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Pandemic Potentials Blog

Sequences (COVID)

  1. Twenty Sixth JN.1 Sequence from New York USA

    Started by niman,

    USA/NY-CDC-QDX86945976/2023 New York 10/27/23 collection Spike ins16MPLF, V483del NSP3 K1155R T3565C (NSP3) NSP6 R252K C11747T (NSP6) C18894T (NSP14) Spike L455S NS7b F19L JN.1 NSP2 F319L C9142T (NSP4)

    • 1 reply
    • 99 views
    niman

  2. Twenty Fifth JN.1 Sequence from New York USA

    Started by niman,

    USA/NY-CDC-QDX86946205/2023 New York 10/26/23 collection Spike ins16MPLF, V483del NSP3 K1155R T3565C (NSP3) NSP6 R252K C18894T (NSP14) Spike L455S NS7b F19L JN.1 G17562T (NSP13)

    • 1 reply
    • 130 views
    niman

  3. Fourteenth JN.1 Sequence from New York USA

    Started by niman,

    USA/NY-CDC-QDX86946232/2023 New York 10/26/23 collection NSP3 K1155R T3565C (NSP3) NSP6 R252K C18894T (NSP14) Spike L455S NS7b F19L JN.1 G17562T (NSP13) (not at GISAID)

    • 3 replies
    • 146 views
    niman

  4. Twenty Fourth JN.1 Sequence from New York USA

    Started by niman,

    USA/NY-CDC-QDX86906283/2023 New York 10/25/23 collection Spike ins16MPLF, V483del NSP3 K1155R T3565C (NSP3) NSP6 R252K C18894T (NSP14) Spike L455S NS7b F19L JN.1

    • 1 reply
    • 111 views
    niman

  5. Twenty Third JN.1 Sequence from New York USA

    Started by niman,

    USA/NY-CDC-QDX86946123/2023 New York 10/24/23 collection Spike ins16MPLF, V483del NSP3 K1155R T3565C (NSP3) NSP6 R252K C11747T (NSP6) C18894T (NSP14) Spike L455S NS7b F19L JN.1 NSP2 F319L

    • 1 reply
    • 92 views
    niman

  6. Eleventh JN.1 Sequence from New York USA

    Started by niman,

    USA/NY-CDC-QDX86758230/2023 New York 10/23/23 collection NSP3 K1155R T3565C (NSP3) NSP6 R252K C18894T (NSP14) Spike L455S NS7b F19L JN.1 G17562T (NSP13) (not at GISAID)

    • 3 replies
    • 120 views
    niman

  7. Twelfth JN.1 Sequence from New York USA

    Started by niman,

    USA/NY-CDC-QDX86758222/2023 New York 10/23/23 collection NSP3 K1155R T3565C (NSP3) NSP6 R252K C18894T (NSP14) Spike L455S NS7b F19L JN.1 G17562T (NSP13) (not at GISAID)

    • 3 replies
    • 122 views
    niman

  8. First JN.1 Sequence from Arizona USA

    Started by niman,

    USA/AZ-CDC-QDX86906191/2023 Arizona 10/23/23 collection Spike ins16MPLF, V483del NSP3 K1155R T3565C (NSP3) NSP6 R252K C18894T (NSP14) Spike L455S NS7b F19L JN.1

    • 1 reply
    • 131 views
    niman

  9. Third JN.1 Sequence from Washington USA

    Started by niman,

    USA/WA-CDC-UW23102994176/2023 Washington 10/29/23 collection Spike ins16MPLF, V483del NSP3 K1155R T3565C (NSP3) NSP6 R252K C18894T (NSP14) Spike L455S NS7b F19L JN.1 G8578A (NSP4)

    • 1 reply
    • 124 views
    niman

  10. Twenty Second JN.1 Sequence from New York USA

    Started by niman,

    USA/NY-CDC-QDX86463850/2023 New York 10/16/23 collection Spike ins16MPLF, V483del NSP3 K1155R T3565C (NSP3) NSP6 R252K C18894T (NSP14) Spike L455S NS7b F19L JN.1

    • 1 reply
    • 116 views
    niman

  11. First JN.1 Sequence from Florida USA

    Started by niman,

    USA/FL-CDC-QDX86356525/2023 Florida 10/13/23 collection Spike ins16MPLF, V483del NSP3 K1155R T3565C (NSP3) NSP6 R252K C11747T (NSP6) C18894T (NSP14) Spike L455S NS7b F19L JN.1 NSP2 F319L

    • 1 reply
    • 133 views
    niman

  12. Sixth JN.1 Sequence from Virginia USA

    Started by niman,

    USA/VA-CDC-QDX86356273/2023 Virginia 10/11/23 collection Spike ins16MPLF, V483del NSP3 K1155R T3565C (NSP3) NSP6 R252K C11747T (NSP6) C18894T (NSP14) Spike L455S NS7b F19L JN.1 NSP2 F319L

    • 1 reply
    • 122 views
    niman

  13. Twenty First JN.1 Sequence from New York USA

    Started by niman,

    USA/NY-CDC-QDX86279436/2023 New York 10/10/23 collection Spike ins16MPLF, V483del NSP3 K1155R T3565C (NSP3) NSP6 R252K C11747T (NSP6) C18894T (NSP14) Spike L455S NS7b F19L JN.1 NSP2 F319L

    • 1 reply
    • 108 views
    niman

  14. Fifth JN.1 Sequence from Illinois USA

    Started by niman,

    USA/IL-CDC-QDX86168827/2023 Illinois 10/8/23 collection Spike ins16MPLF, V483del NSP3 K1155R T3565C (NSP3) NSP6 R252K C18894T (NSP14) Spike L455S NS7b F19L JN.1

    • 1 reply
    • 120 views
    niman

  15. First XDD Sequence from Saint Denis France

    Started by niman,

    France/IDF-IPP27330/2023 Saint Denis 11/13/23 collection Spike ins16MPLF, V483del NSP1 K47R C2334T (NSP2) G5720A (NSP3) C6541T (NSP3) NSP6 R252K C18894T (NSP14) Spike L455S E T11A A27507C (NS7a) NS8 G8stop T28297C (N) N S413R C29625T (NS10) XDD

    • 1 reply
    • 161 views
    niman

  16. First XDD Sequence from Ronchin France

    Started by niman,

    France/HDF-IPP27231/2023 Ronchin 11/13/23 collection Spike ins16MPLF, V483del NSP1 K47R C2334T (NSP2) G5720A (NSP3) C6541T (NSP3) NSP6 R252K C18894T (NSP14) Spike L455S E T11A A27507C (NS7a) NS8 G8stop T28297C (N) N S413R C29625T (NS10) XDD

    • 1 reply
    • 105 views
    niman

  17. First XDD Sequence from Geneva Switzerland

    Started by niman,

    Switzerland/GE-HUG-43107883/2023 Geneva 11/13/23 collection Spike V483del NSP1 K47R C2334T (NSP2) G5720A (NSP3) C6541T (NSP3) NSP6 R252K C18894T (NSP14) Spike L455S E T11A A27507C (NS7a) NS8 G8stop T28297C (N) N S413R C29625T (NS10) XDD

    • 1 reply
    • 201 views
    niman

  18. First XDD Sequence from Gelderland Netherlands

    Started by niman,

    Netherlands/GE-RIVM-133195/2023 Gelderland 11/4/23 collection Spike ins16MPLF, V483del NSP1 K47R C2334T (NSP2) G5720A (NSP3) C6541T (NSP3) NSP6 R252K C18894T (NSP14) Spike L455S E T11A A27507C (NS7a) NS8 G8stop T28297C (N) N S413R C29625T (NS10) XDD

    • 1 reply
    • 145 views
    niman

  19. First BA.2.86.1 XDD-like Recombinant from Berlin Germany

    Started by niman,

    Germany/BE-RKI-I-1139392/2023 Berlin 11/7/23 collection Spike ins16MPLF, V483del NSP3 K1155R E T11A A27507C (NS7a) NS8 G8stop T28297C (N) XDD-like

    • 1 reply
    • 220 views
    niman

  20. First XDD Sequence from Balearic Islands Spain

    Started by niman,

    Spain/IB-HUSE-09002/2023 Balearic Islands Hospital Universitario Son Espases 11/13/23 collection Spike ins16MPLF, V483del NSP1 K47R C2334T (NSP2) G5720A (NSP3) C6541T (NSP3) C18894T (NSP14) Spike L455S E T11A A27507C (NS7a) NS8 G8stop T28297C (N) C29625T (NS10) XDD

    • 1 reply
    • 156 views
    niman

  21. First XDD Sequence from Munich Germany

    Started by niman,

    Germany/BY-MVP-000022092/2023 Munich 10/26/23 collection Spike V483del NSP1 K47R C2334T (NSP2) G5720A (NSP3) C6541T (NSP3) NSP6 R252K C18894T (NSP14) Spike L455S E T11A A27507C (NS7a) G8stop(NS8) T28297C (N) C29625T (NS10) XDD

    • 1 reply
    • 157 views
    niman

  22. First XDD Sequence from Lugo Spain

    Started by niman,

    Spain/GA-HULA-600237/2023 Lugo 11/11/23 collection Spike ins16MPLF, V483del NSP1 K47R C2334T (NSP2) G5720A (NSP3) C6541T (NSP3) NSP6 R252K C18894T (NSP14) Spike L455S E T11A A27507C (NS7a) G8stop(NS8) T28297C (N) C29625T (NS10) XDD

    • 1 reply
    • 144 views
    niman

  23. Twentieth JN.1 Sequence from New York USA

    Started by niman,

    USA/NY-PRL-231103_83D05/2023 New York 11/5/23 collection NSP3 K1155R T3565C (NSP3) NSP6 R252K C18894T (NSP14) Spike L455S NS7b F19L JN.1 G17562T (NSP13) (not at GISAID)

    • 1 reply
    • 136 views
    niman

  24. Nineteenth JN.1 Sequence from New York USA

    Started by niman,

    USA/NY-PRL-231103_82G04/2023 New York 11/5/23 collection NSP3 K1155R T3565C (NSP3) NSP6 R252K C18894T (NSP14) Spike L455S NS7b F19L JN.1 G17562T (NSP13) (not at GISAID)

    • 1 reply
    • 122 views
    niman

  25. Seventeenth JN.1 Sequence from New York USA

    Started by niman,

    USA/NY-CDC-QDX87234490/2023 New York 11/2/23 collection NSP3 K1155R T3565C (NSP3) NSP6 R252K C18894T (NSP14) Spike L455S NS7b F19L JN.1 G17562T (NSP13)

    • 1 reply
    • 125 views
    niman

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