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niman

Full H5N8 Sequences Chickens Sweden

3 posts in this topic

National Veterinary Institute in Sweden has released a full H5N8 sequence (at GISAID) from chicken farm in Morap.

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pencil_noedit.png
A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016
EPI_ISL_238896
H5N8
Clinical Sample
2280
2297
2190
1704
1463
1413
982
835
---
---
2016-11-21
pencil_noedit.png
A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016
EPI_ISL_238895
H5N8
Clinical sample
2280
2297
2190
1704
1463
1413
982
835
---
---
2016-11-21
pencil_noedit.png
A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016
EPI_ISL_238894
H5N8
Clinocal Sample
2280
2297
2190
1704
1463
1413
982
835
---
---
2016-11-21
pencil_noedit.png
A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016
EPI_ISL_238893
H5N8
Clinical sample
2280
2297
2190
1704
1463
1413
982
835
---
---
2016-11-21

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Isolate detail
Isolate name:
 
A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 
 
 
Isolate ID:
 
EPI_ISL_238896 
 
 
Passage details/history:
 
Clinical Sample 
 
 
Type:
 
A / H5N8 
 
 
Lineage:
 
 
Sample information

 

Collection date:
 
2016-11-21 
 
 
Host
 
Gallus gallus 
 
 
Additional host information:
Domestic status:
 
Domestic 
 
 
Is vaccinated:
 
 
 
Location:
 
Sweden / Skane Lan / Helsingborgs Kommun 
 
 
Additional location information:
 
City of Mörarp, Lat. 56.053495 Long. 12.848939 
 
 
Health status:
 
Sick 
 
 
Specimen source:
 
Organ 
 
 
Strain or commercial product name used for vaccination:
 
 
 
 
Institute information

 

Originating lab:
 
National Veterinary Institute
 
Sample ID given by the sample provider:
 
 
 
 
Address:
 
National Veterinary Institute
Ulls v 2B S-75189 
75 189 Uppsala
Sweden
 
Submitting lab:
 
National Veterinary Institute
 
Sample ID given by the submitting laboratory:
 
 
 
 
Authors:
 

 
 
Address:
 
National Veterinary Institute
Ulls v 2B S-75189 
75 189 Uppsala
Sweden
 
Publication
Publication
 
In vivo antiviral resistance

 

Antiviral resistance tested by experimental procedures
 
Adamantanes:
 
Unknown 
 
 
Oseltamivir:
 
Unknown 
 
 
Zanamivir:
 
Unknown 
 
 
Peramivir:
 
Unknown 
 
 
Other:
 
Unknown 
 
 
Additional information
Antigenic characterization:
 
 
 
 
Note:
 

 
 
 
Sequence

 

segment identifier length accession # INSDC Sequence
 
PB2
 
A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016
 
2280
 
EPI863854
 
 
 
 
PB1
 
A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016
 
2297
 
EPI863855
 
 
 
 
PA
 
A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016
 
2190
 
EPI863856
 
 
 
 
HA
 
A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016
 
1704
 
EPI863857
 
 
 
 
NP
 
A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016
 
1463
 
EPI863858
 
 
 
 
NA
 
A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016
 
1413
 
EPI863859
 
 
 
 
MP
 
A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016
 
982
 
EPI863860
 
 
 
 
NS
 
A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016
 
835
 
EPI863861
 
 
 
Submitter information

 

Submitter:
 
Zohari, Siamak  
 
 
Submission Date:
 
2016-11-29 
 
 
Last modifier:
 
Zohari, Siamak  
 
 
Last modified:
 
2016-11-29 
 
 
Address:
 
National Veterinary Institute
Ulls v 2B S-75189 
75 189 Uppsala
Sweden

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