niman Posted November 30, 2016 Report Share Posted November 30, 2016 National Veterinary Institute in Sweden has released a full H5N8 sequence (at GISAID) from chicken farm in Morap. Link to comment Share on other sites More sharing options...
niman Posted November 30, 2016 Author Report Share Posted November 30, 2016 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 EPI_ISL_238896 H5N8 Clinical Sample 2280 2297 2190 1704 1463 1413 982 835 --- --- 2016-11-21 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 EPI_ISL_238895 H5N8 Clinical sample 2280 2297 2190 1704 1463 1413 982 835 --- --- 2016-11-21 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 EPI_ISL_238894 H5N8 Clinocal Sample 2280 2297 2190 1704 1463 1413 982 835 --- --- 2016-11-21 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 EPI_ISL_238893 H5N8 Clinical sample 2280 2297 2190 1704 1463 1413 982 835 --- --- 2016-11-21 Link to comment Share on other sites More sharing options...
niman Posted November 30, 2016 Author Report Share Posted November 30, 2016 Isolate detail Isolate name: A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 Isolate ID: EPI_ISL_238896 Passage details/history: Clinical Sample Type: A / H5N8 Lineage: Sample information Collection date: 2016-11-21 Host Gallus gallus Additional host information: http://www.oie.int/wahis_2/public/wahid.php/Reviewreport/Review?page_refer=MapFullEventReport&reportid=21663 Domestic status: Domestic Is vaccinated: N Location: Sweden / Skane Lan / Helsingborgs Kommun Additional location information: City of Mörarp, Lat. 56.053495 Long. 12.848939 Health status: Sick Specimen source: Organ Strain or commercial product name used for vaccination: Institute information Originating lab: National Veterinary Institute Sample ID given by the sample provider: Address: National Veterinary Institute Ulls v 2B S-75189 75 189 Uppsala Sweden Submitting lab: National Veterinary Institute Sample ID given by the submitting laboratory: Authors: Address: National Veterinary Institute Ulls v 2B S-75189 75 189 Uppsala Sweden Publication Publication In vivo antiviral resistance Phenotype Genotype Unspecified Antiviral resistance tested by experimental procedures Adamantanes: Unknown Oseltamivir: Unknown Zanamivir: Unknown Peramivir: Unknown Other: Unknown Additional information Antigenic characterization: Note: Sequence segment identifier length accession # INSDC Sequence PB2 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 2280 EPI863854 PB1 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 2297 EPI863855 PA A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 2190 EPI863856 HA A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 1704 EPI863857 NP A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 1463 EPI863858 NA A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 1413 EPI863859 MP A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 982 EPI863860 NS A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 835 EPI863861 Submitter information Submitter: Zohari, Siamak Submission Date: 2016-11-29 Last modifier: Zohari, Siamak Last modified: 2016-11-29 Address: National Veterinary Institute Ulls v 2B S-75189 75 189 Uppsala Sweden Link to comment Share on other sites More sharing options...
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