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Pandemic Potentials Blog

Sequences (COVID)

  1. First Slipper Sequence from England

    Started by niman,

    England/CLIMB-CM7YMUES/2023 England 12/29 collection NSP3 K1155R T3565C (NSP3) NSP6 R252K C18894T (NSP14) Spike L455S NS7b F19L JN.1 NSP3 T1465I G17334T NSP13 Spike F456L Spike V1104L

    • 1 reply
    • 1.1k views
    niman

  2. Third Slipper Sequence from Bengaluru Karnataka India

    Started by niman,

    India/KA-RFNB-20470/2023 Bengaluru Karnataka 12/23 collection Spike ins16MPLF, V483del NSP3 K1155R T3565C (NSP3) NSP6 R252K C18894T (NSP14) Spike L455S NS7b F19L JN.1 NSP3 T1465I G17334T NSP13 Spike F456L Spike V1104L

    • 1 reply
    • 417 views
    niman

  3. Second Slipper Sequence from Pune Maharashtra India

    Started by niman,

    India/MH_BJCOG_INSACOG_6208/2024 Pune Maharashtra 1/1/24 collection Spike ins16MPLX, V483del NSP3 K1155R T3565C (NSP3) NSP6 R252K C18894T (NSP14) Spike L455S NS7b F19L JN.1 NSP3 T1465I Spike F456L Spike V1104L

    • 1 reply
    • 384 views
    niman

  4. First Slipper Sequence from Ahmedabad Gujarat India

    Started by niman,

    India/GJ-INSACOG-GBRC13656/2023 Ahmedabad Gujarat 12/9/23 collection NSP3 K1155R T3565C (NSP3) NSP6 R252K C18894T (NSP14) Spike L455S dropped NS7b F19L JN.1 NSP3 T1465I G17334T NSP13 Spike F456L dropped Spike V1104L

    • 1 reply
    • 366 views
    niman

  5. First Slipper Sequence from Pune Maharashtra India

    Started by niman,

    India/MH_BJCOG_INSACOG_6141/2023 Sassoon General Hospital Pune Maharashtra 12/25/23 collection Spike ins16MPLF, V483del NSP3 K1155R T3565C (NSP3) NSP6 R252K C18894T (NSP14) Spike L455S NS7b F19L JN.1 NSP3 T1465I G17334T NSP13 Spike F456L Spike V1104L

    • 1 reply
    • 378 views
    niman

  6. Second Slipper Sequence from Bengaluru Karnataka India

    Started by niman,

    India/KA-RFNB-20370/2023 Bengaluru Karnataka 12/23 collection NSP3 K1155R T3565C (NSP3) NSP6 R252K C18894T (NSP14) Spike L455S NS7b F19L JN.1 NSP3 T1465I G17334T NSP13 Spike F456L Spike V1104L

    • 1 reply
    • 280 views
    niman

  7. First Slipper Sequence from Bengaluru Karnataka India

    Started by niman,

    India/KA-RFNB-20224/2023 Victoria Hospital Bengaluru Karnataka 12/23 collection Spike ins17P, V483del NSP3 K1155R T3565C (NSP3) NSP6 R252K C18894T (NSP14) Spike L455S NS7b F19L JN.1 NSP3 T1465I G17334T NSP13 Spike F456L Spike V1104L

    • 1 reply
    • 256 views
    niman

  8. First Slipper Sequence from Bron France

    Started by niman,

    France/ARA-HCL023194081201/2023 Bron 12/9/23 collection Spike ins16MPLF, V483del NSP3 K1155R T3565C (NSP3) NSP6 R252K C11747T (NSP6) C18894T (NSP14) Spike L455S NS7b F19L JN.1 NSP2 F319L T3488C (NSP3) NSP3 I335T Spike G181E Spike F456L

    • 1 reply
    • 214 views
    niman

  9. First Slipper Sequence from Melesse France

    Started by niman,

    France/BRE-IPP30380/2023 Melesse 12/4/23 collection Spike ins16MPLF, V483del NSP3 K1155R T3565C (NSP3) NSP6 R252K C11747T (NSP6) C18894T (NSP14) Spike L455S NS7b F19L JN.1 NSP2 F319L T3488C (NSP3) NSP3 I335T Spike G181E Spike F456L

    • 1 reply
    • 183 views
    niman

  10. Second Slipper Sequence from St Denis France

    Started by niman,

    France/IDF-IPP30294/2023 Saint Denis 12/4/23 collection Spike ins16MPLF, V483del NSP3 K1155R T3565C (NSP3) NSP6 R252K C11747T (NSP6) C18894T (NSP14) Spike L455S NS7b F19L JN.1 NSP2 F319L T3488C (NSP3) NSP3 I335T Spike G181E Spike F456L

    • 1 reply
    • 220 views
    niman

  11. Seventh Slipper Sequence from Wales

    Started by niman,

    Wales/CLIMB-CM7Y8YP6/2023 Wales 12/12/23 collection Spike ins16XXXX, V483del NSP3 K1155R T3565C (NSP3) NSP6 R252K C18894T (NSP14) Spike L455S NS7b F19L JN.1 Spike F456L T26691C (M)

    • 1 reply
    • 152 views
    niman

  12. Sixth Slipper Sequence from Wales

    Started by niman,

    Wales/CLIMB-CM7YMYOJ/2023 Wales 12/11/23 collection Spike ins16XXXX, V483del NSP3 K1155R T3565C (NSP3) NSP6 R252K C18894T (NSP14) Spike L455S NS7b F19L JN.1 Spike F456L T26691C (M)

    • 1 reply
    • 157 views
    niman

  13. Fifth Slipper Sequence from Wales

    Started by niman,

    Wales/CLIMB-CM7YFDX7/2023 Wales 12/11/23 collection Spike ins16MPLF, V483del NSP3 K1155R T3565C (NSP3) NSP6 R252K C18894T (NSP14) Spike L455S NS7b F19L JN.1 Spike F456L T26691C (M)

    • 1 reply
    • 160 views
    niman

  14. Fourth Slipper Sequence from Wales

    Started by niman,

    Wales/CLIMB-CM7YJPRH/2023 Wales 12/11/23 collection Spike ins16XXXX, V483del NSP3 K1155R T3565C (NSP3) NSP6 R252K C18894T (NSP14) Spike L455S NS7b F19L JN.1 Spike F456L T26691C (M)

    • 1 reply
    • 145 views
    niman

  15. Third Slipper Sequence from Wales

    Started by niman,

    Wales/CLIMB-CM7YFUIZ/2023 Wales 12/5/23 collection Spike ins16XXXX, V483del NSP3 K1155R T3565C (NSP3) NSP6 R252K C18894T (NSP14) Spike L455S NS7b F19L JN.1 Spike F456L T26691C (M)

    • 1 reply
    • 295 views
    niman

  16. Second Slipper Sequence from Wales

    Started by niman,

    Wales/CLIMB-CM7YJTHX/2023 Wales 12/3/23 collection Spike ins16XXXX, V483del NSP3 K1155R NSP6 R252K C18894T (NSP14) Spike L455S NS7b F19L JN.1 Spike F456L T26691C (M)

    • 1 reply
    • 161 views
    niman

  17. First Slipper Sequence from Wales

    Started by niman,

    Wales/CLIMB-CM7YRW9M/2023 Wales 11/29/23 collection Spike ins16XXXX, V483del NSP3 K1155R T3565C (NSP3) NSP6 R252K C18894T (NSP14) Spike L455S NS7b F19L JN.1 Spike F456L T26691C (M)

    • 1 reply
    • 152 views
    niman

  18. First Slipper Sequence from Varmland Sweden

    Started by niman,

    Sweden/S-1260889502R4/2023 Varmland 11/26/23 collection Spike ins16MPLF, V483del NSP3 K1155R T3565C (NSP3) NSP6 R252K C18894T (NSP14) Spike L455S NS7b F19L JN.1 NSP1 T170I T18453C (NSP14) NS8 S103L Spike F456L

    • 1 reply
    • 272 views
    niman

  19. First Slipper Sequence from Saint Denis France

    Started by niman,

    France/IDF-IPP28960/2023 Saint Denis 11/27/23 collection Spike ins16MPLF, V483del NSP3 K1155R T3565C (NSP3) NSP6 R252K C11747T (NSP6) C18894T (NSP14) Spike L455S NS7b F19L JN.1 NSP2 F319L T3488C (NSP3) NSP3 I335T Spike G181E Spike F456L

    • 1 reply
    • 262 views
    niman

  20. First Slipper Sequence from Reims France

    Started by niman,

    France/GES-IPP28451/2023 Reims 11/20/23 collection Spike ins16MPLF, V483del NSP3 K1155R T3565C (NSP3) NSP6 R252K C11747T (NSP6) C18894T (NSP14) Spike L455S NS7b F19L JN.1 NSP2 F319L T3488C (NSP3) NSP3 I335T Spike G181E Spike F456L

    • 1 reply
    • 432 views
    niman

  21. First Slipper Sequence from Ichtegem Belgium

    Started by niman,

    Belgium/AZDelta-2347-16128/2023 Ichtegem 11/2/23 collection Spike ins16MPLF, V483del NSP3 K1155R T3565C (NSP3) NSP6 R252K C11747T (NSP6) C18894T (NSP14) Spike L455S NS7b F19L JN.1 NSP2 F319L T3488C (NSP3) NSP3 I335T Spike G181E Spike F456L

    • 1 reply
    • 178 views
    niman

  22. First Slipper Sequence from Strasbourg France

    Started by niman,

    France/GES-IPP28306/2023 Strasbourg 11/20/23 collection Spike ins16MPLF, V483del NSP3 K1155R T3565C (NSP3) NSP6 R252K C11747T (NSP6) C18894T (NSP14) Spike L455S NS7b F19L JN.1 NSP2 F319L T3488C (NSP3) NSP3 I335T Spike G181E Spike F456L

    • 1 reply
    • 161 views
    niman

  23. First JN.1 Sequence from Plessis-Trevise France

    Started by niman,

    France/IDF-IPP26725/2023 Plessis-Trevise 11/6/23 collection Spike ins16MPLF, V483del NSP3 K1155R T3565C (NSP3) NSP6 R252K C11747T (NSP6) C18894T (NSP14) Spike L455S NS7b F19L JN.1 NSP2 F319L Spike F456L

    • 3 replies
    • 281 views
    niman

  24. First XDD-like Sequence from Denmark

    Started by niman,

    Denmark/DCGC-665283/2023 Denmark 11/27/23 collection Spike ins16MPLF NSP1 K47R NSP3 N1708S REV C8293T (NSP3) REV NSP3 A1892T REV NSP4 L438F C18894T (NSP14) Spike L455S XDD-like

    • 1 reply
    • 436 views
    niman

  25. First XDD Sequence from Basel Switzerland

    Started by niman,

    Switzerland/BE-UHB-USB_2023_11_20_4e7a05e0/2023 Basel 10/31/23 collection Spike ins16MPLF, V483del NSP1 K47R NSP2 A510V NSP3 G1001S C6541T (NSP3) NSP6 R252K C18894T (NSP14) Spike L455S E T11A A27507C (NS7a) NS8 G8stop T28297C (N) N S413R C29625T (NS10) XDD (not at GISAID) https://www.ncbi.nlm.nih.gov/biosample/SAMEA114725249

    • 1 reply
    • 256 views
    niman

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