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niman

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Everything posted by niman

  1. niman
    map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=42.260548721839825%2C-75.16413958041062&z=10
  2. niman
    USA/NY-CDC-QDX85770981/2023 New York 9/29/23 collection 42F https://www.ncbi.nlm.nih.gov/biosample/37776496
  3. niman
    isolate SARS-CoV-2/Human/USA/NY-CDC-QDX85528244/2023 collected by Quest Diagnostics Incorporated collection date 2023-09-23 isolation source Nasal Swabs geographic location USA: New York host Homo sapiens host disease COVID-19 host sex male host age 17 collection device Nasal Swabs collection method Nasal Swabs purpose of sequencing baseline surveillance (random sampling) host_race Unknown diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.2.86 Submission CDC-OAMD; 2023-10-07 Accession: SAMN37713306 ID: 37713306
  4. niman
    map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=41.787457313275354%2C-75.16001970736374&z=9
  5. niman
    USA/NY-CDC-QDX85528244/2023 New York 9/23/23 collection 17M https://www.ncbi.nlm.nih.gov/biosample/37713306
  6. niman
    map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=45.21114476757108%2C-94.01927264218749&z=8
  7. niman
    USA/MN-CDC-VSX-A09453/2023 Minnesota 9/21/23 collection 68M Spike ins16MPLF, V483del NSP3 K1155R BA.2.86.1 T3565C (NSP3) NSP4 D217G
  8. niman
    isolate SARS-CoV-2/Human/USA/MN-CDC-VSX-A09453/2023 collected by Helix collection date 2023-09-21 isolation source swab geographic location USA: Minnesota host Homo sapiens host disease COVID-19 host sex male host age 68 collection device Swab collection method Swab purpose of sequencing baseline surveillance (random sampling) host_race White diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.2.86 https://www.ncbi.nlm.nih.gov/biosample/37721361
  9. niman
    isolate SARS-CoV-2/Human/USA/NY-CDC-QDX84402938/2023 collected by Quest Diagnostics Incorporated collection date 2023-08-25 isolation source Nasal Swabs geographic location USA: New York host Homo sapiens host disease COVID-19 host sex male host age 33 collection device Nasal Swabs collection method Nasal Swabs purpose of sequencing baseline surveillance (random sampling) host_race Unknown diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20 lineage/clade name BA.2.86 BioProject PRJNA716985 Severe acute respiratory syndrome coronavirus 2 Retrieve all samples from this project Submission Centers for Disease Control and Prevention; 2023-09-14 Accession: SAMN37399509 ID: 37399509 SRA
  10. niman
    map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=42.27518721237919%2C-76.07180508007812&z=10
  11. niman
    USA/NY-CDC-QDX84402938/2023 New York 8/25/23 collection 33M https://www.ncbi.nlm.nih.gov/biosample/37399509
  12. niman
    isolate SARS-CoV-2/Human/USA/NY-CDC-QDX84402889/2023 collected by Quest Diagnostics Incorporated collection date 2023-08-24 isolation source Nasal Swabs geographic location USA: New York host Homo sapiens host disease COVID-19 host sex male host age 27 collection device Nasal Swabs collection method Nasal Swabs purpose of sequencing baseline surveillance (random sampling) host_race Unknown diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18 lineage/clade name BA.2.86 BioProject PRJNA716985 Severe acute respiratory syndrome coronavirus 2 Retrieve all samples from this project Submission Centers for Disease Control and Prevention; 2023-09-14 Accession: SAMN37399547 ID: 37399547 SRA
  13. niman
    map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=42.38178070610861%2C-76.58541591992187&z=10
  14. niman
    USA/NY-CDC-QDX84402889/2023 New York 8/24/23 collection 27M https://www.ncbi.nlm.nih.gov/biosample/37399547
  15. niman
    isolate SARS-CoV-2/Human/USA/IN-CDC-QDX84403122/2023 collected by Quest Diagnostics Incorporated collection date 2023-08-25 isolation source Nasal Swabs geographic location USA: Indiana host Homo sapiens host disease COVID-19 host sex male host age 82 collection device Nasal Swabs collection method Nasal Swabs purpose of sequencing baseline surveillance (random sampling) host_race Unknown diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17 lineage/clade name BA.2.86 BioProject PRJNA716985 Severe acute respiratory syndrome coronavirus 2 Retrieve all samples from this project Submission Centers for Disease Control and Prevention; 2023-09-14 Accession: SAMN37399815 ID: 37399815 SRA
  16. niman
    map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=39.89855905763443%2C-86.49371059765625&z=9
  17. niman
    USA/IN-CDC-QDX84403122/2023 Indiana 8/25/23 collection 80M https://www.ncbi.nlm.nih.gov/biosample/37399815
  18. niman
    map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=45.823000964564486%2C-93.62925802773437&z=8
  19. niman
    USA/MN-CDC-VSX-A09453/2023 Minnesota 9/21/23 collection Spike ins16MPLF, V483del NSP3 K1155R BA.2.86.1
  20. niman
    map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=40.576008877527784%2C-73.91360556191405&z=11
  21. niman
    USA/NY-CDC-QDX85405100/2023 New York 9/19/23 collection 50M Spike ins16MPLF, V483del NSP3 K1155R BA.2.86.1 NSP2 Y441C NSP14 S221A NSP14 N408K NSP15 V69M T26229C (ORF 3a) T27134C (M)
  22. niman
    isolate SARS-CoV-2/Human/USA/NY-CDC-QDX85405100/2023 collected by Quest Diagnostics Incorporated collection date 2023-09-19 isolation source Nasal Swabs geographic location USA: New York host Homo sapiens host disease COVID-19 host sex male host age 50 collection device Nasal Swabs collection method Nasal Swabs purpose of sequencing baseline surveillance (random sampling) host_race Unknown diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18 lineage/clade name BA.2.86 Submission CDC-OAMD; 2023-10-06 Accession: SAMN37701160 ID: 37701160 https://www.ncbi.nlm.nih.gov/biosample/37701160
  23. niman
    map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=41.146639245322206%2C-73.73919760292968&z=11
  24. niman
    USA/NY-CDC-QDX85345226/2023 New York 9/19/23 collection 62M Spike ins16MPLF, V483del NSP3 K1155R BA.2.86.1
  25. niman
    isolate SARS-CoV-2/Human/USA/NY-CDC-QDX85345226/2023 collected by Quest Diagnostics Incorporated collection date 2023-09-19 isolation source Nasal Swabs geographic location USA: New York host Homo sapiens host disease COVID-19 host sex male host age 62 collection device Nasal Swabs collection method Nasal Swabs purpose of sequencing baseline surveillance (random sampling) host_race Unknown diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18 lineage/clade name BA.2.86 Submission CDC-OAMD; 2023-10-06 Accession: SAMN37701363 ID: 37701363 https://www.ncbi.nlm.nih.gov/biosample/37701363
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