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Pandemic Potentials Blog

niman

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Everything posted by niman

  1. Align Segment-ID Name Score E-Value Identity EPI861486 A/Mandarin_duck/Korea/K16-187-3/2016 (A/H5N6) segment 6 (NA) 2436.9 0.000000e+00 1321/1321 (100%) EPI687157 A/great_egret/Hong_Kong/00032/2016 (A/H5N6) segment 6 (NA) 2387.0 0.000000e+00 1311/1321 (99%) EPI691380 A/ Guangdong /ZQ874/2015(H5N6) (A/H5N6) segment 6 (NA) 2364.8 0.000000e+00 1307/1321 (98%) EPI684564 A/Environment/Shenzhen/3/2015 (A/H5N6) segment 6 (NA) 2353.8 0.000000e+00 1305/1321 (98%) EPI687525 A/Chicken/Guangdong/FG594/2015(H5N6) (A/H5N6) segment 6 (NA) 2348.2 0.000000e+00 1304/1321 (98%) EPI837311 A/duck/Hubei/XG18/2015 (A/H5N6) segment 6 (NA) 2342.7 0.000000e+00 1303/1321 (98%) EPI837310 A/chicken/Hubei/XG18/2015 (A/H5N6) segment 6 (NA) 2342.7 0.000000e+00 1303/1321 (98%) EPI837309 A/duck/Hubei/WH18/2015 (A/H5N6) segment 6 (NA) 2342.7 0.000000e+00 1303/1321 (98%) EPI602486 A/chicken/Shenzhen/1061/2013 (A/H5N6) segment 6 (NA) 2309.4 0.000000e+00 1297/1321 (98%) EPI599335 A/silkie chicken/Dongguan/2809/2013 (A/H5N6) segment 6 (NA) 2281.7 0.000000e+00 1292/1321 (97%) EPI775293 A/duck/Guangzhou/021/2014 (A/H5N6) segment 6 (NA) 2276.2 0.000000e+00 1291/1321 (97%) EPI775285 A/duck/Guangzhou/018/2014 (A/H5N6) segment 6 (NA) 2276.2 0.000000e+00 1291/1321 (97%) EPI599329 A/duck/Dongguan/2685/2013 (A/H5N6) segment 6 (NA) 2276.2 0.000000e+00 1291/1321 (97%) EPI599301 A/chicken/Shenzhen/1395/2013 (A/H5N6) segment 6 (NA) 2276.2 0.000000e+00 1291/1321 (97%) EPI531458 A/duck/Guangdong/GD01/2014 (A/H5N6) segment 6 (NA) 2276.2 0.000000e+00 1291/1321 (97%) EPI602019 A/chicken/Shenzhen/2072/2013 (A/H0) segment 6 (NA) 2270.7 0.000000e+00 1290/1321 (97%) EPI599341 A/duck/Dongguan/3069/2013 (A/H5N6) segment 6 (NA) 2270.7 0.000000e+00 1290/1321 (97%) EPI530065 A/environment/Shenzhen/25-24/2013 (A/H5N6) segment 6 (NA) 2270.7 0.000000e+00 1290/1321 (97%) EPI602479 A/chicken/Shenzhen/715/2013 (A/H5N6) segment 6 (NA) 2265.1 0.000000e+00 1289/1321 (97%) EPI602414 A/chicken/Dongguan/2690/2013 (A/H5N6) segment 6 (NA) 2265.1 0.000000e+00 1289/1321 (97%) EPI599294 A/chicken/Shenzhen/552/2013 (A/H5N6) segment 6 (NA) 2265.1 0.000000e+00 1289/1321 (97%) EPI599287 A/chicken/Shenzhen/433/2013 (A/H5N6) segment 6 (NA) 2265.1 0.000000e+00 1289/1321 (97%) EPI530056 A/duck/Jiangxi/95/2014 (A/H5N6) segment 6 (NA) 2265.1 0.000000e+00 1289/1321 (97%) EPI839149 A/Gallinula chloropus/Guangdong/GZ174/2014 (A/H5N6) segment 6 (NA) 2259.6 0.000000e+00 1288/1321 (97%) EPI687500 A/Goose/ Guangdong /JG125/2013(H5N6) (A/H5N6) segment 6 (NA) 2259.6 0.000000e+00 1288/1321 (97%) EPI602493 A/chicken/Shenzhen/2269/2013 (A/H5N6) segment 6 (NA) 2259.6 0.000000e+00 1288/1321 (97%) EPI602421 A/chicken/Dongguan/3363/2013 (A/H5N6) segment 6 (NA) 2259.6 0.000000e+00 1289/1322 (97%) EPI602032 A/chicken/Dongguan/4190/2013 (A/H0) segment 6 (NA) 2259.6 0.000000e+00 1289/1322 (97%) EPI599322 A/chicken/Shenzhen/2464/2013 (A/H5N6) segment 6 (NA) 2259.6 0.000000e+00 1288/1321 (97%) EPI550765 A/duck/Laos/XBY004/2014 (A/H5N6) segment 6 (NA) 2259.6 0.000000e+00 1289/1322 (97%) EPI550754 A/chicken/Laos/LPQ001/2014 (A/H5N6) segment 6 (NA) 2259.6 0.000000e+00 1289/1322 (97%) EPI703641 A/goose/Eastern China/S0513/2013 (A/H5N6) segment 6 (NA) 2255.9 0.000000e+00 1290/1324 (97%) EPI736916 A/Changsha/1/2014 (A/H5N6) segment 6 (NA) 2254.0 0.000000e+00 1288/1322 (97%) EPI645044 A/swine/Guangdong/2/2014 (A/H5N6) segment 6 (NA) 2254.0 0.000000e+00 1288/1322 (97%) EPI645037 A/swine/Guangdong/1/2014 (A/H5N6) segment 6 (NA) 2254.0 0.000000e+00 1288/1322 (97%) EPI601944 A/chicken/Dongguan/1100/2014 (A/H0) segment 6 (NA) 2254.0 0.000000e+00 1287/1321 (97%) EPI599315 A/chicken/Shenzhen/2396/2013 (A/H5N6) segment 6 (NA) 2254.0 0.000000e+00 1287/1321 (97%) EPI596624 A/duck/Vietnam/LBM760/2014 (A/H5N6) segment 6 (NA) 2254.0 0.000000e+00 1287/1321 (97%) EPI596618 A/duck/Vietnam/LBM759/2014 (A/H5N6) segment 6 (NA) 2254.0 0.000000e+00 1287/1321 (97%) EPI596612 A/duck/Vietnam/LBM758/2014 (A/H5N6) segment 6 (NA) 2254.0 0.000000e+00 1287/1321 (97%) EPI596606 A/muscovy duck/Vietnam/LBM757/2014 (A/H5N6) segment 6 (NA) 2254.0 0.000000e+00 1287/1321 (97%) EPI596600 A/muscovy duck/Vietnam/LBM756/2014 (A/H5N6) segment 6 (NA) 2254.0 0.000000e+00 1287/1321 (97%) EPI596594 A/muscovy duck/Vietnam/LBM755/2014 (A/H5N6) segment 6 (NA) 2254.0 0.000000e+00 1287/1321 (97%) EPI596588 A/muscovy duck/Vietnam/LBM754/2014 (A/H5N6) segment 6 (NA) 2254.0 0.000000e+00 1287/1321 (97%) EPI596576 A/duck/Vietnam/LBM751/2014 (A/H5N6) segment 6 (NA) 2254.0 0.000000e+00 1287/1321 (97%) EPI596582 A/duck/Vietnam/LBM752/2014 (A/H5N6) segment 6 (NA) 2250.3 0.000000e+00 1286/1321 (97%) EPI681346 A/goose/Zhejiang/925036/2014 (A/H5N6) segment 6 (NA) 2248.5 0.000000e+00 1286/1321 (97%) EPI602319 A/chicken/Jiangxi/13205/2014 (A/H10N6) segment 6 (NA) 2248.5 0.000000e+00 1286/1321 (97%) EPI602312 A/chicken/Jiangxi/13201/2014 (A/H10N6) segment 6 (NA) 2248.5 0.000000e+00 1286/1321 (97%) EPI602305 A/chicken/Jiangxi/13199/2014 (A/H10N6) segment 6 (NA) 2248.5 0.000000e+00 1286/1321 (97%) EPI602298 A/chicken/Jiangxi/13197/2014 (A/H10N6) segment 6 (NA) 2248.5 0.000000e+00 1286/1321 (97%) EPI602274 A/chicken/Jiangxi/13238/2014 (A/H10N6) segment 6 (NA) 2248.5 0.000000e+00 1286/1321 (97%) EPI602267 A/chicken/Jiangxi/13235/2014 (A/H10N6) segment 6 (NA) 2248.5 0.000000e+00 1286/1321 (97%) EPI602260 A/chicken/Jiangxi/13231/2014 (A/H10N6) segment 6 (NA) 2248.5 0.000000e+00 1286/1321 (97%) EPI602253 A/chicken/Jiangxi/13221/2014 (A/H10N6) segment 6 (NA) 2248.5 0.000000e+00 1286/1321 (97%) EPI602236 A/chicken/Jiangxi/13264/2014 (A/H10N6) segment 6 (NA) 2248.5 0.000000e+00 1286/1321 (97%) EPI602229 A/chicken/Jiangxi/13258/2014 (A/H10N6) segment 6 (NA) 2248.5 0.000000e+00 1286/1321 (97%) EPI602222 A/chicken/Jiangxi/13251/2014 (A/H10N6) segment 6 (NA) 2248.5 0.000000e+00 1286/1321 (97%) EPI602208 A/chicken/Jiangxi/13247/2014 (A/H10N6) segment 6 (NA) 2248.5 0.000000e+00 1286/1321 (97%) EPI602201 A/chicken/Jiangxi/13241/2014 (A/H10N6) segment 6 (NA) 2248.5 0.000000e+00 1286/1321 (97%) EPI602155 A/chicken/Jiangxi/13266/2014 (A/H10N6) segment 6 (NA) 2248.5 0.000000e+00 1286/1321 (97%) EPI602048 A/chicken/Dongguan/2818/2013 (A/H0) segment 6 (NA) 2248.5 0.000000e+00 1286/1321 (97%) EPI601464 A/chicken/Jiangxi/13211/2014 (A/H0) segment 6 (NA) 2248.5 0.000000e+00 1286/1321 (97%) EPI601453 A/chicken/Jiangxi/13198/2014 (A/H0) segment 6 (NA) 2248.5 0.000000e+00 1286/1321 (97%) EPI601443 A/chicken/Jiangxi/13196/2014 (A/H0) segment 6 (NA) 2248.5 0.000000e+00 1286/1321 (97%) EPI601406 A/chicken/Jiangxi/13253/2014 (A/H0) segment 6 (NA) 2248.5 0.000000e+00 1286/1321 (97%) EPI601394 A/chicken/Jiangxi/13237/2014 (A/H0) segment 6 (NA) 2248.5 0.000000e+00 1286/1321 (97%) EPI601342 A/chicken/Jiangxi/13272/2014 (A/H0) segment 6 (NA) 2248.5 0.000000e+00 1286/1321 (97%) EPI601197 A/chicken/Jiangxi/13216/2014 (A/H0) segment 6 (NA) 2248.5 0.000000e+00 1286/1321 (97%) EPI601190 A/chicken/Jiangxi/13215/2014 (A/H0) segment 6 (NA) 2248.5 0.000000e+00 1286/1321 (97%) EPI601180 A/chicken/Jiangxi/13212/2014 (A/H0) segment 6 (NA) 2248.5 0.000000e+00 1286/1321 (97%) EPI601171 A/chicken/Jiangxi/13206/2014 (A/H0) segment 6 (NA) 2248.5 0.000000e+00 1286/1321 (97%) EPI601162 A/chicken/Jiangxi/13204/2014 (A/H0) segment 6 (NA) 2248.5 0.000000e+00 1286/1321 (97%) EPI601152 A/chicken/Jiangxi/13246/2014 (A/H0) segment 6 (NA) 2248.5 0.000000e+00 1286/1321 (97%) EPI601126 A/chicken/Jiangxi/13228/2014 (A/H0) segment 6 (NA) 2248.5 0.000000e+00 1286/1321 (97%) EPI601117 A/chicken/Jiangxi/13219/2014 (A/H0) segment 6 (NA) 2248.5 0.000000e+00 1286/1321 (97%) EPI601099 A/chicken/Jiangxi/13271/2014 (A/H0) segment 6 (NA) 2248.5 0.000000e+00 1286/1321 (97%) EPI601080 A/chicken/Jiangxi/13260/2014 (A/H0) segment 6 (NA) 2248.5 0.000000e+00 1286/1321 (97%) EPI600276 A/chicken/Jiangxi/13275/2014 (A/H10N6) segment 6 (NA) 2248.5 0.000000e+00 1286/1321 (97%) EPI600269 A/chicken/Jiangxi/13263/2014 (A/H10N6) segment 6 (NA) 2248.5 0.000000e+00 1286/1321 (97%) EPI600255 A/chicken/Jiangxi/13248/2014 (A/H10N6) segment 6 (NA) 2248.5 0.000000e+00 1286/1321 (97%) EPI600241 A/chicken/Jiangxi/13222/2014 (A/H10N6) segment 6 (NA) 2248.5 0.000000e+00 1286/1321 (97%) EPI600234 A/chicken/Jiangxi/13218/2014 (A/H10N6) segment 6 (NA) 2248.5 0.000000e+00 1286/1321 (97%) EPI600220 A/chicken/Jiangxi/13208/2014 (A/H10N6) segment 6 (NA) 2248.5 0.000000e+00 1286/1321 (97%) EPI600199 A/chicken/Jiangxi/12782/2014 (A/H10N6) segment 6 (NA) 2248.5 0.000000e+00 1286/1321 (97%) EPI599657 A/goose/Shantou/1791/2014 (A/H5N6) segment 6 (NA) 2248.5 0.000000e+00 1286/1321 (97%) EPI599348 A/chicken/Dongguan/4259/2013 (A/H5N6) segment 6 (NA) 2248.5 0.000000e+00 1286/1321 (97%) EPI593183 A/chicken/Jiangxi/14535/2014 (A/H7N6) segment 6 (NA) 2248.5 0.000000e+00 1286/1321 (97%) EPI593140 A/chicken/Jiangxi/14510/2014 (A/H0) segment 6 (NA) 2248.5 0.000000e+00 1286/1321 (97%) EPI593123 A/chicken/Jiangxi/14501/2014 (A/H7N6) segment 6 (NA) 2248.5 0.000000e+00 1286/1321 (97%) EPI839141 A/Copsychus saularis/Guangdong/SW8/2014 (A/H5N6) segment 6 (NA) 2243.0 0.000000e+00 1285/1321 (97%) EPI687541 A/Goose/ Guangdong /SSLBY/2015(H5N6) (A/H5N6) segment 6 (NA) 2243.0 0.000000e+00 1285/1321 (97%) EPI602246 A/chicken/Jiangxi/13217/2014 (A/H10N6) segment 6 (NA) 2243.0 0.000000e+00 1285/1321 (97%) EPI602239 A/chicken/Jiangxi/13213/2014 (A/H10N6) segment 6 (NA) 2243.0 0.000000e+00 1285/1321 (97%) EPI602215 A/chicken/Jiangxi/13249/2014 (A/H10N6) segment 6 (NA) 2243.0 0.000000e+00 1285/1321 (97%) EPI602194 A/chicken/Jiangxi/13240/2014 (A/H10N6) segment 6 (NA) 2243.0 0.000000e+00 1285/1321 (97%) EPI602162 A/chicken/Jiangxi/13274/2014 (A/H10N6) segment 6 (NA) 2243.0 0.000000e+00 1285/1321 (97%) EPI601474 A/chicken/Jiangxi/13232/2014 (A/H0) segment 6 (NA) 2243.0 0.000000e+00 1285/1321 (97%) EPI601242 A/chicken/Jiangxi/13203/2014 (A/H0) segment 6 (NA) 2243.0 0.000000e+00 1285/1321 (97%) EPI601145 A/chicken/Jiangxi/13244/2014 (A/H0) segment 6 (NA) 2243.0 0.000000e+00 1285/1321 (97%) EPI601135 A/chicken/Jiangxi/13233/2014 (A/H0) segment 6 (NA) 2243.0 0.000000e+00 1285/1321 (97%) EPI601088 A/chicken/Jiangxi/13262/2014 (A/H0) segment 6 (NA) 2243.0 0.000000e+00 1285/1321 (97%) EPI601070 A/chicken/Jiangxi/13259/2014 (A/H0) segment 6 (NA) 2243.0 0.000000e+00 1285/1321 (97%) EPI600248 A/chicken/Jiangxi/13242/2014 (A/H10N6) segment 6 (NA) 2243.0 0.000000e+00 1285/1321 (97%) EPI600227 A/chicken/Jiangxi/13214/2014 (A/H10N6) segment 6 (NA) 2243.0 0.000000e+00 1285/1321 (97%) EPI600213 A/chicken/Jiangxi/13202/2014 (A/H10N6) segment 6 (NA) 2243.0 0.000000e+00 1285/1321 (97%) EPI600192 A/chicken/Jiangxi/12272/2014 (A/H10N6) segment 6 (NA) 2243.0 0.000000e+00 1286/1322 (97%) EPI599650 A/goose/Shantou/1763/2014 (A/H5N6) segment 6 (NA) 2243.0 0.000000e+00 1285/1321 (97%) EPI592609 A/chicken/Jiangxi/13554/2014 (A/H0) segment 6 (NA) 2243.0 0.000000e+00 1285/1321 (97%) EPI590815 A/duck/Jiangxi/NCDZT1126/2014 (A/H5N6) segment 6 (NA) 2243.0 0.000000e+00 1286/1322 (97%) EPI590808 A/duck/Jiangxi/NCDZT1123/2014 (A/H5N6) segment 6 (NA) 2243.0 0.000000e+00 1286/1322 (97%) EPI768622 A/chicken/Wuxi/SC7393/2015(H5N6) (A/H5N6) segment 6 (NA) 2241.1 0.000000e+00 1286/1322 (97%) EPI646025 A/chicken/Jiangsu/WXSB2/2014 (A/H5N6) segment 6 (NA) 2241.1 0.000000e+00 1286/1322 (97%) EPI645983 A/chicken/Jiangsu/WXS7393/2014 (A/H5N6) segment 6 (NA) 2241.1 0.000000e+00 1286/1322 (97%) EPI691550 A/environment/Yunnan/YN25/2015 (A/H5N6) segment 6 (NA) 2237.4 0.000000e+00 1284/1321 (97%) EPI681348 A/goose/Zhejiang/925106/2014 (A/H5N6) segment 6 (NA) 2237.4 0.000000e+00 1284/1321 (97%) EPI641397 A/chicken/Yunnan/25A/2015 (A/H5N6) segment 6 (NA) 2237.4 0.000000e+00 1284/1321 (97%) EPI602190 A/chicken/Jiangxi/14512/2014 (A/H10N6) segment 6 (NA) 2237.4 0.000000e+00 1284/1321 (97%) EPI600262 A/chicken/Jiangxi/13256/2014 (A/H10N6) segment 6 (NA) 2237.4 0.000000e+00 1284/1321 (97%) EPI600206 A/chicken/Jiangxi/13200/2014 (A/H10N6) segment 6 (NA) 2237.4 0.000000e+00 1284/1321 (97%) EPI599664 A/goose/Shantou/1806/2014 (A/H5N6) segment 6 (NA) 2237.4 0.000000e+00 1284/1321 (97%) EPI691543 A/environment/Yunnan/YN22/2015 (A/H5N6) segment 6 (NA) 2231.9 0.000000e+00 1283/1321 (97%) EPI760223 A/duck/Hunan/7/2015 (A/H3N6) segment 6 (NA) 2226.3 0.000000e+00 1283/1322 (97%) EPI760207 A/duck/Hunan/146/2014 (A/H3N6) segment 6 (NA) 2226.3 0.000000e+00 1282/1321 (97%) EPI691537 A/environment/Yunnan/YN19/2015 (A/H5N6) segment 6 (NA) 2226.3 0.000000e+00 1282/1321 (97%) EPI687549 A/Goose/ Guangdong /SSZYP/2015(H5N6) (A/H5N6) segment 6 (NA) 2226.3 0.000000e+00 1282/1321 (97%) EPI683016 A/chicken/Wuhan/WHYJ02/2015 (A/H5N6) segment 6 (NA) 2226.3 0.000000e+00 1283/1322 (97%) EPI683015 A/chicken/Wuhan/WHYJ01/2015 (A/H5N6) segment 6 (NA) 2226.3 0.000000e+00 1283/1322 (97%) EPI615107 A/duck/Guangxi/175D12/2014 (A/H3N6) segment 6 (NA) 2226.3 0.000000e+00 1282/1321 (97%) EPI587573 A/Environment/Yunnan/DQ53/2015 (A/H5N6) segment 6 (NA) 2226.3 0.000000e+00 1282/1321 (97%) EPI587557 A/Environment/Yunnan/DQ16/2015 (A/H5N6) segment 6 (NA) 2226.3 0.000000e+00 1282/1321 (97%) EPI587549 A/Environment/Yunnan/DQ9/2015 (A/H5N6) segment 6 (NA) 2226.3 0.000000e+00 1282/1321 (97%) EPI703645 A/duck/Eastern China/S0908/2014 (A/H5N6) segment 6 (NA) 2222.6 0.000000e+00 1284/1324 (96%) EPI760215 A/duck/Hunan/161/2015 (A/H3N6) segment 6 (NA) 2220.8 0.000000e+00 1282/1322 (96%) EPI641400 A/Yunnan/0127/2015 (A/H5N6) segment 6 (NA) 2220.8 0.000000e+00 1281/1321 (96%) EPI601415 A/chicken/Jiangxi/13257/2014 (A/H0) segment 6 (NA) 2220.8 0.000000e+00 1282/1322 (96%) EPI587628 A/Yunnan/14564/2015 (A/H5N6) segment 6 (NA) 2220.8 0.000000e+00 1281/1321 (96%) EPI587620 A/Yunnan/14563/2015 (A/H5N6) segment 6 (NA) 2220.8 0.000000e+00 1281/1321 (96%) EPI587541 A/Environment/Yunnan/DQ8/2015 (A/H5N6) segment 6 (NA) 2220.8 0.000000e+00 1280/1321 (96%) EPI587533 A/Environment/Yunnan/DQ5/2015 (A/H5N6) segment 6 (NA) 2220.8 0.000000e+00 1281/1321 (96%) EPI641395 A/chicken/Yunnan/22/2015 (A/H5N6) segment 6 (NA) 2217.1 0.000000e+00 1275/1313 (97%) EPI641393 A/chicken/Yunnan/19/2015 (A/H5N6) segment 6 (NA) 2217.1 0.000000e+00 1275/1313 (97%) EPI839172 A/Syrrhaptes paradoxus/Guangdong/ZH283/2015 (A/H5N6) segment 6 (NA) 2215.3 0.000000e+00 1280/1321 (96%) EPI681352 A/chicken/Zhejiang/727022/2014 (A/H5N6) segment 6 (NA) 2215.3 0.000000e+00 1281/1322 (96%) EPI683010 A/turtledove/Wuhan/HKBJ07/2015 (A/H5N6) segment 6 (NA) 2213.4 0.000000e+00 1280/1322 (96%) EPI683011 A/turtledove/Wuhan/WHBJ12/2014 (A/H5N6) segment 6 (NA) 2209.7 0.000000e+00 1280/1322 (96%) EPI681353 A/chicken/Zhejiang/727026/2014 (A/H5N6) segment 6 (NA) 2209.7 0.000000e+00 1280/1322 (96%) EPI760091 A/feline/Guangdong/1/2015 (A/H5N6) segment 6 (NA) 2204.2 0.000000e+00 1278/1321 (96%) EPI683018 A/duck/Wuhan/WHYF03/2015 (A/H5N6) segment 6 (NA) 2204.2 0.000000e+00 1279/1322 (96%) EPI683017 A/duck/Wuhan/WHYF02/2015 (A/H5N6) segment 6 (NA) 2204.2 0.000000e+00 1279/1322 (96%) EPI683014 A/turtledove/Wuhan/HKBJ43/2015 (A/H5N6) segment 6 (NA) 2204.2 0.000000e+00 1279/1322 (96%) EPI683013 A/turtledove/Wuhan/HKBJ27/2015 (A/H5N6) segment 6 (NA) 2204.2 0.000000e+00 1279/1322 (96%) EPI683012 A/turtledove/Wuhan/WHBJ28/2014 (A/H5N6) segment 6 (NA) 2204.2 0.000000e+00 1279/1322 (96%) EPI683009 A/turtledove/Wuhan/WHBJ26/2014 (A/H5N6) segment 6 (NA) 2204.2 0.000000e+00 1279/1322 (96%) EPI681344 A/goose/Zhejiang/727092/2014 (A/H5N6) segment 6 (NA) 2204.2 0.000000e+00 1279/1322 (96%) EPI681343 A/duck/Zhejiang/727158/2014 (A/H5N6) segment 6 (NA) 2204.2 0.000000e+00 1279/1322 (96%) EPI593898 A/duck/Guangzhou/41227/2014 (A/H5N6) segment 6 (NA) 2204.2 0.000000e+00 1280/1323 (96%) EPI703646 A/duck/Eastern China/S0322/2014 (A/H5N6) segment 6 (NA) 2200.5 0.000000e+00 1280/1324 (96%) EPI681354 A/chicken/Zhejiang/727155/2014 (A/H5N6) segment 6 (NA) 2198.6 0.000000e+00 1279/1323 (96%) EPI593891 A/Guangzhou/39715/2014 (A/H5N6) segment 6 (NA) 2198.6 0.000000e+00 1277/1321 (96%) EPI760098 A/feline/Guangdong/2/2015 (A/H5N6) segment 6 (NA) 2193.1 0.000000e+00 1276/1321 (96%) EPI687145 A/peregrine_falcon/Hong_Kong/04955/2015 (A/H5N6) segment 6 (NA) 2193.1 0.000000e+00 1276/1321 (96%) EPI683020 A/duck/Wuhan/JXYFB22/2015 (A/H5N6) segment 6 (NA) 2193.1 0.000000e+00 1278/1323 (96%) EPI687155 A/Oriental_magpie_robin/Hong_Kong/16759/2015 (A/H5N6) segment 6 (NA) 2187.6 0.000000e+00 1276/1322 (96%) EPI823454 A/duck/Vietnam/LBM816/2015 (A/H5N6) segment 6 (NA) 2182.0 0.000000e+00 1274/1321 (96%) EPI817166 A/muscovy duck/Vietnam/LBM818/2015 (A/H5N6) segment 6 (NA) 2182.0 0.000000e+00 1274/1321 (96%) EPI817164 A/muscovy duck/Vietnam/LBM817/2015 (A/H5N6) segment 6 (NA) 2182.0 0.000000e+00 1274/1321 (96%) EPI314283 A/swine/Guangdong/K6/2010 (A/H6N6) segment 6 (NA) 2182.0 0.000000e+00 1274/1321 (96%) EPI687702 A/Shenzhen/1/2016 (A/H5N6) segment 6 (NA) 2170.9 0.000000e+00 1273/1322 (96%) EPI687153 A/Oriental_magpie_robin/Hong_Kong/06154/2015 (A/H5N6) segment 6 (NA) 2165.4 0.000000e+00 1272/1322 (96%) EPI500957 A/Duck/Guangdong/S1419/2011 (A/H6N6) segment 6 (NA) 2165.4 0.000000e+00 1271/1321 (96%) EPI823456 A/duck/Vietnam/LBM824/2015 (A/H5N6) segment 6 (NA) 2159.9 0.000000e+00 1272/1323 (96%) EPI817168 A/muscovy duck/Vietnam/LBM823/2015 (A/H5N6) segment 6 (NA) 2159.9 0.000000e+00 1272/1323 (96%) EPI684556 A/Environment/Shenzhen/2/2015 (A/H5N6) segment 6 (NA) 2148.8 0.000000e+00 1270/1323 (95%) EPI684548 A/Environment/Shenzhen/1/2015 (A/H5N6) segment 6 (NA) 2148.8 0.000000e+00 1270/1323 (95%) EPI684540 A/Shenzhen/1/2015 (A/H5N6) segment 6 (NA) 2148.8 0.000000e+00 1269/1322 (95%) EPI681345 A/goose/Zhejiang/727110/2014 (A/H5N6) segment 6 (NA) 2148.8 0.000000e+00 1270/1323 (95%) EPI758872 A/environment/Guangdong/GZ670/2015 (A/H5N6) segment 6 (NA) 2145.1 0.000000e+00 1180/1190 (99%) EPI823452 A/duck/Vietnam/LBM813/2015 (A/H5N6) segment 6 (NA) 2143.2 0.000000e+00 1269/1323 (95%) EPI817170 A/duck/Vietnam/LBM812/2015 (A/H5N6) segment 6 (NA) 2143.2 0.000000e+00 1269/1323 (95%) EPI817162 A/muscovy duck/Vietnam/LBM810/2015 (A/H5N6) segment 6 (NA) 2143.2 0.000000e+00 1269/1323 (95%) EPI817160 A/muscovy duck/Vietnam/LBM809/2015 (A/H5N6) segment 6 (NA) 2143.2 0.000000e+00 1269/1323 (95%) EPI817158 A/muscovy duck/LBM806/2015 (A/H5N6) segment 6 (NA) 2143.2 0.000000e+00 1270/1324 (95%) EPI813326 A/muscovy duck/LBM803/2015 (A/H5N6) segment 6 (NA) 2143.2 0.000000e+00 1270/1324 (95%) EPI806644 A/duck/Vietnam/LBM808/2015 (A/H5N6) segment 6 (NA) 2143.2 0.000000e+00 1269/1323 (95%) EPI691372 A/ Guangdong /SZ872/2015(H5N6) (A/H5N6) segment 6 (NA) 2134.0 0.000000e+00 1265/1320 (95%) EPI753550 A/chicken/Zhejiang/74154/2015 (A/H6N6) segment 6 (NA) 2121.1 0.000000e+00 1263/1321 (95%) EPI602040 A/duck/Ningbo/3262/2013 (A/H0) segment 6 (NA) 2115.5 0.000000e+00 1262/1321 (95%) EPI753547 A/chicken/Zhejiang/110144/2015 (A/H6N6) segment 6 (NA) 2110.0 0.000000e+00 1261/1321 (95%) EPI501037 A/Duck/Guangdong/S4251/2010 (A/H6N6) segment 6 (NA) 2098.9 0.000000e+00 1257/1318 (95%) EPI758869 A/environment/Guangdong/GZ693/2015 (A/H5N6) segment 6 (NA) 2095.2 0.000000e+00 1171/1190 (98%) EPI550758 A/duck/Laos/LPQ002/2014 (A/H5N6) segment 6 (NA) 2091.5 0.000000e+00 1196/1228 (97%) EPI550760 A/chicken/Laos/XBY003/2014 (A/H5N6) segment 6 (NA) 2067.5 0.000000e+00 1179/1209 (97%) EPI364045 A/duck/Shantou/1984/2007 (A/H6N6) segment 6 (NA) 2060.1 0.000000e+00 1253/1322 (94%) EPI753546 A/chicken/Zhejiang/110102/2015 (A/H6N6) segment 6 (NA) 2043.5 0.000000e+00 1250/1322 (94%) EPI758871 A/environment/Guangdong/ZS558/2015 (A/H5N6) segment 6 (NA) 2017.7 0.000000e+00 1157/1190 (97%) EPI550769 A/duck/Laos/XBY004/2014 (A/H5N6) segment 6 (NA) 1997.3 0.000000e+00 1132/1158 (97%) EPI364271 A/duck/Shantou/12958/2006 (A/H6N6) segment 6 (NA) 1991.8 0.000000e+00 1237/1315 (94%) EPI268291 A/duck/Fujian/11661/2005 (A/H6N6) segment 6 (NA) 1962.3 0.000000e+00 1233/1317 (93%) EPI363773 A/duck/Fujian/958/2006 (A/H6N6) segment 6 (NA) 1956.7 0.000000e+00 1232/1317 (93%) EPI717875 A/environment/Hunan-Changsha/1/2009 (A/H6N6) segment 6 (NA) 1927.2 0.000000e+00 1233/1326 (92%) EPI717859 A/environment/Jiangxi/24/2009 (A/H6N6) segment 6 (NA) 1916.1 0.000000e+00 1231/1326 (92%) EPI268294 A/mallard/Shantou/972/2005 (A/H6N6) segment 6 (NA) 1851.5 0.000000e+00 1127/1189 (94%) EPI268297 A/duck/Shantou/6233/2004 (A/H6N6) segment 6 (NA) 1840.4 0.000000e+00 1125/1189 (94%) EPI364554 A/duck/Shantou/2798/2006 (A/H6N6) segment 6 (NA) 1831.2 0.000000e+00 1125/1191 (94%) EPI364265 A/duck/Shantou/11034/2006 (A/H6N6) segment 6 (NA) 1831.2 0.000000e+00 1125/1191 (94%) EPI363601 A/wild duck/Shantou/2441/2006 (A/H6N6) segment 6 (NA) 1831.2 0.000000e+00 1125/1191 (94%) EPI365066 A/duck/Fujian/6605/2006 (A/H6N6) segment 6 (NA) 1829.3 0.000000e+00 1123/1189 (94%) EPI365042 A/duck/Fujian/1674/2006 (A/H6N6) segment 6 (NA) 1829.3 0.000000e+00 1123/1189 (94%) EPI365031 A/duck/Fujian/1641/2006 (A/H6N6) segment 6 (NA) 1829.3 0.000000e+00 1123/1189 (94%) EPI364446 A/duck/Fujian/3574/2006 (A/H6N6) segment 6 (NA) 1829.3 0.000000e+00 1123/1189 (94%) EPI364444 A/duck/Fujian/3046/2006 (A/H6N6) segment 6 (NA) 1829.3 0.000000e+00 1123/1189 (94%) EPI364339 A/duck/Fujian/2292/2006 (A/H6N6) segment 6 (NA) 1829.3 0.000000e+00 1123/1189 (94%) EPI363837 A/duck/Fujian/6708/2006 (A/H6N6) segment 6 (NA) 1829.3 0.000000e+00 1123/1189 (94%) EPI363797 A/duck/Fujian/2854/2006 (A/H6N6) segment 6 (NA) 1829.3 0.000000e+00 1123/1189 (94%) EPI268292 A/duck/Shantou/11392/2005 (A/H6N6) segment 6 (NA) 1829.3 0.000000e+00 1123/1189 (94%) EPI364732 A/duck/Shantou/9350/2006 (A/H6N6) segment 6 (NA) 1825.6 0.000000e+00 1124/1191 (94%) EPI364244 A/duck/Shantou/5697/2006 (A/H6N6) segment 6 (NA) 1825.6 0.000000e+00 1124/1191 (94%) EPI364227 A/duck/Shantou/3389/2006 (A/H6N6) segment 6 (NA) 1825.6 0.000000e+00 1124/1191 (94%) EPI365123 A/duck/Fujian/2087/2007 (A/H6N6) segment 6 (NA) 1823.8 0.000000e+00 1122/1189 (94%) EPI365058 A/duck/Fujian/2606/2006 (A/H6N6) segment 6 (NA) 1823.8 0.000000e+00 1122/1189 (94%) EPI364450 A/duck/Fujian/6222/2006 (A/H6N6) segment 6 (NA) 1823.8 0.000000e+00 1122/1189 (94%) EPI364337 A/duck/Fujian/1904/2006 (A/H6N6) segment 6 (NA) 1823.8 0.000000e+00 1122/1189 (94%) EPI363829 A/duck/Fujian/5498/2006 (A/H6N6) segment 6 (NA) 1823.8 0.000000e+00 1122/1189 (94%) EPI268299 A/wild duck/Shantou/192/2004 (A/H6N6) segment 6 (NA) 1823.8 0.000000e+00 1122/1189 (94%) EPI268293 A/duck/Shantou/8365/2005 (A/H6N6) segment 6 (NA) 1823.8 0.000000e+00 1122/1189 (94%) EPI268290 A/duck/Fujian/12035/2005 (A/H6N6) segment 6 (NA) 1823.8 0.000000e+00 1122/1189 (94%) EPI364728 A/duck/Shantou/7429/2006 (A/H6N6) segment 6 (NA) 1820.1 0.000000e+00 1123/1191 (94%) EPI364331 A/duck/Shantou/19616/2006 (A/H6N6) segment 6 (NA) 1820.1 0.000000e+00 1123/1191 (94%) EPI364303 A/duck/Shantou/16158/2006 (A/H6N6) segment 6 (NA) 1820.1 0.000000e+00 1123/1191 (94%) EPI364301 A/duck/Shantou/16124/2006 (A/H6N6) segment 6 (NA) 1820.1 0.000000e+00 1123/1191 (94%) EPI364299 A/duck/Shantou/15940/2006 (A/H6N6) segment 6 (NA) 1820.1 0.000000e+00 1124/1192 (94%) EPI364287 A/duck/Shantou/14877/2006 (A/H6N6) segment 6 (NA) 1820.1 0.000000e+00 1123/1191 (94%) EPI364277 A/duck/Shantou/13655/2006 (A/H6N6) segment 6 (NA) 1820.1 0.000000e+00 1123/1191 (94%) EPI364256 A/duck/Shantou/9702/2006 (A/H6N6) segment 6 (NA) 1820.1 0.000000e+00 1123/1191 (94%) EPI364254 A/duck/Shantou/9374/2006 (A/H6N6) segment 6 (NA) 1820.1 0.000000e+00 1123/1191 (94%) EPI363681 A/duck/Shantou/14841/2006 (A/H6N6) segment 6 (NA) 1820.1 0.000000e+00 1123/1191 (94%) EPI365080 A/duck/Fujian/8807/2006 (A/H6N6) segment 6 (NA) 1818.2 0.000000e+00 1122/1190 (94%) EPI365074 A/duck/Fujian/6955/2006 (A/H6N6) segment 6 (NA) 1818.2 0.000000e+00 1121/1189 (94%) EPI365050 A/duck/Fujian/2281/2006 (A/H6N6) segment 6 (NA) 1818.2 0.000000e+00 1122/1190 (94%) EPI364458 A/duck/Fujian/7652/2006 (A/H6N6) segment 6 (NA) 1818.2 0.000000e+00 1122/1190 (94%) EPI363805 A/duck/Fujian/3354/2006 (A/H6N6) segment 6 (NA) 1818.2 0.000000e+00 1121/1189 (94%) EPI363781 A/duck/Fujian/1651/2006 (A/H6N6) segment 6 (NA) 1818.2 0.000000e+00 1121/1189 (94%) EPI364861 A/duck/Shantou/18088/2006 (A/H6N6) segment 6 (NA) 1814.5 0.000000e+00 1123/1192 (94%) EPI364804 A/duck/Shantou/15048/2006 (A/H6N6) segment 6 (NA) 1814.5 0.000000e+00 1122/1191 (94%) EPI364770 A/duck/Shantou/10143/2006 (A/H6N6) segment 6 (NA) 1814.5 0.000000e+00 1122/1191 (94%) EPI364626 A/duck/Shantou/5041/2006 (A/H6N6) segment 6 (NA) 1814.5 0.000000e+00 1123/1192 (94%) EPI364283 A/duck/Shantou/14607/2006 (A/H6N6) segment 6 (NA) 1814.5 0.000000e+00 1122/1191 (94%) EPI364267 A/duck/Shantou/11228/2006 (A/H6N6) segment 6 (NA) 1814.5 0.000000e+00 1122/1191 (94%) EPI364263 A/duck/Shantou/10284/2006 (A/H6N6) segment 6 (NA) 1814.5 0.000000e+00 1122/1191 (94%) EPI363593 A/duck/Shantou/1165/2006 (A/H6N6) segment 6 (NA) 1814.5 0.000000e+00 1123/1192 (94%) EPI268289 A/goose/Shantou/18647/2005 (A/H6N6) segment 6 (NA) 1814.5 0.000000e+00 1122/1191 (94%) EPI364532 A/duck/Fujian/6908/2007 (A/H6N6) segment 6 (NA) 1812.7 0.000000e+00 1121/1190 (94%) EPI364468 A/duck/Fujian/9308/2006 (A/H6N6) segment 6 (NA) 1812.7 0.000000e+00 1121/1190 (94%) EPI364464 A/duck/Fujian/8388/2006 (A/H6N6) segment 6 (NA) 1812.7 0.000000e+00 1121/1190 (94%) EPI364462 A/duck/Fujian/8114/2006 (A/H6N6) segment 6 (NA) 1812.7 0.000000e+00 1121/1190 (94%) EPI364454 A/duck/Fujian/6908/2006 (A/H6N6) segment 6 (NA) 1812.7 0.000000e+00 1121/1190 (94%) EPI364452 A/duck/Fujian/6634/2006 (A/H6N6) segment 6 (NA) 1812.7 0.000000e+00 1121/1190 (94%) EPI364335 A/duck/Fujian/1348/2006 (A/H6N6) segment 6 (NA) 1812.7 0.000000e+00 1120/1189 (94%) EPI364273 A/duck/Shantou/13252/2006 (A/H6N6) segment 6 (NA) 1812.7 0.000000e+00 1118/1186 (94%) EPI363877 A/duck/Fujian/11418/2006 (A/H6N6) segment 6 (NA) 1812.7 0.000000e+00 1121/1190 (94%) EPI363853 A/duck/Fujian/9062/2006 (A/H6N6) segment 6 (NA) 1812.7 0.000000e+00 1121/1190 (94%) EPI364810 A/duck/Shantou/16147/2006 (A/H6N6) segment 6 (NA) 1809.0 0.000000e+00 1122/1192 (94%) EPI364784 A/duck/Shantou/14531/2006 (A/H6N6) segment 6 (NA) 1809.0 0.000000e+00 1121/1191 (94%) EPI364297 A/duck/Shantou/15798/2006 (A/H6N6) segment 6 (NA) 1809.0 0.000000e+00 1121/1191 (94%) EPI364289 A/duck/Shantou/15037/2006 (A/H6N6) segment 6 (NA) 1809.0 0.000000e+00 1121/1191 (94%) EPI364281 A/duck/Shantou/14565/2006 (A/H6N6) segment 6 (NA) 1809.0 0.000000e+00 1121/1191 (94%) EPI364279 A/duck/Shantou/14163/2006 (A/H6N6) segment 6 (NA) 1809.0 0.000000e+00 1121/1191 (94%) EPI364239 A/duck/Shantou/4980/2006 (A/H6N6) segment 6 (NA) 1809.0 0.000000e+00 1122/1192 (94%) EPI268288 A/duck/Shantou/20313/2005 (A/H6N6) segment 6 (NA) 1809.0 0.000000e+00 1121/1191 (94%) EPI365155 A/duck/Fujian/2749/2007 (A/H6N6) segment 6 (NA) 1807.1 0.000000e+00 1120/1190 (94%) EPI365147 A/duck/Fujian/2483/2007 (A/H6N6) segment 6 (NA) 1807.1 0.000000e+00 1120/1190 (94%) EPI365131 A/duck/Fujian/2278/2007 (A/H6N6) segment 6 (NA) 1807.1 0.000000e+00 1120/1190 (94%) EPI365115 A/duck/Fujian/1879/2007 (A/H6N6) segment 6 (NA) 1807.1 0.000000e+00 1120/1190 (94%) EPI365107 A/duck/Fujian/912/2007 (A/H6N6) segment 6 (NA) 1807.1 0.000000e+00 1120/1190 (94%) EPI365103 A/duck/Fujian/816/2007 (A/H6N6) segment 6 (NA) 1807.1 0.000000e+00 1120/1190 (94%) EPI365095 A/duck/Fujian/402/2007 (A/H6N6) segment 6 (NA) 1807.1 0.000000e+00 1120/1190 (94%) EPI364512 A/duck/Fujian/3756/2007 (A/H6N6) segment 6 (NA) 1807.1 0.000000e+00 1120/1190 (94%) EPI364497 A/duck/Fujian/2582/2007 (A/H6N6) segment 6 (NA) 1807.1 0.000000e+00 1120/1190 (94%) EPI364494 A/duck/Fujian/1772/2007 (A/H6N6) segment 6 (NA) 1807.1 0.000000e+00 1120/1190 (94%) EPI364480 A/duck/Fujian/576/2007 (A/H6N6) segment 6 (NA) 1807.1 0.000000e+00 1120/1190 (94%) EPI364474 A/duck/Fujian/118/2007 (A/H6N6) segment 6 (NA) 1807.1 0.000000e+00 1120/1190 (94%) EPI364470 A/duck/Fujian/10706/2006 (A/H6N6) segment 6 (NA) 1807.1 0.000000e+00 1120/1190 (94%) EPI364448 A/duck/Fujian/4008/2006 (A/H6N6) segment 6 (NA) 1807.1 0.000000e+00 1119/1189 (94%) EPI364341 A/duck/Fujian/2595/2006 (A/H6N6) segment 6 (NA) 1807.1 0.000000e+00 1119/1189 (94%) EPI364844 A/duck/Shantou/17036/2006 (A/H6N6) segment 6 (NA) 1803.5 0.000000e+00 1121/1192 (94%) EPI364812 A/duck/Shantou/16144/2006 (A/H6N6) segment 6 (NA) 1803.5 0.000000e+00 1120/1191 (94%) EPI364634 A/duck/Shantou/5051/2006 (A/H6N6) segment 6 (NA) 1803.5 0.000000e+00 1121/1192 (94%) EPI364305 A/duck/Shantou/16440/2006 (A/H6N6) segment 6 (NA) 1803.5 0.000000e+00 1120/1191 (94%) EPI364293 A/duck/Shantou/15479/2006 (A/H6N6) segment 6 (NA) 1803.5 0.000000e+00 1120/1191 (94%) EPI364235 A/duck/Shantou/4414/2006 (A/H6N6) segment 6 (NA) 1803.5 0.000000e+00 1121/1192 (94%) EPI364037 A/duck/Shantou/1240/2007 (A/H6N6) segment 6 (NA) 1803.5 0.000000e+00 1121/1192 (94%) EPI363665 A/wild duck/Shantou/9466/2006 (A/H6N6) segment 6 (NA) 1803.5 0.000000e+00 1120/1191 (94%) EPI365162 A/duck/Fujian/10950/2006 (A/H6N6) segment 6 (NA) 1801.6 0.000000e+00 1119/1190 (94%) EPI365139 A/duck/Fujian/2356/2007 (A/H6N6) segment 6 (NA) 1801.6 0.000000e+00 1119/1190 (94%) EPI365088 A/duck/Fujian/145/2007 (A/H6N6) segment 6 (NA) 1801.6 0.000000e+00 1119/1190 (94%) EPI364530 A/duck/Fujian/6860/2007 (A/H6N6) segment 6 (NA) 1801.6 0.000000e+00 1119/1190 (94%) EPI364520 A/duck/Fujian/4719/2007 (A/H6N6) segment 6 (NA) 1801.6 0.000000e+00 1119/1190 (94%) EPI364510 A/duck/Fujian/3460/2007 (A/H6N6) segment 6 (NA) 1801.6 0.000000e+00 1119/1190 (94%) EPI364502 A/duck/Fujian/2818/2007 (A/H6N6) segment 6 (NA) 1801.6 0.000000e+00 1119/1190 (94%) EPI364492 A/duck/Fujian/1600/2007 (A/H6N6) segment 6 (NA) 1801.6 0.000000e+00 1119/1190 (94%) EPI364490 A/duck/Fujian/1322/2007 (A/H6N6) segment 6 (NA) 1801.6 0.000000e+00 1119/1190 (94%) EPI364460 A/duck/Fujian/7830/2006 (A/H6N6) segment 6 (NA) 1801.6 0.000000e+00 1118/1189 (94%) EPI364117 A/duck/Fujian/3264/2007 (A/H6N6) segment 6 (NA) 1801.6 0.000000e+00 1119/1190 (94%) EPI364092 A/duck/Fujian/2018/2007 (A/H6N6) segment 6 (NA) 1801.6 0.000000e+00 1119/1190 (94%) EPI364076 A/duck/Fujian/1565/2007 (A/H6N6) segment 6 (NA) 1801.6 0.000000e+00 1119/1190 (94%) EPI364060 A/duck/Fujian/378/2007 (A/H6N6) segment 6 (NA) 1801.6 0.000000e+00 1119/1190 (94%) EPI363861 A/duck/Fujian/10774/2006 (A/H6N6) segment 6 (NA) 1801.6 0.000000e+00 1118/1189 (94%) EPI363813 A/duck/Fujian/3796/2006 (A/H6N6) segment 6 (NA) 1801.6 0.000000e+00 1118/1189 (94%) EPI363739 A/duck/Fujian/2787/2007 (A/H6N6) segment 6 (NA) 1801.6 0.000000e+00 1119/1190 (94%) EPI364870 A/duck/Shantou/18729/2006 (A/H6N6) segment 6 (NA) 1797.9 0.000000e+00 1120/1192 (93%) EPI364852 A/duck/Shantou/17081/2006 (A/H6N6) segment 6 (NA) 1797.9 0.000000e+00 1120/1192 (93%) EPI364586 A/duck/Shantou/4129/2006 (A/H6N6) segment 6 (NA) 1797.9 0.000000e+00 1120/1192 (93%) EPI364329 A/duck/Shantou/19369/2006 (A/H6N6) segment 6 (NA) 1797.9 0.000000e+00 1120/1192 (93%) EPI364317 A/duck/Shantou/18070/2006 (A/H6N6) segment 6 (NA) 1797.9 0.000000e+00 1120/1192 (93%) EPI364315 A/duck/Shantou/17800/2006 (A/H6N6) segment 6 (NA) 1797.9 0.000000e+00 1120/1192 (93%) EPI364309 A/duck/Shantou/16810/2006 (A/H6N6) segment 6 (NA) 1797.9 0.000000e+00 1120/1192 (93%) EPI364237 A/duck/Shantou/4938/2006 (A/H6N6) segment 6 (NA) 1797.9 0.000000e+00 1119/1191 (93%) EPI364013 A/duck/Shantou/358/2007 (A/H6N6) segment 6 (NA) 1797.9 0.000000e+00 1119/1191 (93%) EPI363757 A/duck/Shantou/19597/2006 (A/H6N6) segment 6 (NA) 1797.9 0.000000e+00 1120/1192 (93%) EPI363689 A/duck/Shantou/17058/2006 (A/H6N6) segment 6 (NA) 1797.9 0.000000e+00 1120/1192 (93%) EPI363633 A/duck/Shantou/4636/2006 (A/H6N6) segment 6 (NA) 1797.9 0.000000e+00 1119/1191 (93%) EPI365109 A/duck/Fujian/1107/2007 (A/H6N6) segment 6 (NA) 1796.1 0.000000e+00 1119/1191 (93%) EPI365099 A/duck/Fujian/679/2007 (A/H6N6) segment 6 (NA) 1796.1 0.000000e+00 1118/1190 (93%) EPI364997 A/duck/Fujian/7375/2007 (A/H6N6) segment 6 (NA) 1796.1 0.000000e+00 1118/1190 (93%) EPI364940 A/duck/Fujian/4676/2007 (A/H6N6) segment 6 (NA) 1796.1 0.000000e+00 1119/1191 (93%) EPI364896 A/duck/Fujian/4224/2007 (A/H6N6) segment 6 (NA) 1796.1 0.000000e+00 1118/1190 (93%) EPI364888 A/duck/Fujian/2984/2007 (A/H6N6) segment 6 (NA) 1796.1 0.000000e+00 1118/1190 (93%) EPI364514 A/duck/Fujian/4185/2007 (A/H6N6) segment 6 (NA) 1796.1 0.000000e+00 1119/1191 (93%) EPI364504 A/duck/Fujian/2969/2007 (A/H6N6) segment 6 (NA) 1796.1 0.000000e+00 1118/1190 (93%) EPI364201 A/duck/Fujian/7130/2007 (A/H6N6) segment 6 (NA) 1796.1 0.000000e+00 1118/1190 (93%) EPI364187 A/duck/Fujian/7818/2007 (A/H6N6) segment 6 (NA) 1796.1 0.000000e+00 1118/1190 (93%) EPI364109 A/duck/Fujian/2321/2007 (A/H6N6) segment 6 (NA) 1796.1 0.000000e+00 1118/1190 (93%) EPI364790 A/duck/Shantou/14543/2006 (A/H6N6) segment 6 (NA) 1792.4 0.000000e+00 1118/1191 (93%) EPI364325 A/duck/Shantou/19097/2006 (A/H6N6) segment 6 (NA) 1792.4 0.000000e+00 1118/1191 (93%) EPI364323 A/duck/Shantou/18765/2006 (A/H6N6) segment 6 (NA) 1792.4 0.000000e+00 1118/1191 (93%) EPI364321 A/duck/Shantou/18709/2006 (A/H6N6) segment 6 (NA) 1792.4 0.000000e+00 1119/1192 (93%) EPI364313 A/duck/Shantou/17426/2006 (A/H6N6) segment 6 (NA) 1792.4 0.000000e+00 1119/1192 (93%) EPI364295 A/duck/Shantou/15772/2006 (A/H6N6) segment 6 (NA) 1792.4 0.000000e+00 1118/1191 (93%) EPI364021 A/duck/Shantou/494/2007 (A/H6N6) segment 6 (NA) 1792.4 0.000000e+00 1118/1191 (93%) EPI365092 A/duck/Fujian/331/2007 (A/H6N6) segment 6 (NA) 1790.5 0.000000e+00 1119/1193 (93%) EPI365007 A/duck/Fujian/7608/2007 (A/H6N6) segment 6 (NA) 1790.5 0.000000e+00 1117/1190 (93%) EPI364952 A/duck/Fujian/5239/2007 (A/H6N6) segment 6 (NA) 1790.5 0.000000e+00 1117/1190 (93%) EPI364528 A/duck/Fujian/6182/2007 (A/H6N6) segment 6 (NA) 1790.5 0.000000e+00 1117/1190 (93%) EPI364456 A/duck/Fujian/7324/2006 (A/H6N6) segment 6 (NA) 1790.5 0.000000e+00 1116/1189 (93%) EPI364133 A/duck/Fujian/4652/2007 (A/H6N6) segment 6 (NA) 1790.5 0.000000e+00 1118/1191 (93%) EPI364102 A/duck/Fujian/2060/2007 (A/H6N6) segment 6 (NA) 1790.5 0.000000e+00 1117/1190 (93%) EPI364067 A/duck/Fujian/603/2007 (A/H6N6) segment 6 (NA) 1790.5 0.000000e+00 1117/1190 (93%) EPI364995 A/duck/Fujian/7348/2007 (A/H6N6) segment 6 (NA) 1785.0 0.000000e+00 1116/1190 (93%) EPI364968 A/duck/Fujian/5784/2007 (A/H6N6) segment 6 (NA) 1785.0 0.000000e+00 1117/1191 (93%) EPI364958 A/duck/Fujian/5429/2007 (A/H6N6) segment 6 (NA) 1785.0 0.000000e+00 1117/1191 (93%) EPI364948 A/duck/Fujian/4952/2007 (A/H6N6) segment 6 (NA) 1785.0 0.000000e+00 1117/1191 (93%) EPI364925 A/duck/Fujian/3059/2007 (A/H6N6) segment 6 (NA) 1785.0 0.000000e+00 1116/1190 (93%) EPI364536 A/duck/Fujian/8089/2007 (A/H6N6) segment 6 (NA) 1785.0 0.000000e+00 1116/1190 (93%) EPI364522 A/duck/Fujian/5198/2007 (A/H6N6) segment 6 (NA) 1785.0 0.000000e+00 1116/1190 (93%) EPI364518 A/duck/Fujian/4509/2007 (A/H6N6) segment 6 (NA) 1785.0 0.000000e+00 1117/1191 (93%) EPI364516 A/duck/Fujian/4252/2007 (A/H6N6) segment 6 (NA) 1785.0 0.000000e+00 1116/1190 (93%) EPI364500 A/duck/Fujian/2724/2007 (A/H6N6) segment 6 (NA) 1785.0 0.000000e+00 1116/1190 (93%) EPI364179 A/duck/Fujian/7794/2007 (A/H6N6) segment 6 (NA) 1785.0 0.000000e+00 1116/1190 (93%) EPI364149 A/duck/Fujian/5474/2007 (A/H6N6) segment 6 (NA) 1785.0 0.000000e+00 1116/1190 (93%) EPI364141 A/duck/Fujian/4936/2007 (A/H6N6) segment 6 (NA) 1785.0 0.000000e+00 1117/1191 (93%) EPI364052 A/duck/Shantou/2962/2007 (A/H6N6) segment 6 (NA) 1781.3 0.000000e+00 1116/1191 (93%) EPI365003 A/duck/Fujian/7585/2007 (A/H6N6) segment 6 (NA) 1779.4 0.000000e+00 1115/1190 (93%) EPI364986 A/duck/Fujian/6841/2007 (A/H6N6) segment 6 (NA) 1779.4 0.000000e+00 1115/1190 (93%) EPI364534 A/duck/Fujian/7387/2007 (A/H6N6) segment 6 (NA) 1779.4 0.000000e+00 1115/1190 (93%) EPI364524 A/duck/Fujian/5637/2007 (A/H6N6) segment 6 (NA) 1779.4 0.000000e+00 1115/1190 (93%) EPI364165 A/duck/Fujian/6598/2007 (A/H6N6) segment 6 (NA) 1779.4 0.000000e+00 1115/1190 (93%) EPI364084 A/duck/Fujian/1804/2007 (A/H6N6) segment 6 (NA) 1779.4 0.000000e+00 1115/1190 (93%) EPI365013 A/duck/Fujian/7844/2007 (A/H6N6) segment 6 (NA) 1773.9 0.000000e+00 1114/1190 (93%) EPI364976 A/duck/Fujian/5813/2007 (A/H6N6) segment 6 (NA) 1773.9 0.000000e+00 1115/1191 (93%) EPI364914 A/duck/Fujian/7119/2007 (A/H6N6) segment 6 (NA) 1773.9 0.000000e+00 1115/1191 (93%) EPI364125 A/duck/Fujian/4020/2007 (A/H6N6) segment 6 (NA) 1773.9 0.000000e+00 1114/1190 (93%) EPI268296 A/duck/Shantou/31/2005 (A/H6N6) segment 6 (NA) 1773.9 0.000000e+00 1113/1189 (93%) EPI268295 A/wild duck/Shantou/47/2005 (A/H6N6) segment 6 (NA) 1773.9 0.000000e+00 1113/1189 (93%) EPI364327 A/duck/Shantou/19131/2006 (A/H6N6) segment 6 (NA) 1770.2 0.000000e+00 1114/1191 (93%) EPI365040 A/duck/Fujian/7093/2007 (A/H6N6) segment 6 (NA) 1768.4 0.000000e+00 1114/1191 (93%) EPI365021 A/duck/Fujian/8349/2007 (A/H6N6) segment 6 (NA) 1768.4 0.000000e+00 1113/1190 (93%) EPI364979 A/duck/Fujian/6159/2007 (A/H6N6) segment 6 (NA) 1768.4 0.000000e+00 1113/1190 (93%) EPI364526 A/duck/Fujian/5697/2007 (A/H6N6) segment 6 (NA) 1768.4 0.000000e+00 1113/1190 (93%) EPI364195 A/duck/Fujian/8320/2007 (A/H6N6) segment 6 (NA) 1768.4 0.000000e+00 1113/1190 (93%) EPI717891 A/environment/Hunan-Changsha/2/2010 (A/H6N6) segment 6 (NA) 1762.8 0.000000e+00 1113/1191 (93%) EPI364904 A/duck/Fujian/6567/2007 (A/H6N6) segment 6 (NA) 1762.8 0.000000e+00 1114/1192 (93%) EPI601686 A/duck/Jiangxi/3961/2013 (A/H0) segment 6 (NA) 1757.3 0.000000e+00 1112/1191 (93%) EPI500925 A/Chicken/Hunan/S4495/2010 (A/H6N6) segment 6 (NA) 1757.3 0.000000e+00 1113/1192 (93%) EPI364506 A/duck/Fujian/3002/2007 (A/H6N6) segment 6 (NA) 1757.3 0.000000e+00 1111/1190 (93%) EPI345791 A/chicken/Eastern China/49/2010 (A/H6N6) segment 6 (NA) 1757.3 0.000000e+00 1111/1190 (93%) EPI345778 A/duck/Eastern China/48/2010 (A/H6N6) segment 6 (NA) 1757.3 0.000000e+00 1111/1190 (93%) EPI717867 A/environment/Jiangxi/25/2009 (A/H6N6) segment 6 (NA) 1753.6 0.000000e+00 1112/1192 (93%) EPI500973 A/Duck/Guangdong/S1663/2009 (A/H6N6) segment 6 (NA) 1753.6 0.000000e+00 1111/1191 (93%) EPI345777 A/goose/Eastern China/17/2010 (A/H6N6) segment 6 (NA) 1753.6 0.000000e+00 1113/1194 (93%) EPI717947 A/environment/Jiangxi/17/2011 (A/H6N6) segment 6 (NA) 1751.7 0.000000e+00 1112/1192 (93%) EPI590047 A/duck/Vietnam/LBM798/2014 (A/H3N6) segment 6 (NA) 1751.7 0.000000e+00 1112/1192 (93%) EPI717963 A/environment/Hunan/18/2011 (A/H6N6) segment 6 (NA) 1748.1 0.000000e+00 1110/1191 (93%) EPI717955 A/environment/Jiangxi/19/2011 (A/H6N6) segment 6 (NA) 1746.2 0.000000e+00 1111/1192 (93%) EPI364508 A/duck/Fujian/3242/2007 (A/H6N6) segment 6 (NA) 1746.2 0.000000e+00 1109/1190 (93%) EPI359259 A/duck/Hubei/5/2010 (A/H6N6) segment 6 (NA) 1742.5 0.000000e+00 1109/1191 (93%) EPI359227 A/duck/Hubei/10/2010 (A/H6N6) segment 6 (NA) 1742.5 0.000000e+00 1109/1191 (93%) EPI345780 A/duck/Eastern China/14/2010 (A/H6N6) segment 6 (NA) 1742.5 0.000000e+00 1109/1191 (93%) EPI345779 A/duck/Eastern China/16/2010 (A/H6N6) segment 6 (NA) 1742.5 0.000000e+00 1109/1191 (93%) EPI363909 A/duck/Guangxi/2281/2007 (A/H6N6) segment 6 (NA) 1738.8 0.000000e+00 1109/1191 (93%) EPI717979 A/environment/Hunan/20/2011 (A/H6N6) segment 6 (NA) 1737.0 0.000000e+00 1109/1192 (93%) EPI359251 A/duck/Hubei/5/2010 (A/H6N6) segment 6 (NA) 1737.0 0.000000e+00 1108/1191 (93%) EPI359243 A/duck/Hubei/5/2010 (A/H6N6) segment 6 (NA) 1737.0 0.000000e+00 1108/1191 (93%) EPI359235 A/duck/Hubei/2/2010 (A/H6N6) segment 6 (NA) 1737.0 0.000000e+00 1108/1191 (93%) EPI847477 A/duck/Guangxi/6121/2013 (A/H6N6) segment 6 (NA) 1735.1 0.000000e+00 1107/1190 (93%) EPI717971 A/environment/Hunan/19/2011 (A/H6N6) segment 6 (NA) 1735.1 0.000000e+00 1110/1193 (93%) EPI601637 A/duck/Jiangxi/5576/2013 (A/H0) segment 6 (NA) 1735.1 0.000000e+00 1108/1191 (93%) EPI364932 A/duck/Fujian/3076/2007 (A/H6N6) segment 6 (NA) 1735.1 0.000000e+00 1107/1190 (93%) EPI717907 A/environment/Hunan/07/2010 (A/H6N6) segment 6 (NA) 1733.3 0.000000e+00 1110/1193 (93%) EPI500909 A/Chicken/Hunan/S3003/2009 (A/H6N6) segment 6 (NA) 1731.4 0.000000e+00 1109/1193 (92%) EPI296690 A/duck/Guangxi/038/2009 (A/H6N6) segment 6 (NA) 1731.4 0.000000e+00 1108/1192 (92%) EPI717899 A/environment/Hunan/03/2010 (A/H6N6) segment 6 (NA) 1727.7 0.000000e+00 1109/1193 (92%) EPI644587 A/pigeon/Guangxi/161/2014 (A/H6N6) segment 6 (NA) 1724.0 0.000000e+00 1105/1190 (92%) EPI600976 A/duck/Jiangxi/24570/2009 (A/H0) segment 6 (NA) 1720.4 0.000000e+00 1103/1188 (92%) EPI717931 A/environment/Hunan/14/2010 (A/H6N6) segment 6 (NA) 1713.0 0.000000e+00 1106/1193 (92%) EPI717923 A/environment/Hunan/11/2010 (A/H6N6) segment 6 (NA) 1713.0 0.000000e+00 1106/1193 (92%) EPI471867 A/duck/Guangxi/GXd-4/2009 (A/H6N6) segment 6 (NA) 1709.3 0.000000e+00 1104/1192 (92%) EPI601065 A/duck/Jiangxi/5916/2008 (A/H0) segment 6 (NA) 1700.0 0.000000e+00 1100/1189 (92%) EPI708034 A/duck/Guangdong/G1345/2014 (A/H6N6) segment 6 (NA) 1696.3 0.000000e+00 1102/1192 (92%) EPI736693 A/duck/Guizhou/013/2014 (A/H6N6) segment 6 (NA) 1692.7 0.000000e+00 1099/1189 (92%) EPI717915 A/environment/Jiangxi/15/2010 (A/H6N6) segment 6 (NA) 1690.8 0.000000e+00 1100/1191 (92%) EPI601709 A/duck/Jiangxi/285/2013 (A/H0) segment 6 (NA) 1690.8 0.000000e+00 1095/1193 (91%) EPI708035 A/duck/Guangdong/G1355/2014 (A/H6N6) segment 6 (NA) 1685.3 0.000000e+00 1101/1193 (92%) EPI601646 A/duck/Jiangxi/5581/2013 (A/H0) segment 6 (NA) 1685.3 0.000000e+00 1102/1194 (92%) EPI501013 A/Duck/Guangdong/S3468/2010 (A/H6N6) segment 6 (NA) 1679.7 0.000000e+00 1097/1190 (92%) EPI753549 A/chicken/Zhejiang/514158/2015 (A/H6N6) segment 6 (NA) 1677.9 0.000000e+00 1100/1193 (92%) EPI753548 A/chicken/Zhejiang/514132/2015 (A/H6N6) segment 6 (NA) 1677.9 0.000000e+00 1100/1193 (92%) EPI753545 A/chicken/Zhejiang/727029/2014 (A/H6N6) segment 6 (NA) 1674.2 0.000000e+00 1098/1192 (92%) EPI753544 A/chicken/Zhejiang/727028/2014 (A/H6N6) segment 6 (NA) 1674.2 0.000000e+00 1098/1192 (92%) EPI753543 A/chicken/Zhejiang/727023/2014 (A/H6N6) segment 6 (NA) 1674.2 0.000000e+00 1098/1192 (92%) EPI753542 A/chicken/Zhejiang/727019/2014 (A/H6N6) segment 6 (NA) 1674.2 0.000000e+00 1098/1192 (92%) EPI753541 A/chicken/Zhejiang/727018/2014 (A/H6N6) segment 6 (NA) 1674.2 0.000000e+00 1098/1192 (92%) EPI753540 A/chicken/Zhejiang/727009/2014 (A/H6N6) segment 6 (NA) 1674.2 0.000000e+00 1098/1192 (92%) EPI753539 A/chicken/Zhejiang/727001/2014 (A/H6N6) segment 6 (NA) 1674.2 0.000000e+00 1098/1192 (92%) EPI500989 A/Duck/Guangdong/S3073/2010 (A/H6N6) segment 6 (NA) 1674.2 0.000000e+00 1096/1190 (92%) EPI500981 A/Duck/Guangdong/S1155/2011 (A/H6N6) segment 6 (NA) 1663.1 0.000000e+00 1095/1191 (91%) EPI601787 A/duck/Jiangxi/278/2013 (A/H0) segment 6 (NA) 1657.6 0.000000e+00 1098/1195 (91%) EPI599643 A/duck/Jiangxi/10304/2013 (A/H6N6) segment 6 (NA) 1657.6 0.000000e+00 1094/1191 (91%) EPI501101 A/Duck/Hunan/S4273/2010 (A/H6N6) segment 6 (NA) 1657.6 0.000000e+00 1094/1191 (91%) EPI500853 A/Chicken/Guangdong/S1311/2010 (A/H6N6) segment 6 (NA) 1655.7 0.000000e+00 1094/1191 (91%) EPI501005 A/Duck/Guangdong/S3225/2010 (A/H6N6) segment 6 (NA) 1652.0 0.000000e+00 1092/1190 (91%) EPI500893 A/Chicken/Guangxi/S4029/2010 (A/H6N6) segment 6 (NA) 1652.0 0.000000e+00 1094/1192 (91%) EPI500869 A/Chicken/Guangdong/S1414/2010 (A/H6N6) segment 6 (NA) 1652.0 0.000000e+00 1093/1191 (91%) EPI501149 A/Goose/Guangdong/S4362/2009 (A/H6N6) segment 6 (NA) 1646.5 0.000000e+00 1091/1190 (91%) EPI501133 A/Duck/Zhejiang/S4204/2010 (A/H6N6) segment 6 (NA) 1646.5 0.000000e+00 1091/1190 (91%) EPI683008 A/turtledove/Wuhan/HKBJ62/2015 (A/H6N6) segment 6 (NA) 1640.9 0.000000e+00 1092/1192 (91%) EPI501125 A/Duck/Zhejiang/S1134/2011 (A/H6N6) segment 6 (NA) 1640.9 0.000000e+00 1090/1190 (91%) EPI501117 A/Duck/Zhejiang/S1023/2010 (A/H6N6) segment 6 (NA) 1640.9 0.000000e+00 1090/1190 (91%) EPI501045 A/Duck/Guangxi/S4111/2010 (A/H6N6) segment 6 (NA) 1640.9 0.000000e+00 1090/1190 (91%) EPI601763 A/duck/Jiangxi/262/2013 (A/H0) segment 6 (NA) 1637.3 0.000000e+00 1094/1195 (91%) EPI471883 A/duck/Guangxi/GXd-7/2011 (A/H6N6) segment 6 (NA) 1635.4 0.000000e+00 1088/1189 (91%) EPI601741 A/duck/Jiangxi/32180/2013 (A/H0) segment 6 (NA) 1629.9 0.000000e+00 1090/1192 (91%) EPI461657 A/duck/Hunan/S1661/2012 (A/H6N6) segment 6 (NA) 1629.9 0.000000e+00 1087/1189 (91%) EPI569712 A/chicken/Zhejiang/6C2/2013 (A/H5N6) segment 6 (NA) 1624.3 0.000000e+00 1088/1191 (91%) EPI515017 A/duck/Hunan/749/2011 (A/H0) segment 6 (NA) 1624.3 0.000000e+00 1086/1189 (91%) EPI515007 A/duck/Hunan/747/2011 (A/H0) segment 6 (NA) 1624.3 0.000000e+00 1086/1189 (91%) EPI501021 A/Duck/Guangdong/S4018/2010 (A/H6N6) segment 6 (NA) 1624.3 0.000000e+00 1087/1190 (91%) EPI500997 A/Duck/Guangdong/S3180/2010 (A/H6N6) segment 6 (NA) 1624.3 0.000000e+00 1087/1190 (91%) EPI89026 A/Quail/Nanchang/7-026/2000 (A/H3N6) segment 6 (NA) 1624.3 0.000000e+00 1095/1198 (91%) EPI89011 A/Chicken/Nanchang/7-010/2000 (A/H3N6) segment 6 (NA) 1624.3 0.000000e+00 1095/1198 (91%) EPI574303 A/muscovy duck/Vietnam/LBM21/2011 (A/H6N6) segment 6 (NA) 1622.5 0.000000e+00 1085/1189 (91%) EPI687533 A/Enviroment/Guangdong/SS127/2013(H5N6) (A/H5N6) segment 6 (NA) 1618.8 0.000000e+00 1086/1190 (91%) EPI687490 A/Duck/Guangdong/SS1A1/2014(H5N6) (A/H5N6) segment 6 (NA) 1618.8 0.000000e+00 1086/1190 (91%) EPI590865 A/duck/Sichuan/NCXJ15/2014 (A/H5N6) segment 6 (NA) 1618.8 0.000000e+00 1087/1191 (91%) EPI585733 A/swan goose/Jilin/JL01/2014 (A/H5N6) segment 6 (NA) 1618.8 0.000000e+00 1086/1190 (91%) EPI574314 A/muscovy duck/Vietnam/LBM69/2011 (A/H6N6) segment 6 (NA) 1618.8 0.000000e+00 1085/1189 (91%) EPI471142 A/duck/Vietnam/LBM83c-1/2012 (A/H3N6) segment 6 (NA) 1618.8 0.000000e+00 1085/1189 (91%) EPI382203 A/duck/Vietnam/OIE-1213/2012 (A/H6N6) segment 6 (NA) 1618.8 0.000000e+00 1085/1189 (91%) EPI89047 A/Duck/Nanchang/8-174/2000 (A/H3N6) segment 6 (NA) 1618.8 0.000000e+00 1094/1198 (91%) EPI89040 A/Pigeon/Nanchang/8-142/2000 (A/H3N6) segment 6 (NA) 1618.8 0.000000e+00 1094/1198 (91%) EPI3095 A/duck/Siberia/701/1996 (A/H4N6) segment 6 (NA) 1618.8 0.000000e+00 1089/1193 (91%) EPI590862 A/Anas_crecca/Hubei/Chenhu1623-5/2014 (A/H5N6) segment 6 (NA) 1613.2 0.000000e+00 1087/1192 (91%) EPI590263 A/duck/Yamagata/061004/2014 (A/H6N6) segment 6 (NA) 1613.2 0.000000e+00 1087/1192 (91%) EPI569713 A/duck/Zhejiang/6D2/2013 (A/H5N6) segment 6 (NA) 1613.2 0.000000e+00 1086/1191 (91%) EPI500901 A/Chicken/Guangxi/S4381/2010 (A/H6N6) segment 6 (NA) 1613.2 0.000000e+00 1085/1190 (91%) EPI438437 A/duck/Vietnam/LBM6/2011 (A/H6N6) segment 6 (NA) 1613.2 0.000000e+00 1084/1189 (91%) EPI314233 A/wild duck/Taiwan/WB28/2000 (A/H4N6) segment 6 (NA) 1613.2 0.000000e+00 1091/1196 (91%) EPI132278 A/duck/Eastern China/160/2002 (A/H4N6) segment 6 (NA) 1613.2 0.000000e+00 1091/1196 (91%) EPI441024 A/duck/Vietnam/LBM235/2012 (A/H3N6) segment 6 (NA) 1611.4 0.000000e+00 1086/1191 (91%) EPI837638 A/migratory waterfowl/Hubei/Chenhu1347/2014 (A/H5N6) segment 6 (NA) 1607.7 0.000000e+00 1086/1192 (91%) EPI837631 A/migratory waterfowl/Hubei/Chenhu1306/2014 (A/H5N6) segment 6 (NA) 1607.7 0.000000e+00 1086/1192 (91%) EPI687517 A/Duck/Guangdong/PY503/2014(H5N6) (A/H5N6) segment 6 (NA) 1607.7 0.000000e+00 1084/1190 (91%) EPI687508 A/Duck/Guangdong/PY501/2014(H5N6) (A/H5N6) segment 6 (NA) 1607.7 0.000000e+00 1085/1191 (91%) EPI599308 A/chicken/Shenzhen/1845/2013 (A/H5N6) segment 6 (NA) 1607.7 0.000000e+00 1085/1191 (91%) EPI596432 A/muscovy duck/Vietnam/LBM541/2013 (A/H6N6) segment 6 (NA) 1607.7 0.000000e+00 1083/1189 (91%) EPI547404 A/environment/Zhenjiang/C13/2013 (A/H5N6) segment 6 (NA) 1607.7 0.000000e+00 1085/1191 (91%) EPI441019 A/duck/Vietnam/LBM185/2012 (A/H6N6) segment 6 (NA) 1607.7 0.000000e+00 1083/1189 (91%) EPI3441 A/duck/Shiga/8/2004 (A/H4N6) segment 6 (NA) 1607.7 0.000000e+00 1089/1195 (91%) EPI645975 A/environment/Jiangsu/WX175/2013 (A/H5N6) segment 6 (NA) 1602.2 0.000000e+00 1082/1188 (91%) EPI590868 A/environment/Sichuan/NCLL1/2014 (A/H5N6) segment 6 (NA) 1602.2 0.000000e+00 1084/1191 (91%) EPI590867 A/duck/Sichuan/NCXJ24/2014 (A/H5N6) segment 6 (NA) 1602.2 0.000000e+00 1085/1192 (91%) EPI590866 A/duck/Sichuan/NCXJ16/2014 (A/H5N6) segment 6 (NA) 1602.2 0.000000e+00 1085/1192 (91%) EPI590863 A/chicken/Sichuan/NCJPL1/2014 (A/H5N6) segment 6 (NA) 1602.2 0.000000e+00 1084/1191 (91%) EPI567005 A/duck/Vietnam/LBM360c1-4-1/2013 (A/H5N6) segment 6 (NA) 1602.2 0.000000e+00 1085/1192 (91%) EPI558653 A/swine/Kazakhstan/106/1985 (A/H3N6) segment 6 (NA) 1602.2 0.000000e+00 1086/1193 (91%) EPI314225 A/wild duck/Taiwan/WB2/1998 (A/H4N6) segment 6 (NA) 1602.2 0.000000e+00 1086/1193 (91%) EPI238166 A/pochard/Buryatiya/1941/2000 (A/H4N6) segment 6 (NA) 1602.2 0.000000e+00 1087/1194 (91%) EPI238159 A/pochard/Buryatiya/1903/2000 (A/H4N6) segment 6 (NA) 1602.2 0.000000e+00 1087/1194 (91%) EPI238151 A/muskrat/Buryatiya/1944/2000 (A/H4N6) segment 6 (NA) 1602.2 0.000000e+00 1087/1194 (91%) EPI238146 A/musk rat/Buryatiya/1944/2000 (A/H4N6) segment 6 (NA) 1602.2 0.000000e+00 1087/1194 (91%)
  2. Align Segment-ID Name Score E-Value Identity EPI861484 A/Mandarin_duck/Korea/K16-187-3/2016 (A/H5N6) segment 4 (HA) 3120.1 0.000000e+00 1689/1689 (100%) EPI687156 A/great_egret/Hong_Kong/00032/2016 (A/H5N6) segment 4 (HA) 3048.1 0.000000e+00 1676/1689 (99%) EPI758867 A/environment/Guangdong/GZ693/2015 (A/H5N6) segment 4 (HA) 3005.6 0.000000e+00 1671/1692 (98%) EPI760089 A/feline/Guangdong/1/2015 (A/H5N6) segment 4 (HA) 2994.5 0.000000e+00 1669/1692 (98%) EPI691378 A/ Guangdong /ZQ874/2015(H5N6) (A/H5N6) segment 4 (HA) 2994.5 0.000000e+00 1669/1692 (98%) EPI760097 A/feline/Guangdong/2/2015 (A/H5N6) segment 4 (HA) 2983.5 0.000000e+00 1667/1692 (98%) EPI593896 A/duck/Guangzhou/41227/2014 (A/H5N6) segment 4 (HA) 2983.5 0.000000e+00 1668/1693 (98%) EPI676398 A/environment/GZ/76/2014 (A/H5N2) segment 4 (HA) 2961.3 0.000000e+00 1664/1693 (98%) EPI602412 A/chicken/Dongguan/2690/2013 (A/H5N6) segment 4 (HA) 2961.3 0.000000e+00 1663/1692 (98%) EPI602045 A/chicken/Dongguan/2818/2013 (A/H0) segment 4 (HA) 2961.3 0.000000e+00 1663/1692 (98%) EPI599662 A/goose/Shantou/1806/2014 (A/H5N6) segment 4 (HA) 2955.8 0.000000e+00 1662/1692 (98%) EPI599655 A/goose/Shantou/1791/2014 (A/H5N6) segment 4 (HA) 2955.8 0.000000e+00 1662/1692 (98%) EPI599648 A/goose/Shantou/1763/2014 (A/H5N6) segment 4 (HA) 2955.8 0.000000e+00 1662/1692 (98%) EPI530054 A/duck/Jiangxi/95/2014 (A/H5N6) segment 4 (HA) 2955.8 0.000000e+00 1662/1692 (98%) EPI596610 A/duck/Vietnam/LBM758/2014 (A/H5N6) segment 4 (HA) 2952.1 0.000000e+00 1661/1692 (98%) EPI687498 A/Goose/ Guangdong /JG125/2013(H5N6) (A/H5N6) segment 4 (HA) 2950.2 0.000000e+00 1661/1692 (98%) EPI602419 A/chicken/Dongguan/3363/2013 (A/H5N6) segment 4 (HA) 2950.2 0.000000e+00 1661/1692 (98%) EPI599292 A/chicken/Shenzhen/552/2013 (A/H5N6) segment 4 (HA) 2950.2 0.000000e+00 1661/1692 (98%) EPI596598 A/muscovy duck/Vietnam/LBM756/2014 (A/H5N6) segment 4 (HA) 2950.2 0.000000e+00 1661/1692 (98%) EPI596592 A/muscovy duck/Vietnam/LBM755/2014 (A/H5N6) segment 4 (HA) 2950.2 0.000000e+00 1661/1692 (98%) EPI596586 A/muscovy duck/Vietnam/LBM754/2014 (A/H5N6) segment 4 (HA) 2950.2 0.000000e+00 1661/1692 (98%) EPI596580 A/duck/Vietnam/LBM752/2014 (A/H5N6) segment 4 (HA) 2950.2 0.000000e+00 1661/1692 (98%) EPI596574 A/duck/Vietnam/LBM751/2014 (A/H5N6) segment 4 (HA) 2950.2 0.000000e+00 1661/1692 (98%) EPI602028 A/chicken/Dongguan/4190/2013 (A/H0) segment 4 (HA) 2946.5 0.000000e+00 1660/1692 (98%) EPI703600 A/goose/Eastern China/S0513/2013 (A/H5N6) segment 4 (HA) 2944.7 0.000000e+00 1660/1692 (98%) EPI687144 A/peregrine_falcon/Hong_Kong/04955/2015 (A/H5N6) segment 4 (HA) 2944.7 0.000000e+00 1660/1692 (98%) EPI602491 A/chicken/Shenzhen/2269/2013 (A/H5N6) segment 4 (HA) 2944.7 0.000000e+00 1660/1692 (98%) EPI599339 A/duck/Dongguan/3069/2013 (A/H5N6) segment 4 (HA) 2944.7 0.000000e+00 1660/1692 (98%) EPI599320 A/chicken/Shenzhen/2464/2013 (A/H5N6) segment 4 (HA) 2944.7 0.000000e+00 1660/1692 (98%) EPI599313 A/chicken/Shenzhen/2396/2013 (A/H5N6) segment 4 (HA) 2944.7 0.000000e+00 1660/1692 (98%) EPI599299 A/chicken/Shenzhen/1395/2013 (A/H5N6) segment 4 (HA) 2944.7 0.000000e+00 1660/1692 (98%) EPI596622 A/duck/Vietnam/LBM760/2014 (A/H5N6) segment 4 (HA) 2944.7 0.000000e+00 1660/1692 (98%) EPI596616 A/duck/Vietnam/LBM759/2014 (A/H5N6) segment 4 (HA) 2944.7 0.000000e+00 1660/1692 (98%) EPI596604 A/muscovy duck/Vietnam/LBM757/2014 (A/H5N6) segment 4 (HA) 2944.7 0.000000e+00 1660/1692 (98%) EPI586256 A/Little egret/Vietnam/WBT210/2014 (A/H5N6) segment 4 (HA) 2944.7 0.000000e+00 1660/1692 (98%) EPI586255 A/Black-crowned night heron/Vietnam/WBT198/2014 (A/H5N6) segment 4 (HA) 2944.7 0.000000e+00 1660/1692 (98%) EPI586254 A/Spotted dove/Vietnam/WBT191/2014 (A/H5N6) segment 4 (HA) 2944.7 0.000000e+00 1660/1692 (98%) EPI681296 A/chicken/Zhejiang/727155/2014 (A/H5N6) segment 4 (HA) 2939.1 0.000000e+00 1659/1692 (98%) EPI601941 A/chicken/Dongguan/1100/2014 (A/H0) segment 4 (HA) 2939.1 0.000000e+00 1659/1692 (98%) EPI599346 A/chicken/Dongguan/4259/2013 (A/H5N6) segment 4 (HA) 2939.1 0.000000e+00 1659/1692 (98%) EPI599333 A/silkie chicken/Dongguan/2809/2013 (A/H5N6) segment 4 (HA) 2939.1 0.000000e+00 1659/1692 (98%) EPI599327 A/duck/Dongguan/2685/2013 (A/H5N6) segment 4 (HA) 2939.1 0.000000e+00 1659/1692 (98%) EPI593889 A/Guangzhou/39715/2014 (A/H5N6) segment 4 (HA) 2939.1 0.000000e+00 1659/1692 (98%) EPI586258 A/Chinese pond heron/Vietnam/WBT231/2014 (A/H5N6) segment 4 (HA) 2939.1 0.000000e+00 1659/1692 (98%) EPI531456 A/duck/Guangdong/GD01/2014 (A/H5N6) segment 4 (HA) 2939.1 0.000000e+00 1659/1692 (98%) EPI839147 A/Gallinula chloropus/Guangdong/GZ174/2014 (A/H5N6) segment 4 (HA) 2933.6 0.000000e+00 1658/1692 (97%) EPI681295 A/chicken/Zhejiang/727026/2014 (A/H5N6) segment 4 (HA) 2933.6 0.000000e+00 1658/1692 (97%) EPI681294 A/chicken/Zhejiang/727022/2014 (A/H5N6) segment 4 (HA) 2933.6 0.000000e+00 1658/1692 (97%) EPI681284 A/chicken/Zhejiang/727159/2014 (A/H5N2) segment 4 (HA) 2933.6 0.000000e+00 1658/1692 (97%) EPI681283 A/chicken/Zhejiang/727079/2014 (A/H5N2) segment 4 (HA) 2933.6 0.000000e+00 1658/1692 (97%) EPI645049 A/swine/Guangdong/1/2014 (A/H5N6) segment 4 (HA) 2933.6 0.000000e+00 1658/1692 (97%) EPI602477 A/chicken/Shenzhen/715/2013 (A/H5N6) segment 4 (HA) 2933.6 0.000000e+00 1658/1692 (97%) EPI599285 A/chicken/Shenzhen/433/2013 (A/H5N6) segment 4 (HA) 2933.6 0.000000e+00 1658/1692 (97%) EPI687547 A/Goose/ Guangdong /SSZYP/2015(H5N6) (A/H5N6) segment 4 (HA) 2928.1 0.000000e+00 1657/1692 (97%) EPI681287 A/goose/Zhejiang/727110/2014 (A/H5N6) segment 4 (HA) 2928.1 0.000000e+00 1657/1692 (97%) EPI681285 A/duck/Zhejiang/727158/2014 (A/H5N6) segment 4 (HA) 2928.1 0.000000e+00 1657/1692 (97%) EPI645042 A/swine/Guangdong/2/2014 (A/H5N6) segment 4 (HA) 2928.1 0.000000e+00 1657/1692 (97%) EPI602103 A/chicken/Shenzhen/2072/2013 (A/H0) segment 4 (HA) 2928.1 0.000000e+00 1657/1692 (97%) EPI590813 A/duck/Jiangxi/NCDZT1126/2014 (A/H5N6) segment 4 (HA) 2928.1 0.000000e+00 1657/1692 (97%) EPI530063 A/environment/Shenzhen/25-24/2013 (A/H5N6) segment 4 (HA) 2928.1 0.000000e+00 1657/1692 (97%) EPI736914 A/Changsha/1/2014 (A/H5N6) segment 4 (HA) 2926.2 0.000000e+00 1655/1690 (97%) EPI590806 A/duck/Jiangxi/NCDZT1123/2014 (A/H5N6) segment 4 (HA) 2922.5 0.000000e+00 1656/1692 (97%) EPI586257 A/Common moorhen/Vietnam/WBT226/2014 (A/H5N6) segment 4 (HA) 2922.5 0.000000e+00 1656/1692 (97%) EPI550768 A/duck/Laos/XBY004/2014 (A/H5N6) segment 4 (HA) 2922.5 0.000000e+00 1654/1689 (97%) EPI550763 A/duck/Laos/XBY004/2014 (A/H5N6) segment 4 (HA) 2922.5 0.000000e+00 1654/1689 (97%) EPI550759 A/chicken/Laos/XBY003/2014 (A/H5N6) segment 4 (HA) 2922.5 0.000000e+00 1654/1689 (97%) EPI550757 A/duck/Laos/LPQ002/2014 (A/H5N6) segment 4 (HA) 2922.5 0.000000e+00 1654/1689 (97%) EPI775291 A/duck/Guangzhou/021/2014 (A/H5N6) segment 4 (HA) 2917.0 0.000000e+00 1655/1692 (97%) EPI775283 A/duck/Guangzhou/018/2014 (A/H5N6) segment 4 (HA) 2917.0 0.000000e+00 1655/1692 (97%) EPI681286 A/goose/Zhejiang/727092/2014 (A/H5N6) segment 4 (HA) 2917.0 0.000000e+00 1655/1692 (97%) EPI602484 A/chicken/Shenzhen/1061/2013 (A/H5N6) segment 4 (HA) 2917.0 0.000000e+00 1655/1692 (97%) EPI550752 A/chicken/Laos/LPQ001/2014 (A/H5N6) segment 4 (HA) 2917.0 0.000000e+00 1653/1689 (97%) EPI839170 A/Syrrhaptes paradoxus/Guangdong/ZH283/2015 (A/H5N6) segment 4 (HA) 2911.4 0.000000e+00 1654/1692 (97%) EPI768621 A/chicken/Wuxi/SC7393/2015(H5N6) (A/H5N6) segment 4 (HA) 2911.4 0.000000e+00 1654/1692 (97%) EPI645982 A/chicken/Jiangsu/WXS7393/2014 (A/H5N6) segment 4 (HA) 2911.4 0.000000e+00 1654/1692 (97%) EPI681279 A/duck/Zhejiang/727041/2014 (A/H5N2) segment 4 (HA) 2905.9 0.000000e+00 1653/1692 (97%) EPI703606 A/duck/Eastern China/S0322/2014 (A/H5N6) segment 4 (HA) 2900.4 0.000000e+00 1652/1692 (97%) EPI646024 A/chicken/Jiangsu/WXSB2/2014 (A/H5N6) segment 4 (HA) 2900.4 0.000000e+00 1652/1692 (97%) EPI682912 A/duck/Wuhan/WHYF03/2015 (A/H5N6) segment 4 (HA) 2894.8 0.000000e+00 1652/1693 (97%) EPI682911 A/duck/Wuhan/WHYF02/2015 (A/H5N6) segment 4 (HA) 2894.8 0.000000e+00 1652/1693 (97%) EPI682939 A/turtledove/Wuhan/HKBJ07/2015 (A/H5N6) segment 4 (HA) 2889.3 0.000000e+00 1651/1693 (97%) EPI682938 A/turtledove/Wuhan/WHBJ26/2014 (A/H5N6) segment 4 (HA) 2889.3 0.000000e+00 1651/1693 (97%) EPI682937 A/turtledove/Wuhan/HKBJ43/2015 (A/H5N6) segment 4 (HA) 2889.3 0.000000e+00 1651/1693 (97%) EPI682936 A/turtledove/Wuhan/HKBJ27/2015 (A/H5N6) segment 4 (HA) 2889.3 0.000000e+00 1651/1693 (97%) EPI682935 A/turtledove/Wuhan/WHBJ28/2014 (A/H5N6) segment 4 (HA) 2889.3 0.000000e+00 1651/1693 (97%) EPI682934 A/turtledove/Wuhan/WHBJ12/2014 (A/H5N6) segment 4 (HA) 2883.7 0.000000e+00 1650/1693 (97%) EPI682914 A/chicken/Wuhan/WHYJ02/2015 (A/H5N6) segment 4 (HA) 2883.7 0.000000e+00 1650/1693 (97%) EPI682913 A/chicken/Wuhan/WHYJ01/2015 (A/H5N6) segment 4 (HA) 2883.7 0.000000e+00 1650/1693 (97%) EPI681288 A/goose/Zhejiang/925036/2014 (A/H5N6) segment 4 (HA) 2883.7 0.000000e+00 1650/1693 (97%) EPI837308 A/duck/Hubei/WH18/2015 (A/H5N6) segment 4 (HA) 2878.2 0.000000e+00 1648/1692 (97%) EPI687539 A/Goose/ Guangdong /SSLBY/2015(H5N6) (A/H5N6) segment 4 (HA) 2878.2 0.000000e+00 1648/1692 (97%) EPI837307 A/duck/Hubei/XG18/2015 (A/H5N6) segment 4 (HA) 2872.7 0.000000e+00 1647/1692 (97%) EPI758868 A/environment/Guangdong/ZS558/2015 (A/H5N6) segment 4 (HA) 2872.7 0.000000e+00 1648/1693 (97%) EPI691535 A/environment/Yunnan/YN25/2015 (A/H5N6) segment 4 (HA) 2870.8 0.000000e+00 1643/1687 (97%) EPI687152 A/Oriental_magpie_robin/Hong_Kong/06154/2015 (A/H5N6) segment 4 (HA) 2870.8 0.000000e+00 1646/1691 (97%) EPI641396 A/chicken/Yunnan/25A/2015 (A/H5N6) segment 4 (HA) 2870.8 0.000000e+00 1643/1687 (97%) EPI758870 A/environment/Guangdong/GZ670/2015 (A/H5N6) segment 4 (HA) 2867.1 0.000000e+00 1646/1692 (97%) EPI703597 A/goose/Eastern China/L1214/2012 (A/H5N8) segment 4 (HA) 2861.6 0.000000e+00 1647/1694 (97%) EPI587550 A/Environment/Yunnan/DQ9/2015 (A/H5N6) segment 4 (HA) 2859.7 0.000000e+00 1642/1688 (97%) EPI587534 A/Environment/Yunnan/DQ5/2015 (A/H5N6) segment 4 (HA) 2859.7 0.000000e+00 1642/1688 (97%) EPI587542 A/Environment/Yunnan/DQ8/2015 (A/H5N6) segment 4 (HA) 2857.9 0.000000e+00 1641/1688 (97%) EPI641398 A/Yunnan/0127/2015 (A/H5N6) segment 4 (HA) 2854.2 0.000000e+00 1641/1688 (97%) EPI587558 A/Environment/Yunnan/DQ16/2015 (A/H5N6) segment 4 (HA) 2854.2 0.000000e+00 1641/1688 (97%) EPI823453 A/duck/Vietnam/LBM816/2015 (A/H5N6) segment 4 (HA) 2850.5 0.000000e+00 1643/1692 (97%) EPI817165 A/muscovy duck/Vietnam/LBM818/2015 (A/H5N6) segment 4 (HA) 2850.5 0.000000e+00 1643/1692 (97%) EPI817163 A/muscovy duck/Vietnam/LBM817/2015 (A/H5N6) segment 4 (HA) 2850.5 0.000000e+00 1643/1692 (97%) EPI587629 A/Yunnan/14564/2015 (A/H5N6) segment 4 (HA) 2848.7 0.000000e+00 1640/1688 (97%) EPI587574 A/Environment/Yunnan/DQ53/2015 (A/H5N6) segment 4 (HA) 2848.7 0.000000e+00 1640/1688 (97%) EPI684565 A/Environment/Shenzhen/3/2015 (A/H5N6) segment 4 (HA) 2845.0 0.000000e+00 1643/1693 (97%) EPI684541 A/Shenzhen/1/2015 (A/H5N6) segment 4 (HA) 2843.1 0.000000e+00 1642/1692 (97%) EPI587621 A/Yunnan/14563/2015 (A/H5N6) segment 4 (HA) 2843.1 0.000000e+00 1639/1688 (97%) EPI839139 A/Copsychus saularis/Guangdong/SW8/2014 (A/H5N6) segment 4 (HA) 2839.4 0.000000e+00 1642/1693 (96%) EPI813325 A/muscovy duck/LBM803/2015 (A/H5N6) segment 4 (HA) 2839.4 0.000000e+00 1642/1693 (96%) EPI590116 A/chicken/Tonghai/802/2014 (A/H5N1) segment 4 (HA) 2828.3 0.000000e+00 1640/1693 (96%) EPI590115 A/chicken/Tonghai/5/2014 (A/H5N1) segment 4 (HA) 2828.3 0.000000e+00 1640/1693 (96%) EPI590114 A/chicken/Tonghai/3/2014 (A/H5N1) segment 4 (HA) 2828.3 0.000000e+00 1640/1693 (96%) EPI590109 A/chicken/AnNing/1/2014 (A/H5N1) segment 4 (HA) 2828.3 0.000000e+00 1640/1693 (96%) EPI585951 A/chicken/TongHai/302/2014 (A/H5N1) segment 4 (HA) 2828.3 0.000000e+00 1640/1693 (96%) EPI691370 A/ Guangdong /SZ872/2015(H5N6) (A/H5N6) segment 4 (HA) 2826.5 0.000000e+00 1637/1692 (96%) EPI687154 A/Oriental_magpie_robin/Hong_Kong/16759/2015 (A/H5N6) segment 4 (HA) 2826.5 0.000000e+00 1639/1692 (96%) EPI817157 A/muscovy duck/LBM806/2015 (A/H5N6) segment 4 (HA) 2822.8 0.000000e+00 1639/1693 (96%) EPI760116 A/tiger/Yunnan/tig1404/2014 (A/H5N1) segment 4 (HA) 2822.8 0.000000e+00 1639/1693 (96%) EPI703605 A/duck/Eastern China/S0908/2014 (A/H5N6) segment 4 (HA) 2822.8 0.000000e+00 1639/1693 (96%) EPI837306 A/chicken/Hubei/XG18/2015 (A/H5N6) segment 4 (HA) 2821.0 0.000000e+00 1637/1691 (96%) EPI823451 A/duck/Vietnam/LBM813/2015 (A/H5N6) segment 4 (HA) 2819.1 0.000000e+00 1637/1692 (96%) EPI817161 A/muscovy duck/Vietnam/LBM810/2015 (A/H5N6) segment 4 (HA) 2819.1 0.000000e+00 1637/1692 (96%) EPI687704 A/Shenzhen/1/2016 (A/H5N6) segment 4 (HA) 2819.1 0.000000e+00 1635/1688 (96%) EPI817169 A/duck/Vietnam/LBM812/2015 (A/H5N6) segment 4 (HA) 2817.3 0.000000e+00 1638/1693 (96%) EPI817159 A/muscovy duck/Vietnam/LBM809/2015 (A/H5N6) segment 4 (HA) 2817.3 0.000000e+00 1637/1692 (96%) EPI590111 A/chicken/AnNing/6/2014 (A/H5N1) segment 4 (HA) 2817.3 0.000000e+00 1639/1694 (96%) EPI806643 A/duck/Vietnam/LBM808/2015 (A/H5N6) segment 4 (HA) 2811.7 0.000000e+00 1637/1693 (96%) EPI687311 A/chicken/Yunnan/1/2014 (A/H5N1) segment 4 (HA) 2811.7 0.000000e+00 1638/1694 (96%) EPI590110 A/chicken/AnNing/4/2014 (A/H5N1) segment 4 (HA) 2811.7 0.000000e+00 1637/1693 (96%) EPI684557 A/Environment/Shenzhen/2/2015 (A/H5N6) segment 4 (HA) 2809.9 0.000000e+00 1636/1692 (96%) EPI684549 A/Environment/Shenzhen/1/2015 (A/H5N6) segment 4 (HA) 2809.9 0.000000e+00 1636/1692 (96%) EPI682916 A/duck/Wuhan/JXYFB22/2015 (A/H5N6) segment 4 (HA) 2806.2 0.000000e+00 1636/1693 (96%) EPI590897 A/duck/Sichuan/NCXN11/2014 (A/H5N1) segment 4 (HA) 2800.6 0.000000e+00 1635/1693 (96%) EPI590112 A/chicken/DaLi/302/2014 (A/H5N1) segment 4 (HA) 2800.6 0.000000e+00 1636/1694 (96%) EPI823455 A/duck/Vietnam/LBM824/2015 (A/H5N6) segment 4 (HA) 2795.1 0.000000e+00 1633/1692 (96%) EPI590898 A/pigeon/Sichuan/NCXN29/2014 (A/H5N1) segment 4 (HA) 2795.1 0.000000e+00 1634/1693 (96%) EPI691534 A/environment/Yunnan/YN22/2015 (A/H5N6) segment 4 (HA) 2793.3 0.000000e+00 1633/1692 (96%) EPI641394 A/chicken/Yunnan/22/2015 (A/H5N6) segment 4 (HA) 2793.3 0.000000e+00 1633/1692 (96%) EPI817167 A/muscovy duck/Vietnam/LBM823/2015 (A/H5N6) segment 4 (HA) 2789.6 0.000000e+00 1632/1692 (96%) EPI590113 A/chicken/DaLi/502/2014 (A/H5N1) segment 4 (HA) 2789.6 0.000000e+00 1634/1694 (96%) EPI703591 A/duck/Eastern China/L0405/2010 (A/H5N8) segment 4 (HA) 2778.5 0.000000e+00 1632/1694 (96%) EPI687523 A/Chicken/Guangdong/FG594/2015(H5N6) (A/H5N6) segment 4 (HA) 2778.5 0.000000e+00 1630/1692 (96%) EPI590896 A/duck/Sichuan/NCXN10/2014 (A/H5N1) segment 4 (HA) 2778.5 0.000000e+00 1632/1694 (96%) EPI691533 A/environment/Yunnan/YN19/2015 (A/H5N6) segment 4 (HA) 2771.1 0.000000e+00 1628/1691 (96%) EPI641392 A/chicken/Yunnan/19/2015 (A/H5N6) segment 4 (HA) 2771.1 0.000000e+00 1628/1691 (96%) EPI703592 A/duck/Eastern China/L0423/2011 (A/H5N8) segment 4 (HA) 2767.4 0.000000e+00 1630/1694 (96%) EPI703590 A/duck/Eastern China/L0230/2010 (A/H5N2) segment 4 (HA) 2767.4 0.000000e+00 1630/1694 (96%) EPI703589 A/duck/Eastern China/L0321/2010 (A/H5N2) segment 4 (HA) 2767.4 0.000000e+00 1630/1694 (96%) EPI475579 A/wild duck/Shandong/628/2011 (A/H5N1) segment 4 (HA) 2767.4 0.000000e+00 1631/1695 (96%) EPI398966 A/goose/Eastern China/1112/2011 (A/H5N2) segment 4 (HA) 2761.9 0.000000e+00 1629/1694 (96%) EPI593747 A/goose/Shandong/k1201/2009 (A/H5N1) segment 4 (HA) 2750.8 0.000000e+00 1627/1694 (96%) EPI442017 A/duck/Jiangsu/k1203/2010 (A/H5N8) segment 4 (HA) 2750.8 0.000000e+00 1627/1694 (96%) EPI703596 A/duck/Eastern China/L1120/2012 (A/H5N8) segment 4 (HA) 2745.2 0.000000e+00 1626/1694 (95%) EPI703594 A/duck/Eastern China/L0722/2012 (A/H5N8) segment 4 (HA) 2745.2 0.000000e+00 1626/1694 (95%) EPI399960 A/duck/Jiangsu/m234/2012 (A/H5N2) segment 4 (HA) 2741.5 0.000000e+00 1625/1693 (95%) EPI703598 A/goose/Eastern China/L1204/2012 (A/H5N8) segment 4 (HA) 2739.7 0.000000e+00 1625/1694 (95%) EPI703595 A/duck/Eastern China/L1021/2012 (A/H5N8) segment 4 (HA) 2739.7 0.000000e+00 1625/1694 (95%) EPI703593 A/duck/Eastern China/L0611/2011 (A/H5N8) segment 4 (HA) 2739.7 0.000000e+00 1625/1694 (95%) EPI398965 A/duck/Eastern China/1111/2011 (A/H5N2) segment 4 (HA) 2739.7 0.000000e+00 1625/1694 (95%) EPI682917 A/duck/Taizhou/TZYG12/2015 (A/H5N6) segment 4 (HA) 2734.2 0.000000e+00 1623/1693 (95%) EPI431456 A/duck/Hebei/3/2011 (A/H5N2) segment 4 (HA) 2728.6 0.000000e+00 1623/1694 (95%) EPI676397 A/environment/GZ/75/2014 (A/H5N6) segment 4 (HA) 2717.5 0.000000e+00 1620/1693 (95%) EPI672795 A/duck/Guangdong/s14044/2014 (A/H5N8) segment 4 (HA) 2717.5 0.000000e+00 1621/1694 (95%) EPI672787 A/goose/Guangdong/s13124/2013 (A/H5N8) segment 4 (HA) 2717.5 0.000000e+00 1621/1694 (95%) EPI544892 A/duck/Shandong/Q1/2013 (A/H5N8) segment 4 (HA) 2712.0 0.000000e+00 1621/1695 (95%) EPI690800 A/goose/Shandong/WFSG1/2014 (A/H5N8) segment 4 (HA) 2706.5 0.000000e+00 1619/1694 (95%) EPI509698 A/breeder duck/Korea/Gochang1/2014 (A/H5N8) segment 4 (HA) 2706.5 0.000000e+00 1619/1694 (95%) EPI493825 A/duck/Guangdong/wy19/2008 (A/H5N5) segment 4 (HA) 2706.5 0.000000e+00 1621/1696 (95%) EPI591879 A/duck/Jiangxi/23970/2013 (A/H0) segment 4 (HA) 2700.9 0.000000e+00 1618/1694 (95%) EPI703602 A/duck/Eastern China/S0215/2014 (A/H5N8) segment 4 (HA) 2695.4 0.000000e+00 1617/1694 (95%) EPI690792 A/goose/Jiangsu/QD5/2014 (A/H5N8) segment 4 (HA) 2695.4 0.000000e+00 1618/1695 (95%) EPI681300 A/goose/Zhejiang/925104/2014 (A/H5N8) segment 4 (HA) 2695.4 0.000000e+00 1617/1694 (95%) EPI681299 A/goose/Zhejiang/925037/2014 (A/H5N8) segment 4 (HA) 2695.4 0.000000e+00 1617/1694 (95%) EPI561495 A/Baikal teal/Korea/H52/2014 (A/H5N8) segment 4 (HA) 2695.4 0.000000e+00 1618/1695 (95%) EPI530985 A/duck/Zhejiang/W24/2013 (A/H5N8) segment 4 (HA) 2695.4 0.000000e+00 1617/1694 (95%) EPI573197 A/chicken/Korea/H881/2014 (A/H5N8) segment 4 (HA) 2693.5 0.000000e+00 1616/1693 (95%) EPI561612 A/breeder duck/Korea/H158/2014 (A/H5N8) segment 4 (HA) 2693.5 0.000000e+00 1616/1693 (95%) EPI431448 A/duck/Hebei/2/2011 (A/H5N2) segment 4 (HA) 2691.7 0.000000e+00 1616/1694 (95%) EPI762158 A/goose/Eastern China/CZ/2013 (A/H5N8) segment 4 (HA) 2689.8 0.000000e+00 1616/1694 (95%) EPI703607 A/goose/Eastern China/S0408/2014 (A/H5N8) segment 4 (HA) 2689.8 0.000000e+00 1616/1694 (95%) EPI690808 A/goose/Yangzhou/0420/2014 (A/H5N8) segment 4 (HA) 2689.8 0.000000e+00 1617/1695 (95%) EPI583870 A/duck/Shaoxing/5240/2013 (A/H0) segment 4 (HA) 2689.8 0.000000e+00 1616/1694 (95%) EPI585595 A/baikal teal/Korea/2417/2014 (A/H5N8) segment 4 (HA) 2688.0 0.000000e+00 1615/1693 (95%) EPI585589 A/baikal teal/Korea/2399/2014 (A/H5N8) segment 4 (HA) 2688.0 0.000000e+00 1615/1693 (95%) EPI585586 A/baikal teal/Korea/1456/2014 (A/H5N8) segment 4 (HA) 2688.0 0.000000e+00 1615/1693 (95%) EPI573242 A/Common Teal/Korea/H844/2014 (A/H5N8) segment 4 (HA) 2688.0 0.000000e+00 1615/1693 (95%) EPI561646 A/breeder duck/Korea/H249/2014 (A/H5N8) segment 4 (HA) 2688.0 0.000000e+00 1615/1693 (95%) EPI561626 A/mallard/Korea/H207/2014 (A/H5N8) segment 4 (HA) 2688.0 0.000000e+00 1615/1693 (95%) EPI561605 A/broiler duck/Korea/H145/2014 (A/H5N8) segment 4 (HA) 2688.0 0.000000e+00 1615/1693 (95%) EPI561591 A/breeder duck/Korea/H128/2014 (A/H5N8) segment 4 (HA) 2688.0 0.000000e+00 1615/1693 (95%) EPI561529 A/Baikal teal/Korea/H66/2014 (A/H5N8) segment 4 (HA) 2688.0 0.000000e+00 1615/1693 (95%) EPI561508 A/bean goose/Korea/H53/2014 (A/H5N8) segment 4 (HA) 2688.0 0.000000e+00 1615/1693 (95%) EPI561341 A/Baikal teal/Korea/H41/2014 (A/H5N8) segment 4 (HA) 2688.0 0.000000e+00 1615/1693 (95%) EPI703599 A/duck/Eastern China/S1210/2013 (A/H5N8) segment 4 (HA) 2684.3 0.000000e+00 1615/1694 (95%) EPI646105 A/goose/Jiangsu/WX202/2014 (A/H5N8) segment 4 (HA) 2684.3 0.000000e+00 1615/1694 (95%) EPI602037 A/duck/Ningbo/3262/2013 (A/H0) segment 4 (HA) 2684.3 0.000000e+00 1615/1694 (95%) EPI493817 A/duck/Guangdong/wy11/2008 (A/H5N5) segment 4 (HA) 2684.3 0.000000e+00 1617/1696 (95%) EPI585594 A/baikal teal/Korea/2416/2014 (A/H5N8) segment 4 (HA) 2682.5 0.000000e+00 1614/1693 (95%) EPI585592 A/baikal teal/Korea/2406/2014 (A/H5N8) segment 4 (HA) 2682.5 0.000000e+00 1614/1693 (95%) EPI585591 A/baikal teal/Korea/2403/2014 (A/H5N8) segment 4 (HA) 2682.5 0.000000e+00 1614/1693 (95%) EPI585590 A/baikal teal/Korea/2402/2014 (A/H5N8) segment 4 (HA) 2682.5 0.000000e+00 1614/1693 (95%) EPI585582 A/baikal teal/Korea/1448/2014 (A/H5N8) segment 4 (HA) 2682.5 0.000000e+00 1614/1693 (95%) EPI585581 A/baikal teal/Korea/1447/2014 (A/H5N8) segment 4 (HA) 2682.5 0.000000e+00 1614/1693 (95%) EPI585579 A/baikal teal/Korea/1445/2014 (A/H5N8) segment 4 (HA) 2682.5 0.000000e+00 1614/1693 (95%) EPI585577 A/baikal teal/Korea/1437/2014 (A/H5N8) segment 4 (HA) 2682.5 0.000000e+00 1614/1693 (95%) EPI573200 A/Korean native chicken/Korea/H1139/2014 (A/H5N8) segment 4 (HA) 2682.5 0.000000e+00 1614/1693 (95%) EPI573199 A/breeder chicken/Korea/H1068/2014 (A/H5N8) segment 4 (HA) 2682.5 0.000000e+00 1614/1693 (95%) EPI561674 A/bean goose/Korea/H328/2014 (A/H5N8) segment 4 (HA) 2682.5 0.000000e+00 1614/1693 (95%) EPI561577 A/breeder chicken/Korea/H122/2014 (A/H5N8) segment 4 (HA) 2682.5 0.000000e+00 1614/1693 (95%) EPI561570 A/Baikal teal/Korea/H96/2014 (A/H5N8) segment 4 (HA) 2682.5 0.000000e+00 1615/1694 (95%) EPI561563 A/Baikal teal/Korea/H84/2014 (A/H5N8) segment 4 (HA) 2682.5 0.000000e+00 1614/1693 (95%) EPI561542 A/Baikal teal/Korea/H68/2014 (A/H5N8) segment 4 (HA) 2682.5 0.000000e+00 1614/1693 (95%) EPI561522 A/broiler duck/Korea/H65/2014 (A/H5N8) segment 4 (HA) 2682.5 0.000000e+00 1614/1693 (95%) EPI762150 A/duck/Eastern China/JY/2014 (A/H5N8) segment 4 (HA) 2678.8 0.000000e+00 1614/1694 (95%) EPI530986 A/duck/Zhejiang/6D18/2013 (A/H5N8) segment 4 (HA) 2678.8 0.000000e+00 1614/1694 (95%) EPI507673 A/mallard duck/Shanghai/SH-9/2013 (A/H5N8) segment 4 (HA) 2678.8 0.000000e+00 1614/1694 (95%) EPI585593 A/baikal teal/Korea/2414/2014 (A/H5N8) segment 4 (HA) 2676.9 0.000000e+00 1613/1693 (95%) EPI585587 A/baikal teal/Korea/1457/2014 (A/H5N8) segment 4 (HA) 2676.9 0.000000e+00 1613/1693 (95%) EPI585584 A/baikal teal/Korea/1452/2014 (A/H5N8) segment 4 (HA) 2676.9 0.000000e+00 1613/1693 (95%) EPI585583 A/baikal teal/Korea/1449/2014 (A/H5N8) segment 4 (HA) 2676.9 0.000000e+00 1613/1693 (95%) EPI561705 A/bean goose/Korea/H40/2014 (A/H5N8) segment 4 (HA) 2676.9 0.000000e+00 1613/1693 (95%) EPI561667 A/mallard/Korea/H297/2014 (A/H5N8) segment 4 (HA) 2676.9 0.000000e+00 1613/1693 (95%) EPI561653 A/breeder chicken/Korea/H250/2014 (A/H5N8) segment 4 (HA) 2676.9 0.000000e+00 1613/1693 (95%) EPI561633 A/white-fronted goose/Korea/H231/2014 (A/H5N8) segment 4 (HA) 2676.9 0.000000e+00 1613/1693 (95%) EPI509709 A/baikal teal/Korea/Donglim3/2014 (A/H5N8) segment 4 (HA) 2676.9 0.000000e+00 1613/1693 (95%) EPI509704 A/broiler duck/Korea/Buan2/2014 (A/H5N8) segment 4 (HA) 2676.9 0.000000e+00 1613/1693 (95%) EPI681290 A/goose/Zhejiang/925106/2014 (A/H5N6) segment 4 (HA) 2673.2 0.000000e+00 1613/1694 (95%) EPI681280 A/goose/Zhejiang/77166/2014 (A/H5N2) segment 4 (HA) 2673.2 0.000000e+00 1614/1695 (95%) EPI499478 A/chicken/China/AH/2012 (A/H5N1) segment 4 (HA) 2673.2 0.000000e+00 1613/1694 (95%) EPI585585 A/baikal teal/Korea/1454/2014 (A/H5N8) segment 4 (HA) 2671.4 0.000000e+00 1612/1693 (95%) EPI585580 A/baikal teal/Korea/1446/2014 (A/H5N8) segment 4 (HA) 2671.4 0.000000e+00 1612/1693 (95%) EPI585578 A/baikal teal/Korea/1441/2014 (A/H5N8) segment 4 (HA) 2671.4 0.000000e+00 1612/1693 (95%) EPI573208 A/gadwall/Korea/H1351/2014 (A/H5N8) segment 4 (HA) 2671.4 0.000000e+00 1612/1693 (95%) EPI573196 A/broiler duck/Korea/H651/2014 (A/H5N8) segment 4 (HA) 2671.4 0.000000e+00 1612/1693 (95%) EPI573194 A/breeder chicken/Korea/H818/2014 (A/H5N8) segment 4 (HA) 2671.4 0.000000e+00 1612/1693 (95%) EPI561697 A/spot-billed duck/Korea/H455-42/2014 (A/H5N8) segment 4 (HA) 2671.4 0.000000e+00 1612/1693 (95%) EPI561681 A/tundra swan/Korea/H411/2014 (A/H5N8) segment 4 (HA) 2671.4 0.000000e+00 1612/1693 (95%) EPI561660 A/Korean native chicken/Korea/H257/2014 (A/H5N8) segment 4 (HA) 2671.4 0.000000e+00 1612/1693 (95%) EPI561598 A/broiler duck/Korea/H133/2014 (A/H5N8) segment 4 (HA) 2671.4 0.000000e+00 1612/1693 (95%) EPI561515 A/Baikal teal/Korea/H62/2014 (A/H5N8) segment 4 (HA) 2671.4 0.000000e+00 1612/1693 (95%) EPI561360 A/broiler duck/Korea/H49/2014 (A/H5N8) segment 4 (HA) 2671.4 0.000000e+00 1612/1693 (95%) EPI561348 A/broiler duck/Korea/H47/2014 (A/H5N8) segment 4 (HA) 2671.4 0.000000e+00 1612/1693 (95%) EPI561336 A/broiler duck/Korea/H48/2014 (A/H5N8) segment 4 (HA) 2671.4 0.000000e+00 1612/1693 (95%) EPI561204 A/broiler duck/Korea/H31/2014 (A/H5N8) segment 4 (HA) 2671.4 0.000000e+00 1612/1693 (95%) EPI561196 A/broiler duck/Korea/H29/2014 (A/H5N8) segment 4 (HA) 2671.4 0.000000e+00 1612/1693 (95%) EPI561187 A/waterfowl/Korea/S005/2014 (A/H5N8) segment 4 (HA) 2671.4 0.000000e+00 1612/1693 (95%) EPI517161 A/Chicken/Kumamoto/1-7/2014 (A/H5N8) segment 4 (HA) 2671.4 0.000000e+00 1612/1693 (95%) EPI681298 A/duck/Zhejiang/925169/2014 (A/H5N8) segment 4 (HA) 2667.7 0.000000e+00 1612/1694 (95%) EPI585588 A/baikal teal/Korea/1458/2014 (A/H5N8) segment 4 (HA) 2665.8 0.000000e+00 1611/1693 (95%) EPI573207 A/chicken/Korea/H1350/2014 (A/H5N8) segment 4 (HA) 2665.8 0.000000e+00 1611/1693 (95%) EPI573201 A/chicken/Korea/H1236/2014 (A/H5N8) segment 4 (HA) 2665.8 0.000000e+00 1611/1693 (95%) EPI573192 A/breeder chicken/Korea/H503/2014 (A/H5N8) segment 4 (HA) 2665.8 0.000000e+00 1611/1693 (95%) EPI561690 A/common teal/Korea/H455-30/2014 (A/H5N8) segment 4 (HA) 2665.8 0.000000e+00 1611/1693 (95%) EPI561556 A/Coot/Korea/H81/2014 (A/H5N8) segment 4 (HA) 2665.8 0.000000e+00 1611/1693 (95%) EPI561549 A/Baikal teal/Korea/H80/2014 (A/H5N8) segment 4 (HA) 2665.8 0.000000e+00 1611/1693 (95%) EPI542628 A/mallard/Korea/W452/2014 (A/H5N8) segment 4 (HA) 2665.8 0.000000e+00 1611/1693 (95%) EPI328878 A/duck/Eastern China/031/2009 (A/H5N5) segment 4 (HA) 2662.1 0.000000e+00 1613/1696 (95%) EPI703601 A/duck/Eastern China/S0131/2014 (A/H5N2) segment 4 (HA) 2660.3 0.000000e+00 1611/1694 (95%) EPI573240 A/breeder duck/Korea/H345/2014 (A/H5N8) segment 4 (HA) 2660.3 0.000000e+00 1610/1693 (95%) EPI573203 A/chicken/Korea/H1292/2014 (A/H5N8) segment 4 (HA) 2660.3 0.000000e+00 1611/1694 (95%) EPI573202 A/chicken/Korea/H1268/2014 (A/H5N8) segment 4 (HA) 2660.3 0.000000e+00 1610/1693 (95%) EPI573195 A/breeder chicken/Korea/H818/2014 (A/H5N8) segment 4 (HA) 2660.3 0.000000e+00 1610/1693 (95%) EPI682915 A/duck/Wenzhou/YHQL22/2014 (A/H5N6) segment 4 (HA) 2656.6 0.000000e+00 1610/1694 (95%) EPI681297 A/duck/Zhejiang/925019/2014 (A/H5N8) segment 4 (HA) 2656.6 0.000000e+00 1610/1694 (95%) EPI718280 A/ostrich/Korea/H829/2014 (A/H5N8) segment 4 (HA) 2654.8 0.000000e+00 1609/1693 (95%) EPI561619 A/breeder duck/Korea/H200/2014 (A/H5N8) segment 4 (HA) 2654.8 0.000000e+00 1609/1693 (95%) EPI703604 A/duck/Eastern China/S0808/2014 (A/H5N2) segment 4 (HA) 2651.1 0.000000e+00 1610/1695 (94%) EPI573241 A/breeder duck/Korea/H566/2014 (A/H5N8) segment 4 (HA) 2649.2 0.000000e+00 1608/1693 (94%) EPI573204 A/goose/Korea/H1296/2014 (A/H5N8) segment 4 (HA) 2649.2 0.000000e+00 1608/1693 (94%) EPI687531 A/Enviroment/Guangdong/SS127/2013(H5N6) (A/H5N6) segment 4 (HA) 2645.5 0.000000e+00 1608/1694 (94%) EPI573205 A/Korean native chicken/Korea/H1299/2014 (A/H5N8) segment 4 (HA) 2643.7 0.000000e+00 1607/1693 (94%) EPI573198 A/broiler duck/Korea/H959/2014 (A/H5N8) segment 4 (HA) 2643.7 0.000000e+00 1607/1693 (94%) EPI703608 A/duck/Eastern China/S1109/2014 (A/H5N8) segment 4 (HA) 2640.0 0.000000e+00 1607/1694 (94%) EPI573220 A/goose/Korea/H1698/2014 (A/H5N8) segment 4 (HA) 2638.1 0.000000e+00 1606/1693 (94%) EPI573218 A/Korean native chicken/Korea/H1687/2014 (A/H5N8) segment 4 (HA) 2638.1 0.000000e+00 1606/1693 (94%) EPI573217 A/broiler duck/Korea/H1685/2014 (A/H5N8) segment 4 (HA) 2638.1 0.000000e+00 1606/1693 (94%) EPI573216 A/broiler duck/Korea/H1683/2014 (A/H5N8) segment 4 (HA) 2638.1 0.000000e+00 1606/1693 (94%) EPI573214 A/broiler duck/Korea/H1582/2014 (A/H5N8) segment 4 (HA) 2638.1 0.000000e+00 1606/1693 (94%) EPI573212 A/Korean native chicken/Korea/H1554/2014 (A/H5N8) segment 4 (HA) 2638.1 0.000000e+00 1607/1694 (94%) EPI573211 A/goose/Korea/H1545/2014 (A/H5N8) segment 4 (HA) 2638.1 0.000000e+00 1607/1694 (94%) EPI573210 A/broiler duck/Korea/H1414/2014 (A/H5N8) segment 4 (HA) 2638.1 0.000000e+00 1606/1693 (94%) EPI573209 A/broiler duck/Korea/H1413/2014 (A/H5N8) segment 4 (HA) 2638.1 0.000000e+00 1606/1693 (94%) EPI573206 A/breeder duck/Korea/H1343/2014 (A/H5N8) segment 4 (HA) 2638.1 0.000000e+00 1606/1693 (94%) EPI550849 A/duck/England/36226/14 (A/H5N8) segment 4 (HA) 2638.1 0.000000e+00 1606/1693 (94%) EPI550848 A/duck/England/36038/14 (A/H5N8) segment 4 (HA) 2638.1 0.000000e+00 1606/1693 (94%) EPI643147 A/Environment/Guangdong/GZ55/2013(H5N8) (A/H5N8) segment 4 (HA) 2636.3 0.000000e+00 1602/1695 (94%) EPI774926 A/duck/Zhejiang/6DK19/2013 (A/H5N2) segment 4 (HA) 2634.4 0.000000e+00 1606/1694 (94%) EPI837543 A/broiler duck/Korea/H2116/2015 (A/H5N8) segment 4 (HA) 2632.6 0.000000e+00 1605/1693 (94%) EPI750162 A/goose/Taiwan/01023/2015 (A/H5N2) segment 4 (HA) 2632.6 0.000000e+00 1606/1694 (94%) EPI750106 A/chicken/Taiwan/01174/2015 (A/H5N3) segment 4 (HA) 2632.6 0.000000e+00 1606/1694 (94%) EPI750098 A/goose/Taiwan/01038/2015 (A/H5N3) segment 4 (HA) 2632.6 0.000000e+00 1606/1694 (94%) EPI690776 A/goose/Taiwan/TNO19/2015 (A/H5N8) segment 4 (HA) 2632.6 0.000000e+00 1606/1694 (94%) EPI690768 A/goose/Taiwan/TNO18/2015 (A/H5N8) segment 4 (HA) 2632.6 0.000000e+00 1606/1694 (94%) EPI690760 A/goose/Taiwan/TNO17/2015 (A/H5N8) segment 4 (HA) 2632.6 0.000000e+00 1606/1694 (94%) EPI690728 A/goose/Taiwan/TNO13/2015 (A/H5N8) segment 4 (HA) 2632.6 0.000000e+00 1606/1694 (94%) EPI690720 A/goose/Taiwan/TNO12/2015 (A/H5N8) segment 4 (HA) 2632.6 0.000000e+00 1606/1694 (94%) EPI690712 A/goose/Taiwan/TNO11/2015 (A/H5N8) segment 4 (HA) 2632.6 0.000000e+00 1606/1694 (94%) EPI690688 A/goose/Taiwan/TNO8/2015 (A/H5N8) segment 4 (HA) 2632.6 0.000000e+00 1606/1694 (94%) EPI690632 A/goose/Taiwan/TNO1/2015 (A/H5N8) segment 4 (HA) 2632.6 0.000000e+00 1606/1694 (94%) EPI690624 A/goose/Taiwan/TNC14/2015 (A/H5N8) segment 4 (HA) 2632.6 0.000000e+00 1606/1694 (94%) EPI690608 A/goose/Taiwan/TNC12/2015 (A/H5N8) segment 4 (HA) 2632.6 0.000000e+00 1606/1694 (94%) EPI690592 A/goose/Taiwan/TNC10/2015 (A/H5N8) segment 4 (HA) 2632.6 0.000000e+00 1606/1694 (94%) EPI690576 A/goose/Taiwan/TNC8/2015 (A/H5N8) segment 4 (HA) 2632.6 0.000000e+00 1606/1694 (94%) EPI690568 A/goose/Taiwan/TNC7/2015 (A/H5N8) segment 4 (HA) 2632.6 0.000000e+00 1606/1694 (94%) EPI690560 A/goose/Taiwan/TNC6/2015 (A/H5N8) segment 4 (HA) 2632.6 0.000000e+00 1606/1694 (94%) EPI690528 A/goose/Taiwan/TNC2/2015 (A/H5N8) segment 4 (HA) 2632.6 0.000000e+00 1606/1694 (94%) EPI690461 A/Cooper's hawk/Minnesota/198225/2015 (A/H5N2) segment 4 (HA) 2632.6 0.000000e+00 1606/1694 (94%) EPI588968 A/chicken/Taiwan/a174/2015 (A/H5N3) segment 4 (HA) 2632.6 0.000000e+00 1606/1694 (94%) EPI573638 A/crane/Kagoshima/KU13/2014(H5N8) (A/H5N8) segment 4 (HA) 2632.6 0.000000e+00 1606/1694 (94%) EPI573219 A/goose/Korea/H1689/2014 (A/H5N8) segment 4 (HA) 2632.6 0.000000e+00 1605/1693 (94%) EPI573213 A/broiler duck/Korea/H1556/2014 (A/H5N8) segment 4 (HA) 2632.6 0.000000e+00 1605/1693 (94%) EPI553349 A/wigeon/Sakha/1/2014 (A/H5N8) segment 4 (HA) 2632.6 0.000000e+00 1605/1693 (94%) EPI841787 A/duck/Zhejiang/6DK19-MA/2013 (A/H5N2) segment 4 (HA) 2628.9 0.000000e+00 1605/1694 (94%) EPI691836 A/gull Germany-NI/R45/2015 (A/H5N8) segment 4 (HA) 2628.9 0.000000e+00 1604/1693 (94%) EPI624535 A/scarlet_ibis/Germany/AR44-L01279/2015 (A/H5N8) segment 4 (HA) 2628.9 0.000000e+00 1603/1691 (94%) EPI602094 A/chicken/Shenzhen/712/2013 (A/H0) segment 4 (HA) 2628.9 0.000000e+00 1605/1694 (94%) EPI590895 A/environment/Sichuan/NCLL1/2014 (A/H5N6) segment 4 (HA) 2628.9 0.000000e+00 1605/1694 (94%) EPI569711 A/duck/Zhejiang/6D2/2013 (A/H5N6) segment 4 (HA) 2628.9 0.000000e+00 1605/1694 (94%) EPI569710 A/chicken/Zhejiang/6C2/2013 (A/H5N6) segment 4 (HA) 2628.9 0.000000e+00 1605/1694 (94%) EPI555126 A/stork/Germany-MV/R24/2015 (A/H5N8) segment 4 (HA) 2628.9 0.000000e+00 1603/1691 (94%) EPI837562 A/broiler duck/Korea/H2606/2015 (A/H5N8) segment 4 (HA) 2627.1 0.000000e+00 1604/1693 (94%) EPI750170 A/goose/Taiwan/01031/2015 (A/H5N2) segment 4 (HA) 2627.1 0.000000e+00 1605/1694 (94%) EPI750146 A/duck/Taiwan/01006/2015 (A/H5N2) segment 4 (HA) 2627.1 0.000000e+00 1604/1693 (94%) EPI750130 A/goose/Taiwan/01026/2015 (A/H5N8) segment 4 (HA) 2627.1 0.000000e+00 1605/1694 (94%) EPI690736 A/goose/Taiwan/TNO14/2015 (A/H5N8) segment 4 (HA) 2627.1 0.000000e+00 1605/1694 (94%) EPI690704 A/goose/Taiwan/TNO10/2015 (A/H5N8) segment 4 (HA) 2627.1 0.000000e+00 1605/1694 (94%) EPI690680 A/goose/Taiwan/TNO7/2015 (A/H5N8) segment 4 (HA) 2627.1 0.000000e+00 1605/1694 (94%) EPI690648 A/goose/Taiwan/TNO3/2015 (A/H5N8) segment 4 (HA) 2627.1 0.000000e+00 1605/1694 (94%) EPI690616 A/goose/Taiwan/TNC13/2015 (A/H5N8) segment 4 (HA) 2627.1 0.000000e+00 1605/1694 (94%) EPI690584 A/goose/Taiwan/TNC9/2015 (A/H5N8) segment 4 (HA) 2627.1 0.000000e+00 1605/1694 (94%) EPI690536 A/goose/Taiwan/TNC3/2015 (A/H5N8) segment 4 (HA) 2627.1 0.000000e+00 1605/1694 (94%) EPI690520 A/goose/Taiwan/TNC1/2015 (A/H5N8) segment 4 (HA) 2627.1 0.000000e+00 1605/1694 (94%) EPI690420 A/American wigeon/Washington/195205/2014 (A/H5N8) segment 4 (HA) 2627.1 0.000000e+00 1605/1694 (94%) EPI690413 A/American wigeon/Washington/195198/2014 (A/H5N8) segment 4 (HA) 2627.1 0.000000e+00 1605/1694 (94%) EPI662744 A/chicken/Wisconsin/15-012160-1/2015 (A/H5N2) segment 4 (HA) 2627.1 0.000000e+00 1605/1694 (94%) EPI662723 A/turkey/South Dakota/15-010371/2015 (A/H5N2) segment 4 (HA) 2627.1 0.000000e+00 1605/1694 (94%) EPI662688 A/turkey/North Dakota/15-011420-13/2015 (A/H5N2) segment 4 (HA) 2627.1 0.000000e+00 1605/1694 (94%) EPI590740 A/turkey/Minnesota/9845-4/2015 (A/H5N2) segment 4 (HA) 2627.1 0.000000e+00 1605/1694 (94%) EPI590712 A/turkey/Minnesota/7172-1/2015 (A/H5N2) segment 4 (HA) 2627.1 0.000000e+00 1605/1694 (94%) EPI573271 A/chicken/Washington/61-9/2014 (A/H5N2) segment 4 (HA) 2627.1 0.000000e+00 1605/1694 (94%) EPI573235 A/Korean native chicken/Korea/H1903/2014 (A/H5N8) segment 4 (HA) 2627.1 0.000000e+00 1604/1693 (94%) EPI573233 A/Korean native chicken/Korea/H1847/2014 (A/H5N8) segment 4 (HA) 2627.1 0.000000e+00 1604/1693 (94%) EPI573228 A/broiler duck/Korea/H1755/2014 (A/H5N8) segment 4 (HA) 2627.1 0.000000e+00 1604/1693 (94%) EPI573227 A/breeder duck/Korea/H1752/2014 (A/H5N8) segment 4 (HA) 2627.1 0.000000e+00 1604/1693 (94%) EPI573222 A/broiler duck/Korea/H1733/2014 (A/H5N8) segment 4 (HA) 2627.1 0.000000e+00 1604/1693 (94%) EPI573215 A/breeder duck/Korea/H1596/2014 (A/H5N8) segment 4 (HA) 2627.1 0.000000e+00 1604/1693 (94%) EPI569390 A/gyrfalcon/Washington/41088-6/2014 (A/H5N8) segment 4 (HA) 2627.1 0.000000e+00 1605/1694 (94%) EPI569376 A/guinea fowl/Oregon/41613-1/2014 (A/H5N8) segment 4 (HA) 2627.1 0.000000e+00 1605/1694 (94%) EPI569372 A/chicken/Oregon/41613-2/2014 (A/H5N8) segment 4 (HA) 2627.1 0.000000e+00 1605/1694 (94%) EPI548493 A/duck/Chiba/26-372-61/2014 (A/H5N8) segment 4 (HA) 2627.1 0.000000e+00 1604/1693 (94%) EPI548485 A/duck/Chiba/26-372-48/2014 (A/H5N8) segment 4 (HA) 2627.1 0.000000e+00 1604/1693 (94%) EPI547673 A/duck/England/36254/14 (A/H5N8) segment 4 (HA) 2627.1 0.000000e+00 1604/1693 (94%) EPI837629 A/migratory waterfowl/Hubei/Chenhu1306/2014 (A/H5N6) segment 4 (HA) 2623.4 0.000000e+00 1604/1694 (94%) EPI681281 A/goose/Zhejiang/77167/2014 (A/H5N2) segment 4 (HA) 2623.4 0.000000e+00 1604/1694 (94%) EPI590891 A/duck/Sichuan/NCJPL7/2014 (A/H5N6) segment 4 (HA) 2623.4 0.000000e+00 1604/1694 (94%) EPI586534 A/chicken/BC/FAV22/2014 (A/H5N2) segment 4 (HA) 2623.4 0.000000e+00 1604/1694 (94%) EPI576384 A/MuteSwan/Sweden/SVA-U1503110277-SZ502/2015 (A/H5N8) segment 4 (HA) 2623.4 0.000000e+00 1605/1695 (94%) EPI573179 A/duck/Netherlands/14015898/2014 (A/H5N8) segment 4 (HA) 2623.4 0.000000e+00 1604/1694 (94%) EPI837568 A/broiler duck/Korea/H2649/2015 (A/H5N8) segment 4 (HA) 2621.5 0.000000e+00 1604/1694 (94%) EPI837567 A/broiler duck/Korea/H2641/2015 (A/H5N8) segment 4 (HA) 2621.5 0.000000e+00 1604/1694 (94%) EPI837566 A/broildr duck/Korea/H2637/2015 (A/H5N8) segment 4 (HA) 2621.5 0.000000e+00 1604/1694 (94%) EPI837563 A/broiler duck/Korea/H2618/2015 (A/H5N8) segment 4 (HA) 2621.5 0.000000e+00 1604/1694 (94%) EPI837547 A/wild bird/Korea/H2290/2015 (A/H5N8) segment 4 (HA) 2621.5 0.000000e+00 1603/1693 (94%) EPI837545 A/broiler duck/Korea/H2266/2015 (A/H5N8) segment 4 (HA) 2621.5 0.000000e+00 1603/1693 (94%) EPI837544 A/broiler duck/Korea/H2194/2015 (A/H5N8) segment 4 (HA) 2621.5 0.000000e+00 1603/1693 (94%) EPI837542 A/mallard/Korea/H2102/2015 (A/H5N8) segment 4 (HA) 2621.5 0.000000e+00 1603/1693 (94%) EPI837541 A/breeder duck/Korea/H2086/2015 (A/H5N8) segment 4 (HA) 2621.5 0.000000e+00 1603/1693 (94%) EPI778498 A/turkey/Minnesota/15-012582-1/2015 (A/H5N2) segment 4 (HA) 2621.5 0.000000e+00 1604/1694 (94%) EPI778490 A/turkey/South Dakota/15-012511-2/2015 (A/H5N2) segment 4 (HA) 2621.5 0.000000e+00 1604/1694 (94%) EPI750178 A/goose/Taiwan/01040/2015 (A/H5N2) segment 4 (HA) 2621.5 0.000000e+00 1604/1694 (94%) EPI750154 A/goose/Taiwan/01022/2015 (A/H5N2) segment 4 (HA) 2621.5 0.000000e+00 1604/1694 (94%) EPI750138 A/goose/Taiwan/01039/2015 (A/H5N8) segment 4 (HA) 2621.5 0.000000e+00 1604/1694 (94%) EPI690363 A/mallard/Washington/196262/2015 (A/H5N2) segment 4 (HA) 2621.5 0.000000e+00 1604/1694 (94%) EPI690336 A/bald eagle/Idaho/15-002892-2/2015 (A/H5N8) segment 4 (HA) 2621.5 0.000000e+00 1604/1694 (94%) EPI690329 A/mallard/Oregon/AH0003821/2014 (A/H5N2) segment 4 (HA) 2621.5 0.000000e+00 1604/1694 (94%) EPI690322 A/mallard/Idaho/AH0005955/2014 (A/H5N8) segment 4 (HA) 2621.5 0.000000e+00 1604/1694 (94%) EPI690276 A/mallard/Nevada/AH0006855/2015 (A/H5N8) segment 4 (HA) 2621.5 0.000000e+00 1604/1694 (94%) EPI690255 A/American green-winged teal/Oregon/AH0012403/2015 (A/H5N2) segment 4 (HA) 2621.5 0.000000e+00 1604/1694 (94%) EPI690248 A/American green-winged teal/Idaho/AH0011899/2015 (A/H5N2) segment 4 (HA) 2621.5 0.000000e+00 1604/1694 (94%) EPI690194 A/mallard/Idaho/AH0008597/2015 (A/H5N8) segment 4 (HA) 2621.5 0.000000e+00 1604/1694 (94%) EPI690180 A/Northern shoveler/Oregon/AH0007337/2015 (A/H5N2) segment 4 (HA) 2621.5 0.000000e+00 1604/1694 (94%) EPI690159 A/wood duck/Oregon/AH0007257/2015 (A/H5N2) segment 4 (HA) 2621.5 0.000000e+00 1604/1694 (94%) EPI690152 A/wood duck/Oregon/AH0007244/2015 (A/H5N2) segment 4 (HA) 2621.5 0.000000e+00 1604/1694 (94%) EPI690145 A/Northern pintail/Oregon/AH0003967/2015 (A/H5N2) segment 4 (HA) 2621.5 0.000000e+00 1604/1694 (94%) EPI690131 A/American wigeon/Utah/AH0007824/2015 (A/H5N8) segment 4 (HA) 2621.5 0.000000e+00 1604/1694 (94%) EPI690124 A/snow goose/Missouri/15-011246-1/2015 (A/H5N2) segment 4 (HA) 2621.5 0.000000e+00 1604/1694 (94%) EPI690121 A/Northern shoveler/Oregon/AH0007339/2015 (A/H5N2) segment 4 (HA) 2621.5 0.000000e+00 1603/1693 (94%) EPI662737 A/chicken/Wisconsin/15-011595-1/2015 (A/H5N2) segment 4 (HA) 2621.5 0.000000e+00 1604/1694 (94%) EPI662701 A/turkey/Wisconsin/15-012012-2/2015 (A/H5N2) segment 4 (HA) 2621.5 0.000000e+00 1605/1695 (94%) EPI662648 A/chicken/Miyazaki/2-4/2014 (A/H5N8) segment 4 (HA) 2621.5 0.000000e+00 1603/1693 (94%) EPI662632 A/chicken/Okayama/1-2/2015 (A/H5N8) segment 4 (HA) 2621.5 0.000000e+00 1603/1693 (94%) EPI620408 A/turkey/Iowa/11762-1/2015 (A/H5N2) segment 4 (HA) 2621.5 0.000000e+00 1604/1694 (94%) EPI595055 A/common teal/Korea/KU-12/2015 (A/H5N8) segment 4 (HA) 2621.5 0.000000e+00 1603/1693 (94%) EPI590726 A/turkey/Arkansas/7791-1/2015 (A/H5N2) segment 4 (HA) 2621.5 0.000000e+00 1604/1694 (94%) EPI587633 A/chicken/Iowa/04-20/2015 (A/H5N2) segment 4 (HA) 2621.5 0.000000e+00 1604/1694 (94%) EPI586550 A/chicken/BC/FAV24/2014 (A/H5N2) segment 4 (HA) 2621.5 0.000000e+00 1604/1694 (94%) EPI586518 A/chicken/BC/FAV20/2014 (A/H5N2) segment 4 (HA) 2621.5 0.000000e+00 1604/1694 (94%) EPI586509 A/poultry/BC/FAV19/2014 (A/H5N2) segment 4 (HA) 2621.5 0.000000e+00 1604/1694 (94%) EPI584079 A/turkey/BC/FAV14/2014 (A/H5N2) segment 4 (HA) 2621.5 0.000000e+00 1604/1694 (94%) EPI576477 A/chicken/BC/FAV9/2014 (A/H5N2) segment 4 (HA) 2621.5 0.000000e+00 1604/1694 (94%) EPI576391 A/MuteSwan/Sweden/SVA-1503130141-SZ543/2015 (A/H5N8) segment 4 (HA) 2621.5 0.000000e+00 1605/1695 (94%) EPI573654 A/crane/Kagoshima/KU41/2014(H5N8) (A/H5N8) segment 4 (HA) 2621.5 0.000000e+00 1603/1693 (94%) EPI573646 A/crane/Kagoshima/KU21/2014(H5N8) (A/H5N8) segment 4 (HA) 2621.5 0.000000e+00 1603/1693 (94%) EPI573298 A/turkey/BC/FAV10/2014 (A/H5N2) segment 4 (HA) 2621.5 0.000000e+00 1604/1694 (94%) EPI573281 A/turkey/Washington/61-22/2014 (A/H5N2) segment 4 (HA) 2621.5 0.000000e+00 1604/1694 (94%) EPI573276 A/domestic duck/Washington/61-16/2014 (A/H5N2) segment 4 (HA) 2621.5 0.000000e+00 1604/1694 (94%) EPI573239 A/mallard/Korea/H1924-6/2014 (A/H5N8) segment 4 (HA) 2621.5 0.000000e+00 1603/1693 (94%) EPI573229 A/broiler duck/Korea/H1763/2014 (A/H5N8) segment 4 (HA) 2621.5 0.000000e+00 1603/1693 (94%) EPI573226 A/Korean native chicken/Korea/H1747/2014 (A/H5N8) segment 4 (HA) 2621.5 0.000000e+00 1603/1693 (94%) EPI573224 A/broiler duck/Korea/H1739/2014 (A/H5N8) segment 4 (HA) 2621.5 0.000000e+00 1603/1693 (94%) EPI569383 A/Northern pintail/Washington/40964/2014 (A/H5N2) segment 4 (HA) 2621.5 0.000000e+00 1604/1694 (94%) EPI493833 A/duck/Guangdong/wy24/2008 (A/H5N5) segment 4 (HA) 2621.5 0.000000e+00 1609/1700 (94%) EPI837636 A/migratory waterfowl/Hubei/Chenhu1347/2014 (A/H5N6) segment 4 (HA) 2617.8 0.000000e+00 1603/1694 (94%) EPI687506 A/Duck/Guangdong/PY501/2014(H5N6) (A/H5N6) segment 4 (HA) 2617.8 0.000000e+00 1604/1695 (94%) EPI681282 A/goose/Zhejiang/77168/2014 (A/H5N2) segment 4 (HA) 2617.8 0.000000e+00 1603/1694 (94%) EPI681278 A/duck/Zhejiang/77138/2014 (A/H5N2) segment 4 (HA) 2617.8 0.000000e+00 1603/1694 (94%) EPI602113 A/environment/Jiangxi/10170/2014 (A/H5N6) segment 4 (HA) 2617.8 0.000000e+00 1603/1694 (94%) EPI601997 A/black chicken/Jiangxi/10139/2014 (A/H0) segment 4 (HA) 2617.8 0.000000e+00 1603/1694 (94%) EPI599369 A/environment/Jiangxi/10171/2014 (A/H5N6) segment 4 (HA) 2617.8 0.000000e+00 1603/1694 (94%) EPI599360 A/environment/Jiangxi/10164/2014 (A/H5N6) segment 4 (HA) 2617.8 0.000000e+00 1603/1694 (94%) EPI599353 A/duck/Jiangxi/10160/2014 (A/H5N6) segment 4 (HA) 2617.8 0.000000e+00 1603/1694 (94%) EPI590889 A/Anas_crecca/Hubei/Chenhu1623-5/2014 (A/H5N6) segment 4 (HA) 2617.8 0.000000e+00 1603/1694 (94%) EPI585724 A/cat/Sichuan/SC18/2014 (A/H5N6) segment 4 (HA) 2617.8 0.000000e+00 1603/1694 (94%) EPI573171 A/Chicken/Netherlands/14015824/2014 (A/H5N8) segment 4 (HA) 2617.8 0.000000e+00 1603/1694 (94%) EPI533583 A/Sichuan/26221/2014 (A/H5N6) segment 4 (HA) 2617.8 0.000000e+00 1603/1694 (94%) EPI328870 A/duck/Eastern China/008/2008 (A/H5N5) segment 4 (HA) 2617.8 0.000000e+00 1606/1697 (94%) EPI845956 A/tundra swan/Tottori/C6nk/2014 (A/H5N8) segment 4 (HA) 2616.0 0.000000e+00 1603/1694 (94%) EPI845903 A/mandarin duck/Gifu/2112D001/2014 (A/H5N8) segment 4 (HA) 2616.0 0.000000e+00 1602/1693 (94%) EPI837557 A/broiler duck/Korea/H2531/2015 (A/H5N8) segment 4 (HA) 2616.0 0.000000e+00 1602/1693 (94%) EPI837553 A/broiler duck/Korea/H2400/2015 (A/H5N8) segment 4 (HA) 2616.0 0.000000e+00 1602/1693 (94%) EPI837548 A/wild bird/Korea/H2291/2015 (A/H5N8) segment 4 (HA) 2616.0 0.000000e+00 1602/1693 (94%) EPI690468 A/snowy owl/Wisconsin/198399/2015 (A/H5N2) segment 4 (HA) 2616.0 0.000000e+00 1603/1694 (94%) EPI690385 A/mallard/Washington/196865/2015 (A/H5N2) segment 4 (HA) 2616.0 0.000000e+00 1603/1694 (94%) EPI690350 A/mallard/Oregon/195547/2014 (A/H5N2) segment 4 (HA) 2616.0 0.000000e+00 1603/1694 (94%) EPI690343 A/Northern pintail/Washington/195365/2014 (A/H5N2) segment 4 (HA) 2616.0 0.000000e+00 1603/1694 (94%) EPI690241 A/mallard/Idaho/AH0007413/2015 (A/H5N2) segment 4 (HA) 2616.0 0.000000e+00 1603/1694 (94%) EPI690234 A/mallard/Idaho/AH0007412/2015 (A/H5N2) segment 4 (HA) 2616.0 0.000000e+00 1603/1694 (94%) EPI690219 A/Northern pintail/Oregon/AH0003871/2015 (A/H5N2) segment 4 (HA) 2616.0 0.000000e+00 1603/1694 (94%) EPI690212 A/mallard/Oregon/AH0008887/2015 (A/H5N2) segment 4 (HA) 2616.0 0.000000e+00 1603/1694 (94%) EPI690173 A/Northern shoveler/Oregon/AH0007332/2015 (A/H5N2) segment 4 (HA) 2616.0 0.000000e+00 1603/1694 (94%) EPI690166 A/wood duck/Oregon/AH0007263/2015 (A/H5N2) segment 4 (HA) 2616.0 0.000000e+00 1604/1695 (94%) EPI687239 A/turkey/Germany/AR3390-L00939/2014 (A/H5N8) segment 4 (HA) 2616.0 0.000000e+00 1602/1693 (94%) EPI662709 A/turkey/North Dakota/15-013049-1/2015 (A/H5N2) segment 4 (HA) 2616.0 0.000000e+00 1603/1694 (94%) EPI590733 A/chicken/Kansas/8395-3/2015 (A/H5N2) segment 4 (HA) 2616.0 0.000000e+00 1603/1694 (94%) EPI590719 A/turkey/Missouri/7458-1/2015 (A/H5N2) segment 4 (HA) 2616.0 0.000000e+00 1603/1694 (94%) EPI590692 A/chicken/Washington/3490-18/2015 (A/H5N2) segment 4 (HA) 2616.0 0.000000e+00 1603/1694 (94%) EPI590685 A/turkey/Minnesota/9892-2/2015 (A/H5N2) segment 4 (HA) 2616.0 0.000000e+00 1603/1694 (94%) EPI588976 A/duck/Taiwan/a068/2015 (A/H5N8) segment 4 (HA) 2616.0 0.000000e+00 1604/1695 (94%) EPI588960 A/duck/Taiwan/a043/2015 (A/H5N2) segment 4 (HA) 2616.0 0.000000e+00 1603/1694 (94%) EPI586542 A/chicken/BC/FAV23/2014 (A/H5N2) segment 4 (HA) 2616.0 0.000000e+00 1603/1694 (94%) EPI586526 A/chicken/BC/FAV21/2014 (A/H5N2) segment 4 (HA) 2616.0 0.000000e+00 1603/1694 (94%) EPI586493 A/poultry/BC/FAV15/2014 (A/H5N2) segment 4 (HA) 2616.0 0.000000e+00 1603/1694 (94%) EPI585092 A/pheasant/Washington/3147-2/2015 (A/H5N2) segment 4 (HA) 2616.0 0.000000e+00 1603/1694 (94%) EPI576470 A/chicken/BC/FAV8/2014 (A/H5N2) segment 4 (HA) 2616.0 0.000000e+00 1603/1694 (94%) EPI573664 A/crane/Kagoshima/KU53/2015(H5N8) (A/H5N8) segment 4 (HA) 2616.0 0.000000e+00 1602/1693 (94%) EPI573231 A/broiler duck/Korea/H1839/2014 (A/H5N8) segment 4 (HA) 2616.0 0.000000e+00 1602/1693 (94%) EPI573225 A/broiler duck/Korea/H1745/2014 (A/H5N8) segment 4 (HA) 2616.0 0.000000e+00 1602/1693 (94%) EPI573223 A/broiler duck/Korea/H1734/2014 (A/H5N8) segment 4 (HA) 2616.0 0.000000e+00 1602/1693 (94%) EPI573221 A/broiler duck/Korea/H1731/2014 (A/H5N8) segment 4 (HA) 2616.0 0.000000e+00 1602/1693 (94%) EPI556967 A/chicken/Germany-MV/R153/2015 (A/H5N8) segment 4 (HA) 2616.0 0.000000e+00 1602/1693 (94%) EPI553362 A/environment/Kagoshima/KU-ngr-H/2014 (A/H5N8) segment 4 (HA) 2616.0 0.000000e+00 1602/1693 (94%) EPI553343 A/chicken/Miyazaki/7/2014 (A/H5N8) segment 4 (HA) 2616.0 0.000000e+00 1602/1693 (94%) EPI552746 A/turkey/Germany/AR2485-86-L00899/2014 (A/H5N8) segment 4 (HA) 2616.0 0.000000e+00 1602/1693 (94%) EPI547678 A/Chicken/Netherlands/14015526/2014 (A/H5N8) segment 4 (HA) 2616.0 0.000000e+00 1602/1693 (94%) EPI687515 A/Duck/Guangdong/PY503/2014(H5N6) (A/H5N6) segment 4 (HA) 2612.3 0.000000e+00 1603/1695 (94%) EPI602107 A/black chicken/Jiangxi/10129/2014 (A/H5N6) segment 4 (HA) 2612.3 0.000000e+00 1602/1694 (94%) EPI601986 A/black chicken/Jiangxi/10136/2014 (A/H0) segment 4 (HA) 2612.3 0.000000e+00 1602/1694 (94%) EPI601977 A/black chicken/Jiangxi/10131/2014 (A/H0) segment 4 (HA) 2612.3 0.000000e+00 1602/1694 (94%) EPI599306 A/chicken/Shenzhen/1845/2013 (A/H5N6) segment 4 (HA) 2612.3 0.000000e+00 1602/1694 (94%) EPI593753 A/goose/Yangzhou/ZG62/2011 (A/H5N5) segment 4 (HA) 2612.3 0.000000e+00 1605/1697 (94%) EPI590894 A/duck/Sichuan/NCXJ24/2014 (A/H5N6) segment 4 (HA) 2612.3 0.000000e+00 1602/1694 (94%) EPI590893 A/duck/Sichuan/NCXJ16/2014 (A/H5N6) segment 4 (HA) 2612.3 0.000000e+00 1602/1694 (94%) EPI590890 A/chicken/Sichuan/NCJPL1/2014 (A/H5N6) segment 4 (HA) 2612.3 0.000000e+00 1602/1694 (94%) EPI585731 A/swan goose/Jilin/JL01/2014 (A/H5N6) segment 4 (HA) 2612.3 0.000000e+00 1603/1695 (94%) EPI547402 A/environment/Zhenjiang/C13/2013 (A/H5N6) segment 4 (HA) 2612.3 0.000000e+00 1603/1695 (94%) EPI328886 A/duck/Eastern China/108/2008 (A/H5N1) segment 4 (HA) 2612.3 0.000000e+00 1605/1697 (94%) EPI837554 A/broiler duck/Korea/H2405/2015 (A/H5N8) segment 4 (HA) 2610.4 0.000000e+00 1599/1690 (94%) EPI837551 A/broiler duck/Korea/H2385/2015 (A/H5N8) segment 4 (HA) 2610.4 0.000000e+00 1602/1694 (94%) EPI837546 A/broiler duck/Korea/H2278/2015 (A/H5N8) segment 4 (HA) 2610.4 0.000000e+00 1602/1694 (94%) EPI690454 A/Canada goose/Washington/197619/2014 (A/H5N2) segment 4 (HA) 2610.4 0.000000e+00 1602/1694 (94%) EPI690447 A/mallard/Washington/195810/2014 (A/H5N2) segment 4 (HA) 2610.4 0.000000e+00 1603/1695 (94%) EPI690427 A/mallard/Washington/195246/2014 (A/H5N2) segment 4 (HA) 2610.4 0.000000e+00 1602/1694 (94%) EPI690315 A/mallard/Idaho/AH0005954/2014 (A/H5N8) segment 4 (HA) 2610.4 0.000000e+00 1602/1694 (94%) EPI690286 A/chicken/California/15-004912/2015 (A/H5N8) segment 4 (HA) 2610.4 0.000000e+00 1602/1694 (94%) EPI687247 A/turkey/Germany/AR3382-L00937/2014 (A/H5N8) segment 4 (HA) 2610.4 0.000000e+00 1601/1693 (94%) EPI662730 A/chicken/Nebraska/15-017990-5/2015 (A/H5N2) segment 4 (HA) 2610.4 0.000000e+00 1603/1695 (94%) EPI662716 A/chicken/Minnesota/15-013533-1/2015 (A/H5N2) segment 4 (HA) 2610.4 0.000000e+00 1602/1694 (94%) EPI662694 A/chicken/Nebraska/15-017897-1/2015 (A/H5N2) segment 4 (HA) 2610.4 0.000000e+00 1603/1695 (94%) EPI662640 A/chicken/Yamaguchi/6/2014 (A/H5N8) segment 4 (HA) 2610.4 0.000000e+00 1601/1693 (94%) EPI662624 A/chicken/Saga/1-1/2015 (A/H5N8) segment 4 (HA) 2610.4 0.000000e+00 1601/1693 (94%) EPI620422 A/chicken/Iowa/13542-2/2015 (A/H5N2) segment 4 (HA) 2610.4 0.000000e+00 1603/1695 (94%) EPI590699 A/chicken/Oregon/A01819044/2015 (A/H5N2) segment 4 (HA) 2610.4 0.000000e+00 1602/1694 (94%) EPI590679 A/eurasian wigeon/Netherlands/1/2015 (A/H5N8) segment 4 (HA) 2610.4 0.000000e+00 1599/1690 (94%) EPI587521 A/American wigeon/BC/050-31/2015 (A/H5N8) segment 4 (HA) 2610.4 0.000000e+00 1602/1694 (94%) EPI586501 A/poultry/BC/FAV17/2014 (A/H5N2) segment 4 (HA) 2610.4 0.000000e+00 1602/1694 (94%) EPI585111 A/eurasian wigeon/Netherlands/1/2015 (A/H5N8) segment 4 (HA) 2610.4 0.000000e+00 1599/1690 (94%)
  3. Isolate name: A/Mandarin_duck/Korea/K16-187-3/2016 Isolate ID: EPI_ISL_238148 Passage details/history: c1 Type: A / H5N6 Lineage: Sample information Collection date: 2016-10-28 Host Aix galericulata Additional host information: Mandarin duck Domestic status: Wild Is vaccinated: N Location: Korea, Republic of / Chungcheongbuk-do Additional location information: Gokgyo-cheon (36°45'12.3"N 127°07'12.7"E) Health status: Specimen source: Feces Strain or commercial product name used for vaccination: Institute information Originating lab: Avian diaseases laboratory, College of Veterinary Medicine, Konkuk University Sample ID given by the sample provider: K16-187-3 Address: Avian diaseases laboratory, College of Veterinary Medicine, Konkuk University Hwa-yang, Gwang-jin 143-701 Seoul Korea, Republic of Submitting lab: Konkuk University Sample ID given by the submitting laboratory: K16-187-3 Authors: Jung-Hoon, Kwon; Jin-Yong, Noh; Seong-Su, Yuk; Tseren-Ochir, Erdene-Ochir; Woo-Tack, Hong; Jei-Hyun, Jeong; Sol, Jeong; Gyeong-Bin, Gwon; Jiho, Lee; Yujin, Kim; Kyujik, Kim; Junbeom, Kim; Chang-Seon, Song Address: Konkuk University College of Veterinary Medicine 1 Hwayang-dong, Gwangjin-gu 143-701 Seoul Korea, Republic of Publication Publication In vivo antiviral resistance Phenotype Genotype Unspecified Antiviral resistance tested by experimental procedures Adamantanes: Unknown Oseltamivir: Unknown Zanamivir: Unknown Peramivir: Unknown Other: Unknown Additional information Antigenic characterization: Clade 2.3.4.4 H5 HPAI Note: Sequence segment identifier length accession # INSDC Sequence PB2 A/Mandarin_duck/Korea/K16-187-3/2016 2206 EPI861480 PB1 A/Mandarin_duck/Korea/K16-187-3/2016 2242 EPI861481 PA A/Mandarin_duck/Korea/K16-187-3/2016 2118 EPI861483 HA A/Mandarin_duck/Korea/K16-187-3/2016 1689 EPI861484 NP A/Mandarin_duck/Korea/K16-187-3/2016 1431 EPI861485 NA A/Mandarin_duck/Korea/K16-187-3/2016 1321 EPI861486 MP A/Mandarin_duck/Korea/K16-187-3/2016 914 EPI861487 NS A/Mandarin_duck/Korea/K16-187-3/2016 826 EPI861488 Submitter information Submitter: Kwon, Jung Hoon Submission Date: 2016-11-24 Last modifier: Kwon, Jung Hoon Last modified: 2016-11-24 Address: Konkuk University College of Veterinary Medicine 1 Hwayang-dong, Gwangjin-gu 143-701 Seoul Korea, Republic of
  4. Konkuk University has released full 2016 H5N6 sequence from feces from wild Mandarin Duck in South Korea.
  5. Descriptions Align Segment-ID Name Score E-Value Identity EPI861571 A/mute swan/Croatia/70/2016 (A/H5N8) segment 8 (NS) 1530.1 0.000000e+00 838/838 (100%) EPI860238 A/wild duck/Poland/82A/2016 (A/H5N8) segment 8 (NS) 1508.0 0.000000e+00 827/835 (99%) EPI836618 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 8 (NS) 1508.0 0.000000e+00 829/838 (98%) EPI836610 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 8 (NS) 1508.0 0.000000e+00 829/838 (98%) EPI823760 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 8 (NS) 1508.0 0.000000e+00 829/838 (98%) EPI823752 A/wild duck/Tyva/35/2016 (A/H5N8) segment 8 (NS) 1508.0 0.000000e+00 829/838 (98%) EPI823464 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 8 (NS) 1508.0 0.000000e+00 829/838 (98%) EPI773761 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 8 (NS) 1502.4 0.000000e+00 828/838 (98%) EPI703688 A/duck/Eastern China/S1109/2014 (A/H5N8) segment 8 (NS) 1491.4 0.000000e+00 826/838 (98%) EPI690812 A/goose/Yangzhou/0420/2014 (A/H5N8) segment 8 (NS) 1476.6 0.000000e+00 823/837 (98%) EPI764785 A/duck/Shaoxing/5240/2013 (A/H0) segment 8 (NS) 1465.5 0.000000e+00 821/837 (98%) EPI690804 A/goose/Shandong/WFSG1/2014 (A/H5N8) segment 8 (NS) 1465.5 0.000000e+00 821/837 (98%) EPI690796 A/goose/Jiangsu/QD5/2014 (A/H5N8) segment 8 (NS) 1465.5 0.000000e+00 821/837 (98%) EPI530993 A/duck/Zhejiang/W24/2013 (A/H5N8) segment 8 (NS) 1460.0 0.000000e+00 820/837 (97%) EPI703682 A/duck/Eastern China/S0215/2014 (A/H5N8) segment 8 (NS) 1458.1 0.000000e+00 821/839 (97%) EPI762162 A/goose/Eastern China/CZ/2013 (A/H5N8) segment 8 (NS) 1448.9 0.000000e+00 818/837 (97%) EPI602042 A/duck/Ningbo/3262/2013 (A/H0) segment 8 (NS) 1448.9 0.000000e+00 818/837 (97%) EPI643151 A/Environment/Guangdong/GZ55/2013(H5N8) (A/H5N8) segment 8 (NS) 1443.4 0.000000e+00 818/838 (97%) EPI561505 A/Baikal teal/Korea/H52/2014 (A/H5N8) segment 8 (NS) 1443.4 0.000000e+00 817/837 (97%) EPI530994 A/duck/Zhejiang/6D18/2013 (A/H5N8) segment 8 (NS) 1443.4 0.000000e+00 817/837 (97%) EPI509710 A/breeder duck/Korea/Gochang1/2014 (A/H5N8) segment 8 (NS) 1443.4 0.000000e+00 817/837 (97%) EPI507677 A/mallard duck/Shanghai/SH-9/2013 (A/H5N8) segment 8 (NS) 1443.4 0.000000e+00 818/838 (97%) EPI703687 A/goose/Eastern China/S0408/2014 (A/H5N8) segment 8 (NS) 1441.5 0.000000e+00 818/839 (97%) EPI762154 A/duck/Eastern China/JY/2014 (A/H5N8) segment 8 (NS) 1437.8 0.000000e+00 816/837 (97%) EPI703679 A/duck/Eastern China/S1210/2013 (A/H5N8) segment 8 (NS) 1437.8 0.000000e+00 816/837 (97%) EPI681416 A/goose/Zhejiang/925104/2014 (A/H5N8) segment 8 (NS) 1437.8 0.000000e+00 816/837 (97%) EPI681415 A/goose/Zhejiang/925037/2014 (A/H5N8) segment 8 (NS) 1432.3 0.000000e+00 815/837 (97%) EPI681406 A/goose/Zhejiang/925106/2014 (A/H5N6) segment 8 (NS) 1432.3 0.000000e+00 815/837 (97%) EPI646032 A/goose/Jiangsu/WX202/2014 (A/H5N8) segment 8 (NS) 1410.1 0.000000e+00 811/837 (96%) EPI681414 A/duck/Zhejiang/925169/2014 (A/H5N8) segment 8 (NS) 1404.6 0.000000e+00 810/837 (96%) EPI681413 A/duck/Zhejiang/925019/2014 (A/H5N8) segment 8 (NS) 1404.6 0.000000e+00 810/837 (96%) EPI461611 A/duck/Hunan/S11643/2012 (A/H4N9) segment 8 (NS) 1402.7 0.000000e+00 811/839 (96%) EPI461603 A/duck/Hunan/S11547/2012 (A/H4N9) segment 8 (NS) 1402.7 0.000000e+00 811/839 (96%) EPI837813 A/environment/Korea/W136/2006 (A/H7N7) segment 8 (NS) 1388.0 0.000000e+00 807/837 (96%) EPI470634 A/duck/Jiangxi/21714/2011 (A/H11N9) segment 8 (NS) 1388.0 0.000000e+00 807/837 (96%) EPI392653 A/wild bird/Korea/A72/10 (A/H7N7) segment 8 (NS) 1388.0 0.000000e+00 807/837 (96%) EPI299310 A/avian/Japan/8KI0068/2008 (A/H3N6) segment 8 (NS) 1388.0 0.000000e+00 807/837 (96%) EPI837815 A/environment/Korea/W148/2006 (A/H7N7) segment 8 (NS) 1382.4 0.000000e+00 806/837 (96%) EPI837814 A/environment/Korea/W143/2006 (A/H7N7) segment 8 (NS) 1382.4 0.000000e+00 806/837 (96%) EPI470663 A/northern shoveler/Hong Kong/MPK276/2009 (A/H11N9) segment 8 (NS) 1382.4 0.000000e+00 806/837 (96%) EPI387512 A/ruddy shelduck/Mongolia/2-79/2007 (A/H3N8) segment 8 (NS) 1382.4 0.000000e+00 806/837 (96%) EPI387496 A/pintail/Mongolia/2-65/2007 (A/H3N8) segment 8 (NS) 1382.4 0.000000e+00 806/837 (96%) EPI363934 A/duck/Guizhou/1560/2007 (A/H6N8) segment 8 (NS) 1382.4 0.000000e+00 806/837 (96%) EPI314535 A/avian/Japan/8KI0184/2008 (A/H4N6) segment 8 (NS) 1382.4 0.000000e+00 806/837 (96%) EPI299262 A/avian/Japan/8KI0185/2008 (A/H4N6) segment 8 (NS) 1382.4 0.000000e+00 806/837 (96%) EPI299254 A/avian/Japan/8KI0195/2008 (A/H6N8) segment 8 (NS) 1382.4 0.000000e+00 806/837 (96%) EPI284654 A/duck/Hunan/8-19/2009 (A/H4N2) segment 8 (NS) 1382.4 0.000000e+00 806/837 (96%) EPI268628 A/duck/Fujian/12035/2005 (A/H6N6) segment 8 (NS) 1382.4 0.000000e+00 806/837 (96%) EPI230017 A/red crested pochard/Mongolia/1915/2006 (A/H3N6) segment 8 (NS) 1382.4 0.000000e+00 806/837 (96%) EPI461791 A/environment/Hunan/S11511/2012 (A/H4N9) segment 8 (NS) 1380.6 0.000000e+00 807/839 (96%) EPI446539 A/environment/Jiangxi/28/2009 (A/H11N9) segment 8 (NS) 1376.9 0.000000e+00 805/837 (96%) EPI420071 A/mallard/California/2578V/2011 (A/H0) segment 8 (NS) 1376.9 0.000000e+00 805/837 (96%) EPI419972 A/mallard/California/2563V/2011 (A/H4N6) segment 8 (NS) 1376.9 0.000000e+00 805/837 (96%) EPI419965 A/mallard/California/2563P/2011 (A/H4N6) segment 8 (NS) 1376.9 0.000000e+00 805/837 (96%) EPI419907 A/mallard/California/2552V/2011 (A/H4N8) segment 8 (NS) 1376.9 0.000000e+00 805/837 (96%) EPI446518 A/environment/Jiangxi/26/2009 (A/H11N9) segment 8 (NS) 1375.0 0.000000e+00 804/836 (96%) EPI837810 A/aquatic bird/Korea/w44/2005 (A/H7N3) segment 8 (NS) 1371.3 0.000000e+00 804/837 (96%) EPI589175 A/duck/China/J1/2012 (A/H4N6) segment 8 (NS) 1371.3 0.000000e+00 804/837 (96%) EPI540193 A/duck/Bangladesh/1753/2010 (A/H11N3) segment 8 (NS) 1371.3 0.000000e+00 804/837 (96%) EPI508167 A/wild duck/Korea/CSM27-12/2009 (A/H7N6) segment 8 (NS) 1371.3 0.000000e+00 804/837 (96%) EPI504039 A/wild duck/SH17-1/2008 (A/H2N3) segment 8 (NS) 1371.3 0.000000e+00 804/837 (96%) EPI420126 A/mallard/California/2594V/2011 (A/H4N6) segment 8 (NS) 1371.3 0.000000e+00 804/837 (96%) EPI420119 A/mallard/California/2594P/2011 (A/H4N6) segment 8 (NS) 1371.3 0.000000e+00 804/837 (96%) EPI384049 A/duck/Thailand/CU-LM7288T/2010 (A/H7N6) segment 8 (NS) 1371.3 0.000000e+00 804/837 (96%) EPI384039 A/duck/Thailand/CU-LM7288C/2010 (A/H7N6) segment 8 (NS) 1371.3 0.000000e+00 804/837 (96%) EPI384017 A/duck/Thailand/CU-LM7283C/2010 (A/H7N6) segment 8 (NS) 1371.3 0.000000e+00 804/837 (96%) EPI383995 A/duck/Thailand/CU-LM7283T/2010 (A/H7N6) segment 8 (NS) 1371.3 0.000000e+00 804/837 (96%) EPI383983 A/duck/Thailand/CU-LM7285C/2010 (A/H7N6) segment 8 (NS) 1371.3 0.000000e+00 804/837 (96%) EPI383953 A/duck/Thailand/CU-LM7280C/2010 (A/H7N6) segment 8 (NS) 1371.3 0.000000e+00 804/837 (96%) EPI383937 A/duck/Thailand/CU-LM7284C/2010 (A/H7N6) segment 8 (NS) 1371.3 0.000000e+00 804/837 (96%) EPI276132 A/pintail/Akita/1364/2008 (A/H1N2) segment 8 (NS) 1371.3 0.000000e+00 804/837 (96%) EPI276127 A/pintail/Akita/1353/2008 (A/H1N2) segment 8 (NS) 1371.3 0.000000e+00 804/837 (96%) EPI760217 A/duck/Hunan/161/2015 (A/H3N6) segment 8 (NS) 1365.8 0.000000e+00 803/837 (95%) EPI470632 A/duck/Jiangxi/22041/2008 (A/H4N9) segment 8 (NS) 1365.8 0.000000e+00 803/837 (95%) EPI439096 A/chicken/Taiwan/TC149/2010 (A/H4) segment 8 (NS) 1365.8 0.000000e+00 803/837 (95%) EPI419937 A/mallard/California/2555V/2011 (A/H11N9) segment 8 (NS) 1365.8 0.000000e+00 803/837 (95%) EPI419819 A/mallard/California/2533V/2011 (A/H4N6) segment 8 (NS) 1365.8 0.000000e+00 803/837 (95%) EPI419777 A/mallard/California/2525P/2011 (A/H4N6) segment 8 (NS) 1365.8 0.000000e+00 803/837 (95%) EPI418438 A/mallard/California/2525V/2011 (A/H0) segment 8 (NS) 1365.8 0.000000e+00 803/837 (95%) EPI392651 A/wild bird/Korea/A330/09 (A/H7N7) segment 8 (NS) 1365.8 0.000000e+00 804/838 (95%) EPI392650 A/wild bird/Korea/A331/09 (A/H7N7) segment 8 (NS) 1365.8 0.000000e+00 804/838 (95%) EPI383969 A/duck/Thailand/CU-LM7279T/2010 (A/H7N6) segment 8 (NS) 1365.8 0.000000e+00 803/837 (95%) EPI276122 A/pintail/Akita/1265/2008 (A/H1N2) segment 8 (NS) 1365.8 0.000000e+00 803/837 (95%) EPI276117 A/pintail/Miyagi/1472/2008 (A/H1N1) segment 8 (NS) 1365.8 0.000000e+00 803/837 (95%) EPI268476 A/mallard/Jiangxi/13228/2005 (A/H6N1) segment 8 (NS) 1365.8 0.000000e+00 803/837 (95%) EPI692476 A/duck/Henan/S4179/2009 (A/H4N6) segment 8 (NS) 1360.3 0.000000e+00 802/837 (95%) EPI527757 A/mallard/San Jiang/275/2007 (A/H6N1) segment 8 (NS) 1360.3 0.000000e+00 802/837 (95%) EPI471877 A/duck/Guangxi/GXd-6/2010 (A/H6N8) segment 8 (NS) 1360.3 0.000000e+00 802/837 (95%) EPI470648 A/duck/Jiangxi/3292/2009 (A/H7N9) segment 8 (NS) 1360.3 0.000000e+00 802/837 (95%) EPI470642 A/duck/Jiangxi/3257/2009 (A/H7N9) segment 8 (NS) 1360.3 0.000000e+00 802/837 (95%) EPI470641 A/duck/Jiangxi/3152/2009 (A/H7N9) segment 8 (NS) 1360.3 0.000000e+00 802/837 (95%) EPI470635 A/duck/Jiangxi/3283/2009 (A/H7N9) segment 8 (NS) 1360.3 0.000000e+00 802/837 (95%) EPI470604 A/duck/Jiangxi/3286/2009 (A/H7N9) segment 8 (NS) 1360.3 0.000000e+00 802/837 (95%) EPI470603 A/duck/Jiangxi/3230/2009 (A/H7N9) segment 8 (NS) 1360.3 0.000000e+00 802/837 (95%) EPI470602 A/duck/Jiangxi/3214/2009 (A/H7N9) segment 8 (NS) 1360.3 0.000000e+00 802/837 (95%) EPI470601 A/duck/Jiangxi/3190/2009 (A/H7N9) segment 8 (NS) 1360.3 0.000000e+00 802/837 (95%) EPI470600 A/duck/Jiangxi/3169/2009 (A/H7N9) segment 8 (NS) 1360.3 0.000000e+00 802/837 (95%) EPI470599 A/duck/Jiangxi/3141/2009 (A/H7N9) segment 8 (NS) 1360.3 0.000000e+00 802/837 (95%) EPI470598 A/duck/Jiangxi/3096/2009 (A/H7N9) segment 8 (NS) 1360.3 0.000000e+00 802/837 (95%) EPI419951 A/mallard/California/2559P/2011 (A/H5N8) segment 8 (NS) 1360.3 0.000000e+00 802/837 (95%)
  6. Align Segment-ID Name Score E-Value Identity EPI861570 A/mute swan/Croatia/70/2016 (A/H5N8) segment 7 (MP) 1807.1 0.000000e+00 978/978 (100%) EPI860237 A/wild duck/Poland/82A/2016 (A/H5N8) segment 7 (MP) 1785.0 0.000000e+00 974/978 (99%) EPI773760 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 7 (MP) 1783.1 0.000000e+00 973/977 (99%) EPI823751 A/wild duck/Tyva/35/2016 (A/H5N8) segment 7 (MP) 1768.4 0.000000e+00 971/978 (99%) EPI823463 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 7 (MP) 1768.4 0.000000e+00 971/978 (99%) EPI836617 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 7 (MP) 1762.8 0.000000e+00 970/978 (99%) EPI823759 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 7 (MP) 1762.8 0.000000e+00 970/978 (99%) EPI836609 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 7 (MP) 1757.3 0.000000e+00 969/978 (99%) EPI704539 A/duck/Mongolia/709/2015 (A/H10N7) segment 7 (MP) 1718.5 0.000000e+00 962/978 (98%) EPI704531 A/duck/Mongolia/626/2015 (A/H10N7) segment 7 (MP) 1718.5 0.000000e+00 962/978 (98%) EPI704515 A/duck/Mongolia/499/2015 (A/H10N7) segment 7 (MP) 1718.5 0.000000e+00 962/978 (98%) EPI704343 A/duck/Mongolia/179/2015 (A/H3N8) segment 7 (MP) 1718.5 0.000000e+00 962/978 (98%) EPI704335 A/duck/Mongolia/173/2015 (A/H3N8) segment 7 (MP) 1718.5 0.000000e+00 962/978 (98%) EPI692379 A/duck/Chongqing/S2086/2012 (A/H4N8) segment 7 (MP) 1713.0 0.000000e+00 961/978 (98%) EPI682954 A/wild bird/Wuhan/CDHN15/2015 (A/H6N2) segment 7 (MP) 1707.4 0.000000e+00 960/978 (98%) EPI682953 A/wild bird/Wuhan/CDHN09/2015 (A/H6N2) segment 7 (MP) 1707.4 0.000000e+00 960/978 (98%) EPI590050 A/duck/Vietnam/LBM798/2014 (A/H3N6) segment 7 (MP) 1707.4 0.000000e+00 960/978 (98%) EPI467812 A/European teal/Chany/63/2011 (A/H3N8) segment 7 (MP) 1707.4 0.000000e+00 960/978 (98%) EPI461550 A/duck/Hunan/S11090/2012 (A/H4N6) segment 7 (MP) 1701.9 0.000000e+00 959/978 (98%) EPI682981 A/duck/Wuhan/WHYF05/2014 (A/H9N2) segment 7 (MP) 1696.3 0.000000e+00 959/979 (97%) EPI704449 A/duck/Mongolia/996/2015 (A/H3N8) segment 7 (MP) 1690.8 0.000000e+00 957/978 (97%) EPI704417 A/duck/Mongolia/543/2015 (A/H4N6) segment 7 (MP) 1690.8 0.000000e+00 957/978 (97%) EPI601676 A/duck/Jiangxi/34864/2013 (A/H0) segment 7 (MP) 1690.8 0.000000e+00 957/978 (97%) EPI599826 A/duck/Jiangxi/32213/2013 (A/H7N6) segment 7 (MP) 1690.8 0.000000e+00 957/978 (97%) EPI548388 A/chicken/Jilin/SD001/2014 (A/H9N2) segment 7 (MP) 1687.1 0.000000e+00 956/978 (97%) EPI682951 A/wild bird/Wuhan/CDHN173/2015 (A/H11N9) segment 7 (MP) 1685.3 0.000000e+00 956/978 (97%) EPI682950 A/wild bird/Wuhan/CDHN22/2015 (A/H11N9) segment 7 (MP) 1685.3 0.000000e+00 956/978 (97%) EPI682949 A/wild bird/Wuhan/CDHN01/2015 (A/H11N9) segment 7 (MP) 1685.3 0.000000e+00 956/978 (97%) EPI590087 A/duck/Quang Ninh/90c112/2013 (A/H3N2) segment 7 (MP) 1685.3 0.000000e+00 956/978 (97%) EPI773768 A/chicken/Netherlands/16007311-037041/2016 (A/H7N9) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI753587 A/duck/Hokkaido/W9/2015 (A/H1N1) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI704294 A/duck/Mongolia/127/2015 (A/H4N6) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI704270 A/duck/Mongolia/101/2015 (A/H4N6) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI602450 A/duck/Jiangxi/33665/2013 (A/H10N3) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI602443 A/duck/Jiangxi/33663/2013 (A/H10N3) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI602436 A/duck/Jiangxi/33651/2013 (A/H10N3) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI602429 A/duck/Jiangxi/33637/2013 (A/H10N3) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI602405 A/duck/Jiangxi/33759/2013 (A/H10N3) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI602398 A/duck/Jiangxi/33757/2013 (A/H10N3) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI602391 A/duck/Jiangxi/33753/2013 (A/H10N3) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI602384 A/duck/Jiangxi/33713/2013 (A/H10N3) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI602377 A/duck/Jiangxi/33699/2013 (A/H10N3) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI602370 A/duck/Jiangxi/33695/2013 (A/H10N3) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI602352 A/duck/Jiangxi/33777/2013 (A/H10N3) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI602345 A/duck/Jiangxi/33775/2013 (A/H10N3) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI602338 A/duck/Jiangxi/33769/2013 (A/H10N3) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI602331 A/duck/Jiangxi/33765/2013 (A/H10N3) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI602324 A/duck/Jiangxi/33763/2013 (A/H10N3) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI601720 A/duck/Jiangxi/29297/2013 (A/H0) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI599882 A/duck/Jiangxi/33779/2013 (A/H10N3) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI599875 A/duck/Jiangxi/33778/2013 (A/H10N3) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI599868 A/duck/Jiangxi/33747/2013 (A/H10N3) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI599861 A/duck/Jiangxi/33744/2013 (A/H10N3) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI599854 A/duck/Jiangxi/33701/2013 (A/H10N3) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI599847 A/duck/Jiangxi/33653/2013 (A/H10N3) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI599840 A/duck/Jiangxi/33641/2013 (A/H10N3) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI599833 A/duck/Jiangxi/33629/2013 (A/H10N3) segment 7 (MP) 1679.7 0.000000e+00 955/978 (97%) EPI704506 A/duck/Mongolia/326/2015 (A/H10N3) segment 7 (MP) 1674.2 0.000000e+00 955/979 (97%) EPI704498 A/duck/Mongolia/245/2015 (A/H10N3) segment 7 (MP) 1674.2 0.000000e+00 955/979 (97%) EPI704302 A/duck/Mongolia/141/2015 (A/H0N2) segment 7 (MP) 1674.2 0.000000e+00 955/979 (97%) EPI692667 A/chicken/Vietnam/HU1-976/2014 (A/H9N2) segment 7 (MP) 1674.2 0.000000e+00 954/978 (97%) EPI372429 A/shoveler/Egypt/00004-NAMRU3/2007 (A/H10N9) segment 7 (MP) 1674.2 0.000000e+00 955/979 (97%) EPI372421 A/teal/Egypt/01207-NAMRU3/2007 (A/H10N7) segment 7 (MP) 1674.2 0.000000e+00 955/979 (97%) EPI363933 A/duck/Guizhou/1560/2007 (A/H6N8) segment 7 (MP) 1674.2 0.000000e+00 955/979 (97%) EPI316755 A/mallard/Czech Republic/13438-29K/2010 (A/H11N9) segment 7 (MP) 1674.2 0.000000e+00 954/978 (97%) EPI306424 A/shoveler/Koymor/118/2009 (A/H3) segment 7 (MP) 1674.2 0.000000e+00 954/978 (97%) EPI841782 A/chicken/Wales/600-020823/2014 (A/H4N6) segment 7 (MP) 1668.6 0.000000e+00 954/979 (97%) EPI693701 A/duck/Mongolia/20/2015 (A/H3N8) segment 7 (MP) 1668.6 0.000000e+00 953/978 (97%) EPI514272 A/mallard/Sweden/52334/2006 (A/H4N6) segment 7 (MP) 1668.6 0.000000e+00 954/979 (97%) EPI514029 A/mallard/Sweden/68575/2007 (A/H4N6) segment 7 (MP) 1668.6 0.000000e+00 954/979 (97%) EPI439562 A/avian/Israel/824/2005 (A/H10N2) segment 7 (MP) 1668.6 0.000000e+00 954/979 (97%) EPI248496 A/mallard/Germany-RP/R193/09 (A/H1N1) segment 7 (MP) 1668.6 0.000000e+00 954/979 (97%) EPI190341 A/mallard/Netherlands/1/2006 (A/H8N4) segment 7 (MP) 1668.6 0.000000e+00 954/979 (97%) EPI685607 A/duck/Vietnam/HU1-151/2014 (A/H11N7) segment 7 (MP) 1663.1 0.000000e+00 952/978 (97%) EPI647783 A/duck/Vietnam/HU1-148/2014 (A/H11N7) segment 7 (MP) 1663.1 0.000000e+00 952/978 (97%) EPI647782 A/duck/Vietnam/HU1-16/2014 (A/H11N7) segment 7 (MP) 1663.1 0.000000e+00 952/978 (97%) EPI647780 A/muscovy duck/Vietnam/HU1-399/2014 (A/H11N7) segment 7 (MP) 1663.1 0.000000e+00 952/978 (97%) EPI619262 A/mallard/Sweden/60041/2007 (A/H8N2) segment 7 (MP) 1663.1 0.000000e+00 953/979 (97%) EPI618959 A/mallard/Sweden/1417/2002 (A/H10N7) segment 7 (MP) 1663.1 0.000000e+00 953/979 (97%) EPI513559 A/mallard/Sweden/101180/2009 (A/H4N6) segment 7 (MP) 1663.1 0.000000e+00 953/979 (97%) EPI513552 A/mallard/Sweden/101081/2009 (A/H4N6) segment 7 (MP) 1663.1 0.000000e+00 953/979 (97%) EPI513538 A/mallard/Sweden/100881/2009 (A/H4N6) segment 7 (MP) 1663.1 0.000000e+00 953/979 (97%) EPI513499 A/mallard/Sweden/101431/2009 (A/H4N6) segment 7 (MP) 1663.1 0.000000e+00 953/979 (97%) EPI513485 A/mallard/Sweden/101298/2009 (A/H4N6) segment 7 (MP) 1663.1 0.000000e+00 953/979 (97%) EPI377995 A/common teal/Netherlands/2/2008 (A/H2N3) segment 7 (MP) 1663.1 0.000000e+00 953/979 (97%) EPI372437 A/shoveler/Egypt/00006-NAMRU3/2007 (A/H10N1) segment 7 (MP) 1663.1 0.000000e+00 953/979 (97%) EPI372413 A/shoveler/Egypt/00241-NAMRU3/2007 (A/H7N3) segment 7 (MP) 1663.1 0.000000e+00 953/979 (97%) EPI372405 A/shoveler/Egypt/00215-NAMRU3/2007 (A/H7N9) segment 7 (MP) 1663.1 0.000000e+00 953/979 (97%) EPI372397 A/shoveler/Egypt/01198-NAMRU3/2007 (A/H10N7) segment 7 (MP) 1663.1 0.000000e+00 953/979 (97%) EPI296609 A/mallard/Sweden/90/2005 (A/H11N9) segment 7 (MP) 1663.1 0.000000e+00 953/979 (97%) EPI231188 A/spot-billed duck/Korea/540/2008 (A/H6N1) segment 7 (MP) 1663.1 0.000000e+00 953/979 (97%) EPI220565 A/mallard/Czech Republic/15307-17/2008 (A/H0) segment 7 (MP) 1663.1 0.000000e+00 953/979 (97%) EPI190357 A/gadwall/Netherlands/1/2006 (A/H9N2) segment 7 (MP) 1663.1 0.000000e+00 953/979 (97%) EPI181962 A/mallard/Netherlands/2/2005 (A/H4N2) segment 7 (MP) 1663.1 0.000000e+00 953/979 (97%) EPI619147 A/mallard/Sweden/50055/2006 (A/H8N4) segment 7 (MP) 1657.6 0.000000e+00 952/979 (97%) EPI619097 A/mallard/Sweden/68537/2007 (A/H0) segment 7 (MP) 1657.6 0.000000e+00 952/979 (97%) EPI618547 A/mallard/Sweden/58705/2006 (A/H5N2) segment 7 (MP) 1657.6 0.000000e+00 952/979 (97%) EPI618488 A/mallard/Sweden/101589/2009 (A/H11N9) segment 7 (MP) 1657.6 0.000000e+00 952/979 (97%) EPI559668 A/harbour seal/Germany/1/2014 (A/H10N7) segment 7 (MP) 1657.6 0.000000e+00 952/979 (97%) EPI544354 A/harbour seal/Germany/1/2014 (A/H10N7) segment 7 (MP) 1657.6 0.000000e+00 952/979 (97%)
  7. Descriptions Align Segment-ID Name Score E-Value Identity EPI861569 A/mute swan/Croatia/70/2016 (A/H5N8) segment 6 (NA) 2597.5 0.000000e+00 1406/1406 (100%) EPI861573 A/mute swan/Croatia/78/2016 (A/H5N8) segment 6 (NA) 2575.3 0.000000e+00 1402/1406 (99%) EPI860232 A/wild duck/Poland/82A/2016 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1399/1406 (99%) EPI859649 A/wild duck/Germany-BW/R8455/2016 (A/H5N8) segment 6 (NA) 2555.0 0.000000e+00 1398/1406 (99%) EPI836616 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI836608 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI823758 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI823750 A/wild duck/Tyva/35/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI823462 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI773759 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI859213 A/tufted_duck/Germany-SH/R8446/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI703648 A/duck/Eastern China/S1109/2014 (A/H5N8) segment 6 (NA) 2508.9 0.000000e+00 1390/1406 (98%) EPI703642 A/duck/Eastern China/S0215/2014 (A/H5N8) segment 6 (NA) 2475.6 0.000000e+00 1384/1406 (98%) EPI681357 A/goose/Zhejiang/925037/2014 (A/H5N8) segment 6 (NA) 2464.6 0.000000e+00 1382/1406 (98%) EPI681358 A/goose/Zhejiang/925104/2014 (A/H5N8) segment 6 (NA) 2442.4 0.000000e+00 1378/1406 (98%) EPI583873 A/duck/Shaoxing/5240/2013 (A/H0) segment 6 (NA) 2431.3 0.000000e+00 1376/1406 (97%) EPI591884 A/duck/Jiangxi/23970/2013 (A/H0) segment 6 (NA) 2425.8 0.000000e+00 1375/1406 (97%) EPI690794 A/goose/Jiangsu/QD5/2014 (A/H5N8) segment 6 (NA) 2420.2 0.000000e+00 1374/1406 (97%) EPI561493 A/Baikal teal/Korea/H52/2014 (A/H5N8) segment 6 (NA) 2420.2 0.000000e+00 1374/1406 (97%) EPI530990 A/duck/Zhejiang/6D18/2013 (A/H5N8) segment 6 (NA) 2420.2 0.000000e+00 1375/1407 (97%) EPI509700 A/breeder duck/Korea/Gochang1/2014 (A/H5N8) segment 6 (NA) 2420.2 0.000000e+00 1374/1406 (97%) EPI762160 A/goose/Eastern China/CZ/2013 (A/H5N8) segment 6 (NA) 2414.7 0.000000e+00 1373/1406 (97%) EPI703638 A/duck/Eastern China/S1210/2013 (A/H5N8) segment 6 (NA) 2414.7 0.000000e+00 1373/1406 (97%) EPI530989 A/duck/Zhejiang/W24/2013 (A/H5N8) segment 6 (NA) 2414.7 0.000000e+00 1374/1407 (97%) EPI690802 A/goose/Shandong/WFSG1/2014 (A/H5N8) segment 6 (NA) 2409.2 0.000000e+00 1372/1406 (97%) EPI681355 A/duck/Zhejiang/925019/2014 (A/H5N8) segment 6 (NA) 2409.2 0.000000e+00 1372/1406 (97%) EPI703635 A/duck/Eastern China/L1021/2012 (A/H5N8) segment 6 (NA) 2403.6 0.000000e+00 1371/1406 (97%) EPI681356 A/duck/Zhejiang/925169/2014 (A/H5N8) segment 6 (NA) 2403.6 0.000000e+00 1372/1407 (97%) EPI646030 A/goose/Jiangsu/WX202/2014 (A/H5N8) segment 6 (NA) 2398.1 0.000000e+00 1370/1406 (97%) EPI507675 A/mallard duck/Shanghai/SH-9/2013 (A/H5N8) segment 6 (NA) 2398.1 0.000000e+00 1371/1407 (97%) EPI602039 A/duck/Ningbo/3262/2013 (A/H0) segment 6 (NA) 2396.2 0.000000e+00 1351/1378 (98%) EPI762152 A/duck/Eastern China/JY/2014 (A/H5N8) segment 6 (NA) 2392.5 0.000000e+00 1369/1406 (97%) EPI703634 A/duck/Eastern China/L0722/2012 (A/H5N8) segment 6 (NA) 2392.5 0.000000e+00 1369/1406 (97%) EPI703633 A/duck/Eastern China/L0611/2011 (A/H5N8) segment 6 (NA) 2387.0 0.000000e+00 1369/1407 (97%) EPI703631 A/duck/Eastern China/L0405/2010 (A/H5N8) segment 6 (NA) 2387.0 0.000000e+00 1368/1406 (97%) EPI690810 A/goose/Yangzhou/0420/2014 (A/H5N8) segment 6 (NA) 2387.0 0.000000e+00 1368/1406 (97%) EPI703647 A/goose/Eastern China/S0408/2014 (A/H5N8) segment 6 (NA) 2381.5 0.000000e+00 1367/1406 (97%) EPI703632 A/duck/Eastern China/L0423/2011 (A/H5N8) segment 6 (NA) 2359.3 0.000000e+00 1358/1398 (97%) EPI442019 A/duck/Jiangsu/k1203/2010 (A/H5N8) segment 6 (NA) 2342.7 0.000000e+00 1353/1395 (96%) EPI544894 A/duck/Shandong/Q1/2013 (A/H5N8) segment 6 (NA) 2337.1 0.000000e+00 1360/1407 (96%) EPI561600 A/broiler duck/Korea/H133/2014 (A/H5N8) segment 6 (NA) 2331.6 0.000000e+00 1358/1406 (96%) EPI718279 A/ostrich/Korea/H829/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI703639 A/goose/Eastern China/L1204/2012 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI703637 A/goose/Eastern China/L1214/2012 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI703636 A/duck/Eastern China/L1120/2012 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI585633 A/baikal teal/Korea/2417/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI585632 A/baikal teal/Korea/2416/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI585630 A/baikal teal/Korea/2406/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI585629 A/baikal teal/Korea/2403/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI585628 A/baikal teal/Korea/2402/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI585626 A/baikal teal/Korea/1458/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI585624 A/baikal teal/Korea/1456/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI585623 A/baikal teal/Korea/1454/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI585620 A/baikal teal/Korea/1448/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI585619 A/baikal teal/Korea/1447/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI585617 A/baikal teal/Korea/1445/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI585616 A/baikal teal/Korea/1441/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI561692 A/common teal/Korea/H455-30/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI561676 A/bean goose/Korea/H328/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI561662 A/Korean native chicken/Korea/H257/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI561655 A/breeder chicken/Korea/H250/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI561648 A/breeder duck/Korea/H249/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI561635 A/white-fronted goose/Korea/H231/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI561628 A/mallard/Korea/H207/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI561621 A/breeder duck/Korea/H200/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI561614 A/breeder duck/Korea/H158/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI561579 A/breeder chicken/Korea/H122/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI561510 A/bean goose/Korea/H53/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI561362 A/broiler duck/Korea/H49/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI561355 A/broiler duck/Korea/H48/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI561350 A/broiler duck/Korea/H47/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI561343 A/Baikal teal/Korea/H41/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI561209 A/broiler duck/Korea/H31/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI561198 A/broiler duck/Korea/H29/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI509714 A/baikal teal/Korea/Donglim3/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI509706 A/broiler duck/Korea/Buan2/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1357/1406 (96%) EPI585627 A/baikal teal/Korea/2399/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1356/1406 (96%) EPI585625 A/baikal teal/Korea/1457/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1356/1406 (96%) EPI585622 A/baikal teal/Korea/1452/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1356/1406 (96%) EPI561707 A/bean goose/Korea/H40/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1356/1406 (96%) EPI561699 A/spot-billed duck/Korea/H455-42/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1356/1406 (96%) EPI561683 A/tundra swan/Korea/H411/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1356/1406 (96%) EPI561669 A/mallard/Korea/H297/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1356/1406 (96%) EPI561607 A/broiler duck/Korea/H145/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1356/1406 (96%) EPI561593 A/breeder duck/Korea/H128/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1356/1406 (96%) EPI561572 A/Baikal teal/Korea/H96/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1356/1406 (96%) EPI561565 A/Baikal teal/Korea/H84/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1356/1406 (96%) EPI561558 A/Coot/Korea/H81/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1357/1407 (96%) EPI561551 A/Baikal teal/Korea/H80/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1357/1407 (96%) EPI561544 A/Baikal teal/Korea/H68/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1356/1406 (96%) EPI561531 A/Baikal teal/Korea/H66/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1356/1406 (96%) EPI561524 A/broiler duck/Korea/H65/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1356/1406 (96%) EPI561517 A/Baikal teal/Korea/H62/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1356/1406 (96%) EPI552748 A/turkey/Germany/AR2485-86-L00899/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1356/1406 (96%) EPI548495 A/duck/Chiba/26-372-61/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1357/1407 (96%) EPI548487 A/duck/Chiba/26-372-48/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1357/1407 (96%) EPI544759 A/turkey/Germany-MV/R2472/2014 (A/H5N8) segment 6 (NA) 2320.5 0.000000e+00 1356/1406 (96%) EPI624533 A/scarlet_ibis/Germany/AR44-L01279/2015 (A/H5N8) segment 6 (NA) 2315.0 0.000000e+00 1355/1406 (96%) EPI585631 A/baikal teal/Korea/2414/2014 (A/H5N8) segment 6 (NA) 2315.0 0.000000e+00 1355/1406 (96%) EPI585621 A/baikal teal/Korea/1449/2014 (A/H5N8) segment 6 (NA) 2315.0 0.000000e+00 1355/1406 (96%)
  8. Align Segment-ID Name Score E-Value Identity EPI861568 A/mute swan/Croatia/70/2016 (A/H5N8) segment 4 (HA) 3147.8 0.000000e+00 1704/1704 (100%) EPI861572 A/mute swan/Croatia/78/2016 (A/H5N8) segment 4 (HA) 3142.3 0.000000e+00 1703/1704 (99%) EPI859212 A/tufted_duck/Germany-SH/R8446/2016 (A/H5N8) segment 4 (HA) 3098.0 0.000000e+00 1695/1704 (99%) EPI836614 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 4 (HA) 3098.0 0.000000e+00 1695/1704 (99%) EPI836606 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 4 (HA) 3098.0 0.000000e+00 1695/1704 (99%) EPI823756 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 4 (HA) 3098.0 0.000000e+00 1695/1704 (99%) EPI823748 A/wild duck/Tyva/35/2016 (A/H5N8) segment 4 (HA) 3098.0 0.000000e+00 1695/1704 (99%) EPI823460 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 4 (HA) 3098.0 0.000000e+00 1695/1704 (99%) EPI773757 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 4 (HA) 3098.0 0.000000e+00 1696/1705 (99%) EPI859650 A/wild duck/Germany-BW/R8455/2016 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI860231 A/wild duck/Poland/82A/2016 (A/H5N8) segment 4 (HA) 3072.1 0.000000e+00 1690/1704 (99%) EPI703608 A/duck/Eastern China/S1109/2014 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI681300 A/goose/Zhejiang/925104/2014 (A/H5N8) segment 4 (HA) 2992.7 0.000000e+00 1676/1704 (98%) EPI681299 A/goose/Zhejiang/925037/2014 (A/H5N8) segment 4 (HA) 2992.7 0.000000e+00 1676/1704 (98%) EPI703602 A/duck/Eastern China/S0215/2014 (A/H5N8) segment 4 (HA) 2981.6 0.000000e+00 1674/1704 (98%) EPI681290 A/goose/Zhejiang/925106/2014 (A/H5N6) segment 4 (HA) 2970.5 0.000000e+00 1672/1704 (98%) EPI509698 A/breeder duck/Korea/Gochang1/2014 (A/H5N8) segment 4 (HA) 2959.5 0.000000e+00 1670/1704 (98%) EPI561495 A/Baikal teal/Korea/H52/2014 (A/H5N8) segment 4 (HA) 2948.4 0.000000e+00 1668/1704 (97%) EPI591879 A/duck/Jiangxi/23970/2013 (A/H0) segment 4 (HA) 2942.8 0.000000e+00 1667/1704 (97%) EPI703599 A/duck/Eastern China/S1210/2013 (A/H5N8) segment 4 (HA) 2937.3 0.000000e+00 1666/1704 (97%) EPI690792 A/goose/Jiangsu/QD5/2014 (A/H5N8) segment 4 (HA) 2937.3 0.000000e+00 1666/1704 (97%) EPI762158 A/goose/Eastern China/CZ/2013 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1665/1704 (97%) EPI703607 A/goose/Eastern China/S0408/2014 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1665/1704 (97%) EPI690808 A/goose/Yangzhou/0420/2014 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1666/1705 (97%) EPI690800 A/goose/Shandong/WFSG1/2014 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1665/1704 (97%) EPI602037 A/duck/Ningbo/3262/2013 (A/H0) segment 4 (HA) 2926.2 0.000000e+00 1664/1704 (97%) EPI583870 A/duck/Shaoxing/5240/2013 (A/H0) segment 4 (HA) 2926.2 0.000000e+00 1664/1704 (97%) EPI530985 A/duck/Zhejiang/W24/2013 (A/H5N8) segment 4 (HA) 2926.2 0.000000e+00 1664/1704 (97%) EPI762150 A/duck/Eastern China/JY/2014 (A/H5N8) segment 4 (HA) 2920.7 0.000000e+00 1664/1705 (97%) EPI530986 A/duck/Zhejiang/6D18/2013 (A/H5N8) segment 4 (HA) 2920.7 0.000000e+00 1663/1704 (97%) EPI507673 A/mallard duck/Shanghai/SH-9/2013 (A/H5N8) segment 4 (HA) 2920.7 0.000000e+00 1663/1704 (97%) EPI860239 A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 4 (HA) 2917.0 0.000000e+00 1599/1609 (99%) EPI703595 A/duck/Eastern China/L1021/2012 (A/H5N8) segment 4 (HA) 2915.1 0.000000e+00 1662/1704 (97%) EPI681280 A/goose/Zhejiang/77166/2014 (A/H5N2) segment 4 (HA) 2911.4 0.000000e+00 1660/1702 (97%) EPI646105 A/goose/Jiangsu/WX202/2014 (A/H5N8) segment 4 (HA) 2904.1 0.000000e+00 1660/1704 (97%) EPI681298 A/duck/Zhejiang/925169/2014 (A/H5N8) segment 4 (HA) 2898.5 0.000000e+00 1660/1705 (97%) EPI703593 A/duck/Eastern China/L0611/2011 (A/H5N8) segment 4 (HA) 2893.0 0.000000e+00 1658/1704 (97%) EPI682915 A/duck/Wenzhou/YHQL22/2014 (A/H5N6) segment 4 (HA) 2893.0 0.000000e+00 1658/1704 (97%) EPI703592 A/duck/Eastern China/L0423/2011 (A/H5N8) segment 4 (HA) 2887.4 0.000000e+00 1657/1704 (97%) EPI681297 A/duck/Zhejiang/925019/2014 (A/H5N8) segment 4 (HA) 2887.4 0.000000e+00 1658/1705 (97%) EPI593747 A/goose/Shandong/k1201/2009 (A/H5N1) segment 4 (HA) 2881.9 0.000000e+00 1656/1704 (97%) EPI442017 A/duck/Jiangsu/k1203/2010 (A/H5N8) segment 4 (HA) 2881.9 0.000000e+00 1656/1704 (97%) EPI703594 A/duck/Eastern China/L0722/2012 (A/H5N8) segment 4 (HA) 2870.8 0.000000e+00 1654/1704 (97%) EPI643147 A/Environment/Guangdong/GZ55/2013(H5N8) (A/H5N8) segment 4 (HA) 2865.3 0.000000e+00 1651/1707 (96%) EPI475579 A/wild duck/Shandong/628/2011 (A/H5N1) segment 4 (HA) 2854.2 0.000000e+00 1651/1704 (96%) EPI703596 A/duck/Eastern China/L1120/2012 (A/H5N8) segment 4 (HA) 2848.7 0.000000e+00 1650/1704 (96%) EPI703591 A/duck/Eastern China/L0405/2010 (A/H5N8) segment 4 (HA) 2848.7 0.000000e+00 1650/1704 (96%) EPI703598 A/goose/Eastern China/L1204/2012 (A/H5N8) segment 4 (HA) 2843.1 0.000000e+00 1649/1704 (96%) EPI703590 A/duck/Eastern China/L0230/2010 (A/H5N2) segment 4 (HA) 2837.6 0.000000e+00 1648/1704 (96%) EPI703589 A/duck/Eastern China/L0321/2010 (A/H5N2) segment 4 (HA) 2837.6 0.000000e+00 1648/1704 (96%) EPI431456 A/duck/Hebei/3/2011 (A/H5N2) segment 4 (HA) 2837.6 0.000000e+00 1648/1704 (96%) EPI398966 A/goose/Eastern China/1112/2011 (A/H5N2) segment 4 (HA) 2826.5 0.000000e+00 1646/1704 (96%) EPI399960 A/duck/Jiangsu/m234/2012 (A/H5N2) segment 4 (HA) 2822.8 0.000000e+00 1638/1693 (96%) EPI398965 A/duck/Eastern China/1111/2011 (A/H5N2) segment 4 (HA) 2821.0 0.000000e+00 1645/1704 (96%) EPI672795 A/duck/Guangdong/s14044/2014 (A/H5N8) segment 4 (HA) 2809.9 0.000000e+00 1643/1704 (96%) EPI672787 A/goose/Guangdong/s13124/2013 (A/H5N8) segment 4 (HA) 2809.9 0.000000e+00 1643/1704 (96%) EPI682917 A/duck/Taizhou/TZYG12/2015 (A/H5N6) segment 4 (HA) 2798.8 0.000000e+00 1641/1704 (96%) EPI544892 A/duck/Shandong/Q1/2013 (A/H5N8) segment 4 (HA) 2798.8 0.000000e+00 1641/1704 (96%) EPI703597 A/goose/Eastern China/L1214/2012 (A/H5N8) segment 4 (HA) 2793.3 0.000000e+00 1640/1704 (96%) EPI493825 A/duck/Guangdong/wy19/2008 (A/H5N5) segment 4 (HA) 2787.7 0.000000e+00 1640/1705 (96%) EPI493817 A/duck/Guangdong/wy11/2008 (A/H5N5) segment 4 (HA) 2765.6 0.000000e+00 1638/1707 (95%) EPI431448 A/duck/Hebei/2/2011 (A/H5N2) segment 4 (HA) 2761.9 0.000000e+00 1634/1704 (95%) EPI687531 A/Enviroment/Guangdong/SS127/2013(H5N6) (A/H5N6) segment 4 (HA) 2748.9 0.000000e+00 1633/1705 (95%) EPI499478 A/chicken/China/AH/2012 (A/H5N1) segment 4 (HA) 2743.4 0.000000e+00 1631/1704 (95%) EPI676397 A/environment/GZ/75/2014 (A/H5N6) segment 4 (HA) 2737.9 0.000000e+00 1631/1705 (95%) EPI681296 A/chicken/Zhejiang/727155/2014 (A/H5N6) segment 4 (HA) 2732.3 0.000000e+00 1630/1705 (95%) EPI602419 A/chicken/Dongguan/3363/2013 (A/H5N6) segment 4 (HA) 2732.3 0.000000e+00 1630/1705 (95%) EPI602028 A/chicken/Dongguan/4190/2013 (A/H0) segment 4 (HA) 2728.6 0.000000e+00 1629/1705 (95%) EPI703600 A/goose/Eastern China/S0513/2013 (A/H5N6) segment 4 (HA) 2726.8 0.000000e+00 1629/1705 (95%) EPI681295 A/chicken/Zhejiang/727026/2014 (A/H5N6) segment 4 (HA) 2726.8 0.000000e+00 1629/1705 (95%) EPI681294 A/chicken/Zhejiang/727022/2014 (A/H5N6) segment 4 (HA) 2726.8 0.000000e+00 1629/1705 (95%) EPI681284 A/chicken/Zhejiang/727159/2014 (A/H5N2) segment 4 (HA) 2726.8 0.000000e+00 1629/1705 (95%) EPI681283 A/chicken/Zhejiang/727079/2014 (A/H5N2) segment 4 (HA) 2726.8 0.000000e+00 1629/1705 (95%) EPI599339 A/duck/Dongguan/3069/2013 (A/H5N6) segment 4 (HA) 2726.8 0.000000e+00 1629/1705 (95%) EPI599299 A/chicken/Shenzhen/1395/2013 (A/H5N6) segment 4 (HA) 2726.8 0.000000e+00 1629/1705 (95%) EPI328878 A/duck/Eastern China/031/2009 (A/H5N5) segment 4 (HA) 2726.8 0.000000e+00 1630/1706 (95%) EPI687498 A/Goose/ Guangdong /JG125/2013(H5N6) (A/H5N6) segment 4 (HA) 2721.2 0.000000e+00 1628/1705 (95%) EPI681287 A/goose/Zhejiang/727110/2014 (A/H5N6) segment 4 (HA) 2721.2 0.000000e+00 1628/1705 (95%) EPI681286 A/goose/Zhejiang/727092/2014 (A/H5N6) segment 4 (HA) 2721.2 0.000000e+00 1628/1705 (95%) EPI602484 A/chicken/Shenzhen/1061/2013 (A/H5N6) segment 4 (HA) 2721.2 0.000000e+00 1629/1706 (95%) EPI602412 A/chicken/Dongguan/2690/2013 (A/H5N6) segment 4 (HA) 2721.2 0.000000e+00 1628/1705 (95%) EPI602045 A/chicken/Dongguan/2818/2013 (A/H0) segment 4 (HA) 2721.2 0.000000e+00 1628/1705 (95%) EPI599333 A/silkie chicken/Dongguan/2809/2013 (A/H5N6) segment 4 (HA) 2721.2 0.000000e+00 1628/1705 (95%) EPI599327 A/duck/Dongguan/2685/2013 (A/H5N6) segment 4 (HA) 2721.2 0.000000e+00 1628/1705 (95%) EPI531456 A/duck/Guangdong/GD01/2014 (A/H5N6) segment 4 (HA) 2721.2 0.000000e+00 1628/1705 (95%) EPI736914 A/Changsha/1/2014 (A/H5N6) segment 4 (HA) 2717.5 0.000000e+00 1628/1705 (95%) EPI681285 A/duck/Zhejiang/727158/2014 (A/H5N6) segment 4 (HA) 2715.7 0.000000e+00 1628/1706 (95%) EPI602477 A/chicken/Shenzhen/715/2013 (A/H5N6) segment 4 (HA) 2715.7 0.000000e+00 1627/1705 (95%) EPI602094 A/chicken/Shenzhen/712/2013 (A/H0) segment 4 (HA) 2715.7 0.000000e+00 1626/1704 (95%) EPI599662 A/goose/Shantou/1806/2014 (A/H5N6) segment 4 (HA) 2715.7 0.000000e+00 1628/1706 (95%) EPI599655 A/goose/Shantou/1791/2014 (A/H5N6) segment 4 (HA) 2715.7 0.000000e+00 1628/1706 (95%) EPI599648 A/goose/Shantou/1763/2014 (A/H5N6) segment 4 (HA) 2715.7 0.000000e+00 1628/1706 (95%) EPI599285 A/chicken/Shenzhen/433/2013 (A/H5N6) segment 4 (HA) 2715.7 0.000000e+00 1627/1705 (95%) EPI530054 A/duck/Jiangxi/95/2014 (A/H5N6) segment 4 (HA) 2715.7 0.000000e+00 1627/1705 (95%) EPI645049 A/swine/Guangdong/1/2014 (A/H5N6) segment 4 (HA) 2713.8 0.000000e+00 1627/1705 (95%) EPI775291 A/duck/Guangzhou/021/2014 (A/H5N6) segment 4 (HA) 2710.2 0.000000e+00 1626/1705 (95%) EPI775283 A/duck/Guangzhou/018/2014 (A/H5N6) segment 4 (HA) 2710.2 0.000000e+00 1626/1705 (95%) EPI687547 A/Goose/ Guangdong /SSZYP/2015(H5N6) (A/H5N6) segment 4 (HA) 2710.2 0.000000e+00 1626/1705 (95%) EPI602103 A/chicken/Shenzhen/2072/2013 (A/H0) segment 4 (HA) 2710.2 0.000000e+00 1626/1705 (95%) EPI599346 A/chicken/Dongguan/4259/2013 (A/H5N6) segment 4 (HA) 2710.2 0.000000e+00 1626/1705 (95%)
  9. Isolate name: A/mute swan/Croatia/70/2016 Isolate ID: EPI_ISL_238196 Passage details/history: 0 Type: A / H5N8 Lineage: Sample information Collection date: 2016-10-31 Host Cygnus olor Additional host information: Domestic status: Wild Is vaccinated: Location: Croatia / Vukovarsko-Srijemska Zupanija Additional location information: Cerna, river Bid Health status: Dead Specimen source: Organ Strain or commercial product name used for vaccination: Institute information Originating lab: Sample ID given by the sample provider: Address: Submitting lab: Croatian Veterinary Institute Sample ID given by the submitting laboratory: Authors: Address: Croatian Veterinary Institute Poultry Centre Heinzelova 55 10000 Zagreb Croatia Publication Publication In vivo antiviral resistance Phenotype Genotype Unspecified Antiviral resistance tested by experimental procedures Adamantanes: Unknown Oseltamivir: Unknown Zanamivir: Unknown Peramivir: Unknown Other: Unknown Additional information Antigenic characterization: Note: Sequence segment identifier length accession # INSDC Sequence HA A/mute swan/Croatia/70/2016 1729 EPI861568 NA A/mute swan/Croatia/70/2016 1425 EPI861569 MP A/mute swan/Croatia/70/2016 983 EPI861570 NS A/mute swan/Croatia/70/2016 838 EPI861571 Submitter information Submitter: Savić, Vladimir Submission Date: 2016-11-24 Last modifier: Savić, Vladimir Last modified: 2016-11-24 Address: Croatian Veterinary Institute Poultry Centre Heinzelova 55 10000 Zagreb Croatia
  10. Croatian Veterinary Institute has released two H5N8 sets of sequences (at GISAID) from mute swans which match Uvs Lake sequences.
  11. Two sets of H5N8 sequences from Mute Swans in Croatia have an REKRRKR cleavage site and are related to the Uvs Lake strain.
  12. References Zhao G, Gu X, Lu X, Pan J, Duan Z, Zhao K, et al. Novel reassortant highly pathogenic H5N2 avian influenza viruses in poultry in China. PLoS One. 2012;7:e46183. DOIPubMed Lee YJ, Kang HM, Lee EK, Song BM, Jeong J, Kwon YK, et al. Novel reassortant influenza A(H5N8) viruses, South Korea, 2014. Emerg Infect Dis. 2014;20:1087–9. DOIPubMed Zhou LC, Liu J, Pei EL, Xue WJ, Lyu JM, Cai YT, et al. Novel avian influenza A(H5N8) viruses in migratory birds, China, 2013–2014. Emerg Infect Dis. 2016;22:1121–3. DOIPubMed Wu H, Peng X, Xu L, Jin C, Cheng L, Lu X, et al. Novel reassortant influenza A(H5N8) viruses in domestic ducks, eastern China. Emerg Infect Dis. 2014;20:1315–8. DOIPubMed Jeong J, Kang HM, Lee EK, Song BM, Kwon YK, Kim HR, et al. Highly pathogenic avian influenza virus (H5N8) in domestic poultry and its relationship with migratory birds in South Korea during 2014. Vet Microbiol. 2014;173:249–57. DOIPubMed Marchenko VY, Susloparov IM, Kolosova NP, Goncharova NI, Shipovalov AV, Durymanov AG, et al. Influenza A(H5N8) virus isolation in Russia, 2014. Arch Virol. 2015;160:2857–60. DOIPubMed Lee DH, Torchetti MK, Winker K, Ip HS, Song CS, Swayne DE. Intercontinental spread of Asian-origin H5N8 to North America through Beringia by migratory birds. J Virol. 2015;89:6521–4. DOIPubMed Olsen B, Munster VJ, Wallensten A, Waldenström J, Osterhaus AD, Fouchier RA. Global patterns of influenza a virus in wild birds. Science. 2006;312:384–8. DOIPubMed Florin Beltran M. Uvs Nuur Lake. In: Biomes and ecosystems. Amenia (NY): Salem Press; 2013. p. 1260–1. Sharshov K, Silko N, Sousloparov I, Zaykovskaya A, Shestopalov A, Drozdov I. Avian influenza (H5N1) outbreak among wild birds, Russia, 2009. Emerg Infect Dis. 2010;16:349–51. DOI
  13. Table Nucleotide identity of near homologs in GenBank to the influenza A (H5N8) virus from Uvs-Nuur Lake, Russia, as of June 30, 2016* Gene Virus Classification % Identity PB2 A/duck/Mongolia/30/2015(H3N8) Eurasian LPAI 98.7 PB1 A/chicken/Hunan/S1267/2010(H4N6) Eurasian LPAI 98.1 PA A/duck/Mongolia/996/2015(H3N8) Eurasian LPAI 98.7 HA A/duck/eastern China/S1109/2014(H5N8) H5N8 clade 2.3.4.4 99.1 NP A/duck/Mongolia/129/2015(H3N3) Eurasian LPAI 98.7 NA A/duck/eastern China/S1109/2014(H5N8) H5N8 clade 2.3.4.4 98.9 M A/duck/Mongolia/179/2015(H3N8) Eurasian LPAI 98.5 NS A/duck/eastern China/S1109/2014(H5N8) H5N8 clade 2.3.4.4 99.3 *HA, hemagglutinin; LPAI, low pathogenicity avian influenza; MP, matrix; NA, neuraminidase; NP, nucleoprotein; NS, nonstructural; PA, polymerase acidic; PB, polymerase basic.
  14. Highly pathogenic avian influenza virus (HPAIV) subtype H5N1 was first isolated from a goose in 1996 in Guangdong China (Gs/GD). This virus evolved into multiple hemagglutinin (HA) genetic clades and underwent reassortment with different neuraminidase and internal genes to generate subtype H5N8 clade 2.3.4.4 Gs/GD HPAIV, which first appeared in an outbreak in poultry in China in 2013 (1), followed closely by outbreaks in South Korea in January 2014 (2). During these outbreaks, 2 distinct groups of H5N8 viruses were identified; group A (Buan-like) and group B (Gochang-like). There have been no further reports of group B virus since its original detection in China and South Korea during 2014 (3,4). In contrast, in early 2014, group A viruses predominated in South Korea (5) and in September of that year were subsequently isolated from a Eurasian wigeon (Anas penelope) in Sakha Republic in northeast Siberia (6). On the basis of aquatic bird migration patterns, we hypothesized that HPAIV (H5N8) reached Siberia during the 2014 spring bird migration (7). The virus was probably carried by birds from Siberia to various countries of Asia, Europe, and North America during the fall migration, representing an intercontinental group A (icA) (7). We report detection of novel HPAIV (H5N8) from wild aquatic birds sampled in western Siberia during the summer of 2016. In June 2016, we collected samples from 13 dead and 30 hunter-harvested wild aquatic birds around Uvs-Nuur Lake (Tyva Republic) at the Russia–Mongolia border. We isolated a total of 11 subtype H5 influenza viruses from birds of various species: the black-headed gull (Larus ridibundus), gray heron (Ardea cinerea), common tern (Sterna hirundo), great crested grebe (Podiceps cristatus), and great cormorant (Phalacrocorax carbo) (Technical Appendix[PDF - 1.26 MB - 11 pages]Table 1). We characterized 3 of the viruses—A/great crested grebe/Uvs-Nuur Lake/341/2016(H5N8), A/common tern/Uvs-Nuur Lake/26/2016(H5N8), and A/gray heron/Uvs-Nuur Lake/20/2016(H5N8)—by sequencing, phylogenetic analysis, and intravenous pathogenicity index (IVPI) testing (online Technical Appendix). We confirmed that all 3 isolates were HPAIV on the basis of amino acid sequence at the HA proteolytic cleavage site (PLREKRRKR/G) and individual IVPIs of 2.75-2.84 in chickens (Technical Appendix[PDF - 1.26 MB - 11 pages] Table 1). The 3 isolates shared 99.2%–100% nucleotide identity across all 8 genes: HA, neuraminidase (NA), polymerase basic 2 (PB2), polymerase basic 2 (PB1), polymerase acidic (PA), nucleoprotein (NP), matrix (M), and nonstructural (NS). BLAST (https://www.ncbi.nlm.nih.gov/blast/) search results showed that the isolates shared >98% identity with low pathogenicity avian influenza virus (LPAIV) from Mongolia and China over 5 gene segments (PB1, PB2, PA, NP, and M) and >98.5% identity with the 2014 H5N8 clade 2.3.4.4 group B HPAIV for the remaining 3 gene segments (HA, NA, and NS) (Table). Phylogenetic analysis showed that the HA, NA, and NS genes clustered with H5N8 clade 2.3.4.4 group B HPAIV viruses identified in eastern China in 2014 (Technical Appendix[PDF - 1.26 MB - 11 pages] Figure). The PB1, PB2, PA, NP, and M genes clustered with LPAIV identified in Mongolia, China, and Vietnam. Wild aquatic birds migrate to and congregate in Siberian wetlands for breeding and molting. Major wild aquatic bird migration routes overlap in Siberia, connecting this broad geographic area to the wintering grounds of Eurasia and Africa. This unique ecosystem has been implicated as a pathway for the dissemination of HPAIV during southward autumn migration of waterfowl, as seen in the spread of H5N1 clade 2.2 in 2005–2006 (8) and H5N8 clade 2.3.4.4 in 2014 (6,7). Uvs-Nuur Lake is a key habitat for 46 resident waterfowl species and 215 kinds of birds migrating south from Siberia (9). During widespread dissemination of the HPAIV clade 2.2 in 2006 and clade 2.3.2 in 2009, these viruses were also detected from wild aquatic birds at Uvs-Nuur Lake, suggesting this area is a useful site for surveillance of HPAIV in wild aquatic birds (10). Because numerous species of migratory shorebirds and waterfowl use the summer breeding grounds of Siberia, the identification of HPAIV infection in wild aquatic birds in this area signifies the potential for wide dissemination of these novel reassortant Group B H5N8 viruses during the 2016 fall migration.
  15. Abstract The emergence of novel avian influenza viruses in migratory birds is of concern because of the potential for virus dissemination during fall migration. We report the identification of novel highly pathogenic avian influenza viruses of subtype H5N8, clade 2.3.4.4, and their reassortment with other avian influenza viruses in waterfowl and shorebirds of Siberia.
  16. Dr. Lee is a postdoctoral researcher at the Southeast Poultry Research Laboratory, USDA Agricultural Research Service, Athens, Georgia, USA. His research interests include molecular epidemiology and host–pathogen interaction of avian influenza viruses. Dong-Hun Lee, Kirill Sharshov, David E. Swayne, Olga Kurskaya, Ivan Sobolev, Marsel Kabilov, Alexander Alekseev, Victor Irza, and Alexander Shestopalov Author affiliations: US Department of Agriculture, Athens, Georgia, USA (D.-H. Lee, D.E. Swayne); Research Institute of Experimental and Clinical Medicine, Novosibirsk, Russia (K. Sharshov, O. Kurskaya, I. Sobolev, A. Alekseev, A. Shestopalov); Institute of Chemical Biology and Fundamental Medicine SB RAS, Novosibirsk (M. Kabilov); Federal Centre for Animal Health, Vladimir, Russia (V. Irza)
  17. Volume 23, Number 2—February 2017 Letter Novel Reassortant Clade 2.3.4.4 Avian Influenza A(H5N8) Virus in Wild Aquatic Birds, Russia, 2016 http://wwwnc.cdc.gov/eid/article/23/2/16-1252_article
  18. Novel Reassortant Clade 2.3.4.4 Avian Influenza A(H5N8) Virus in Wild Aquatic Birds, Russia, 2016 Abstract The emergence of novel avian influenza viruses in migratory birds is of concern because of the potential for virus dissemination during fall migration. We report the identification of novel highly pathogenic avian influenza viruses of subtype H5N8, clade 2.3.4.4, and their reassortment with other avian influenza viruses in waterfowl and shorebirds of Siberia. http://wwwnc.cdc.gov/eid/article/23/2/16-1252_article
  19. References de Araújo TV, Rodrigues LC, de Alencar Ximenes RA, et al. Association between Zika virus infection and microcephaly in Brazil, January to May, 2016: preliminary report of a case-control study. Lancet Infect Dis 2016. Epub September 15, 2016. PubMed Moore CA, Staples JE, Dobyns WB, et al. Characterizing the pattern of anomalies in congenital Zika syndrome for pediatric clinicians. JAMA Pediatr 2016. CrossRef PubMed Schuler-Faccini L, Ribeiro EM, Feitosa IM, et al. Possible association between Zika virus infection and microcephaly—Brazil, 2015. MMWR Morb Mortal Wkly Rep 2016;65:59–62. CrossRef PubMed Russell K, Oliver SE, Lewis L, et al. Update: interim guidance for the evaluation and management of infants with possible congenital Zika virus infection—United States, August 2016. MMWR Morb Mortal Wkly Rep 2016;65:870–8. CrossRef PubMed Lanciotti RS, Calisher CH, Gubler DJ, Chang GJ, Vorndam AV. Rapid detection and typing of dengue viruses from clinical samples by using reverse transcriptase-polymerase chain reaction. J Clin Microbiol 1992;30:545–51. PubMed Lanciotti RS, Kosoy OL, Laven JJ, et al. Genetic and serologic properties of Zika virus associated with an epidemic, Yap State, Micronesia, 2007. Emerg Infect Dis 2008;14:1232–9. CrossRef PubMed American Academy of Pediatrics, Joint Committee on Infant Hearing. Year 2007 position statement: principles and guidelines for early hearing detection and intervention programs. Pediatrics 2007;120:898–921. CrossRef PubMed França GV, Schuler-Faccini L, Oliveira WK, et al. Congenital Zika virus syndrome in Brazil: a case series of the first 1501 livebirths with complete investigation. Lancet 2016;388:891–7. CrossRef PubMed Moura da Silva AA, Ganz JSS, Sousa PD, et al. Early growth and neurologic outcomes of infants with probable congenital Zika virus syndrome. Emerg Infect Dis 2016;22:1953–6. CrossRef PubMed Wimalasundera N, Stevenson VL. Cerebral palsy. Pract Neurol 2016;16:184–94. CrossRef PubMed
  20. FIGURE. Clinical photographs and magnetic resonance (MR) and computed tomography (CT) images of two infants with congenital Zika syndrome* — Brazil, October 2015–October 2016 *A. A newborn (patient 6 in Table 2) with no discernable anomalies including no craniofacial disproportion and normal limbs. B. Same infant at 11 months with head circumference at almost 3 standard deviations below the mean but no apparent craniofacial anomalies. C.D. Axial susceptibility-weighted images at 3.5 months show enlarged lateral ventricles (V) and multiple calcifications (small black arrows). E. T2-weighted image shows thickened frontal cortex with reduced frontal sulcation. Slight irregularities of the inner cortical surfaces of the frontal lobes (black arrows), consistent with polymicrogyria. F.G. On T1-weighted images the ventricles (V) are slightly more apparent and two of the larger calcifications (white arrows) are seen as areas of hyperintensity. H.Noncontrast axial CT from an earlier scan at 3 days shows streak artifacts from patient motion and multiple frontal white matter calcifications (white arrows). I.J. Newborn (patient 7 in Table 2) with slightly depressed frontal regions and sloping forehead noted in I. but less evident in J., the lateral view. K.L.At 12 months, photographs show clear microcephaly but also an engaged infant with good eye contact.
  21. TABLE 2. Neuroimaging findings by computerized tomography (CT) and magnetic resonance (MR) for 13 infants with congenital Zika infection without microcephaly at birth — Brazil, October 2015–October 2016 Patient no. Type of imaging* (age performed) Decreased brain volume Malformations of cortical development Most affected lobes† Cerebellum or brainstem hypoplasia Corpus callosum hypoplasia† Ventriculo-megaly Increased extra-axial CSF space Calcifications§ 1 CT (1 mo.) MR (4 mo.) yes yes right anterior yes yes yes no subcortical and basal ganglia 2 CT (1 wk.) MR (2 mo.) yes yes bilateral diffuse yes no yes no subcortical, basal ganglia 3 CT (2 days) MR (1 wk.) yes† yes† right diffuse no yes yes no subcortical 4 CT (1 day) MR (7.5 mo.) yes yes unknown yes unknown yes no subcortical and basal ganglia 5 CT (3 days) MR (12 mo.) yes yes bilateral diffuse yes yes yes yes subcortical and basal ganglia 6 CT (3 days) MR (3.5 mo.) no yes† bilateral anterior no yes yes no subcortical 7 CT (2 wks.) MR (9 mo.) yes yes bilateral diffuse no yes yes yes subcortical 8 CT (2 mo.) yes yes unknown no yes yes no subcortical and basal ganglia 9 MR (6 mo.) yes yes bilateral anterior no no no no subcortical 10 CT (3 mo.) yes yes bilateral diffuse no not assessed yes no basal ganglia 11 CT (7 mo.) yes yes bilateral diffuse no not assessed yes yes subcortical 12 CT (1 mo.) MR (9 mo.) yes yes bilateral diffuse no yes no no subcortical 13 CT (2 mo.) MR (11 mo.) yes yes bilateral diffuse no yes yes no subcortical Abbreviations: CT = computed tomography; MR = magnetic resonance. * Findings for infants evaluated both by CT and MR are consistent unless otherwise noted. † Based on MR. § Based on CT.
  22. TABLE 1. Clinical history and physical findings from 13 infants with congenital Zika infection without microcephaly at birth — Brazil, October 2015–October 2016 Patient no. Sex Gestational age (wks) Birth weight (gm) Reported prenatal ultrasound abnormalities* Maternal rash Infant Zika virus IgM antibody by ELISA Birth HC (cm) and (SD†) Age (mos) at last follow-up Follow-up HC (cm) and (SD§) Ocular findings¶ Craniofacial disproportion at birth** Arthrogryposis or hip dysplasia at birth†† 1 F 35 2,570 no 3 mo. CSF, serum + 29.5 (-1.72) 11 39 (-3.86) no yes no 2 M 38 3,125 yes 2 mo. CSF + 33.0 (-0.40) 10 41 (-3.33) yes no yes 3 M 39 2,770 no none CSF, serum + 32.0 (-1.63) 11 43 (-2.11) no no no 4 M 37 2,785 yes 2 mo. CSF + 31.0 (-1.65) 10 43 (-1.98) no yes no 5 F 37 2,465 yes 5 mo. CSF + 31.0 (-1.39) 12 36 (-6.18) no yes no 6 M 39 2,975 no 4 mo. CSF + 33.0 (-0.78) 11 42 (-2.89) no no no 7 M 39 3,840 no none CSF + 33.0 (-0.78) 12 40 (-4.68) no yes yes 8 F 41 2,955 no none CSF + 32.0 (-1.95) 9 39.5 (-3.17) no no yes 9 M 39 3,155 no 3 mo. CSF + 33.5 (-0.35) 11 42.5 (-2.50) no no no 10 M 40 3,100 no none CSF + 32.0 (-2.00) 10 40 (-4.27) yes yes no data 11 M 38 2,965 no none CSF + 33.5 (0.02) 7 40 (-2.98) no no no data 12 F 36 2,930 no none serum + 32.5 (0.30) 7 40.5 (-1.35) no no no 13 M 40 2,990 no none serum + 33.0 (-1.16) 5 40 (-2.12) yes yes no Abbreviations: CSF = cerebrospinal fluid; ELISA = enzyme-linked immunosorbent assay; F = female; HC = head circumference; IgM = immunoglobulin M; M = male; SD = standard deviation. * Abnormalities include brain calcifications (patient 2), microcephaly (patient 4), and decreased brain volume with ventriculomegaly (patient 5). † Standard deviations calculated using INTERGROWTH-21st Newborn Size Application Tool (https://intergrowth21.tghn.org/global-perinatal-package/intergrowth-21st-comparison-application/). § Standard deviations calculated using PediTools for World Health Organization growth standard for age 0–24 months (http://peditools.org/growthwho/index.php). ¶ Abnormalities include macular chorioretinal atrophic lesion in right eye (patient 2), discrete chorioretinal macular atrophy in left eye (patient 10), and macular atrophy in left eye (patient 13). ** Abnormalities include redundant scalp (patients 5, 10, 13). †† Abnormalities include arthrogryposis (patient 2), hip dysplasia (patients 2, 7, 8) and diaphragmatic weakness (patient 2).
  23. Discussion Congenital microcephaly has been a hallmark of intrauterine infection with Zika virus. However, despite the absence of microcephaly at birth, the 13 infants in this report with laboratory evidence of Zika virus infection had brain abnormalities associated with congenital Zika syndrome, including ventriculomegaly and decreased brain volume, cortical malformations and subcortical calcifications, underscoring the importance of neuroimaging in evaluating these infants. In addition some infants had other structural or functional abnormalities that might have brought them to medical attention regardless of their head size; however, these findings did not occur more frequently in infants with the smallest HCs. Congenital Zika virus infection without microcephaly at birth previously has been reported (8), as has postnatal development of microcephaly in infants presumed to be infected congenitally (9). However, this is the first series of infants with laboratory evidence of congenital Zika virus infection documented to have poor head growth with microcephaly developing after birth. Decreases in the rate of head growth postnatally in these infants was accompanied by significant neurologic dysfunction, including hypertonia and hemiparesis, dyskinesia/dystonia, dysphagia, epilepsy, and persistence of primitive reflexes. Although these neurologic findings are consistent with previous reports of infants with congenital microcephaly who had prenatal exposure to Zika virus (2), infants who did not have microcephaly at birth showed better social interaction (i.e., they made and held eye contact and had a social smile). However, more than 60% of infants in this series had epilepsy (likely related to the cortical malformations), and all had significant motor disabilities consistent with mixed cerebral palsy (10). The infants were too young to be adequately assessed for cognitive deficits. Among the six mothers who reported a rash, four reported rash in the first trimester and two in the second trimester. Therefore, among these mothers, early occurrence of the presumed infection during pregnancy did not result in the most severe congenital Zika phenotype (i.e., microcephaly at birth). Only three infants were reported to have a history of prenatal ultrasound abnormalities consistent with congenital Zika virus infection. The pathogenesis of postnatal microcephaly from congenital Zika virus infections is not known. The decrease in head growth might be the consequence of earlier in utero destruction of neuroprogenitor or other neural cells, persistent inflammatory response-associated molecules, or continued infection of neural cells. The last seems less likely given the negative Zika virus RT-PCR results in all seven tested CSF samples. The findings in this report are subject to at least four limitations. First, birth HC measurements were recorded with a resolution of 0.5 cm (in contrast to the customary 0.1 cm), which likely resulted in either overestimate or underestimate of the measure in some infants. Two infants had a birth HC that was at or slightly less than 2 SD below the mean, and their HCs could have been misclassified as falling within the normal range. In addition, calculations of SD can vary among the published growth standards for HC. Second, Zika IgM testing was not confirmed by plaque reduction neutralization testing; therefore, infants could have been misclassified because of cross-reactivity with other flaviviruses or nonspecific reactivity within the ELISA. Third, based on this clinical series alone, the birth prevalence of congenital Zika syndrome without microcephaly in the population cannot be estimated. Finally, because serial neuroimaging in an infant is not clinically indicated, progressive changes such as the rate of brain volume loss cannot be assessed. Additional information is needed to fully describe the clinical spectrum of findings associated with congenital Zika virus infection. This report documents that microcephaly at birth is not an essential hallmark of congenital Zika syndrome. Infants with normal HC at birth have brain and other abnormalities associated with congenital Zika syndrome and might develop microcephaly after birth. These findings demonstrate the importance of early neuroimaging for infants exposed to Zika virus prenatally and the need for comprehensive medical and developmental follow-up.
  24. Congenital Zika virus infection can cause microcephaly and severe brain abnormalities (1). Congenital Zika syndrome comprises a spectrum of clinical features (2); however, as is the case with most newly recognized teratogens, the earliest documented clinical presentation is expected to be the most severe. Initial descriptions of the effects of in utero Zika virus infection centered prominently on the finding of congenital microcephaly (3). To assess the possibility of clinical presentations that do not include congenital microcephaly, a retrospective assessment of 13 infants from the Brazilian states of Pernambuco and Ceará with normal head size at birth and laboratory evidence of congenital Zika virus infection was conducted. All infants had brain abnormalities on neuroimaging consistent with congenital Zika syndrome, including decreased brain volume, ventriculomegaly, subcortical calcifications, and cortical malformations. The earliest evaluation occurred on the second day of life. Among all infants, head growth was documented to have decelerated as early as 5 months of age, and 11 infants had microcephaly. These findings provide evidence that among infants with prenatal exposure to Zika virus, the absence of microcephaly at birth does not exclude congenital Zika virus infection or the presence of Zika-related brain and other abnormalities. These findings support the recommendation for comprehensive medical and developmental follow-up of infants exposed to Zika virus prenatally. Early neuroimaging might identify brain abnormalities related to congenital Zika infection even among infants with a normal head circumference (4). Thirteen infants with laboratory evidence of congenital Zika virus infection and normal head size (less than or equal to 2 standard deviations [SD] below the mean for sex and gestational age) at birth (during October 2015–January 2016) are included in this report. The infants were evaluated by multidisciplinary teams at two referral centers in Brazil: the Rehabilitation Center of Association for Assistance of Disabled Children of Pernambuco, Recife, Pernambuco State, and the Infantil Albert Sabin Hospital, Fortaleza, Ceará State during the months of October 2015–October 2016. Eleven of the infants came to clinical attention because their birth head circumference was below the level established by the Brazilian Ministry of Health as requiring further evaluation for possible congenital Zika virus infection (http://combateaedes.saude.gov.br/images/sala-de-situacao/Microcefalia-Protocolo-de-vigilancia-e-resposta-10mar2016-18h.pdf). This level was 33 cm before December 2, 2015, and 32 cm for gestational age ≥37 weeks after that date; however, all of these infants had head circumferences at birth that did not exceed 2 SD below the mean for gestational age, and therefore did not meet the definition for microcephaly (more than 2 SD below the mean). These 11 infants were referred for neurologic evaluation and neuroimaging. The remaining two infants who had head circumferences in the normal range at birth were referred for neurologic evaluation at ages 5 and 7 months because of developmental concerns. A standard form was used to collect demographic and clinical information, including whether the mothers recalled having had a rash during pregnancy. All information was obtained as part of the clinical protocol or as the result of clinical indication. Informed consent was obtained for the collection, use, and publication of clinical photographs of the infants. Laboratory evidence of congenital Zika virus infection was defined as negative laboratory test results for five infectious causes of congenital microcephaly (toxoplasmosis, cytomegalovirus, rubella, syphilis and human immunodeficiency virus) and serologic evidence of Zika virus infection (a positive Zika virus-specific immunoglobulin M (IgM) capture enzyme–linked immunosorbent assay (MAC-ELISA) result on infant cerebrospinal fluid [CSF] or serum). Conventional reverse transcription–polymerase chain reaction (RT-PCR) was performed for the detection of Zika virus and dengue virus RNA, and real-time RT-PCR was performed for chikungunya virus in the Recife location. Monoplex real-time RT-PCR for Zika virus was performed in the Fortaleza location (5,6). Maternal testing for evidence of Zika virus infection was not available during the time of the 13 pregnancies. For this report, microcephaly was defined as head circumference (HC) (also known as occipitofrontal circumference) more than 2 SD below the mean for gestational age and sex, according to the Fetal International and Newborn Growth Consortium for the 21st Century (INTERGROWTH-21st) for fetal and newborn growth (https://intergrowth21.tghn.org/) and the World Health Organization Child Growth Standards for infants (www.who.int/childgrowth/en/). Birth weight was evaluated and classified as appropriate, small, or large for gestational age and sex, also using INTERGROWTH-21st standards. All infants had clinical neurologic and orthopedic evaluations, and brain imaging with computerized tomography (CT) scan without contrast, magnetic resonance imaging (MRI) without contrast, or both, and radiographs of the hips to identify congenital dislocation. In addition, all infants had clinical noninstrumental evaluation of dysphagia by a speech therapist, ophthalmologic examination with ophthalmoscopy assessment, and 11 of 13 infants had auditory evaluation by screening (auditory short latency brainstem evoked response [ABR] to click stimuli) and diagnostic tests (confirmatory frequency-specific ABR with tone burst stimuli) using the routine recommended by Brazilian Heath Ministry and the American Academy of Pediatrics Joint Committee on Infant Hearing (7). Infants clinically suspected of having seizure activity had an electroencephalogram to confirm. The case series included nine male infants and four female infants (Table 1). Eleven patients were born at term (37–41 weeks’ gestation) and two were preterm (35 and 36 weeks’ gestation). Six of 13 mothers described a cutaneous rash between the second and fifth months of pregnancy. All infants had birth weights that were appropriate for gestational age (i.e., within 2 SD of the mean for sex and gestational age). Craniofacial disproportion was noted in six infants; three had redundant skin on the scalp at birth. Three infants had hip dysplasia, including one infant with arthrogryposis who had bilateral dislocated hips. All infants had positive tests for Zika virus–specific IgM in either CSF only (nine infants), serum only (two infants) or CSF and serum (two infants). Seven CSF specimens were tested for Zika virus RNA by RT-PCR and all were negative; two of these infants also had negative RT-PCR testing in serum collected at the same time as CSF. RT-PCR testing results on the two serum-only specimens are pending. No Zika virus testing was performed on urine. Most infants (eight of 13) were tested within the first month of life; however, the date of testing of CSF for two infants is not known. Three infants were tested for Zika virus outside the neonatal period. Although identified at birth because of head size, one infant was not tested until age 4 months; two infants were tested at ages 5 months and 7 months when they were first evaluated because of developmental delay. One infant with both CSF and serum IgM testing positive at birth tested negative on serum re-testing at 6 months of age; another remained positive on re-testing at age 5 months. HCs at birth ranged from 0.30 to -2.00 SD from the mean for gestational age and sex (Table 1). All infants showed a decrease in the rate of HC growth between birth and the time of the last examination. In 11 of 13 infants, postnatal microcephaly was diagnosed because of an HC measurement more than 2 SD below the mean for age and sex. Neuroimaging (CT scan in 13 infants and MRI in 10 infants) showed malformations of cortical development, which were most predominant anteriorly, and calcifications, predominantly in the subcortical region (especially in the transition area between the cortex and white matter). All neuroimaging showed evidence of decreased brain volume, with ventriculomegaly in all infants, and increased extra-axial CSF space in two of 13 infants (Table 2) (Figure). Dysphagia was found on clinical evaluation in 10 of 13 infants. Seven infants had a diagnosis of epilepsy. Five infants had some degree of irritability, which improved by age 4 months. Most infants (12 of 13) had good visual interaction; one infant exhibited no eye contact. Three of 13 infants had chorioretinal abnormalities. All 11 infants tested had normal hearing evaluations. All infants had some degree of hypertonia; 12 of 13 had pyramidal and extrapyramidal signs with dystonic movement. One infant had spastic hemiparesis and another had bilateral hemiparesis, more severe on the left side. One infant with arthrogryposis was difficult to assess because of increased tone in some muscles and decreased in others. Nine of 13 infants had no voluntary movement of the hands and had a grasp reflex. Good head control was present in eight of 13 infants (supplemental material at https://stacks.cdc.gov/view/cdc/42517).

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