	425	425	99%	3e-115	99%	KU926310.1
Select seq gb|KU922960.1|	Zika virus isolate MEX/InDRE/Sm/2016, complete genome	425	425	99%	3e-115	99%	KU922960.1
Select seq gb|KU820898.1|	Zika virus isolate GZ01 polyprotein gene, complete cds	425	425	99%	3e-115	99%	KU820898.1
Select seq gb|KU740184.2|	Zika virus isolate GD01 polyprotein gene, complete cds	425	425	99%	3e-115	99%	KU740184.2
Select seq gb|KU853013.1|	Zika virus isolate Dominican Republic/2016/PD2, complete genome	425	425	99%	3e-115	99%	KU853013.1
Select seq gb|KU853012.1|	Zika virus isolate Dominican Republic/2016/PD1, complete genome	425	425	99%	3e-115	99%	KU853012.1
Select seq gb|KU729218.1|	Zika virus isolate BeH828305 polyprotein gene, complete cds	425	425	99%	3e-115	99%	KU729218.1
Select seq gb|KU761564.1|	Zika virus isolate GDZ16001 polyprotein gene, complete cds	425	425	99%	3e-115	99%	KU761564.1
Select seq gb|KU527068.1|	Zika virus strain Natal RGN, complete genome	425	425	99%	3e-115	99%	KU527068.1
Select seq gb|KU686218.1|	Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds	425	425	99%	3e-115	99%	KU686218.1
Select seq gb|KU647676.1|	Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds	425	425	99%	3e-115	99%	KU647676.1
Select seq gb|KU509998.1|	Zika virus strain Haiti/1225/2014, complete genome	425	425	99%	3e-115	99%	KU509998.1
Select seq gb|KU501215.1|	Zika virus strain PRVABC59, complete genome	425	425	99%	3e-115	99%	KU501215.1
Select seq gb|KU365778.1|	Zika virus strain BeH819015 polyprotein gene, complete cds	425	425	99%	3e-115	99%	KU365778.1
Select seq gb|KU312314.1|	Zika virus isolate Z1106031 polyprotein gene, partial cds	425	425	99%	3e-115	99%	KU312314.1
Select seq gb|KU312313.1|	Zika virus isolate Z1106032 polyprotein gene, partial cds	425	425	99%	3e-115	99%	KU312313.1
Select seq dbj|AB908162.1|	Zika virus gene for polyprotein, partial cds, strain: ZIKV Hu/Tahiti/01u/2014NIID	425	425	99%	3e-115	99%	AB908162.1
Select seq gb|KU955590.1|	Zika virus isolate Z16019 polyprotein gene, complete cds	421	421	99%	3e-114	99%	KU955590.1
Select seq gb|KU955589.1|	Zika virus isolate Z16006 polyprotein gene, complete cds	421	421	99%	3e-114	99%	KU955589.1
Select seq gb|KU926309.1|	Zika virus isolate Rio-U1, complete genome	421	421	99%	3e-114	99%	KU926309.1
Select seq gb|KU866423.1|	Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds	421	421	99%	3e-114	99%	KU866423.1
Select seq gb|KU820899.2|	Zika virus isolate ZJ03, complete genome	421	421	99%	3e-114	99%	KU820899.2
Select seq gb|KU820897.1|	Zika virus isolate FLR polyprotein gene, complete cds	421	421	99%	3e-114	99%	KU820897.1
Select seq gb|KU744693.1|	Zika virus isolate VE_Ganxian, complete genome	421	421	99%	3e-114	99%	KU744693.1
Select seq gb|KU497555.1|	Zika virus isolate Brazil-ZKV2015, complete genome	421	421	99%	3e-114	99%	KU497555.1
Select seq gb|KU707826.1|	Zika virus isolate SSABR1, complete genome	421	421	99%	3e-114	99%	KU707826.1
Select seq gb|KU501217.1|	Zika virus strain 8375 polyprotein gene, complete cds	421	421	99%	3e-114	99%	KU501217.1
Select seq gb|KU501216.1|	Zika virus strain 103344 polyprotein gene, complete cds	421	421	99%	3e-114	99%	KU501216.1
Select seq gb|KU365780.1|	Zika virus strain BeH815744 polyprotein gene, complete cds	421	421	99%	3e-114	99%	KU365780.1
Select seq gb|KU365779.1|	Zika virus strain BeH819966 polyprotein gene, complete cds	421	421	99%	3e-114	99%	KU365779.1
Select seq gb|KU365777.1|	Zika virus strain BeH818995 polyprotein gene, complete cds	421	421	99%	3e-114	99%	KU365777.1
Select seq gb|KU312312.1|	Zika virus isolate Z1106033 polyprotein gene, complete cds	421	421	99%	3e-114	99%	KU312312.1
Select seq gb|KU321639.1|	Zika virus strain ZikaSPH2015, complete genome	421	421	99%	3e-114	99%	KU321639.1
Select seq gb|KJ776791.1|	Zika virus strain H/PF/2013 polyprotein gene, complete cds	421	421	99%	3e-114	99%	KJ776791.1
Select seq gb|KU955593.1|	Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome	416	416	99%	1e-112	99%	KU955593.1
Select seq gb|KU681081.3|	Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome	416	416	99%	1e-112	99%	KU681081.3
Select seq gb|JN860885.1|	Zika virus isolate FSS13025 polyprotein gene, partial cds	416	416	99%	1e-112	99%	JN860885.1
Select seq gb|KU729217.2|	Zika virus isolate BeH823339 polyprotein gene, complete cds	412	412	99%	2e-111	98%	KU729217.2
Select seq gb|KU681082.3|	Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome	412	412	99%	2e-111	98%	KU681082.3
Select seq gb|KF993678.1|	Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds	412	412	99%	2e-111	98%	KF993678.1
Select seq gb|EU545988.1|	Zika virus polyprotein gene, complete cds	407	407	99%	7e-110	98%	EU545988.1
Select seq gb|KM212966.1|	Zika virus isolate NC13(FP)-26112013-22072 glycoprotein gene, partial cds	405	405	94%	2e-109	99%	KM212966.1
Select seq gb|KM212965.1|	Zika virus isolate NC13(FP)-20112013-22015 glycoprotein gene, partial cds	401	401	94%	3e-108	99%	KM212965.1
Select seq gb|KM212964.1|	Zika virus isolate NC14-17042014-4554 glycoprotein gene, partial cds	401	401	94%	3e-108	99%	KM212964.1
Select seq gb|KM212963.1|	Zika virus isolate NC14-23012014-250 glycoprotein gene, partial cds	401	401	94%	3e-108	99%	KM212963.1
Select seq gb|KU844090.1|	Zika virus isolate Moscow-2016 polyprotein gene, partial cds	392	392	91%	1e-105	99%	KU844090.1
Select seq gb|KU312315.1|	Zika virus isolate Z1106027 polyprotein gene, partial cds	392	392	91%	1e-105	99%	KU312315.1
Select seq gb|KJ579441.1|	Zika virus isolate PF13-CP221013c polyprotein gene, partial cds	392	392	91%	1e-105	99%	KJ579441.1
Select seq gb|KJ680134.1|	Zika virus strain PF13-091213-121 polyprotein gene, partial cds	389	389	91%	2e-104	99%	KJ680134.1
Select seq gb|KU926326.1|	Zika virus isolate Zika 2235 Israel ex Colombia 2015 polyprotein gene, partial cds	374	374	86%	4e-100	100%	KU926326.1
Select seq gb|KU926325.1|	Zika virus isolate Zika 356 Israel ex Mexico 2016 polyprotein gene, partial cds	374	374	86%	4e-100	100%	KU926325.1
Select seq gb|KU926324.1|	Zika virus isolate Zika 352 Israel ex Vietnam 2016 polyprotein gene, partial cds	374	374	86%	4e-100	100%	KU926324.1
Select seq gb|KU926323.1|	Zika virus isolate Zika 269 Israel ex Colombia 2016 polyprotein gene, partial cds	374	374	86%	4e-100	100%	KU926323.1
Select seq gb|KU646828.1|	Zika virus isolate Si322 polyprotein gene, partial cds	374	374	86%	4e-100	100%	KU646828.1
Select seq gb|KU646827.1|	Zika virus isolate Si323 polyprotein gene, partial cds	369	369	86%	2e-98	99%	KU646827.1
Select seq gb|KJ634273.1|	Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds	369	369	86%	2e-98	99%	KJ634273.1
Select seq gb|HQ234499.1|	Zika virus isolate P6-740 polyprotein gene, partial cds	358	358	99%	3e-95	93%	HQ234499.1
Select seq gb|KT381874.1|	Zika virus strain Zika1697_BR-RJ/2015 envelope protein gene, partial cds	351	351	84%	5e-93	99%	KT381874.1

[niman]

Zika sequence map update

https://www.google.com/maps/d/u/0/edit?mid=zv94AJqgUct4.kI8kcFySb4J0&hl=en